UC San Diego Center for Computational Biology & Bioinformatics

  • toolbox of network biology methods

    Jupyter Notebook 1 MIT Updated Aug 8, 2018
  • VAPr: A Python package for NoSQL variant data storage, annotation and prioritization

    Python 10 2 MIT Updated Aug 8, 2018
  • Python 3 1 MIT Updated Aug 2, 2018
  • Web application to collect metadata specifications from an experimenter and produce metadata input files with appropriate constraints

    Python 3 2 1 issue needs help Updated Jul 14, 2018
  • visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

    Jupyter Notebook 40 11 MIT Updated Jun 18, 2018
  • Jupyter Notebook MIT Updated Apr 27, 2018
  • Gene Set Information Analysis

    R 1 Updated Mar 21, 2018
  • This repository contains code for the dual-CRISPR screen analysis pipeline developed to analyze results from the dual-CRISPR screening system set up by the labs of Dr. Prashant Mali and Dr. Trey Ideker. The software is developed by Amanda Birmingham and Roman Sasik of the Center for Computational Biology and Bioinformatics at the University of C…

    Python 2 MIT Updated Oct 3, 2017
  • Canonical pathway visualization and analysis

    Jupyter Notebook 3 1 MIT Updated Jun 10, 2017
  • Python utilities for general use at CCBB

    HTML MIT Updated Apr 26, 2017
  • A collection of Jupyter notebooks authored by the UCSD Center for Computational Biology & Bioinformatics (http://compbio.ucsd.edu). These include methods on utilizing cloud computing resources and analysis of data from next-generation sequencing, systems biology, and microbiome.

    Jupyter Notebook 34 11 MIT Updated Nov 15, 2016
  • HTML MIT Updated Sep 23, 2016