Chemical reaction balancing web service
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Updated
Sep 13, 2017 - Python
Chemical reaction balancing web service
Tool for the reconstruction of context-specific metabolic models based on omics data from several sources
Enzymatic Link Prediction
Metabolic pathway inference using non-negative matrix factorization with community detection
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
A pathologic file generator (PLFG) is implemented to assist and facilitate the curation progress of every computationally predicted pathway genome database (PGDB).
KEGG Module Evaluation Tool
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
a metabolic json parser and streamlit for BIGG database
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
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