##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter ##sequence-region NC_001489.1 1 7478 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=12092 NC_001489.1 RefSeq region 1 7478 . + . ID=NC_001489.1:1..7478;Dbxref=taxon:12092;gbkey=Src;genome=genomic;mol_type=genomic RNA;old-name=Hepatitis A virus NC_001489.1 RefSeq gene 1 7478 . + . ID=gene-HAVgs1;Dbxref=GeneID:1493917;Name=HAVgs1;gbkey=Gene;gene_biotype=misc_RNA;locus_tag=HAVgs1 NC_001489.1 RefSeq transcript 1 7478 . + . ID=rna-HAVgs1;Parent=gene-HAVgs1;Dbxref=GeneID:1493917;Note=hepatitis A viral genome;gbkey=misc_RNA;locus_tag=HAVgs1 NC_001489.1 RefSeq exon 1 7478 . + . ID=exon-HAVgs1-1;Parent=rna-HAVgs1;Dbxref=GeneID:1493917;Note=hepatitis A viral genome;gbkey=misc_RNA;locus_tag=HAVgs1 NC_001489.1 RefSeq gene 735 7418 . + . ID=gene-HAVgp1;Dbxref=GeneID:1493918;Name=HAVgp1;gbkey=Gene;gene_biotype=protein_coding;locus_tag=HAVgp1 NC_001489.1 RefSeq CDS 735 7418 . + 0 ID=cds-NP_041007.1;Parent=gene-HAVgp1;Dbxref=GenBank:NP_041007.1,GeneID:1493918;Name=NP_041007.1;gbkey=CDS;locus_tag=HAVgp1;product=hypothetical protein;protein_id=NP_041007.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 735 803 . + . ID=id-NP_041007.1:1..23;Parent=cds-NP_041007.1;gbkey=Prot;product=1A VP4a mature peptide (alt.);protein_id=NP_740548.1 NC_001489.1 RefSeq gene 741 7418 . + . ID=gene-HAVgp2;Dbxref=GeneID:1493919;Name=HAVgp2;gbkey=Gene;gene_biotype=protein_coding;locus_tag=HAVgp2 NC_001489.1 RefSeq CDS 741 7418 . + 0 ID=cds-NP_041008.1;Parent=gene-HAVgp2;Dbxref=GenBank:NP_041008.1,GeneID:1493919;Name=NP_041008.1;gbkey=CDS;locus_tag=HAVgp2;product=hypothetical protein;protein_id=NP_041008.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 741 803 . + . ID=id-NP_041008.1:1..21;Parent=cds-NP_041008.1;gbkey=Prot;product=1A VP4b mature peptide (alt.);protein_id=NP_740549.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 804 1469 . + . ID=id-NP_041008.1:22..243;Parent=cds-NP_041008.1;gbkey=Prot;product=1B VP2 mature peptide;protein_id=NP_740550.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 1470 2207 . + . ID=id-NP_041008.1:244..489;Parent=cds-NP_041008.1;gbkey=Prot;product=1C VP3 mature peptide;protein_id=NP_740551.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 2208 3107 . + . ID=id-NP_041008.1:490..789;Parent=cds-NP_041008.1;gbkey=Prot;product=1D VP1 mature peptide;protein_id=NP_740552.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 3108 3674 . + . ID=id-NP_041008.1:790..978;Note=Capsid assembly signal 2A is removed from the VP1-2A protein by a postassembly proteolytic event that presumably involves a host proteinase such as FXa.;Parent=cds-NP_041008.1;gbkey=Prot;product=2A mature peptide;protein_id=NP_740553.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 3675 3995 . + . ID=id-NP_041008.1:979..1085;Parent=cds-NP_041008.1;gbkey=Prot;product=2B mature peptide;protein_id=NP_740554.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 3996 5000 . + . ID=id-NP_041008.1:1086..1420;Parent=cds-NP_041008.1;gbkey=Prot;product=2C mature peptide;protein_id=NP_740555.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 5001 5222 . + . ID=id-NP_041008.1:1421..1494;Parent=cds-NP_041008.1;gbkey=Prot;product=3A mature peptide;protein_id=NP_740556.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 5223 5291 . + . ID=id-NP_041008.1:1495..1517;Parent=cds-NP_041008.1;gbkey=Prot;product=3B (VPg) mature peptide;protein_id=NP_740557.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 5292 5948 . + . ID=id-NP_041008.1:1518..1736;Parent=cds-NP_041008.1;gbkey=Prot;product=3C mature peptide;protein_id=NP_740558.1 NC_001489.1 RefSeq mature_protein_region_of_CDS 5949 7415 . + . ID=id-NP_041008.1:1737..2225;Parent=cds-NP_041008.1;gbkey=Prot;product=3D mature peptide;protein_id=NP_740559.1 NC_001489.1 RefSeq sequence_alteration 871 871 . + . ID=id-HAVgp2;Dbxref=GeneID:1493919;Note=c in pHAVlb39%2C t in pHAVlb113;gbkey=variation;locus_tag=HAVgp2 NC_001489.1 RefSeq sequence_alteration 2196 2196 . + . ID=id-HAVgp2-2;Dbxref=GeneID:1493919;Note=g in pHAVlb39%2C a in pHAVlb1307;gbkey=variation;locus_tag=HAVgp2 NC_001489.1 RefSeq sequence_alteration 6216 6216 . + . ID=id-HAVgp2-3;Dbxref=GeneID:1493919;Note=t in pHAVlb93%2C c in pHAVlb24;gbkey=variation;locus_tag=HAVgp2