Trending

See what the GitHub community is most excited about today.

  1. Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

    wdl 47 21 Built by @bshifaw @vdauwera
  2. Workflows for germline short variant discovery with GATK4

    wdl 35 20 Built by @bshifaw @vdauwera @ruchim @indraniel
  3. Workflows for somatic short variant discovery with GATK4

    wdl 30 11 Built by @bshifaw @vdauwera @zyxue
  4. Workflows used for germline short variant discovery in WGS data

    wdl 22 9 Built by @bshifaw
  5. Workflows used in production at Broad for germline short variant discovery in WGS data

    wdl 22 7 Built by @bshifaw @vdauwera
  6. Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools

    wdl 21 6 Built by @ruchim @bshifaw
  7. Workflows for somatic copy number variant discovery with GATK4

    wdl 17 7 Built by @bshifaw @vdauwera
  8. Pipeline for structural variation detection in cohorts

    wdl 15 6 Built by @cc2qe @ernfrid
  9. Secondary analysis pipelines

    wdl 14 9 Built by @ambrosejcarr @jishuxu @rexwangcc @mckinsel @dshiga
  10. Variant Calling Pipeline in Cromwell/WDL

    wdl 8 4 Built by @lsmainzer @ramshankar1990 @jacobrh91 @mrweber2 @mken418
  11. Workflows for converting between sequence data formats

    wdl 6 1 Built by @vdauwera @bshifaw
  12. a place for topmed workflows

    wdl 5 10 Built by @wshands @mjkrause @DailyDreaming @vlada3292 @yilinxu
  13. bioinformatics pipelines

    wdl 4 2 Built by @antonkulaga
  14. wdl 4 3 Built by @aprabhak2 @psfoley @shivagopalan
  15. A collection of reusable WDL tasks. Category:Other

    wdl 3 2 Built by @rhpvorderman @ffinfo @DavyCats @johnmous @papanikos
  16. Improving deep learning variant calling methods for BGI-SEQ

    wdl 2 Built by @cschin @AndrewCarroll @DCGenomics @pichuan
  17. WDL for the ChIPseq pipeline

    wdl 2 Built by @egor-broad @dinvlad
  18. A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

    wdl 2 Built by @DavyCats @rhpvorderman @ffinfo
  19. Workflows for processing and variant discovery with GATK (v3+v4) optimized by Intel for on-premises infrastructure

    wdl 2 3 Built by @aprabhak2
  20. WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus

    wdl 2 3 Built by @mlin
  21. Miscellaneous workflows optimized by Intel to be fast-running

    wdl 2 Built by @aprabhak2 @knoblett
  22. wdl 2 3 Built by @bshifaw
  23. genomics and immunogenomics analysis pipelines

    wdl 2 1 Built by @chunjie-sam-liu @lydiaMyr @liulanlan812 @shimw6828
  24. development location for a wdl based germline pipeline with scatter gather parallelization

    wdl 2 1 Built by @oskarvid
  25. UofA BioWDL genomic workflows

    wdl 2 Built by @jimmybgammyknee
Other Languages
ProTip! Looking for recently updated wdl repositories? Try this search