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@ucdavis-bioinformatics

UC Davis Bioinformatics Core

scythe

forked from vsbuffalo/scythe

A 3'-end adapter contaminant trimmer

Updated Jun 16, 2016

Python 0 0

biocore-tools

Collection of scripts and tools used within the UC Davis Bioinformatics Core

Updated Jun 8, 2016

Perl 5 5

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

Updated May 14, 2015

sickle

forked from najoshi/sickle

Windowed Adaptive Trimming for fastq files using quality

Updated Feb 25, 2015

PBcR-testing

framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly

Updated Apr 23, 2013

sabre

forked from najoshi/sabre

A barcode demultiplexing and trimming tool for FastQ files

Updated May 30, 2012

qrqc

forked from vsbuffalo/qrqc

Quick Read Quality Control

Updated May 30, 2012

Python 7 3

alignerviz

forked from vsbuffalo/alignerviz

A simple tool to visualize sequences using Vlachos et al's technique

Updated Feb 10, 2011

Python 2 5

sam2counts

forked from vsbuffalo/sam2counts

Count number of mapped reads per reference in SAM files (often for RNA-Seq experiments)

Updated Oct 25, 2010

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