React widget for analyzing expression of tissue samples within a pathway or set of genes.
npm run build
- add a view in Xena to new Tab #1
- put gene selection below pathway selection (and then only show the tissue view for genes) #2
- side-by-side comparison of different analysis #4
- provide statistics for comparisons
- add cell-lines
- add expression data
- integration with Viper functional analysis
- add outlier pathways
- allow multiple selection of genes / pathways with statistics (gene enrichment)
- provide combined statistics matches
- (allow visible selection of fields)
- put a control / display canvas on top of another one?
- allow selection of multiple cohorts (displayed vertically)
- allow selection of different criteria for scoring
- add different (drill-down) filters for scores, etc.
- allow different ways to shade, including z-score, only percentage, etc. etc.
- allow creation of custom pathways sets by selecting available genes (with lookup)
- allow hiding pathways
- show camplot
- show annotations for hovered / selected (are these the functional annotations?)
- integrate as new Xena page
Important biological questions
- what genes are involved / dominant in these pathways for 'X' affects
- what is the combined affect of these genes on various pathways for this set of selected genes