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🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
🍺🔬 Bioinformatics formulae for the Homebrew and Linuxbrew package managers
🍻 Default formulae for the missing package manager for macOS
Conda recipes for the bioconda channel.
⚡️ ♒️ Rapid prokaryotic genome annotation
🆔 Scan contig files against PubMLST typing schemes
✂️ ⚡️ Rapid haploid variant calling and core genome alignment
🔬 ♌️ Bacterial ribosomal RNA predictor
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
Assembly based core genome SNP alignments for bacteria
Mock repository for Sanger publications citing Croucher et al
Pairwise SNP distance matrix from a FASTA sequence alignment
💾 📃 "Reads to report" for public health and clinical microbiology
Convert various sequence formats to FASTA
❄️ Scientific formulae for Homebrew and Linuxbrew (legacy)
Torsten Seemann's Home Page
Faster SPAdes assembly of Illumina reads
Predict plasmids from uncorrected long read data
Salmonella serotyping from genome sequencing data
🍗⭐ In silico Legionella pneumophila Sequence Based Typing
ASMNGS18 - 2018 Conference Details
Toolkit for processing sequences in FASTA/Q formats
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Small pure Perl5 libraries for writing command line bioinformatics tools
Filter SAM file for soft and hard clipped alignments
Annotate your metagenome assemblies
Fix homopolymer errors in Pacbio assemblies using Illumina data
A non-Java alternative to the classic FastQC tool
🍺 🐧 Homebrew formulae for bioinformatics software only available for Linux
Collapse sequence homopolymers to a single character