PCGRIP: Personal Cancer Gene Reporter StackStorm Integration Pack
WARNING: Work in Progress, incubation stage
This pack is meant to be used to control cancer reporting software such as the PCGR.
It depends on the StackStorm-ansible pack for instantiating and building a fully functional PCGR instance. The deployment details and dependencies to tilt up such an instance are coded as ansible roles (and playbooks) in pcgr-deploy.
In order to submit data samples to the running instance, a barebones Flask webservice, pcgr-webservice, is used to send and execute the processing on uploaded VCF files.
This pack is following the StackStorm-ansible blueprint throughly described in the Ansible-ChatOps StackStorm blogpost.