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'mutation' mode for statistics

Status: Open.

#3299 In tskit-dev/tskit;

· petrelharp opened on Oct 16, 2025

decoding struct metadata does not check for proper length

Status: Open.

#3254 In tskit-dev/tskit;

· petrelharp opened on Aug 12, 2025

<code>set_columns</code> recodes metadata schema

Status: Open.

#3249 In tskit-dev/tskit;

· petrelharp opened on Aug 7, 2025

get shared tree across an interval

Status: Open.

#3238 In tskit-dev/tskit;

· petrelharp opened on Jul 2, 2025

add method to transform coordinates by a RateMap

Status: Open.

#3213 In tskit-dev/tskit;

· petrelharp opened on Jun 11, 2025

<code>allele_frequency_spectrum</code> with a 1-d sample set throws uninformative error

bugSomething isn't workingSomething isn't working

Status: Open.

#3083 In tskit-dev/tskit;

· petrelharp opened on Jan 25, 2025

allow non-sample nodes for the "right hand side" on <code>genetic_relatedness_vector</code>

Status: Open.

#3062 In tskit-dev/tskit;

· petrelharp opened on Nov 21, 2024

add a docs section discussing operations with the relatedness matrix

Status: Open.

#3020 In tskit-dev/tskit;

· petrelharp opened on Oct 15, 2024

document how to compute "per-variant-site" instead of "per-site" statistics

documentationDocumentationDocumentation

statistics

Status: Open.

#1914 In tskit-dev/tskit;

· petrelharp opened on Nov 15, 2021

specify samples by population name

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#1697 In tskit-dev/tskit;

· petrelharp opened on Sep 13, 2021

· 

Python upcoming

<code>tskit.write_ms</code> is not documented

documentationDocumentationDocumentation

Status: Open.

#1464 In tskit-dev/tskit;

· petrelharp opened on May 24, 2021

allele frequency function

enhancementNew feature or requestNew feature or request

futureIssues that are closed as they are not planned in the medium-term, but which are still desirable.Issues that are closed as they are not planned in the medium-term, but which are still desirable.

Python APIIssue is about the Python APIIssue is about the Python API

statistics

Status: Open.

#504 In tskit-dev/tskit;

· petrelharp opened on Mar 30, 2020