@brianjohnhaas brianjohnhaas released this Aug 15, 2018 · 7 commits to master since this release

Assets 2

minor adjustments to more easily support bioconda integration

@brianjohnhaas brianjohnhaas released this Aug 13, 2018 · 27 commits to master since this release

Assets 2

-now using cmake for Inchworm and Chrysalis builds
-new option '--include_supertranscripts' to output the supertranscripts in addition to the Trinity.fasta file.
-Updates for improved handling of non-strand-specific RNA-Seq and high polymorphism containing transcriptomes. (from v2.7.0-prerelease)

minor update... when running 'make' the installer now finds the chrysalis binaries in the right place. This is a cosmetic update. No change in function from v2.8.0

Aug 13, 2018
updated changelog in prep for release v2.8.0

@brianjohnhaas brianjohnhaas released this Jul 8, 2018 · 62 commits to master since this release

Assets 2

Updates for improved handling of non-strand-specific RNA-Seq and high polymorphism containing transcriptomes.

@brianjohnhaas brianjohnhaas released this Mar 12, 2018 · 151 commits to master since this release

Assets 3

-minor updates to trinity gene splice modeler for python-3 compatibility
-update to R command execution that improves use on computing grids.

@brianjohnhaas brianjohnhaas released this Feb 13, 2018 · 173 commits to master since this release

Assets 3

Release v2.6.5

-incorporates salmon for quick expression estimates and filtering of likely artifacts
-drops bundling of jellyfish and samtools - now leverages user-installed versions of tools.
-overhauled supertranscript module, improvements around high-polymorphism situations.
-updated variant detection module, more flexible around STAR alignments and GATK usage
-misc bug fixes

(file: Trinity-v2.6.5.wExtSampleData.tar.gz includes additional sample data for testing Trinity protocol modules)

@brianjohnhaas brianjohnhaas released this Feb 7, 2018 · 191 commits to devel since this release

Assets 2

various bugfixes, revision of supertranscript module to improve compaction, expression-driven auto-filtering of likely artifacts

trinity 3rd party plugin components revised: jellyfish and samtools no longer bundled. Additional requirement of salmon.

Salmon v0.9.1 specifically required (or can run with --no_salmon to skip expression-based filtering)

Feb 6, 2018
assume modern g++
Feb 2, 2018
removed check for jellyfish and samtools on make
Oct 20, 2017
synch w/ devel for changelog
Merge branch 'devel' of github.com:trinityrnaseq/trinityrnaseq