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Example source code accompanying O'Reilly's "Hadoop: The Definitive Guide" by Tom White
Official code repository for GATK versions 4 and up
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
A library for manipulating bioinformatics sequencing formats in Apache Spark
Play SET using image recognition and deep learning
Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark
481 contributions in the last year
This exposes the bug in #29, by using all available cores on a machine for testing (in
BaseTest). (I was also able to repoduce the bug when testing…
Running the unit tests with multiple cores results in exceptions like
testReadAndWriteMultiple(HiSeq.10000.vcf.bgz, 131072, VCF_BGZ) (org.disq_b…
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