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Large scale Blast Score Ratio (BSR) analysis
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An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
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Pep8 example codes for UQAM-INF2170
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ML based prediction of immunogenic neoantigens for immunotherapy
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Automated classification of Translated Genomics Element
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Pipeline for generate Ks plots of transcriptome data.
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Trinity RNA-Seq workshop in Krumlov 2018
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The one where we reconstruct genomes from hypersaline mat metagenomes
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Trinity rna-seq workshop at the Ragon Institute, Sept. 2017
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A SLURM tool for performing parallel BLAST searches
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Training Manual for my Basic Introduction to Bioinformatics
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simple calculator, pep9
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A SLURM tool for performing parallel BLAST searches
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Large scale Blast Score Ratio (BSR) analysis
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Bipartite matching generalizations for peptide identification in tandem mass spectrometry
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rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materials
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2016-2018 geoduck eelgrass OA proteomics DNR project. Scripts and data files for reproducibility related to analysis, paper.
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Coursework from CSC 106 (Spring 2016) at UVic.