genome browsing with dalliance
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R
data
examples
inst
rsconnect/documents/gbdr_sketch.Rmd/rpubs.com/rpubs
tests
vignettes
.Rbuildignore
.bowerrc
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DESCRIPTION
NAMESPACE
README.md
dallianceR.Rproj
gbdr_sketch.Rmd
gbdr_sketch.html
serve_http.py
worker-all.js

README.md

dallianceR

dallianceR is an interactive genome browser for R. It's based on JavaScript library dalliance and implemented with htmlwidgets.

You can install dallianceR with devtools:


devtools::install_github("uhlitz/dallianceR")

Have a look at our vignette to get started.

How to use this?

# clone repo
git clone this-repo.git ~/dalliancer

# build the package
cd ~/dalliancer
R CMD INSTALL --with-keep.source -l ~/R .

# start the HTTP server
mkdir ~/tmp/dalliance
cd ~/tmp/dalliance
cp ~/dalliancer/worker-all.js .
python ~/dalliancer/serve_http.py

# in R
library("dallianceR");
dalliance(genome="GRCh38",
          annotation="GENCODEv21",
          data=dummy,
          display=TRUE,
          path="~/tmp/dalliance")