🧬 EmbedDiff: A modular machine learning pipeline combining ESM2 embeddings, latent diffusion, and transformer-based decoding for de novo protein design
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Updated
Aug 31, 2025 - Python
🧬 EmbedDiff: A modular machine learning pipeline combining ESM2 embeddings, latent diffusion, and transformer-based decoding for de novo protein design
🧬 EmbedDiff-Dayhoff: Protein sequence generation via latent diffusion using Microsoft Dayhoff embeddings. A comprehensive ablation study comparing Dayhoff vs ESM-2 approaches for de novo protein design.
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