Block or report user

Report or block tseemann

Hide content and notifications from this user.

Contact Support about this user’s behavior.

Report abuse

Organizations

@Victorian-Bioinformatics-Consortium

A fuzzy Bruijn graph approach to long noisy reads assembly

C 124 24 Updated Nov 19, 2018

A lightweight biological sequence parsing/handling library for Perl 5

Perl 1 Updated Jun 19, 2018

Simple tool to verticalize text delimited files.

C 29 2 Updated Jul 29, 2018

Get SRA accessions from nucleotide accessions, assuming the authors did the right thing and made the data available

R 5 1 Updated Sep 18, 2018

Resumes generated using the GitHub informations

JavaScript 38,473 1,013 Updated Nov 17, 2018

Benchmark datasets for WGS analysis

Perl 19 6 Updated Jan 29, 2018

Fast Whole-Genome Similarity (ANI) Estimation

C++ 47 5 Updated Aug 11, 2018

Conda recipes for the bioconda channel.

Shell 840 892 Updated Nov 19, 2018

🍺🔬 Bioinformatics formulae for the Homebrew and Linuxbrew package managers

Ruby 95 39 Updated Nov 19, 2018

Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees

C++ 5 1 Updated Sep 20, 2018

❄️ Scientific formulae for Homebrew and Linuxbrew (legacy)

Ruby 86 42 Updated Nov 1, 2018

A Python library for interacting with ENA's API

Python 10 2 Updated Oct 22, 2017

MUMmer3

C++ 2 2 Updated Aug 14, 2017

A versatile pairwise aligner for genomic and spliced nucleotide sequences

C 412 94 Updated Nov 18, 2018

Updated Kraken DB install scripts to cope with new-ish NCBI structure

Perl 32 12 Updated May 18, 2017

Phylogenetics between and within hosts at once, all along the genome.

R 16 5 Updated Nov 16, 2018

Global alignment and alignment extension

C 63 10 Updated Sep 11, 2018

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

C++ 20 10 Updated Oct 5, 2017

Data mining and analysis pipeline for complete bacterial genome assemblies from NCTC3000 and RefSeq

Python 3 Updated May 17, 2017

find exactly matching contigs in a genome

Go 2 1 Updated Jun 15, 2017

Interactive, web tool for exploring pan-genome of bacterial strains

JavaScript 23 5 Updated Sep 20, 2018

Generate polished résumés and CVs in HTML, Markdown, LaTeX, MS Word, PDF, plain text, JSON, XML, YAML, smoke signal, and carrier pigeon.

JavaScript 8,391 468 Updated Aug 24, 2018
Python 16 1 Updated Mar 5, 2017

De novo estimates of genetic relatedness from next-gen sequencing data

C++ 30 1 Updated Jul 7, 2017

Eukaryotic Genome Annotation Pipeline

Python 63 22 Updated Oct 26, 2018

GFF and GTF file manipulation and interconversion

Python 101 38 Updated Jul 15, 2018

Biology formulae for the Homebrew package manager

Ruby 2 1 Updated Sep 17, 2018

displays multiple genomic sequences in the form of a tube map

JavaScript 66 7 Updated Nov 16, 2018

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

C++ 36 2 Updated Nov 14, 2018

SPAdes Genome Assembler

98 25 Updated Oct 16, 2018