Automated testing of workflows against UseGalaxy.eu
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README.md

UseGalaxy.eu Workflow Testing

Based off of jmchilton's template, except running tests against UseGalaxy.eu

Testing

We are automatically running these workflows against UseGalaxy.eu

Workflow Status
GraphClust2/GC-lite.ga Build Status
example1/wf3-shed-tools.ga Build Status
example2/wf4-shed-tools.ga Build Status
raceid3/raceid3_workflow.ga Build Status
sklearn/adaboost/adaboost.ga Build Status
sklearn/ard/ard.ga Build Status
training/assembly/general-introduction/assembly-general-introduction.ga Build Status
training/assembly/unicycler-assembly/unicycler.ga Build Status
training/chip-seq/formation_of_super-structures_on_xi/formation_of_super_structures_on_xi.ga Build Status
training/epigenetics/hicexplorer/hicexplorer.ga Build Status
training/epigenetics/methylation-seq/methylation-seq.ga Build Status
training/metagenomics/general-tutorial/amplicon.ga Build Status
training/proteomics/metaproteomics/metaproteomics.ga Build Status
training/proteomics/protein-id-sg-ps/protein-id-sg-ps.ga Build Status
training/proteomics/protein_quant_sil/protein_quant_sil.ga Build Status
training/sequence-analysis/mapping/mapping.ga Build Status
training/sequence-analysis/quality-control/quality_control.ga Build Status
training/sequence-analysis/ref-based-rad-seq/rad_seq_ref_based.ga Build Status
training/statistics/machine_learning/classification/linear_SVC_classification.ga Build Status
training/statistics/machine_learning/regression/gradient_boosting_regression.ga Build Status
training/transcriptomics/ref-based/ref_based.ga Build Status
training/transcriptomics/small_ncrna_clustering/blockclust_workflow.ga Build Status
training/variant-analysis/dip/diploid.ga Build Status
training/variant-analysis/mapping-by-sequencing/mapping_by_sequencing.ga Build Status
training/variant-analysis/microbial-variants/microbial_variant_calling.ga Build Status

Contributing

An introduction to workflow testing and a tutorial can be found at the Galaxy Training Network.

Pretty-printing Worfklow JSON

You can use the command line tool jq to pretty-print the workflow .ga files:

cat wf.ga | jq . -S > out.ga

or this webservice: https://jsonformatter.org/