&EBSDIndexingdata
! The line above must not be changed
!
! The values below are the default values for this program
!
!###################################################################
! INDEXING MODE
!###################################################################
!
! 'dynamic' for on the fly indexing or 'static' for pre calculated dictionary
 indexingmode = 'dynamic',
! use the normalized dot product 'ndp' or the normalized cross correlation 'ncc' as the similarity metric
 similaritymetric = 'ndp',
!
!###################################################################
! DICTIONARY PARAMETERS: COMMON TO 'STATIC' AND 'DYNAMIC'
!###################################################################
!
! do you want Email or Slack notification when the run has completed?
 Notify = 'Off',
! width of data set in pattern input file
 ipf_wd = 65,
! height of data set in pattern input file
 ipf_ht = 65,
! define the region of interest as x0 y0 w h;  leave all at 0 for full field of view
! region of interest has the point (x0,y0) as its upper left corner and is w x h patterns
 ROI = 0 0 0 0,
! X and Y sampling step sizes
 stepX = 1.5,
 stepY = 1.5,
! number of top matches to keep from the dot product results
 nnk = 50,
! the following option has been disabled starting version 4.3
! number of top matches to use for orientation averaging (<nnk)
! nnav =  20,
! number of top matches to use for Orientation Similarity Map computation (<nnk)
 nosm = 20,
! number of top matches to use for Indexing Success Map computation (<nnk)
 nism = 5,
! Indexing Success threshold angle (degrees)
 isangle = 1,
! to use a custom mask, enter the mask filename here; leave undefined for standard mask option
 maskfile = 'undefined',
! mask or not
 maskpattern = 'n',
! mask radius (in pixels, BEFORE application of the binning operation)
 maskradius = 240,
! hi pass filter w parameter; 0.05 is a reasonable value
 hipassw = 0.0625,
! number of regions for adaptive histogram equalization
 nregions = 6,

!###################################################################
! ONLY SPECIFY WHEN INDEXINGMODE IS 'DYNAMIC'
!###################################################################
!
! size of the *Experimental* patterns in pixels, and the binning factor to be used.
! Note that the binning factor is *only* applied to the experimental patterns. The 
! dictionary patterns will be declared to have the binned size. 
 exptnumsx = 156,
 exptnumsy = 128,
 binning = 1, 
! size of the *Dictionary* patterns in pixels; this will be set to be equal to the size
! of the experimental patterns divided by the binning factor by the EMEBSDDI program.
! You can set the next two parameters to the correct values if you wish, but these 
! parameters will be overwritten by the program. 
 numsx = 156,
 numsy = 128,
! number of cubochoric points to generate list of orientations for the dictionary
 ncubochoric = 180,
! tilt angle of the camera (positive below horizontal, [degrees])
 thetac = 0.0,
! angle between normal of sample and detector
 omega = 0.0,
! distance between scintillator and illumination point [microns]
 L = 4549.465,
! the following three parameters require some careful consideration.  
!=================================================================================================!
! Please check the wiki EMEBSDDI help page for detailed information on how to set these parameters!
! This process has changed starting with EMsoft 5.0.3.                                            !
!=================================================================================================!
! detector pixel size [microns]
 delta = 60.0,
! pattern center coordinates in units of pixels, origin at center of detector
 xpc = 2.34156,
 ypc = 24.36455,
!=================================================================================================!
! minimum and maximum energy to use for interpolation [keV]
 energymin = 10.0,
 energymax = 15.0,
! incident beam current [nA]
 beamcurrent = 150.0,
! beam dwell time [micro s]
 dwelltime = 30.0,
! intensity scaling mode 'not' = no scaling, 'lin' = linear, 'gam' = gamma correction
 scalingmode = 'gam',
! gamma correction factor
 gammavalue = 0.33,

!###################################################################
! INPUT FILE PARAMETERS: COMMON TO 'STATIC' AND 'DYNAMIC'
!###################################################################
!
! name of datafile where the patterns are stored; path relative to EMdatapathname
 exptfile = 'patterns_roi_64x64.dat',
! input file type parameter: Binary, EMEBSD, EMEBSD32i, EMEBSD32f, TSLHDF, TSLup2, 
!                            OxfordHDF, OxfordBinary, BrukerHDF, NORDIF
 inputtype = 'NORDIF',
! here we enter the HDF group names and data set names as individual strings (up to 10)
! enter the full path of a data set in individual strings for each group, in the correct order,
! and with the data set name as the last name; leave the remaining strings empty (they should all
! be empty for the Binary and TSLup2 formats)
 HDFstrings = '' '' '' '' '' '' '' '' '' '',
!
!###################################################################
! OTHER FILE PARAMETERS: COMMON TO 'STATIC' AND 'DYNAMIC'
!###################################################################
!
! temporary data storage file name ; will be stored in $HOME/.config/EMsoft/tmp
 tmpfile = 'EMEBSDDict_tmp.data',
! keep this tmp file after the indexing run is complete ?
 keeptmpfile = 'y',
! use an existing tmp file with the name above ?
 usetmpfile = 'n',
! output file ; path relative to EMdatapathname
 datafile = 'output_Aug_22_23_trial32.h5',
! ctf output file ; path relative to EMdatapathname
 ctffile = 'output_Aug_22_23_trial32.ctf',
! ang output file ; path relative to EMdatapathname
 angfile = 'undefined',
! euler angle input file
 eulerfile = 'undefined'

!###################################################################
! ONLY IF INDEXINGMODE IS STATIC
!###################################################################
!
 dictfile = 'undefined',
!
!###################################################################
! ONLY IF INDEXINGMODE IS DYNAMIC
!###################################################################
!
! master pattern input file; path relative to EMdatapathname
 masterfile = 'CIS_Aug_22_23_MC.h5',
!
!###################################################################
! IF REFINEMENT IS NEEDED ...
!###################################################################
!
! enter the name of the nml file for the EMFitOrientation program
 refinementNMLfile = 'undefined',
!
!###################################################################
! SYSTEM PARAMETERS: COMMON TO 'STATIC' AND 'DYNAMIC'
!###################################################################
! THE FOLLOWING TWO PARAMETERS MUST BE SET TO THE SAME VALUE TO AVOID POTENTIAL ISSUES WITH THE GPU COMPUTATION 
! THEY WILL BE REPLACED BY A SINGLE PARAMETER IN A FUTURE RELEASE
! number of dictionary files arranged in column for dot product on GPU (multiples of 16 perform better)
 numdictsingle = 1024,
! number of experimental files arranged in column for dot product on GPU (multiples of 16 perform better)
 numexptsingle = 1024,
! number of threads for parallel execution
 nthreads = 6,
! platform ID for OpenCL portion of program
 platid = 1,
! if you are running EMEBSDDI, EMECPDI, EMTKDDI, then define the device you wish to use 
 devid = 1,
! if you are running EMEBSDDImem on multiple GPUs, enter their device ids (up to eight) here; leave others at zero
 multidevid = 1 0 0 0 0 0 0 0,
! how many GPU devices do you want to use?
 usenumd = 1,
 /