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@TNU-yaoy TNU-yaoy released this Sep 9, 2020

Version 4.0.0

This is a major release containing new toolboxes and tasks:

Added

  • ceode: Toolbox to integrate delay differential equations (DDEs) underlying convolution based Dynamic Causal Models for ERPs.
  • task/FDT: Filter Detection Task version 0.2.2
  • citation information

Changed

  • rDCM: version v1.2
  • HUGE: removed deprecated functions
  • external toolboxes are now managed as matlab packages

Fixed

  • Fixed name collision issue due to mcmcdiag toolbox (see issue 106)

Known issues

  • h2gf (beta): demo script currently does not work
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  • v3.3.0
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@TNU-yaoy TNU-yaoy released this Jul 21, 2020 · 1 commit to master since this release

Version 3.3.0

This version contains new features and bugfixes for HGF, PhysIO, SEM and HUGE

Added

  • h2gf: Hierarchical inference for the HGF, beta version released
  • SERIA: Added the Watanabe Akaike information criterion (WAIC) as output.
  • SERIA: Added computation of early and late response likelihood.
  • SERIA: Added delta plots to output summary.

Changed

  • HGF: v6.0 released
  • SERIA: The constraints matrix is now automatically plot by
    tapas_sem_\display_posterior.m
  • SERIA: Python code is now updated to python 3.7 and the requirement file
    now uses the latest libraries (numpy, scipy, cython).
  • SERIA: Posterior plots includes fits of the complete group.
  • SERIA: Summaries are automatically generated when preparing the posterior.
  • PhysIO: PhysIO Toolbox Release R2020a, v7.3.0
  • PhysIO: removed Matlab statistics toolbox dependency for PCA by SVD implementation (thanks to Benoît Beranger, pull request 64)

Fixed

  • HUGE: fixed tick labels

Known issues

  • TAPAS uses the mcmcdiag toolbox for Monte Carlo convergence diagnostics, which shadows a number of matlab built-in functions. Affected functions include: Contents.m, cusum.m, join.m and score.m. Workaround: If you use one of these functions in your own code, remove the tapas folder from your matlab path when you are not using the TAPAS toolbox.
Assets 3

@tnutapas tnutapas released this Aug 30, 2019 · 5 commits to master since this release

Tapas 3.2.0

This release includes changes to PhysIO and HUGE.

Added

  • HUGE: introduced object-oriented interface in addition to old interface
  • HUGE: build-in unit tests
  • HUGE: user manual
  • PhysIO (details in tapas/PhysIO/CHANGELOG.md)
    • more unit testing and integration testing for examples
    • bandpass-filtering for cardiac data in preprocessing, user-defined max
      heart rate for peak detection

Fixed

  • PhysIO: Bugfix RVT/HRV convolution had erroneous half-width shift

Changed

  • HUGE: demo script reflect interface changes
Assets 3

@tnutapas tnutapas released this Mar 26, 2019 · 5 commits to master since this release

This version contains improvements to several packages, including PHYSIO, HGF, Huge, rDCM and SERIA.

[3.1.0] 2019-03-26

Added

  • Get revision info from Matlab.
  • PhysIO R2018.1.2: BioPac txt-file reader (for single file, resp/cardiac/trigger data in different columns)
  • SERIA: Automatic plotting of the seria model.
  • SERIA: Example for single subject.

Fixed

  • Huge: minor bugs.

Changed

  • Huge: Improved documentation.
  • New version of the HGF toolbox (v5.3). Details in tapas/HGF/README.md
  • New version of the rDCM toolbox (v1.1). Details in tapas/rDCM/CHANGELOG.md.
  • New version of the PhysIO Toolbox (R2019a-v7.1.0)
    • BIDS and BioPac readers; code sorted in modules (readin, preproc etc.),
      also reflected in figure names
    • Updated and extended all examples, and introduced unit testing
    • Full details in tapas/PhysIO/CHANGELOG.md
  • Improved the documentation of SERIA.
Assets 3
Oct 19, 2018
Merge branch 'release-v3.0.1' into 'development'
Release v3.0.1

See merge request TNU/tapas!42
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@tnutapas tnutapas released this Sep 9, 2018 · 6 commits to master since this release

Tapas v3.0.0 is a new major release that includes updates to most of our toolboxes (HGF, MPDCM, PHYSIO, SEM) and two new toolboxes (HUGE, rDCM).

New:

  • HUGE: Variational Bayesian inversion for hierarchical unsupervised generative embedding (HUGE).
  • rDCM: DCM based, efficient inference on effective brain connectivity for fMRI.
Assets 3

@tnutapas tnutapas released this Jan 25, 2018 · 11 commits to master since this release

  • includes PhysIO R2017.3
    • new Readers: Human Connectome Project (HCP) and Siemens multiband (CMRR) WIP Physlog files
    • extended documentation and FAQ via Wiki
Assets 5

@tnutapas tnutapas released this Aug 17, 2017 · 15 commits to master since this release

This releases includes a new minor version of the HGF (5.1) and PhysIO toolbox as well as improvements to our documentation.

Highlights:

  • HGF 5.1.
  • Updates to the PhysIO toolbox.
  • Improved documentation.
Assets 3

@tnutapas tnutapas released this Jul 31, 2017 · 32 commits to master since this release

This release includes an updated version of the SERIA model.

Highlights

  • The SERIA late race model is implemented.
  • The underlying algorithm for computing the likelihood has been updated.
  • Includes examples to run the model.

Detailed release notes can be found in sem/README.md

Assets 3
May 19, 2017
HGF Toolbox 5.0