Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
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Updated
May 6, 2022 - Jupyter Notebook
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
Single cell interactive plotting tools
Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans
So you want to do a: Single Cell RNA-seq experiment
An effective tool for single-cell RNA sequencing.
Gotta keep the brain empty to learn more. This is my easily digestible backup.
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
10x Cell Ranger Docker Image
Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data
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