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  1. trinityrnaseq trinityrnaseq Public

    Trinity RNA-Seq de novo transcriptome assembly

    Perl 810 316

  2. RNASeq_Trinity_Tuxedo_Workshop RNASeq_Trinity_Tuxedo_Workshop Public

    materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.

    Perl 46 30

  3. KrumlovTrinityWorkshopJan2016 KrumlovTrinityWorkshopJan2016 Public

    Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016

    Perl 7 5

  4. BerlinTrinityWorkshop2017 BerlinTrinityWorkshop2017 Public

    workshop in Berlin, mid-June 2017

    Python 6 3

  5. EMBOtrinityWorkshopSept2016 EMBOtrinityWorkshopSept2016 Public

    rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materials

    Perl 5 3

  6. RagonInst_Sept2017_Workshop RagonInst_Sept2017_Workshop Public

    Trinity rna-seq workshop at the Ragon Institute, Sept. 2017

    Pep8 5 1

Repositories

Showing 10 of 47 repositories
  • TrinityFusion Public

    TrinityFusion software

    trinityrnaseq/TrinityFusion’s past year of commit activity
    Perl 5 1 3 0 Updated Jun 27, 2024
  • trinityrnaseq Public

    Trinity RNA-Seq de novo transcriptome assembly

    trinityrnaseq/trinityrnaseq’s past year of commit activity
    Perl 810 BSD-3-Clause 316 277 0 Updated May 17, 2024
  • bamsifter Public

    normalizes coverage depth by position-specific read sampling in a bam file to give a target max depth

    trinityrnaseq/bamsifter’s past year of commit activity
    C++ 2 5 3 0 Updated Apr 16, 2024
  • minigenome Public

    makes a mini-genome, shrinks introns, useful for developing small test sets and small data sets for workshops

    trinityrnaseq/minigenome’s past year of commit activity
    Perl 3 0 0 0 Updated Apr 5, 2024
  • keepsakes Public

    milestones and momentos

    trinityrnaseq/keepsakes’s past year of commit activity
    0 0 0 0 Updated Mar 18, 2024
  • trinityrnaseq/CSHLProgForBio’s past year of commit activity
    Python 2 0 0 0 Updated Oct 24, 2023
  • trinity_ext_sample_data Public

    more extensive sample data for exploring various Trinity supported analysis modules

    trinityrnaseq/trinity_ext_sample_data’s past year of commit activity
    Go 5 4 0 1 Updated Sep 26, 2023
  • Chrysalis Public

    Chrysalis codebase

    trinityrnaseq/Chrysalis’s past year of commit activity
    C++ 0 3 0 1 Updated May 30, 2023
  • KrumlovTrinityWorkshopMay2023 Public

    The first edition of the abridged version of the workshop

    trinityrnaseq/KrumlovTrinityWorkshopMay2023’s past year of commit activity
    0 1 0 0 Updated May 23, 2023
  • KrumlovTrinityWorkshopMay2022 Public

    Krumlov Trinity Workshop, May 2022

    trinityrnaseq/KrumlovTrinityWorkshopMay2022’s past year of commit activity
    Perl 3 1 0 0 Updated May 30, 2022

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