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UGENE

Download UGENE: https://ugeneunipro.github.io/ugene/

Building UGENE

Prerequisites

Qt (>= 5.12.0 and <= 5.15.x) with the following components installed with Qt installer:

  • Desktop
  • QtScript

For Windows users:

To build with devenv (Visual Studio):

  1. qmake -r -tp vc ugene.pro
  2. open ugene.sln from Visual Studio and build or run devenv.exe ugene.sln /Build from MSVC command line

To build with nmake:

  1. qmake -r ugene.pro
  2. run nmake, nmake debug or nmake release to build UGENE

For *nix users:

To build and install UGENE on *nix:

  1. qmake -r PREFIX=/opt/ugene-${VERSION}.
  2. make -j 4
  3. sudo make install
  4. sudo ln -s /opt/ugene-${VERSION}/ugene /usr/bin
  5. ugene -ui

Note: you do not need 'sudo' if you select your own folder for the installation.

Build with CUDA

  1. Download and install required software from http://www.nvidia.com/object/cuda_get.html for your OS

  2. Make sure that some system variable are set:

    CUDA_LIB_PATH=/path_where_cuda_installed/lib
    CUDA_INC_PATH=/path_where_cuda_installed/include
    PATH=$PATH:/path_where_cuda_installed/bin
    

    for *nix: LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CUDA_LIB_PATH

  3. cd ./src and open ugene_globals.pri, find and set variable UGENE_CUDA_DETECTED = 1

Build with OpenCL

  1. Download and install video driver with OpenCL support.
  2. Download OpenCL headers from http://www.khronos.org/registry/cl/ or find them in video vendor SDK directory.
  3. Build & run UGENE as usual. During startup UGENE will try to dynamically load 'OpenCL' library (See OpenCLHelper.cpp).