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31 Open 167 Closed
31 Open 167 Closed
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Issues list

Discrepancies in diversity after recapitation and mutation overlay
#340 opened Feb 12, 2024 by AudeCaizergues
1
default sex ratio 0.0
#339 opened Feb 2, 2024 by petrelharp
1
update quickreference list at top of docs
#338 opened Dec 13, 2023 by petrelharp
Potential to use .frequencies() method in /tutorial.html
#336 opened Nov 16, 2023 by hyanwong
Annotating tree sequence with pre-existing (node) metadata can lead to erroneous metadata
#327 opened Aug 22, 2023 by clwgg
1
release tasks
#323 opened Aug 1, 2023 by petrelharp
17 tasks
test on annotating tsinfer'ed tree sequence
#317 opened Jun 26, 2023 by petrelharp
provide example of annotating existing mutations
#316 opened Jun 26, 2023 by petrelharp
tsinfered tree sequences don't have 'type' key in top-level metdata but set_tree_sequence_metadata expects they do
#315 opened Jun 25, 2023 by petrelharp
fixup XY annotation example documentation enhancement New feature or request
#223 opened Dec 15, 2021 by petrelharp v1.0
test running .py files in SLiM recipes tests
#220 opened Dec 13, 2021 by petrelharp v1.1
2
Vignettes as "tutorials" on tskit.dev/tutorials?
#212 opened Dec 7, 2021 by hyanwong
1
use table.metadata_vector( ) in docs enhancement New feature or request
#209 opened Nov 17, 2021 by petrelharp v1.1
add _X and _Y tests tests
#202 opened Sep 16, 2021 by petrelharp v1.0
tutorial for tracking lineages across space documentation
#195 opened Aug 25, 2021 by petrelharp
add citation.cff
#188 opened Jul 29, 2021 by petrelharp
wrap union to deal with SLiM metadata
#169 opened May 11, 2021 by mufernando v1.1
4
add example of using "retain" in the tutorial
#152 opened Mar 5, 2021 by petrelharp
2 tasks
switch to .github/workflows from .circleci
#145 opened Feb 20, 2021 by petrelharp
1
2
Documentation: confusion between pedigree and genetic ancestry?
#126 opened Jan 18, 2021 by hyanwong
3
tutorial feature: spatial analysis documentation
#122 opened Jan 12, 2021 by bhaller
3
add CI step that runs stdpopsim tests tests
#111 opened Dec 8, 2020 by grahamgower v1.0
@andrewkern
2
annotate_mutations enhancement New feature or request
#103 opened Sep 16, 2020 by petrelharp v1.1
2
a tree-sequence-validation feature inside pyslim would be useful
#62 opened Jan 31, 2020 by bhaller v1.1
4
write method to emit SLiM reload script
#60 opened Jan 28, 2020 by petrelharp v1.1
1
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