Convert output from Cram (and some other tools) to TAP (Test Anything Protocol)
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Updated
Mar 8, 2023 - Python
Convert output from Cram (and some other tools) to TAP (Test Anything Protocol)
Machinekit configuration for the Fabrikator Mini + CRAMPS board
Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplications). It generates realistic genomes as almost always less than 99% of the original real genome is modified.
Using ChatGPT & GPT-4 to generate CRAM & PyCRAM designators in a one-shot fashion
Rust software for solving impartial games.
basepair bio: a single binary with many useful genomics subtools.
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
Functional tests for command line applications
Fast and accurate sequence demultiplexing
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
cram is a computational room acoustics module to simulate and explore various acoustic properties of a modeled space
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
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