Official git repository for Biopython (originally converted from CVS)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Versatile open-source tool for microbiome analysis
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Proof-of-concept seq-to-graph mapper and graph generator
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Align proteins to genomes with splicing and frameshift
A fast multiple sequence alignment program.
A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Genome wide orthology inference and dNdS estimation
Comparative Genomics Toolkit 3
Sequence alignment tools
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