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1,363 contributions in the last year
Contribution activity
October 1, 2018
September 2018
Created an issue in iobio/genepanel.iobio that received 10 comments
- clin.iobio - When gene list changes, flagged variant for gene still hangs around
- Apply different filters for candidate gene analysis vs all genes analysis
- Region glyphs and highlighting for insuff converage don't adjust on zoom
- Simplify interpretation selection, using star glyph instead of labeled badge
- Change default insufficient coverage mean and median from 30 to 15
- Need to have separate filters for gene coverage (candidate genes vs all genes)
- Clinvar not getting saved in clin.iobio.variant.gene until variant is re-saved
- Scrollbars on clin.iobio (see Matt’s browser)
- In Flagged Variants panel, make it more obvious when highest impact variant is not in the canonical transcript
- Show orange clinvar glyph for genes and variants in side panel if 'likely pathogenic'
- Too many badges, change variant # to transparent background
- gene.iobio on mobile crashes with new UI desig
- Is local browser cache getting cleared on when running clin?
- When non-canonical transcript is selected, highlight it as selected transcript in transcripts menu
- Tighten preset filter for moderate/high impact variants
- Make 'likely pathogenic color' uniform across all cards
- Link out to multiple-alignment conservations for range around variant
- Layout VariantDetail for uniformly
- Show red or orange progress bar by Revel score to indicate pathogenicity
- Show link outs and color for REVEL score (see VarSome)
- Fix scrollbars (Matt) in gene.iobio
- Add info for fields like REVEL to explain scores and cite paper
- Verify that mygene2 and edu mode now work with latest layout
- Simplify how filters are customized by adding menu (on hover) to filter badge. Support adding custom filters with + button and uniquely colored filter badges.
- Add ability to filter on alt thresholds and allelic balance for de novos
- Some issues not shown.
- Don't apply filter 'highOrModerate' in full analysis
- Have to click on step 3 and 4 for Findings to show variants
- Need to only show genepanel after style has changed
- Next button still enabled when last step is selected
- Scrollbars on clin.iobio (see Matt’s browser)
- Add vertical menu to change clin dashboard size, position, and theme (dark vs light)
- Save array of geneObjects with info about GTR an Phenolyzer searches in clin analysis
- Weird sidepanel hiding when going to gene.iobio
- encode64 cache data in DynamoDB
- Make sure clin runs on a variety of laptops/desktops w/ less cpu/memory and Windows OS
- shadow clinician researchers for clin.iobio
- Please change site.css to site.sass and remove all css styles from Vue components, replacing with SASS
- What would you think about making the search term bages more prominent (blue background, white text)? I often forget that I have typed in a search term already.
- Build error
- For clin.iobio - set genepanel to last searched terms and selected genes.
- When I search on 'treacher collins syndrome' in both GTR and Phenolyzer, warning 'term already searched' shows in snackbar
- Upgrade Phenolyzer service to latest release