From eb6dd08beb1e59e28ab911a1950ddb83fa73ad1e Mon Sep 17 00:00:00 2001
From: Bart Mesuere <Bart.Mesuere@UGent.be>
Date: Fri, 12 Jun 2015 15:54:05 +0200
Subject: [PATCH] bump version

---
 README.md       |  6 ++---
 VERSION         |  2 +-
 unipept.gemspec | 61 ++++++++++++++++++++++++++++++++++---------------
 3 files changed, 47 insertions(+), 22 deletions(-)

diff --git a/README.md b/README.md
index 656a33b3..9e59ed17 100644
--- a/README.md
+++ b/README.md
@@ -23,8 +23,8 @@ The Unipept CLI is available as a *gem*. This means it can easily be installed w
 
 ```bash
 $ gem install unipept
-Successfully installed unipept-0.7.1
-Parsing documentation for unipept-0.7.1
+Successfully installed unipept-0.8.0
+Parsing documentation for unipept-0.8.0
 Done installing documentation for unipept after 0 seconds
 1 gem installed
 ```
@@ -33,7 +33,7 @@ After successful installation, the unipept command should be available:
 
 ```bash
 $ unipept -v
-0.7.1
+0.8.0
 ```
 
 The help can be accessed by running `unipept -h`.
diff --git a/VERSION b/VERSION
index 39e898a4..a3df0a69 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-0.7.1
+0.8.0
diff --git a/unipept.gemspec b/unipept.gemspec
index 1294a6f0..ae74815c 100644
--- a/unipept.gemspec
+++ b/unipept.gemspec
@@ -2,16 +2,15 @@
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: unipept 0.7.1 ruby lib
+# stub: unipept 0.8.0 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "unipept"
-  s.version = "0.7.1"
+  s.version = "0.8.0"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
-  s.require_paths = ["lib"]
   s.authors = ["Toon Willems", "Bart Mesuere", "Tom Naessens"]
-  s.date = "2015-05-20"
+  s.date = "2015-06-12"
   s.description = "  Command line interface to the Unipept (http://unipept.ugent.be) web services\n  (pept2lca, taxa2lca, pept2taxa and taxonomy) and some utility commands for\n  handling proteins using the command line.\n"
   s.email = "unipept@ugent.be"
   s.executables = ["unipept", "prot2pept", "peptfilter", "uniprot"]
@@ -21,6 +20,8 @@ Gem::Specification.new do |s|
   ]
   s.files = [
     ".document",
+    ".rubocop.yml",
+    ".travis.yml",
     "Gemfile",
     "Gemfile.lock",
     "LICENSE.txt",
@@ -31,26 +32,47 @@ Gem::Specification.new do |s|
     "bin/prot2pept",
     "bin/unipept",
     "bin/uniprot",
-    "lib/unipept.rb",
-    "lib/unipept/batch_order.rb",
-    "lib/unipept/commands.rb",
-    "lib/unipept/commands/api_runner.rb",
-    "lib/unipept/commands/pept2lca.rb",
-    "lib/unipept/commands/pept2prot.rb",
-    "lib/unipept/commands/pept2taxa.rb",
-    "lib/unipept/commands/taxa2lca.rb",
-    "lib/unipept/commands/taxonomy.rb",
-    "lib/unipept/configuration.rb",
-    "lib/unipept/formatters.rb",
-    "lib/unipept/version.rb",
+    "lib/batch_iterator.rb",
+    "lib/batch_order.rb",
+    "lib/commands.rb",
+    "lib/commands/peptfilter.rb",
+    "lib/commands/prot2pept.rb",
+    "lib/commands/unipept.rb",
+    "lib/commands/unipept/api_runner.rb",
+    "lib/commands/unipept/config.rb",
+    "lib/commands/unipept/pept2lca.rb",
+    "lib/commands/unipept/pept2prot.rb",
+    "lib/commands/unipept/pept2taxa.rb",
+    "lib/commands/unipept/taxa2lca.rb",
+    "lib/commands/unipept/taxonomy.rb",
+    "lib/commands/uniprot.rb",
+    "lib/configuration.rb",
+    "lib/formatters.rb",
+    "lib/version.rb",
+    "test/commands/test_peptfilter.rb",
+    "test/commands/test_prot2pept.rb",
+    "test/commands/test_unipept.rb",
+    "test/commands/test_uniprot.rb",
+    "test/commands/unipept/test_api_runner.rb",
+    "test/commands/unipept/test_config.rb",
+    "test/commands/unipept/test_pept2lca.rb",
+    "test/commands/unipept/test_pept2prot.rb",
+    "test/commands/unipept/test_pept2taxa.rb",
+    "test/commands/unipept/test_taxa2lca.rb",
+    "test/commands/unipept/test_taxonomy.rb",
     "test/helper.rb",
-    "test/test_unipept.rb",
+    "test/test_bach_order.rb",
+    "test/test_base.rb",
+    "test/test_batch_iterator.rb",
+    "test/test_configuration.rb",
+    "test/test_formatters.rb",
     "unipept.gemspec"
   ]
   s.homepage = "https://github.com/unipept/unipept-cli/"
   s.licenses = ["MIT"]
+  s.require_paths = ["lib"]
   s.required_ruby_version = Gem::Requirement.new(">= 1.9.3")
-  s.rubygems_version = "2.2.2"
+  s.rubygems_version = "2.1.11"
   s.summary = "Command line interface to Unipept web services."
 
   if s.respond_to? :specification_version then
@@ -63,6 +85,7 @@ Gem::Specification.new do |s|
       s.add_development_dependency(%q<minitest>, [">= 0"])
       s.add_development_dependency(%q<rubocop>, [">= 0"])
       s.add_development_dependency(%q<jeweler>, [">= 0"])
+      s.add_development_dependency(%q<coveralls>, [">= 0"])
     else
       s.add_dependency(%q<cri>, ["~> 2.7"])
       s.add_dependency(%q<typhoeus>, ["~> 0.6"])
@@ -70,6 +93,7 @@ Gem::Specification.new do |s|
       s.add_dependency(%q<minitest>, [">= 0"])
       s.add_dependency(%q<rubocop>, [">= 0"])
       s.add_dependency(%q<jeweler>, [">= 0"])
+      s.add_dependency(%q<coveralls>, [">= 0"])
     end
   else
     s.add_dependency(%q<cri>, ["~> 2.7"])
@@ -78,6 +102,7 @@ Gem::Specification.new do |s|
     s.add_dependency(%q<minitest>, [">= 0"])
     s.add_dependency(%q<rubocop>, [">= 0"])
     s.add_dependency(%q<jeweler>, [">= 0"])
+    s.add_dependency(%q<coveralls>, [">= 0"])
   end
 end