This is the repository for the code of my Computer Science bachelor's degree final paper.
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Updated
Nov 16, 2018 - Python
This is the repository for the code of my Computer Science bachelor's degree final paper.
Suffix trees via Ukkonen's algorithm, as described by Gusfield
Algorithms code that I have worked on in Advanced Algorithm and Data Structure course in Monash Malaysia.
Substring Frequency Count using SuffixTree
Ranks text files given a query string on the basis of their relevance scores. Also displays all the occurrences of the given query string, the first occurrence and the longest matched substring if none is present. Implemented using Suffix Trees.
My solutions to problems of Code Jam 2021.
An assortment of scripts for parsing and understanding genetic code strings.
A Python implementation of suffix tree
A discrete maths project focusing on suffix trees
Note Sequence and Arrangement Classifier
Repositório para apresentação de código desenvolvido pelo grupo 2 para a UC Algoritmos Avançados para a Bioinformática do Mestrado em Bioinformática, ano lectivo 23-24.
Various algorithms and data structures on strings
Algorithms and Data Structures
Quick and Dirty implemetation of Google Instant Like Suggestions using Suffix Tree
Sternum is a python package to map next generation sequencing reads to a reference genome using optimized methods
Suffix tree implementation using Ukkonen's suffix tree construction algorithm. Sample program written to find all occurrences of a query_string and rank documents according to relevence
The research of accuracy of searching cycles methods in symbolic sequences (time series) with presence of random noises.
Ukkonen's suffix tree algorithm, a complete version implemented in Python
A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.
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