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May 15, 2018 - Python
pathway-analysis
Here are 18 public repositories matching this topic...
A wrapper around Bio2BEL HGNC for ComPath
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Jun 7, 2018 - Python
Snakemake pipeline to benchmark 11 functional pathway annotation systems
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Jun 30, 2022 - Python
Integration of pathway-related information from MSigDB in BEL
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Nov 18, 2020 - Python
Constellab brick for genome-scale metabolic modelling
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Sep 26, 2024 - Python
A web application for visualizing and exploring the consensus across pathway enrichment results
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Sep 26, 2021 - Python
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
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Nov 8, 2021 - Python
Harmonizing pathway databases using Biological Expression Language (BEL)
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Jul 1, 2024 - Python
VEGA: VAE Enhanced by Gene Annotations
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May 5, 2022 - Python
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
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Mar 31, 2023 - Python
Explore biomolecular pathways in Reactome from the command-line or a Python script
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Nov 19, 2023 - Python
A python library for programmatic usage of EBI InterPro Genome Properties.
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Apr 7, 2023 - Python
A Python package for benchmarking pathway database with functional enrichment and classification methods
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Mar 2, 2021 - Python
Overrepresentation analysis for KEGG and PID pathways using community detection
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Jan 7, 2018 - Python
Disease pathways in the human interactome
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Mar 20, 2018 - Python
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
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Feb 1, 2024 - Python
Testing, development environment for a new project of KN BIBS
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Oct 30, 2018 - Python
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
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Jul 7, 2022 - Python
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