@ucsd-ccbb

UC San Diego Center for Computational Biology & Bioinformatics

  • visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

    Jupyter Notebook 49 16 MIT Updated Dec 19, 2018
  • VAPr: A Python package for NoSQL variant data storage, annotation and prioritization

    Python 13 2 MIT Updated Dec 11, 2018
  • toolbox of network biology methods

    Jupyter Notebook 1 MIT Updated Nov 9, 2018
  • Web application to collect metadata specifications from an experimenter and produce metadata input files with appropriate constraints

    Python 3 3 1 issue needs help Updated Nov 1, 2018
  • Gene Set Information Analysis

    R 4 1 Updated Aug 28, 2018
  • Python 3 1 MIT Updated Aug 1, 2018
  • Jupyter Notebook MIT Updated Apr 26, 2018
  • This repository contains code for the dual-CRISPR screen analysis pipeline developed to analyze results from the dual-CRISPR screening system set up by the labs of Dr. Prashant Mali and Dr. Trey Ideker. The software is developed by Amanda Birmingham and Roman Sasik of the Center for Computational Biology and Bioinformatics at the University of C…

    Python 2 MIT Updated Oct 3, 2017
  • Canonical pathway visualization and analysis

    Jupyter Notebook 3 2 MIT Updated Jun 9, 2017
  • Python utilities for general use at CCBB

    HTML MIT Updated Apr 25, 2017
  • A collection of Jupyter notebooks authored by the UCSD Center for Computational Biology & Bioinformatics (http://compbio.ucsd.edu). These include methods on utilizing cloud computing resources and analysis of data from next-generation sequencing, systems biology, and microbiome.

    Jupyter Notebook 40 17 MIT Updated Nov 15, 2016
  • HTML MIT Updated Sep 23, 2016