Personal Cancer Gene Reporter StackStorm Pack
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README.md

PCGRIP: Personal Cancer Gene Reporter StackStorm Integration Pack

WARNING: Work in Progress, incubation stage

This pack is meant to be used to control cancer reporting software such as the PCGR.

It depends on the StackStorm-ansible pack for instantiating and building a fully functional PCGR instance. The deployment details and dependencies to tilt up such an instance are coded as ansible roles (and playbooks) in pcgr-deploy.

In order to submit data samples to the running instance, a barebones Flask webservice, pcgr-webservice, is used to send and execute the processing on uploaded VCF files.

This pack is following the StackStorm-ansible blueprint throughly described in the Ansible-ChatOps StackStorm blogpost.