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@@ -1,24 +1,27 @@ |
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useDynLib(caret)
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+importFrom(ModelMetrics, auc)
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import(foreach, methods, plyr, reshape2, ggplot2, lattice, nlme)
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importFrom(car, powerTransform, yjPower)
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importFrom(grDevices, extendrange)
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-importFrom(stats, .checkMFClasses, .getXlevels, aggregate, anova,
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- approx, as.formula, binom.test, complete.cases, contrasts,
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- cor, cov, delete.response, dist,
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- fitted.values, loess, mahalanobis,
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- mcnemar.test, median, model.frame, model.matrix,
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- model.response, model.weights, na.fail, na.pass, optim,
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- predict, qnorm, quantile, rbinom, reshape, resid,
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- residuals, rnorm, runif, sd, t.test, terms,
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+importFrom(stats, .checkMFClasses, .getXlevels, aggregate, anova,
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+ approx, as.formula, binom.test, complete.cases, contrasts,
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+ cor, cov, delete.response, dist,
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+ fitted.values, loess, mahalanobis,
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+ mcnemar.test, median, model.frame, model.matrix,
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+ model.response, model.weights, na.fail, na.pass, optim,
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+ predict, qnorm, quantile, rbinom, reshape, resid,
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+ residuals, rnorm, runif, sd, t.test, terms,
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toeplitz, var, na.omit, p.adjust, fitted, prcomp, hclust,
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- lm, model.extract, pt, update, binomial)
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-importFrom(stats4, coef)
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-importFrom(utils, capture.output, getFromNamespace, head,
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- install.packages, installed.packages, object.size, flush.console, menu, stack)
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+ lm, model.extract, pt, update, binomial)
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+importFrom(stats4, coef)
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+importFrom(utils, capture.output, getFromNamespace, head,
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+ install.packages, installed.packages, object.size, flush.console, menu, stack,
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+ modifyList, combn
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+ )
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export(anovaScores,
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as.data.frame.resamples,
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- as.matrix.resamples,
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+ as.matrix.resamples,
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avNNet,
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avNNet.default,
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bag,
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@@ -73,7 +76,7 @@ export(anovaScores, |
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extractProb,
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F_meas,
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F_meas.default,
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- F_meas.table,
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+ F_meas.table,
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featurePlot,
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filterVarImp,
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findCorrelation,
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@@ -87,7 +90,7 @@ export(anovaScores, |
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gafs_spCrossover,
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gafs_raMutation,
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gafs,
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- gafs.default,
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+ gafs.default,
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gafsControl,
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gamFormula,
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gamFuncs,
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@@ -143,7 +146,7 @@ export(anovaScores, |
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nullModel,
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nullModel.default,
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oneSE,
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- panel.calibration,
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+ panel.calibration,
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panel.lift,
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panel.lift2,
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panel.needle,
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@@ -196,7 +199,7 @@ export(anovaScores, |
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R2,
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recall,
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recall.default,
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- recall.table,
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+ recall.table,
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resampleHist,
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resamples,
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resamples.default,
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@@ -207,16 +210,16 @@ export(anovaScores, |
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rfeControl,
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rfeIter,
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rfFuncs,
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- rfGA,
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+ rfGA,
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rfSA,
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rfSBF,
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rfStats,
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RMSE,
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safs_initial,
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- safs_perturb,
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+ safs_perturb,
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safs_prob,
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safs,
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- safs.default,
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+ safs.default,
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safsControl,
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sbf,
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sbf.default,
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@@ -339,7 +342,7 @@ S3method(varImp, nnet) |
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S3method(varImp, glmnet)
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S3method(varImp, gam)
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S3method(varImp, gafs)
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-S3method(varImp, safs)
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+S3method(varImp, safs)
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S3method(densityplot, train)
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S3method(histogram, train)
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@@ -377,7 +380,7 @@ S3method(plot, prcomp.resamples) |
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S3method(plot, lift)
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S3method(plot, calibration)
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S3method(plot, gafs)
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-S3method(plot, safs)
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+S3method(plot, safs)
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S3method(confusionMatrix, train)
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S3method(confusionMatrix, rfe)
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@@ -418,7 +421,7 @@ S3method(print, lift) |
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S3method(print, calibration)
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S3method(print, expoTrans)
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S3method(print, gafs)
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-S3method(print, safs)
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+S3method(print, safs)
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S3method(predict, plsda)
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S3method(predict, splsda)
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@@ -441,7 +444,7 @@ S3method(predict, dummyVars) |
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S3method(predict, BoxCoxTrans)
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S3method(predict, expoTrans)
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S3method(predict, gafs)
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-S3method(predict, safs)
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+S3method(predict, safs)
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S3method(summary, bagEarth)
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S3method(summary, bagFDA)
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@@ -459,7 +462,7 @@ S3method(predictors, default) |
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S3method(predictors, rfe)
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S3method(predictors, sbf)
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S3method(predictors, gafs)
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-S3method(predictors, safs)
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+S3method(predictors, safs)
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S3method(confusionMatrix, table)
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@@ -492,7 +495,7 @@ S3method(summary, diff.resamples) |
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S3method(update, train)
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S3method(update, rfe)
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S3method(update, gafs)
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-S3method(update, safs)
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+S3method(update, safs)
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S3method(fitted, train)
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S3method(residuals, train)
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@@ -510,7 +513,7 @@ S3method(oob_pred, sbf) |
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S3method(oob_pred, list)
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S3method(gafs, default)
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-S3method(safs, default)
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+S3method(safs, default)
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S3method(trim, train)
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