This project is dead, go find bukkit
This project hasn't been updated in at least 5 years, Minecraft is a totally different beast that the one this project was intending to modify. It was super fun while it lasted, thanks for stopping by.
hMod is a server mod for the Minecraft Beta server software. This is only the source code, if you don't know how to use this you won't find it useful.
Add a new project from existing sources in whatever IDE you use. Add minecraft_servero.jar as a library, and mysql-connector-java-bin.jar if need be. Your IDE should compile .class files that you can copy over into a clean minecraft_server.jar, then you can test your changes.
You can get this file by running jarjar.bat in the jarjar folder and it will automaticly make minecraft_servero.jar