Started by user r-hub Jenkins admin Building remotely on linux-builder-1.internal.cloudapp.net-8aa666a5 (slave swarm linux) in workspace /home/ubuntu/workspace/upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41 [upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41] $ /bin/sh -xe /tmp/hudson7299343525330818042.sh +R-HUB-R-HUB-R-HUBdate -u +%Y-%m-%dT%H:%M:%SZ +R-HUB-R-HUB-R-HUBwget https://builder.r-hub.io/build/in-progress/upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/2020-06-16T10:38:08Z --2020-06-16 10:38:08-- https://builder.r-hub.io/build/in-progress/upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/2020-06-16T10:38:08Z Resolving builder.r-hub.io (builder.r-hub.io)... 54.241.228.251 Connecting to builder.r-hub.io (builder.r-hub.io)|54.241.228.251|:443... connected. HTTP request sent, awaiting response... 200 OK Syntax error in Set-Cookie: r-hub frontend=s%3Ae80b53e3-736a-43b3-8558-54b36a34ff16.BJoxIeAVPVTVDiaCfLgiSSxgQ%2FTuN8p2EEIBBqYNho0; Path=/; Expires=Tue, 16 Jun 2020 20:38:08 GMT at position 0. Length: unspecified [application/json] Saving to: '2020-06-16T10:38:08Z' 0K 1.10M=0s 2020-06-16 10:38:08 (1.10 MB/s) - '2020-06-16T10:38:08Z' saved [15] +R-HUB-R-HUB-R-HUBdocker run --user docker --rm rhub/fedora-clang-devel bash -c echo $RHUB_PLATFORM +R-HUB-R-HUB-R-HUBexport RHUB_PLATFORM=linux-x86_64-fedora-clang +R-HUB-R-HUB-R-HUBecho >>>>>==================== Downloading and unpacking package file >>>>>==================== Downloading and unpacking package file +R-HUB-R-HUB-R-HUBwget -O upsetjs_1.1.0.tar.gz https://builder.r-hub.io/file/027ee1b7986c456e97c4086d71c0c3ca --2020-06-16 10:38:09-- https://builder.r-hub.io/file/027ee1b7986c456e97c4086d71c0c3ca Resolving builder.r-hub.io (builder.r-hub.io)... 54.241.228.251 Connecting to builder.r-hub.io (builder.r-hub.io)|54.241.228.251|:443... connected. HTTP request sent, awaiting response... 200 OK Syntax error in Set-Cookie: r-hub frontend=s%3A37a38bc9-ffef-4a59-9f49-e2a388d93523.gRy7JMadG2ClgN6faCjmtonhZjE58t3oZgcMBiN1gWo; Path=/; Expires=Tue, 16 Jun 2020 20:38:09 GMT at position 0. Length: 225356 (220K) [application/octet-stream] Saving to: 'upsetjs_1.1.0.tar.gz' 0K .......... .......... .......... .......... .......... 22% 11.3M 0s 50K .......... .......... .......... .......... .......... 45% 12.3M 0s 100K .......... .......... .......... .......... .......... 68% 11.1M 0s 150K .......... .......... .......... .......... .......... 90% 12.9M 0s 200K .......... .......... 100% 57.1M=0.02s 2020-06-16 10:38:09 (12.8 MB/s) - 'upsetjs_1.1.0.tar.gz' saved [225356/225356] +R-HUB-R-HUB-R-HUBgrep ^[^/]*/DESCRIPTION$ +R-HUB-R-HUB-R-HUBtar tzf upsetjs_1.1.0.tar.gz +R-HUB-R-HUB-R-HUBDESC=upsetjs/DESCRIPTION +R-HUB-R-HUB-R-HUBtar xzf upsetjs_1.1.0.tar.gz upsetjs/DESCRIPTION +R-HUB-R-HUB-R-HUBecho >>>>>==================== Querying system requirements >>>>>==================== Querying system requirements +R-HUB-R-HUB-R-HUBRscript -e library(sysreqs); cat(sysreq_commands("upsetjs/DESCRIPTION")) Warning message: In utils::download.file(url, path, method = download_method(), quiet = quiet, : downloaded length 4207 != reported length 0 +R-HUB-R-HUB-R-HUBsysreqs=dnf install -y pandoc pandoc-citeproc +R-HUB-R-HUB-R-HUBrm upsetjs/DESCRIPTION +R-HUB-R-HUB-R-HUBecho >>>>>==================== Installing system requirements >>>>>==================== Installing system requirements +R-HUB-R-HUB-R-HUB[ ! -z dnf install -y pandoc pandoc-citeproc ] +R-HUB-R-HUB-R-HUBecho dnf install -y pandoc pandoc-citeproc +R-HUB-R-HUB-R-HUBpwd +R-HUB-R-HUB-R-HUBdocker run -d --user root --name upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-1 -v /home/ubuntu/workspace/upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/sysreqs.sh:/root/sysreqs.sh rhub/fedora-clang-devel bash /root/sysreqs.sh e9eade9707c3e82c94bcab2fcf8a064e3073db5f94d37867f8234de61117a255 +R-HUB-R-HUB-R-HUBdocker attach upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-1 Fedora Modular 31 - x86_64 86 kB/s | 17 kB 00:00 Fedora Modular 31 - x86_64 - Updates 37 kB/s | 13 kB 00:00 Fedora Modular 31 - x86_64 - Updates 539 kB/s | 420 kB 00:00 Fedora 31 - x86_64 - Updates 37 kB/s | 12 kB 00:00 Fedora 31 - x86_64 - Updates 1.4 MB/s | 3.4 MB 00:02 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: pandoc x86_64 2.5-1.fc31 fedora 17 M pandoc-citeproc x86_64 0.15.0.1-1.fc31 fedora 14 M Installing dependencies: pandoc-citeproc-common noarch 0.15.0.1-1.fc31 fedora 79 k pandoc-common noarch 2.5-1.fc31 fedora 331 k Transaction Summary ================================================================================ Install 4 Packages Total download size: 31 M Installed size: 220 M Downloading Packages: (1/4): pandoc-citeproc-common-0.15.0.1-1.fc31.n 234 kB/s | 79 kB 00:00 (2/4): pandoc-common-2.5-1.fc31.noarch.rpm 4.5 MB/s | 331 kB 00:00 (3/4): pandoc-citeproc-0.15.0.1-1.fc31.x86_64.r 15 MB/s | 14 MB 00:00 (4/4): pandoc-2.5-1.fc31.x86_64.rpm 16 MB/s | 17 MB 00:01 -------------------------------------------------------------------------------- Total 23 MB/s | 31 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : pandoc-common-2.5-1.fc31.noarch 1/4 Installing : pandoc-citeproc-common-0.15.0.1-1.fc31.noarch 2/4 Installing : pandoc-citeproc-0.15.0.1-1.fc31.x86_64 3/4 Installing : pandoc-2.5-1.fc31.x86_64 4/4 Running scriptlet: pandoc-2.5-1.fc31.x86_64 4/4 Verifying : pandoc-2.5-1.fc31.x86_64 1/4 Verifying : pandoc-citeproc-0.15.0.1-1.fc31.x86_64 2/4 Verifying : pandoc-citeproc-common-0.15.0.1-1.fc31.noarch 3/4 Verifying : pandoc-common-2.5-1.fc31.noarch 4/4 Installed: pandoc-2.5-1.fc31.x86_64 pandoc-citeproc-0.15.0.1-1.fc31.x86_64 pandoc-citeproc-common-0.15.0.1-1.fc31.noarch pandoc-common-2.5-1.fc31.noarch Complete! +R-HUB-R-HUB-R-HUBdocker commit upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-1 +R-HUB-R-HUB-R-HUBnewimage=sha256:1b5eb6e3e1c803dcf87d9e58ba3e2c3f2180c8b3805879309d82c1f807cd35e2 +R-HUB-R-HUB-R-HUBtempfile +R-HUB-R-HUB-R-HUBenv=/tmp/fileUEVLUn +R-HUB-R-HUB-R-HUBecho url=https://builder.r-hub.io/file/027ee1b7986c456e97c4086d71c0c3ca +R-HUB-R-HUB-R-HUBecho package=upsetjs_1.1.0.tar.gz +R-HUB-R-HUB-R-HUBecho checkArgs=--as-cran +R-HUB-R-HUB-R-HUBecho build=false +R-HUB-R-HUB-R-HUBecho R_REMOTES_STANDALONE=true +R-HUB-R-HUB-R-HUBecho R_REMOTES_NO_ERRORS_FROM_WARNINGS=true +R-HUB-R-HUB-R-HUBecho TZ=Europe/London +R-HUB-R-HUB-R-HUBecho _R_CHECK_FORCE_SUGGESTS_=true _R_CHECK_CRAN_INCOMING_USE_ASPELL_=true +R-HUB-R-HUB-R-HUBecho >>>>>==================== Starting Docker container >>>>>==================== Starting Docker container +R-HUB-R-HUB-R-HUBpwd +R-HUB-R-HUB-R-HUBdocker run -i --user docker --env-file /tmp/fileUEVLUn -v /home/ubuntu/workspace/upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs_1.1.0.tar.gz:/tmp/upsetjs_1.1.0.tar.gz --name upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-2 sha256:1b5eb6e3e1c803dcf87d9e58ba3e2c3f2180c8b3805879309d82c1f807cd35e2 /bin/bash -l R Under development (unstable) (2020-06-12 r78687) -- "Unsuffered Consequences" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.packages('BiocManager') Installing package into ‘/home/docker/R’ (as ‘lib’ is unspecified) trying URL 'https://cloud.r-project.org/src/contrib/BiocManager_1.30.10.tar.gz' Content type 'application/x-gzip' length 40205 bytes (39 KB) ================================================== downloaded 39 KB * installing *source* package ‘BiocManager’ ... ** package ‘BiocManager’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocManager) The downloaded source packages are in ‘/tmp/RtmpBhat0S/downloaded_packages’ > > >>>>>==================== Querying package dependencies % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 162k 100 162k 0 0 1286k 0 --:--:-- --:--:-- --:--:-- 1286k R Under development (unstable) (2020-06-12 r78687) -- "Unsuffered Consequences" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > source("install-github.R")$value("r-lib/remotes@r-hub") Downloading GitHub repo r-lib/remotes@r-hub Running `R CMD build`... * checking for file ‘/tmp/Rtmp5Aw10o/remotes5f62652db7/r-lib-remotes-6e26f33/DESCRIPTION’ ... OK * preparing ‘remotes’: * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘remotes_2.1.1.9000.tar.gz’ Installing package into ‘/home/docker/R’ (as ‘lib’ is unspecified) * installing *source* package ‘remotes’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (remotes) > > >>>>>==================== Installing package dependencies /opt/R-devel/bin:/home/docker/.local/bin:/home/docker/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin /usr/bin/clang clang version 9.0.1 (Fedora 9.0.1-2.fc31) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/bin /usr/bin/clang++ -std=gnu++11 clang version 9.0.1 (Fedora 9.0.1-2.fc31) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/bin Pandoc: /usr/bin/pandoc -rwxr-xr-x 1 root root 123147792 Aug 6 2019 /usr/bin/pandoc -rwxr-xr-x 1 root root 105926728 Aug 8 2019 /usr/bin/pandoc-citeproc R Under development (unstable) (2020-06-12 r78687) -- "Unsuffered Consequences" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > remotes::install_local("upsetjs_1.1.0.tar.gz", dependencies = TRUE, INSTALL_opts = "--build") digest (NA -> 0.6.25 ) [CRAN] Rcpp (NA -> 1.0.4.6) [CRAN] rlang (NA -> 0.4.6 ) [CRAN] xfun (NA -> 0.14 ) [CRAN] mime (NA -> 0.9 ) [CRAN] glue (NA -> 1.4.1 ) [CRAN] magrittr (NA -> 1.5 ) [CRAN] stringi (NA -> 1.4.6 ) [CRAN] evaluate (NA -> 0.14 ) [CRAN] highr (NA -> 0.8 ) [CRAN] markdown (NA -> 1.1 ) [CRAN] stringr (NA -> 1.4.0 ) [CRAN] yaml (NA -> 2.2.1 ) [CRAN] assertthat (NA -> 0.2.1 ) [CRAN] crayon (NA -> 1.3.4 ) [CRAN] fansi (NA -> 0.4.1 ) [CRAN] cli (NA -> 2.0.2 ) [CRAN] utf8 (NA -> 1.1.4 ) [CRAN] vctrs (NA -> 0.3.1 ) [CRAN] ellipsis (NA -> 0.3.1 ) [CRAN] htmltools (NA -> 0.4.0 ) [CRAN] jsonlite (NA -> 1.6.1 ) [CRAN] lazyeval (NA -> 0.2.2 ) [CRAN] R6 (NA -> 2.4.1 ) [CRAN] knitr (NA -> 1.28 ) [CRAN] base64enc (NA -> 0.1-3 ) [CRAN] tinytex (NA -> 0.23 ) [CRAN] lifecycle (NA -> 0.2.0 ) [CRAN] pillar (NA -> 1.4.4 ) [CRAN] pkgconfig (NA -> 2.0.3 ) [CRAN] htmlwidgets (NA -> 1.5.1 ) [CRAN] crosstalk (NA -> 1.1.0.1) [CRAN] rmarkdown (NA -> 2.2 ) [CRAN] formatR (NA -> 1.7 ) [CRAN] tibble (NA -> 3.0.1 ) [CRAN] Installing 35 packages: digest, Rcpp, rlang, xfun, mime, glue, magrittr, stringi, evaluate, highr, markdown, stringr, yaml, assertthat, crayon, fansi, cli, utf8, vctrs, ellipsis, htmltools, jsonlite, lazyeval, R6, knitr, base64enc, tinytex, lifecycle, pillar, pkgconfig, htmlwidgets, crosstalk, rmarkdown, formatR, tibble Installing packages into ‘/home/docker/R’ (as ‘lib’ is unspecified) trying URL 'https://cloud.r-project.org/src/contrib/digest_0.6.25.tar.gz' Content type 'application/x-gzip' length 145642 bytes (142 KB) ================================================== downloaded 142 KB trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_1.0.4.6.tar.gz' Content type 'application/x-gzip' length 2751467 bytes (2.6 MB) ================================================== downloaded 2.6 MB trying URL 'https://cloud.r-project.org/src/contrib/rlang_0.4.6.tar.gz' Content type 'application/x-gzip' length 835198 bytes (815 KB) ================================================== downloaded 815 KB trying URL 'https://cloud.r-project.org/src/contrib/xfun_0.14.tar.gz' Content type 'application/x-gzip' length 69436 bytes (67 KB) ================================================== downloaded 67 KB trying URL 'https://cloud.r-project.org/src/contrib/mime_0.9.tar.gz' Content type 'application/x-gzip' length 12843 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://cloud.r-project.org/src/contrib/glue_1.4.1.tar.gz' Content type 'application/x-gzip' length 98581 bytes (96 KB) ================================================== downloaded 96 KB trying URL 'https://cloud.r-project.org/src/contrib/magrittr_1.5.tar.gz' Content type 'application/x-gzip' length 200504 bytes (195 KB) ================================================== downloaded 195 KB trying URL 'https://cloud.r-project.org/src/contrib/stringi_1.4.6.tar.gz' Content type 'application/x-gzip' length 7284354 bytes (6.9 MB) ================================================== downloaded 6.9 MB trying URL 'https://cloud.r-project.org/src/contrib/evaluate_0.14.tar.gz' Content type 'application/x-gzip' length 24206 bytes (23 KB) ================================================== downloaded 23 KB trying URL 'https://cloud.r-project.org/src/contrib/highr_0.8.tar.gz' Content type 'application/x-gzip' length 17445 bytes (17 KB) ================================================== downloaded 17 KB trying URL 'https://cloud.r-project.org/src/contrib/markdown_1.1.tar.gz' Content type 'application/x-gzip' length 81050 bytes (79 KB) ================================================== downloaded 79 KB trying URL 'https://cloud.r-project.org/src/contrib/stringr_1.4.0.tar.gz' Content type 'application/x-gzip' length 135777 bytes (132 KB) ================================================== downloaded 132 KB trying URL 'https://cloud.r-project.org/src/contrib/yaml_2.2.1.tar.gz' Content type 'application/x-gzip' length 92670 bytes (90 KB) ================================================== downloaded 90 KB trying URL 'https://cloud.r-project.org/src/contrib/assertthat_0.2.1.tar.gz' Content type 'application/x-gzip' length 12742 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://cloud.r-project.org/src/contrib/crayon_1.3.4.tar.gz' Content type 'application/x-gzip' length 658694 bytes (643 KB) ================================================== downloaded 643 KB trying URL 'https://cloud.r-project.org/src/contrib/fansi_0.4.1.tar.gz' Content type 'application/x-gzip' length 270906 bytes (264 KB) ================================================== downloaded 264 KB trying URL 'https://cloud.r-project.org/src/contrib/cli_2.0.2.tar.gz' Content type 'application/x-gzip' length 116357 bytes (113 KB) ================================================== downloaded 113 KB trying URL 'https://cloud.r-project.org/src/contrib/utf8_1.1.4.tar.gz' Content type 'application/x-gzip' length 218882 bytes (213 KB) ================================================== downloaded 213 KB trying URL 'https://cloud.r-project.org/src/contrib/vctrs_0.3.1.tar.gz' Content type 'application/x-gzip' length 946964 bytes (924 KB) ================================================== downloaded 924 KB trying URL 'https://cloud.r-project.org/src/contrib/ellipsis_0.3.1.tar.gz' Content type 'application/x-gzip' length 7582 bytes ================================================== downloaded 7582 bytes trying URL 'https://cloud.r-project.org/src/contrib/htmltools_0.4.0.tar.gz' Content type 'application/x-gzip' length 52542 bytes (51 KB) ================================================== downloaded 51 KB trying URL 'https://cloud.r-project.org/src/contrib/jsonlite_1.6.1.tar.gz' Content type 'application/x-gzip' length 1057910 bytes (1.0 MB) ================================================== downloaded 1.0 MB trying URL 'https://cloud.r-project.org/src/contrib/lazyeval_0.2.2.tar.gz' Content type 'application/x-gzip' length 83482 bytes (81 KB) ================================================== downloaded 81 KB trying URL 'https://cloud.r-project.org/src/contrib/R6_2.4.1.tar.gz' Content type 'application/x-gzip' length 35536 bytes (34 KB) ================================================== downloaded 34 KB trying URL 'https://cloud.r-project.org/src/contrib/knitr_1.28.tar.gz' Content type 'application/x-gzip' length 884866 bytes (864 KB) ================================================== downloaded 864 KB trying URL 'https://cloud.r-project.org/src/contrib/base64enc_0.1-3.tar.gz' Content type 'application/x-gzip' length 7833 bytes ================================================== downloaded 7833 bytes trying URL 'https://cloud.r-project.org/src/contrib/tinytex_0.23.tar.gz' Content type 'application/x-gzip' length 27142 bytes (26 KB) ================================================== downloaded 26 KB trying URL 'https://cloud.r-project.org/src/contrib/lifecycle_0.2.0.tar.gz' Content type 'application/x-gzip' length 164455 bytes (160 KB) ================================================== downloaded 160 KB trying URL 'https://cloud.r-project.org/src/contrib/pillar_1.4.4.tar.gz' Content type 'application/x-gzip' length 231021 bytes (225 KB) ================================================== downloaded 225 KB trying URL 'https://cloud.r-project.org/src/contrib/pkgconfig_2.0.3.tar.gz' Content type 'application/x-gzip' length 6080 bytes ================================================== downloaded 6080 bytes trying URL 'https://cloud.r-project.org/src/contrib/htmlwidgets_1.5.1.tar.gz' Content type 'application/x-gzip' length 867206 bytes (846 KB) ================================================== downloaded 846 KB trying URL 'https://cloud.r-project.org/src/contrib/crosstalk_1.1.0.1.tar.gz' Content type 'application/x-gzip' length 673125 bytes (657 KB) ================================================== downloaded 657 KB trying URL 'https://cloud.r-project.org/src/contrib/rmarkdown_2.2.tar.gz' Content type 'application/x-gzip' length 3192895 bytes (3.0 MB) ================================================== downloaded 3.0 MB trying URL 'https://cloud.r-project.org/src/contrib/formatR_1.7.tar.gz' Content type 'application/x-gzip' length 105954 bytes (103 KB) ================================================== downloaded 103 KB trying URL 'https://cloud.r-project.org/src/contrib/tibble_3.0.1.tar.gz' Content type 'application/x-gzip' length 399191 bytes (389 KB) ================================================== downloaded 389 KB * installing *source* package ‘digest’ ... ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o /usr/bin/clang++ -std=gnu++11 -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o digest.so SpookyV2.o aes.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘digest’ as ‘digest_0.6.25_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (digest) * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o /usr/bin/clang++ -std=gnu++11 -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘Rcpp’ as ‘Rcpp_1.0.4.6_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (Rcpp) * installing *source* package ‘rlang’ ... ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘rlang’ as ‘rlang_0.4.6_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (rlang) * installing *source* package ‘xfun’ ... ** package ‘xfun’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘xfun’ as ‘xfun_0.14_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (xfun) * installing *source* package ‘mime’ ... ** package ‘mime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o mime.so init.o rawmatch.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-mime/00new/mime/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘mime’ as ‘mime_0.9_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (mime) * installing *source* package ‘glue’ ... ** package ‘glue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o glue.so glue.o init.o trim.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘glue’ as ‘glue_1.4.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (glue) * installing *source* package ‘magrittr’ ... ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘magrittr’ as ‘magrittr_1.5_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (magrittr) * installing *source* package ‘stringi’ ... ** package ‘stringi’ successfully unpacked and MD5 sums checked ** using staged installation checking for R_HOME... /opt/R-devel/lib64/R checking for R... /opt/R-devel/lib64/R/bin/R checking for endianness... little checking for R >= 3.1.0 for C++11 use... yes checking for R < 3.4.0 for CXX1X flag use... no checking for cat... /usr/bin/cat checking for local ICUDT_DIR... icu61/data checking for gcc... /usr/bin/clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/clang accepts -g... yes checking for /usr/bin/clang option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/clang++ -std=gnu++11 accepts -g... yes checking whether the C++ compiler supports the long long type... yes checking whether the compiler implements namespaces... yes checking whether the compiler supports Standard Template Library... yes checking whether std::map is available... yes checking for pkg-config... /usr/bin/pkg-config checking with pkg-config for the system ICU4C... 63.2 checking for ICU4C >= 55... yes checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done checking whether we may build an ICU4C-based project... yes checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes checking for available ICU data library (ucnv, uloc, utrans)... yes checking for available ICU data library (ucol)... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/uconfig_local.h config.status: creating src/install.libs.R *** stringi configure summary: ICU_FOUND=1 STRINGI_CXXSTD=CXX_STD=CXX11 STRINGI_CFLAGS= -fpic STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H STRINGI_CXXFLAGS= -fpic STRINGI_LDFLAGS=-L/usr/lib64 STRINGI_LIBS=-licui18n -licuuc -licudata *** compiler settings used: CC=/usr/bin/clang LD=/usr/bin/clang++ -std=gnu++11 CFLAGS=-g -O2 -fpic CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG CXX=/usr/bin/clang++ -std=gnu++11 CXXFLAGS=-g -O2 -fpic LDFLAGS= LIBS= ** libs /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o /usr/bin/clang++ -std=gnu++11 -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib64 -licui18n -licuuc -licudata -L/opt/R-devel/lib64/R/lib -lR installing via 'install.libs.R' to /home/docker/R/00LOCK-stringi/00new/stringi ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘stringi’ as ‘stringi_1.4.6_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (stringi) * installing *source* package ‘evaluate’ ... ** package ‘evaluate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘evaluate’ as ‘evaluate_0.14_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (evaluate) * installing *source* package ‘highr’ ... ** package ‘highr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘highr’ as ‘highr_0.8_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (highr) * installing *source* package ‘yaml’ ... ** package ‘yaml’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o r_emit.c:573:57: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] result = emit_factor(emitter, event, s_obj, tag, implicit_tag); ^~~ r_emit.c:584:57: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] result = emit_string(emitter, event, s_obj, tag, implicit_tag); ^~~ r_emit.c:614:57: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] result = emit_char(emitter, event, s_chr, tag, implicit_tag, ^~~ 3 warnings generated. /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o r_parse.c:194:23: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] tag = process_tag(tag); ^~~ r_parse.c:491:23: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] tag = process_tag(tag); ^~~ r_parse.c:1017:23: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] tag = process_tag(tag); ^~~ 3 warnings generated. /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-yaml/00new/yaml/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘yaml’ as ‘yaml_2.2.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (yaml) * installing *source* package ‘assertthat’ ... ** package ‘assertthat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘assertthat’ as ‘assertthat_0.2.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (assertthat) * installing *source* package ‘crayon’ ... ** package ‘crayon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘crayon’ as ‘crayon_1.3.4_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (crayon) * installing *source* package ‘fansi’ ... ** package ‘fansi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-fansi/00new/fansi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘fansi’ as ‘fansi_0.4.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (fansi) * installing *source* package ‘utf8’ ... ** package ‘utf8’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-utf8/00new/utf8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘utf8’ as ‘utf8_1.1.4_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (utf8) * installing *source* package ‘jsonlite’ ... ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘jsonlite’ as ‘jsonlite_1.6.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (jsonlite) * installing *source* package ‘lazyeval’ ... ** package ‘lazyeval’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-lazyeval/00new/lazyeval/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘lazyeval’ as ‘lazyeval_0.2.2_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (lazyeval) * installing *source* package ‘R6’ ... ** package ‘R6’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘R6’ as ‘R6_2.4.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (R6) * installing *source* package ‘base64enc’ ... ** package ‘base64enc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-base64enc/00new/base64enc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘base64enc’ as ‘base64enc_0.1-3_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (base64enc) * installing *source* package ‘pkgconfig’ ... ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘pkgconfig’ as ‘pkgconfig_2.0.3_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (pkgconfig) * installing *source* package ‘formatR’ ... ** package ‘formatR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘formatR’ as ‘formatR_1.7_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (formatR) * installing *source* package ‘markdown’ ... ** package ‘markdown’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-markdown/00new/markdown/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘markdown’ as ‘markdown_1.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (markdown) * installing *source* package ‘stringr’ ... ** package ‘stringr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘stringr’ as ‘stringr_1.4.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (stringr) * installing *source* package ‘cli’ ... ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘cli’ as ‘cli_2.0.2_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (cli) * installing *source* package ‘ellipsis’ ... ** package ‘ellipsis’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o ellipsis.so dots.o init.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-ellipsis/00new/ellipsis/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘ellipsis’ as ‘ellipsis_0.3.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (ellipsis) * installing *source* package ‘htmltools’ ... ** package ‘htmltools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I'/home/docker/R/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I'/home/docker/R/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o /usr/bin/clang++ -std=gnu++11 -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I'/home/docker/R/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c template.cpp -o template.o /usr/bin/clang++ -std=gnu++11 -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o htmltools.so RcppExports.o init.o template.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-htmltools/00new/htmltools/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘htmltools’ as ‘htmltools_0.4.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (htmltools) * installing *source* package ‘tinytex’ ... ** package ‘tinytex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘tinytex’ as ‘tinytex_0.23_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (tinytex) * installing *source* package ‘lifecycle’ ... ** package ‘lifecycle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘lifecycle’ as ‘lifecycle_0.2.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (lifecycle) * installing *source* package ‘vctrs’ ... ** package ‘vctrs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o conditions.o dictionary.o dim.o equal.o fields.o group.o growable.o hash.o init.o names.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o version.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-vctrs/00new/vctrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘vctrs’ as ‘vctrs_0.3.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (vctrs) * installing *source* package ‘knitr’ ... ** package ‘knitr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘knitr’ as ‘knitr_1.28_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (knitr) * installing *source* package ‘htmlwidgets’ ... ** package ‘htmlwidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Failed with error: ‘there is no package called ‘shiny’’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘htmlwidgets’ as ‘htmlwidgets_1.5.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (htmlwidgets) * installing *source* package ‘crosstalk’ ... ** package ‘crosstalk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘crosstalk’ as ‘crosstalk_1.1.0.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (crosstalk) * installing *source* package ‘pillar’ ... ** package ‘pillar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘pillar’ as ‘pillar_1.4.4_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (pillar) * installing *source* package ‘rmarkdown’ ... ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘rmarkdown’ as ‘rmarkdown_2.2_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (rmarkdown) * installing *source* package ‘tibble’ ... ** package ‘tibble’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o /usr/bin/clang -I"/opt/R-devel/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o /usr/bin/clang -shared -L/opt/R-devel/lib64/R/lib -L/usr/local/lib64 -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R-devel/lib64/R/lib -lR installing to /home/docker/R/00LOCK-tibble/00new/tibble/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘tibble’ as ‘tibble_3.0.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (tibble) The downloaded source packages are in ‘/tmp/RtmpQNVfnM/downloaded_packages’ Running `R CMD build`... * checking for file ‘/tmp/RtmpQNVfnM/remotes11d4c59a1a4/upsetjs/DESCRIPTION’ ... OK * preparing ‘upsetjs’: * checking DESCRIPTION meta-information ... OK * checking vignette meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘upsetjs_1.1.0.tar.gz’ Installing package into ‘/home/docker/R’ (as ‘lib’ is unspecified) * installing *source* package ‘upsetjs’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘upsetjs’ as ‘upsetjs_1.1.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (upsetjs) > > > library(upsetjs) > > >>>>>==================== Running R CMD check About to run xvfb-run R CMD check --as-cran upsetjs_1.1.0.tar.gz * using log directory ‘/home/docker/upsetjs.Rcheck’ * using R Under development (unstable) (2020-06-12 r78687) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--as-cran’ * checking for file ‘upsetjs/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘upsetjs’ version ‘1.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: ‘Samuel Gratzl ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘upsetjs’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... WARNING Non-file package-anchored link(s) in documentation object 'reexports.Rd': ‘[magrittr]{%>%}’ See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING See ‘/home/docker/upsetjs.Rcheck/00check.log’ for details. >>>>>==================== Done with R CMD check +R-HUB-R-HUB-R-HUBecho >>>>>==================== Saving artifacts >>>>>==================== Saving artifacts +R-HUB-R-HUB-R-HUBrm -rf upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41 +R-HUB-R-HUB-R-HUBmkdir -p upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41 +R-HUB-R-HUB-R-HUBdocker cp upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-2:/tmp/output/filename . +R-HUB-R-HUB-R-HUBcat filename +R-HUB-R-HUB-R-HUBhead -1 +R-HUB-R-HUB-R-HUBpackage=upsetjs_1.1.0.tar.gz +R-HUB-R-HUB-R-HUBdocker cp upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-2:/tmp/upsetjs_1.1.0.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/ +R-HUB-R-HUB-R-HUB+R-HUB-R-HUB-R-HUBsed s/_.*$// echo upsetjs_1.1.0.tar.gz +R-HUB-R-HUB-R-HUBpkgname=upsetjs +R-HUB-R-HUB-R-HUBdocker cp upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-2:/home/docker/upsetjs.Rcheck upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/ +R-HUB-R-HUB-R-HUBmv upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/R6_2.4.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/Rcpp_1.0.4.6_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/assertthat_0.2.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/base64enc_0.1-3_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/cli_2.0.2_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/crayon_1.3.4_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/crosstalk_1.1.0.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/digest_0.6.25_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/ellipsis_0.3.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/evaluate_0.14_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/fansi_0.4.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/formatR_1.7_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/glue_1.4.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/highr_0.8_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/htmltools_0.4.0_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/htmlwidgets_1.5.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/jsonlite_1.6.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/knitr_1.28_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/lazyeval_0.2.2_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/lifecycle_0.2.0_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/magrittr_1.5_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/markdown_1.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/mime_0.9_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/pillar_1.4.4_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/pkgconfig_2.0.3_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/rlang_0.4.6_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/rmarkdown_2.2_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/stringi_1.4.6_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/stringr_1.4.0_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/tibble_3.0.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/tinytex_0.23_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/upsetjs_1.1.0.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/upsetjs_1.1.0_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/utf8_1.1.4_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/vctrs_0.3.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/xfun_0.14_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/upsetjs.Rcheck/yaml_2.2.1_R_x86_64-pc-linux-gnu.tar.gz upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/ +R-HUB-R-HUB-R-HUBdocker rm upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-1 Error response from daemon: No such container: upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-1 +R-HUB-R-HUB-R-HUBtrue +R-HUB-R-HUB-R-HUBdocker rm upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-2 upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-2 +R-HUB-R-HUB-R-HUBdocker rm upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-3 Error response from daemon: No such container: upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41-3 +R-HUB-R-HUB-R-HUBtrue +R-HUB-R-HUB-R-HUB+R-HUB-R-HUB-R-HUBgrep -q rhub echo sha256:1b5eb6e3e1c803dcf87d9e58ba3e2c3f2180c8b3805879309d82c1f807cd35e2 +R-HUB-R-HUB-R-HUBdocker rmi sha256:1b5eb6e3e1c803dcf87d9e58ba3e2c3f2180c8b3805879309d82c1f807cd35e2 Deleted: sha256:1b5eb6e3e1c803dcf87d9e58ba3e2c3f2180c8b3805879309d82c1f807cd35e2 Deleted: sha256:35453107f8a14b3546fd2ebb096dbc13239482c34b7c5e9c51ec8d97c5b7d539 SSH: Connecting from host [linux-builder-1] SSH: Connecting with configuration [files] ... SSH: Disconnecting configuration [files] ... SSH: Transferred 42 file(s) Build step 'Send files or execute commands over SSH' changed build result to SUCCESS Pinging https://builder.r-hub.io/build/SUCCESS/upsetjs_1.1.0.tar.gz-40ed94320ec746fb8917bea066332c41/2020-06-16T10:44:32Z {"status":"ok"} Finished: SUCCESS