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imagej-plugins

Here are 83 public repositories matching this topic...

haiderriazkhan / CANDLE-J

Collaborative Approach for eNhanced Denoising under Low-light Excitation

image-processing imagej-plugins image-denoising

Updated Feb 22, 2022
C

imagej_macros_and_scripts

MontpellierRessourcesImagerie / imagej_macros_and_scripts

ImageJ macros and scripts written at the imaging facility MRI

imagej fiji imagej-plugins jython image-analysis-workflows imagej-macro bioimage-analysis fiji-macro toolsets imagej-macros imagej-macro-scripts

Updated May 10, 2022
ImageJ Macro

bonej-org / BoneJ2

Plugins for bone image analysis

imagej travis-ci image-processing scientific-computing java-8 image-analysis imagej-plugins maven-multimodule fiji-plugin skeletal-biology

Updated Apr 29, 2022
Java

ekatrukha / DoM_Utrecht

Detection of Molecules plugin for ImageJ, Utrecht University

java single-molecule imagej imagej-plugins fiji-plugin utrecht-university

Updated Apr 15, 2021
Java

Biomedical-Imaging-Group / OrientationJ

ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

orientation imagej-plugins vector-field directionality unser structure-tensor

Updated Oct 3, 2021
Java

ekatrukha / BigTrace

FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets

java imagej-plugins fiji-plugin utrecht-university curve-tracing 3d-microscopy

Updated May 13, 2022
Java

ekatrukha / ComDet

ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

java detection particles microscopy imagej-plugins dots fiji-plugin utrecht-university vesicles

Updated May 13, 2022
Java

thorstenwagner / ij-blob

ImageJ library to detect and analyse connected components (blobs) in binary images

imagej fiji image-analysis imagej-plugins component-analysis binary-image

Updated Jul 4, 2016
Java

emx77 / ASI_MTF

Imagej macro to calculate the MTF based on a knife edge measurement

imagej image-analysis electron-microscopy imagej-plugins point-spread-function imagej-macro mtf x-ray-imaging

Updated Nov 1, 2021
ImageJ Macro

jpsacha / sbt-imagej

sbt-imagej is an SBT (Simmple Build Tool) plugin that that helps with development of ImageJ plugins

scala imagej sbt-plugin sbt-imagej imagej-plugins

Updated Dec 12, 2018
Scala

mrsutherland / XRM_Reader

ImageJ plugin to read xrm files.

imagej fiji imagej-plugins xrm zeiss xradia xrm-reader txrm txm

Updated Nov 14, 2017
Java

SebMilardo / ErrorLevelAnalysis

Error Level Analysis (ELA) in ImageJ

java image-processing imagej-plugins

Updated Oct 17, 2019
Java

ekatrukha / CurveTrace

Curve tracing ImageJ plugin

microscopy imagej-plugins fiji-plugin curve-tracing

Updated Feb 11, 2021
Java

ij-plugins / ijp-DeBayer2SX

Raw Bayer pattern to color image converters

imagej imagej-plugins bayer-pattern bayer-filter

Updated Feb 22, 2022
Scala

dterstege / FASTMAP

ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing

image-segmentation imagej-plugins image-registration

Updated Mar 2, 2022
ImageJ Macro

ekatrukha / PTU_Reader

ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files

converter stack imagej imagej-plugins lifetime fiji-plugin utrecht-university pt3 picoquant

Updated Nov 19, 2020
Java

ekatrukha / KymoResliceWide

ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves

java imagej-plugins stacks fiji-plugin

Updated Nov 19, 2020
Java

josephzammit90 / ImageJ-Recon-Plugin-Java

ImageJ Plugin Library for 2D reconstruction (back-projection and filtered bp)

java imagej-plugins 2d-reconstruction

Updated Jun 18, 2019
Java

theresaswayne / stereology

ImageJ scripts for stereology and morphometry

imagej fiji image-analysis imagej-plugins fiji-plugin

Updated Jul 19, 2017
Python

thorstenwagner / ij-trajectory-classifier

This plugin segments and classify diffusion trajectories

tracking imagej fiji random-forest classification imagej-plugins diffusion fiji-plugin trajectory-classifier renjin

Updated Oct 9, 2017
Java

arttumiettinen / fast-thickmap-imagej

Fast local thickness map plugin for ImageJ/Fiji

image-processing image-analysis imagej-plugins fiji-plugin

Updated Apr 19, 2022
Java

Borda / ij-CMP-BIA

Sponsor

Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.

Updated Nov 12, 2016
Java

sedflix / Active-Contours-API-for-Fiji-ImageJ

This is an easy to use active contours api for Fiji(ImageJ).

imagej fiji imagej-plugins levelset fiji-plugin active-contour

Updated Jun 19, 2017
Java

pmascalchi / ImageJ_AutoClickerJ

A plugin to combine power of mouse and keyboard control with image processing and analysis tools in ImageJ

automation analysis imagej macros mouse automatic mousemove keystrokes automated imagej-plugins mouse-events keystroke-injection mouse-button automated-analysis fiji-plugin ijm imagej-macro macro-recorder macro-extension keyboard-controls

Updated Dec 30, 2017

WeisongZhao / AdaptiveMedian.imagej

v0.1.0, Adaptive Median fiter - imageJ plugin

java image image-processing filter-plugin imagej-plugins

Updated Nov 23, 2021
Java

dasv74 / orientationj

OrientationJ: ImageJ plugins for directional image analysis. ///// Reference: Z. Püspöki et al., "Transforms and Operators for Directional Bioimage Analysis: A Survey," Springer International Publishing, 2016.

imagej image-processing orientation image-analysis imagej-plugins

Updated Apr 25, 2018
Java

adines / DeepClas4BioIJ

ImageJ plugin that calls the API DeepClas4Bio

deep-learning imagej-plugins

Updated Feb 13, 2019
Java

sedflix / EmbryoSegmentation

An ImageJ PlugIn for cell segmentation in an embryo of c.elegans

machine-learning image-processing segmentation google-summer-of-code image-segmentation imagej-plugins fiji-plugin weka-api embryogenesis

Updated Feb 23, 2019
Java

AndySantisteban / snake-filter-imagej

Snake-filter

java netbeans imagej image-processing snake imagej-plugins

Updated Nov 17, 2021
Java

CiliaQ

hansenjn / CiliaQ

An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

imagej-plugins fluorescence-microscopy-imaging time-lapse-imaging cilia cilium ciliaq-workflow imagej-plugin confocal-images primary-cilia cilium-length ciliary-fluorescence

Updated Nov 29, 2021
Java

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