Trinity RNA-Seq de novo transcriptome assembly
Branch: devel
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Merge branch 'devel' of into devel
Latest commit a98e1ad Feb 20, 2019
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Analysis modernized for gatk4 Dec 14, 2018
Butterfly bfly adjustments to endgap alignments & repeat node path DAG construc… Apr 11, 2018
Chrysalis removed -march=native setting from cmakelists Sep 5, 2018
Docker patch release v2.8.4 Sep 12, 2018
Inchworm add column headers, reorg output Sep 21, 2018
PerlLib improved error tracking during normalization Feb 12, 2019
PyLib setting STAR SAgeneindex param based on target database size Aug 26, 2018
bioconda_recipe/trinity not incl reads there Aug 15, 2018
sample_data add Sep 26, 2018
trinity-plugins Load CC and CXX from environment variable as a default behavior. Dec 13, 2018
trinity_ext_sample_data @ 89f8bfb use expr weighted gene lengths in ExN50 calc Feb 20, 2019 @ 7c82d56 improved error tracking during normalization Feb 12, 2019
util pullmerge Feb 20, 2019
.gitignore Merge files from master branch. Dec 13, 2018
.gitmodules adding trinity_ext_sample_data as submodule Sep 17, 2017
.travis.yml Update .travis.yml Dec 13, 2018
Changelog.txt updated changelog in prep for release v2.8.0 Aug 13, 2018
LICENSE Initial commit Aug 7, 2014
LICENSE.txt initial import Jan 11, 2015
Makefile use TRINITY_HOME env var for tests w/ bioconda Aug 14, 2018
README Update to the new URL Oct 19, 2015 Change README build status image badge's branch from master to devel. ( Dec 19, 2018
Trinity Fix java version parsing error for oraclejdk9. Dec 13, 2018 add script to populate ext sample data as needed Sep 17, 2017
notes update, added release info via github api May 24, 2015


Build Status install with bioconda

Trinity RNA-Seq de novo transcriptome assembly see the main webpage


We encourage you to contribute to Trinity! Please check out the Contributing for the guidelines.