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Vica: Software to identify highly divergent DNA and RNA viruses and phages in microbiomes
A plugin for qiime2 that runs ITSxpress
Conda recipes for the bioconda channel.
Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis
A tutorial for the QIIME2 forum
2017 microbiome workshop website
Web content for Meren Lab
Code supporting the paper "ITSxpress: software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis"
General pipeline for RNA-seq using a pre-existing transcriptome, kallisto, and DESeq2
Software Carpentry website
A rolling quality control workflow for the USDA ARS GBRU