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Introduction to Transcriptomics
Welcome to the workshop on transcriptomics at the Ragon Institute!
We will be following the tutorials listed in the panel on the right, first targeting de novo transcriptome assembly using Trinity, and then genome-guided transcriptome assembly using StringTie or Trinity in genome-guided mode.
Transcriptome sequencing technologies
Illumina sequencing by synthesis
PacBio SMRT Sequencing
Oxford Nanopore Sequencing
Conventions used in tutorials
cmd to run
% cmd to execute
% sometimes commands are long and will go \ across several lines
results shown in blocks below the commands, after a '.' marker.
Viewing results via apache link