Collect basic sequence QC metrics from nanopore reads
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Updated
Sep 7, 2023 - Nextflow
Collect basic sequence QC metrics from nanopore reads
Collect info about IRIDA uploads for display in monitoring site
Automated upload of sequence data to IRIDA platform
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site
A web UI for the fungal version of antiSMASH.
Any crazy idea of microbiology will be included in it.
Automated uploading of sequence data into IRIDA instances, used in conjunction with auto-irida-azure-upload
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
Nextflow Wrapper for Mykrobe
R Shiny App to show basic features of microbial genomes
Perform read mapping and variant calling using snippy
Small tools/scripts written in python
Bioinformatics pipeline used for the RCPA WGS PTP
A reference-free statistical approach to diversity-generating & mobile genetic element discovery
Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.
Taller introductorio orientado a la visualización, análisis estadístico y ecológico en R, dirigido al manejo de datos en investigación, e impartido para la PUC durante 2021.
Simulate genomic variation, based on input reference genomes
A GLUE project for comparative genomic analysis of circular Rep-encoding single-stranded DNA (CRESS DNA) viruses
Automated genomic analysis of SARS-CoV-2 sequence data
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