• Trinity RNA-Seq de novo transcriptome assembly

    Perl 293 182 Updated Aug 19, 2018
  • Perl 1 Updated Aug 1, 2018
  • more extensive sample data for exploring various Trinity supported analysis modules

    Makefile 1 1 Updated Jul 31, 2018
  • Workshop in Bern, Switzerland in June, 2018

    Python Updated Jun 28, 2018
  • week-long Trinity workshop in Berlin, June 2018

    Shell Updated Jun 12, 2018
  • Perl 1 2 Updated May 30, 2018
  • milestones and momentos

    Updated Apr 10, 2018
  • R 4 Updated Mar 15, 2018
  • TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data

    Python 23 Updated Mar 8, 2018
  • Updated Feb 1, 2018
  • Trinity RNA-Seq workshop in Krumlov 2018

    Pep8 3 4 Updated Jan 16, 2018
  • Tracks software version usage via URL ping

    Updated Jan 8, 2018
  • makes a mini-genome, shrinks introns, useful for developing small test sets and small data sets for workshops

    Perl 1 Updated Nov 21, 2017
  • basic rna-seq tutorial, leveraging Trinity, StringTie, HISAT2, and IGV

    2 Updated Nov 12, 2017
  • rna-seq materials for the CSHL programming for biology series 2017

    2 Updated Oct 27, 2017
  • Trinity rna-seq workshop at the Ragon Institute, Sept. 2017

    Pep8 1 Updated Sep 12, 2017
  • Perl 4 Updated Jul 12, 2017
  • Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

    R 316 CC-BY-SA-4.0 Updated Jul 11, 2017
  • The wiki repo, with pull request enabled, for the rnaseq_tutorial

    Perl 15 Updated Jul 11, 2017
  • Scientific Environment for the Development of Pipeline Resources

    Python 2 Updated Jul 7, 2017
  • Updated Jun 20, 2017
  • workshop in Berlin, mid-June 2017

    Python 4 3 Updated Jun 12, 2017
  • Error correction for Illumina RNA-seq reads

    C++ 9 GPL-3.0 Updated Apr 14, 2017
  • Toolkit for processing sequences in FASTA/Q formats

    C 147 MIT Updated Jan 28, 2017
  • Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2017

    Perl 3 1 Updated Jan 6, 2017
  • Trinityrnaseq website

    JavaScript 1 2 Updated Jan 5, 2017
  • Reads simulator

    C 61 Updated Nov 29, 2016
  • materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.

    Perl 20 21 Updated Oct 17, 2016
  • workshop in Bern, Switzerland in Oct 2016

    Python 1 5 Updated Oct 14, 2016
  • rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materials

    Perl 2 2 Updated Sep 3, 2016