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R package for temporal phenotyping via topological data analysis and pseudo time

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trangdata/tdapseudotime

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Temporal phenotyping via topological data analysis

The {tdapseudotime} 📦 contains functions to implement the temporal phenotyping via topological data analysis of EHR COVID-19 data from the 4CE consortium.

You can install the development version of tdapseudotime from GitHub with remotes:

# install.packages('remotes') # uncomment to install devtools
remotes::install_github('trang1618/tdapseudotime')

For detailed instruction on how to deploy the TDA algorithm on your site data, please visit the vignettes – train or test depending on the site.

Please open an issue for questions related to tdapseudotime usage, bug reports or general inquiries.

Thank you very much for your support!

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R package for temporal phenotyping via topological data analysis and pseudo time

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