Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
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Updated
May 17, 2019 - Python
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Synthego ICE - Inference of CRISPR Editing software
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).
Python library for genome editing, CRISPR gRNA design and prediction
Flexible analysis of high-content CRISPR screening
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
Tools for single-cell feature barcoding analysis
code for analyzing and reconstructing CRISPR recordings
SNP-targeted CRISPR sgRNA design pipeline
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Base Editing screens' Activity-Normalized variant effect size estimation
CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).
Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
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