QUON-titative biology lab public repository
Binary Factor Analysis (BFA) and Binary PCA - These are tools for performing dimensionality reduction in large scRNA-seq datasets, as described in: Li, R., Quon, G. (2018) Gene detection models outperform gene expression for large-scale scRNA-seq analysis. bioRxiv doi: https://doi.org/10.1101/454629.
scAlign - A deep learning method for aligning and integrating scRNA-seq data collected across multiple conditions into a common, low-dimensional cell state space for downstream analysis, as described in: Johansen, N, Quon, G. (2018) scAlign: a tool for alignment, integration and rare cell identification from scRNA-seq data. bioRxiv doi: https://doi.org/10.1101/504944.