Conda recipes for the bioconda channel.

Unix, R and python tools for genomics and data science

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Syntax highlighting for computational biology

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

A simple Snakemake profile for Slurm without --cluster-config

Demonstrating best practices for bioinformatics command line tools

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

CUT&RUN and CUT&Tag data processing and analysis

Aim to be the bioinformatics repository with more and newer packages

Analysis pipelines for genomic sequencing data

Bioinformatics on GCP, AWS or Azure

Bioinformatics analysis scripts, workflows, general code examples

VAPiD: Viral Annotation and Identification Pipeline

Useful bioinformatic scripts

The specification of the MMTF format for biological structures

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.

Collects software dedicated to predicting specific properties of peptides

🚦 Run Picard on BAM files and collate 90 metrics into one file.