{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":651732996,"defaultBranch":"main","name":"2023-June-Single-Cell-RNA-Seq-Analysis","ownerLogin":"ucdavis-bioinformatics-training","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-06-10T00:03:30.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/23511024?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1687307786.324615","currentOid":""},"activityList":{"items":[{"before":"a0e3621790b155938018cef11b558aa8453d6358","after":"b569458fe0a15d428d129633bd6db1f4f0526f50","ref":"refs/heads/main","pushedAt":"2023-07-28T19:55:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hslyman","name":"Hannah Lyman","path":"/hslyman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2908522?s=80&v=4"},"commit":{"message":"testing","shortMessageHtmlLink":"testing"}},{"before":"0d19f39ae295ed28736b2195b58551014a963589","after":"a0e3621790b155938018cef11b558aa8453d6358","ref":"refs/heads/main","pushedAt":"2023-06-23T00:40:23.402Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"P6","shortMessageHtmlLink":"P6"}},{"before":"b2aff83f5f4989e3e923058abfd915c7ec8001c7","after":"0d19f39ae295ed28736b2195b58551014a963589","ref":"refs/heads/main","pushedAt":"2023-06-22T19:54:31.796Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"P7","shortMessageHtmlLink":"P7"}},{"before":"1f2ff003eac4ef86e406f74a3a5ab7d665c0cb0a","after":"b2aff83f5f4989e3e923058abfd915c7ec8001c7","ref":"refs/heads/main","pushedAt":"2023-06-22T18:54:35.311Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"P6&7","shortMessageHtmlLink":"P6&7"}},{"before":"e40e35132f836e10bf76c7e4b79e4d888669ff20","after":"1f2ff003eac4ef86e406f74a3a5ab7d665c0cb0a","ref":"refs/heads/main","pushedAt":"2023-06-22T16:03:06.182Z","pushType":"push","commitsCount":1,"pusher":{"login":"hslyman","name":"Hannah Lyman","path":"/hslyman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2908522?s=80&v=4"},"commit":{"message":"ScoreJackStraw","shortMessageHtmlLink":"ScoreJackStraw"}},{"before":"bcd81e4ac18c5bb2facae62233b5dc7e14d71565","after":"e40e35132f836e10bf76c7e4b79e4d888669ff20","ref":"refs/heads/main","pushedAt":"2023-06-22T02:56:33.662Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"Part7","shortMessageHtmlLink":"Part7"}},{"before":"3e4f2df1483b309fc6d5adda28a8477212280eaa","after":"bcd81e4ac18c5bb2facae62233b5dc7e14d71565","ref":"refs/heads/main","pushedAt":"2023-06-22T02:55:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"Part7","shortMessageHtmlLink":"Part7"}},{"before":"fa07daa5eafda853156b26bb5a6159862576a07d","after":"3e4f2df1483b309fc6d5adda28a8477212280eaa","ref":"refs/heads/main","pushedAt":"2023-06-22T02:51:27.025Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"Part7","shortMessageHtmlLink":"Part7"}},{"before":"5d693f2ef8e574612b48e2aeb7bea891fc331f87","after":"fa07daa5eafda853156b26bb5a6159862576a07d","ref":"refs/heads/main","pushedAt":"2023-06-22T02:47:01.886Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"Part7","shortMessageHtmlLink":"Part7"}},{"before":"9bc66336563382957022b828a360e72e8af3311c","after":"5d693f2ef8e574612b48e2aeb7bea891fc331f87","ref":"refs/heads/main","pushedAt":"2023-06-21T16:58:20.892Z","pushType":"push","commitsCount":1,"pusher":{"login":"hslyman","name":"Hannah Lyman","path":"/hslyman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2908522?s=80&v=4"},"commit":{"message":"add tidyr and viridis","shortMessageHtmlLink":"add tidyr and viridis"}},{"before":"68fff2b3487119671266783f18fb5a47da8a6ac0","after":"9bc66336563382957022b828a360e72e8af3311c","ref":"refs/heads/main","pushedAt":"2023-06-21T00:36:45.928Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Delete unnamed-chunk-3-1.png\n\nold","shortMessageHtmlLink":"Delete unnamed-chunk-3-1.png"}},{"before":"3e3e924a820822f0f36f508793ab5a2966b9750b","after":"68fff2b3487119671266783f18fb5a47da8a6ac0","ref":"refs/heads/main","pushedAt":"2023-06-21T00:36:26.229Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Add files via upload","shortMessageHtmlLink":"Add files via upload"}},{"before":"28a49c434c1e7b109ea61c11447b547c90a83948","after":"3e3e924a820822f0f36f508793ab5a2966b9750b","ref":"refs/heads/main","pushedAt":"2023-06-21T00:35:30.954Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Add files via upload","shortMessageHtmlLink":"Add files via upload"}},{"before":"d32b7ea94496a33ea40fde88e561e51e72d28e7b","after":"28a49c434c1e7b109ea61c11447b547c90a83948","ref":"refs/heads/main","pushedAt":"2023-06-20T23:31:23.384Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Delete data_analysis/scRNA_Workshop-PART6_with_quizzes_files/figure-html directory","shortMessageHtmlLink":"Delete data_analysis/scRNA_Workshop-PART6_with_quizzes_files/figure-h…"}},{"before":"56a3ae6d0ef2bc25e38ccc3ebd53268a01cd79d6","after":"d32b7ea94496a33ea40fde88e561e51e72d28e7b","ref":"refs/heads/main","pushedAt":"2023-06-20T23:30:26.382Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Delete scRNA_Workshop-PART6_with_quizzes.md\n\nOld","shortMessageHtmlLink":"Delete scRNA_Workshop-PART6_with_quizzes.md"}},{"before":"a49d32b5bdacaa237388f2c91197d4af0ecdadbf","after":"56a3ae6d0ef2bc25e38ccc3ebd53268a01cd79d6","ref":"refs/heads/main","pushedAt":"2023-06-20T23:28:49.964Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Delete scRNA_Workshop-PART6_with_quizzes.Rmd\n\nOld","shortMessageHtmlLink":"Delete scRNA_Workshop-PART6_with_quizzes.Rmd"}},{"before":"051ef36e0c586b9f022aa1139fc3d1859ad6a7c4","after":"a49d32b5bdacaa237388f2c91197d4af0ecdadbf","ref":"refs/heads/main","pushedAt":"2023-06-20T23:26:32.149Z","pushType":"push","commitsCount":2,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/ucdavis-bioinformatics-training/2023-June-Single-Cell-RNA-Seq-Analysis into main","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/ucdavis-bioinformatics-trai…"}},{"before":"eb74fd9d2498ce239f9b2918827fc173eedaf62d","after":"051ef36e0c586b9f022aa1139fc3d1859ad6a7c4","ref":"refs/heads/main","pushedAt":"2023-06-20T23:25:33.913Z","pushType":"push","commitsCount":2,"pusher":{"login":"hslyman","name":"Hannah Lyman","path":"/hslyman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2908522?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/ucdavis-bioinformatics-training/2023-June-Single-Cell-RNA-Seq-Analysis","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/ucdavis-bioinformatics-trai…"}},{"before":"a7d558f9c95930b4ad5f1d668f0c19b81e977031","after":"eb74fd9d2498ce239f9b2918827fc173eedaf62d","ref":"refs/heads/main","pushedAt":"2023-06-20T23:25:08.213Z","pushType":"push","commitsCount":3,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/ucdavis-bioinformatics-training/2023-June-Single-Cell-RNA-Seq-Analysis into main","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/ucdavis-bioinformatics-trai…"}},{"before":"b344926d240776956d638aeaf19074bbca922400","after":"a7d558f9c95930b4ad5f1d668f0c19b81e977031","ref":"refs/heads/main","pushedAt":"2023-06-20T23:22:48.622Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Delete scRNA_Workshop-PART5_fixed.md\n\nNot being used","shortMessageHtmlLink":"Delete scRNA_Workshop-PART5_fixed.md"}},{"before":"a6f42b58bd07925d1990cd74fb1504af7aac5ff6","after":"b344926d240776956d638aeaf19074bbca922400","ref":"refs/heads/main","pushedAt":"2023-06-20T23:22:26.092Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Delete scRNA_Workshop-PART5.md\n\nNot being used","shortMessageHtmlLink":"Delete scRNA_Workshop-PART5.md"}},{"before":"cd26a1c7d8e89c894e3869103da7c2d94c48093b","after":"a6f42b58bd07925d1990cd74fb1504af7aac5ff6","ref":"refs/heads/main","pushedAt":"2023-06-20T23:21:12.830Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Delete data_analysis/scRNA_Workshop-PART5_files/figure-html directory\n\nNot used in current part 5","shortMessageHtmlLink":"Delete data_analysis/scRNA_Workshop-PART5_files/figure-html directory"}},{"before":"75a854bc731258addc1a79724b3512b756f1d2da","after":"cd26a1c7d8e89c894e3869103da7c2d94c48093b","ref":"refs/heads/main","pushedAt":"2023-06-20T23:20:12.698Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Delete scRNA_Workshop-PART5_with_quizzes.Rmd\n\nNot actually used at any point","shortMessageHtmlLink":"Delete scRNA_Workshop-PART5_with_quizzes.Rmd"}},{"before":"409f8bffe552f5fc2fb977a3c3febdd4717a8c1f","after":"75a854bc731258addc1a79724b3512b756f1d2da","ref":"refs/heads/main","pushedAt":"2023-06-20T23:17:57.039Z","pushType":"push","commitsCount":2,"pusher":{"login":"hslyman","name":"Hannah Lyman","path":"/hslyman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2908522?s=80&v=4"},"commit":{"message":"correct cellranger-counts.sh to cellranger-counts.slurm\n\nMerge branch 'main' of https://github.com/ucdavis-bioinformatics-training/2023-June-Single-Cell-RNA-Seq-Analysis","shortMessageHtmlLink":"correct cellranger-counts.sh to cellranger-counts.slurm"}},{"before":"4c72c09aeab195f25874fbc993946c4b732335c3","after":"409f8bffe552f5fc2fb977a3c3febdd4717a8c1f","ref":"refs/heads/main","pushedAt":"2023-06-20T23:16:22.160Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"efa618b6afb68d606df7847bc58dacef6c99252f","after":"4c72c09aeab195f25874fbc993946c4b732335c3","ref":"refs/heads/main","pushedAt":"2023-06-20T23:13:46.304Z","pushType":"push","commitsCount":1,"pusher":{"login":"jessyjli","name":null,"path":"/jessyjli","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23542954?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"796bf54b4b482cd223e922c992ebd3eb5b5a50f5","after":"efa618b6afb68d606df7847bc58dacef6c99252f","ref":"refs/heads/main","pushedAt":"2023-06-20T23:11:33.261Z","pushType":"push","commitsCount":1,"pusher":{"login":"bpdurbin","name":null,"path":"/bpdurbin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29388212?s=80&v=4"},"commit":{"message":"Adding additional packages for part 5","shortMessageHtmlLink":"Adding additional packages for part 5"}},{"before":"92950c85860adb2e1ce71bd8b53e4f2c0ac63f7c","after":"796bf54b4b482cd223e922c992ebd3eb5b5a50f5","ref":"refs/heads/main","pushedAt":"2023-06-20T20:41:13.089Z","pushType":"push","commitsCount":1,"pusher":{"login":"hslyman","name":"Hannah Lyman","path":"/hslyman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2908522?s=80&v=4"},"commit":{"message":"add barcode inflection plot for all barcodes. no changes to Rmd","shortMessageHtmlLink":"add barcode inflection plot for all barcodes. no changes to Rmd"}},{"before":"32318b054b61a3d55916167164b41a6bd779765d","after":"92950c85860adb2e1ce71bd8b53e4f2c0ac63f7c","ref":"refs/heads/main","pushedAt":"2023-06-20T20:27:31.525Z","pushType":"push","commitsCount":1,"pusher":{"login":"hslyman","name":"Hannah Lyman","path":"/hslyman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2908522?s=80&v=4"},"commit":{"message":"nav bar fix","shortMessageHtmlLink":"nav bar fix"}},{"before":"3aec3acacba5c43af7457aa38af6e048b4caf648","after":"32318b054b61a3d55916167164b41a6bd779765d","ref":"refs/heads/main","pushedAt":"2023-06-20T20:22:45.013Z","pushType":"push","commitsCount":1,"pusher":{"login":"hslyman","name":"Hannah Lyman","path":"/hslyman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2908522?s=80&v=4"},"commit":{"message":"added completed JackStraw plot","shortMessageHtmlLink":"added completed JackStraw plot"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADX3frhAA","startCursor":null,"endCursor":null}},"title":"Activity · ucdavis-bioinformatics-training/2023-June-Single-Cell-RNA-Seq-Analysis"}