As part of examining #490, I noticed that utils.unmask was called 400 times through the tedana workflow. 352 of those 400 times were following the logged line:
"INFO:tedana.metrics.kundu_fit:Performing spatial clustering of components" My data has 323 volumes.
This section of the code should be examined to see if there is any way to call unmask less often o
Upon running the canlab_toolbox_setup I get this warning
Warning: Function vecnorm has the same name as a MATLAB builtin. We suggest you rename the function to avoid a
potential name conflict.
> In path (line 109)
In addpath (line 96)
In canlab_clone_github_repository (line 164)
In canlab_toolbox_setup (line 179)
Might be worth renaming it to avoid name-space collisi
when running the pyhrf_jde_vem_analysis command with the --no-parallel flag, the script forks X processes (X being the number of available threads on the system) even if it doesn't compute the parcels on parallel.
If I don't include the --no-parallel to the command line, each subprocess forks X processes which lead to X² processes which are totally blocking the processor.
I'm really confused