Automated testing of workflows against
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.travis.yml Fixed this testing mode upstream I think. May 22, 2018 fix uploads Dec 14, 2018 allow configurable url Nov 6, 2018 update readme Nov 27, 2018 Workflow Testing

Based off of jmchilton's template, except running tests against


We are automatically running these workflows against

Workflow Status
GraphClust2/ Build Status
example1/ Build Status
example2/ Build Status
raceid3/ Build Status
sklearn/adaboost/ Build Status
sklearn/ard/ Build Status
training/assembly/general-introduction/ Build Status
training/assembly/unicycler-assembly/ Build Status
training/chip-seq/formation_of_super-structures_on_xi/ Build Status
training/epigenetics/hicexplorer/ Build Status
training/epigenetics/methylation-seq/ Build Status
training/metagenomics/general-tutorial/ Build Status
training/proteomics/metaproteomics/ Build Status
training/proteomics/protein-id-sg-ps/ Build Status
training/proteomics/protein_quant_sil/ Build Status
training/sequence-analysis/mapping/ Build Status
training/sequence-analysis/quality-control/ Build Status
training/sequence-analysis/ref-based-rad-seq/ Build Status
training/statistics/machine_learning/classification/ Build Status
training/statistics/machine_learning/regression/ Build Status
training/transcriptomics/ref-based/ Build Status
training/transcriptomics/small_ncrna_clustering/ Build Status
training/variant-analysis/dip/ Build Status
training/variant-analysis/mapping-by-sequencing/ Build Status
training/variant-analysis/microbial-variants/ Build Status


An introduction to workflow testing and a tutorial can be found at the Galaxy Training Network.

Pretty-printing Worfklow JSON

You can use the command line tool jq to pretty-print the workflow .ga files:

cat | jq . -S >

or this webservice: