@ucdavis-bioinformatics

UC Davis Bioinformatics Core

  • Given a set of Pac Bio cells, generate fofn needed for assembly and statistics

    Python Updated Nov 29, 2016
  • Collection of scripts and tools used within the UC Davis Bioinformatics Core

    Python 1 Updated Jul 27, 2016
  • template for bioinformatics workshop documentation using jekyll + markdown

    Updated Jul 21, 2016
  • A 3'-end adapter contaminant trimmer

    TeX 8 24 Updated Jun 16, 2016
  • collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

    Perl 6 5 Updated May 14, 2015
  • sickle

    Forked from najoshi/sickle

    Windowed Adaptive Trimming for fastq files using quality

    C 17 51 Updated Feb 24, 2015
  • framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly

    1 Updated Apr 23, 2013
  • sabre

    Forked from najoshi/sabre

    A barcode demultiplexing and trimming tool for FastQ files

    C 1 7 Updated May 30, 2012
  • qrqc

    Forked from vsbuffalo/qrqc

    Quick Read Quality Control

    R 4 6 Updated May 30, 2012
  • A simple tool to visualize sequences using Vlachos et al's technique

    Python 7 3 Updated Feb 9, 2011
  • Count number of mapped reads per reference in SAM files (often for RNA-Seq experiments)

    Python 2 5 Updated Oct 25, 2010
  • 0

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