diff --git a/README b/README index daee9d4..aec3355 100644 --- a/README +++ b/README @@ -29,7 +29,10 @@ relevant calculations, and generating the referenced figures. 4. Your R installation must include the ggplot2 package, http://had.co.nz/ggplot2/ -5. Emacs Speaks Statistics (ESS) provides support for communication +5. The ability to jump to bibliographic entries from citations in the + Org-mode file depends on ebib, http://ebib.sourceforge.net/ + +6. Emacs Speaks Statistics (ESS) provides support for communication between Emacs and a persistent R process. To install ESS download the source code from http://ess.r-project.org/ -- this paper was tested with version 5.13. Unpack the download into a directory on @@ -37,20 +40,21 @@ relevant calculations, and generating the referenced figures. of init.el in this directory to point to your local ess/lisp/ directory. -6. Alternatively, follow steps 6 through 9 or call make from within - the directory that holds colonization.org. +7. Alternatively, follow steps 8 through 11 or call make from within + the directory that holds colonization.org. The make program will + create the file colonization.pdf. -7. From the command line, cd into the directory that holds colonization.org +8. From the command line, cd into the directory that holds colonization.org and then launch Emacs using the following command : emacs -Q -l init.el colonization.org -8. The resulting Emacs window will be visiting the Org-mode file, +9. The resulting Emacs window will be visiting the Org-mode file, colonization.org. From here it is possible to navigate and edit the document, and to inspect and evaluate source code blocks. -9. Export the document to LaTeX with the M-x org-export-as-latex +10. Export the document to LaTeX with the M-x org-export-as-latex command---just press RET in reply to queries from R. -10. The resulting colonization.tex file can be built from the command line +11. The resulting colonization.tex file can be built from the command line with pdflatex and bibtex.