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  1. HyPhy: Hypothesis testing using Phylogenies

    HyPhy 73 40 Built by @spond @stevenweaver @sjspielman @nlhepler @ArtPoon
  2. bareflank example that provides msr bitmap support

    HyPhy 7 7 Built by @brendank310 @rianquinn
  3. Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (genes under positive selection) using CDS SNPs.

    HyPhy 7 7 Built by @mshakya @sanahmed @chienchi @poeli
  4. bareflank example that provides vpid support

    HyPhy 5 7 Built by @rianquinn @JWZepf
  5. Advent of Code 2015 in Befunge, days 1–3

    HyPhy 5 Built by @programble
  6. HyPhy 5 1 Built by @ausmeyer @clauswilke
  7. A collection of code in esoteric languages

    HyPhy 4 Built by @laboon
  8. HyPhy 4 1 Built by @josephryan @mdebiasse
  9. example of how to use the control register APIs using the Bareflank hypervisor and the Extended APIs

    HyPhy 4 1 Built by @rianquinn @scalys7
  10. HyPhy 3 Built by @hatobus
  11. Tests of selection incorporating multinucleotide mutations

    HyPhy 3 1 Built by @JoeThorntonLab
  12. Java bindings to the Sleuthkit open-source host forensics library/toolkit.

    HyPhy 3 1 Built by @tobermory @ScottWarner
  13. HyPhy 2 5 Built by @stevenweaver @spond @stephenshank @rdvelazquez @bitcore
  14. HyPhy: Hypothesis testing using Phylogenies

    HyPhy 2 40 Built by @spond @stevenweaver @sjspielman @nlhepler @ArtPoon
  15. HyPhy 2 1 Built by @nlhepler @mdsmith @spond @stevenweaver
  16. Desktop application for HyPhy

    HyPhy 2 5 Built by @rdvelazquez @stevenweaver @stephenshank
  17. Scripts and data for group publications

    HyPhy 2 Built by @spond
  18. HyPhy 2 Built by @jyrkas
  19. Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (genes under positive selection) using CDS SNPs.

    HyPhy 2 7 Built by @mshakya @sanahmed @chienchi @poeli
  20. Examples/patches etc created in response to HyPhy issues

    HyPhy 2 Built by @spond
  21. HyPhy 2 Built by @ausmeyer
  22. data for manuscript

    HyPhy 2 Built by @ausmeyer @hubgit @katrinleinweber @arfon @jjhoyt
  23. HyPhy 1 3 Built by @ofedrigo
  24. all my previous and current befunge projects will be here

    HyPhy 1 Built by @mikota
  25. 나 아이돌 그만둘래

    HyPhy 1 41 Built by @xnuk @yous @nthalpy @Suckzoo
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