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README.md

A simple approach for maximizing the overlap of phylogenetic and comparative data

This repo contains tex files for our manuscript and R code to reproduce all example analyses. The paper describes two packages phyndr and taxonlookup (the source code for the packages are in their own repos; links above).

The analyses contained in the paper can be reproduced using the remake R package.

A vignette, which works through the basic functionality of both phyndr and taxonlookup, is available here.

## Install devtools if you do not have it
## install.packages("devtools")

## Install remake
devtools::install_github("richfitz/remake")

## Re-run the analysis with remake
remake::install_missing_packages()
remake::make()

This project is a collaboration between Matthew Pennell, Rich FitzJohn, and Will Cornwell.