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HyPhy: Hypothesis testing using Phylogenies
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Advent of Code 2015 in Befunge, days 1–3
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A collection of code in esoteric languages
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Java bindings to the Sleuthkit open-source host forensics library/toolkit.
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Tests of selection incorporating multinucleotide mutations
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HyPhy: Hypothesis testing using Phylogenies
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Desktop application for HyPhy
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data for manuscript
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Examples/patches etc created in response to HyPhy issues
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Scripts and data for group publications
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all my previous and current befunge projects will be here
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A collection of problems solved in Befunge
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Repository for manuscript "A comparison of one-rate and two-rate inference frameworks for site-specific dN/dS estimation" by SJS, SW, COW.
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Book chapter for upcoming Springer book Computational Methods in Protein Evolution
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Materials related to an article by Ralph Haygood, Olivier Fedrigo, and collaborators in 2007, particularly HyPhy Batch Language files
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