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UGENE is free open-source cross-platform bioinformatics software
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README.md

UGENE

Building UGENE

Prerequisites

Make sure the Qt (>= 5.3.2) development libraries are installed:

  • Ubuntu >=14.04: sudo apt-get install qt5-default qttools5-dev-tools qtscript5-dev libqt5svg5-dev libqt5webkit5-dev
  • Ubuntu 12.04:
    • Download and install Qt 5.5.1: www.qt.io/download-open-source/
    • Set the system variable: export PATH=$PATH:~/Qt5.5.1/5.5/gcc_64/bin
    • sudo apt-get install g++ libgl1-mesa-dev libglu1-mesa-dev
  • Fedora: sudo yum install qt5-qtscript-devel qt5-qtbase-devel qt5-qtsvg-devel qt5-linguist qt5-qtwebkit-devel gcc-c++ redhat-rpm-config mesa-libGLU-devel
  • Arch Linux: sudo pacman -S qt
  • Mac OS X: download from Qt official site (http://www.qt.io/download/)
  • Windows: download from Qt official site (http://www.qt.io/download/)

For Windows users:

To build with devenv (Visual Studio)

  1. qmake -r -tp vc ugene.pro 1.1. add "CONFIG+=x64" to qmake command for 64-bit build
  2. open ugene.sln from Visual Studio or run devenv.exe ugene.sln /Build from MSVC command line

To build with nmake.exe:

  1. qmake -r ugene.pro 1.1. add "CONFIG+=x64" to qmake command for 64-bit build
  2. run nmake, nmake debug or nmake release to build UGENE

Also you need to add "libeay.dll" and "ssleay.dll" from OpenSSL ToolKit to "../ugene/src/_debug" folder

For *nix users:

  1. installation paths may be set up in ugene_globals.pri
  2. qmake -r (Fedora: qmake-qt5 -r)
  3. make -j 4
  4. sudo make install
  5. ugene -ui

Note: usually, make builds a release version of UGENE. However, on certain platforms default target is debug. To enforce release build use make release or make all.

Some more information you can see in installer/_common_data/README file.

Build with CUDA

  1. Download and install required software from http://www.nvidia.com/object/cuda_get.html for your OS

  2. Make sure that some system variable are set:

    CUDA_LIB_PATH=/path_where_cuda_installed/lib
    CUDA_INC_PATH=/path_where_cuda_installed/include
    PATH=$PATH:/path_where_cuda_installed/bin
    

    for *nix: LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CUDA_LIB_PATH

  3. cd ./src and open ugene_globals.pri, find and set variable UGENE_CUDA_DETECTED = 1

Build with OpenCL

  1. Download and install video driver wich supports OpenCL
  2. Download OpenCL headers from http://www.khronos.org/registry/cl/ or find them in video vendor SDK directory.
  3. make sure that you have system variable is set correctly: OPENCL_INC_PATH=/path_where_open_cl_installed
  4. cd ./src and open ugene_globals.pri, find and set variable UGENE_OPENCL_DETECTED = 1

Notes: UGENE_CELL flag in ugene_globals should be uncommented when building on Cell BE platform

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