Aug-16 22:08:20.256 [main] DEBUG nextflow.cli.Launcher - $> nextflow run /public/home/yqming/Software/wf-pore-c-1.1.0/ --fastq ../raw_data/Pore-C_part1.fq.gz --ref ../Gh_genome.fa --cutter DpnII -c increase_memory.config --threads 35 --paired_end_minimum_distance 100 --paired_end_maximum_distance 200 --chunk_size 40000 --filter_pairs --paired_end --hi_c --out_dir PoreC_part1 -profile singularity -with-singularity ~/Software/wf-pore-c-1.1.0/ontresearch-wf-pore-c-sha3787c234c0cacf66a67fb77da223cc2e1cb0baf0.sif -with-trace -resume Aug-16 22:08:20.349 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 23.10.1 Aug-16 22:08:20.382 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/public/home/yqming/.nextflow/plugins; core-plugins: nf-amazon@2.1.4,nf-azure@1.3.3,nf-cloudcache@0.3.0,nf-codecommit@0.1.5,nf-console@1.0.6,nf-ga4gh@1.1.0,nf-google@1.8.3,nf-tower@1.6.3,nf-wave@1.0.1 Aug-16 22:08:20.410 [main] INFO o.pf4j.DefaultPluginStatusProvider - Enabled plugins: [] Aug-16 22:08:20.412 [main] INFO o.pf4j.DefaultPluginStatusProvider - Disabled plugins: [] Aug-16 22:08:20.417 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode Aug-16 22:08:20.430 [main] INFO org.pf4j.AbstractPluginManager - No plugins Aug-16 22:08:21.794 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /public/home/yqming/Software/wf-pore-c-1.1.0/nextflow.config Aug-16 22:08:21.815 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /public/home/yqming/Work_plate/Cotton_data/Pore_data/increase_memory.config Aug-16 22:08:21.816 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /public/home/yqming/Software/wf-pore-c-1.1.0/nextflow.config Aug-16 22:08:21.816 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /public/home/yqming/Work_plate/Cotton_data/Pore_data/increase_memory.config Aug-16 22:08:21.835 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `singularity` Aug-16 22:08:22.041 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `singularity` Aug-16 22:08:22.070 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [standard, conda, singularity, awsbatch, local] Aug-16 22:08:22.081 [main] WARN nextflow.config.ConfigBuilder - It appears you have never run this project before -- Option `-resume` is ignored Aug-16 22:08:22.108 [main] DEBUG nextflow.config.ConfigBuilder - Enabling execution in Singularity container as requested by command-line option `-with-singularity null` Aug-16 22:08:22.144 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 from script declararion Aug-16 22:08:22.179 [main] INFO nextflow.cli.CmdRun - Launching `/public/home/yqming/Software/wf-pore-c-1.1.0/main.nf` [mad_elion] DSL2 - revision: cc183d633a Aug-16 22:08:22.180 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[] Aug-16 22:08:22.180 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[] Aug-16 22:08:22.194 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /public/home/yqming/.nextflow/secrets/store.json Aug-16 22:08:22.199 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@67332b1e] - activable => nextflow.secret.LocalSecretsProvider@67332b1e Aug-16 22:08:22.295 [main] DEBUG nextflow.Session - Session UUID: a11272e8-7185-4501-81d4-75efc2655b24 Aug-16 22:08:22.296 [main] DEBUG nextflow.Session - Run name: mad_elion Aug-16 22:08:22.297 [main] DEBUG nextflow.Session - Executor pool size: 36 Aug-16 22:08:22.309 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null Aug-16 22:08:22.315 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=108; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false Aug-16 22:08:22.398 [main] DEBUG nextflow.cli.CmdRun - Version: 23.10.1 build 5891 Created: 12-01-2024 22:01 UTC (13-01-2024 06:01 CDT) System: Linux 3.10.0-862.el7.x86_64 Runtime: Groovy 3.0.19 on OpenJDK 64-Bit Server VM 11.0.13+7-b1751.21 Encoding: UTF-8 (UTF-8) Process: 275840@c05n10 [10.1.5.10] CPUs: 36 - Mem: 180 GB (179.5 GB) - Swap: 0 (0) Aug-16 22:08:22.440 [main] DEBUG nextflow.Session - Work-dir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work [gpfs] Aug-16 22:08:22.511 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[] Aug-16 22:08:22.525 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory Aug-16 22:08:22.580 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory Aug-16 22:08:22.597 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 37; maxThreads: 1000 Aug-16 22:08:22.770 [main] DEBUG nextflow.Session - Session start Aug-16 22:08:22.779 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /public/home/yqming/Work_plate/Cotton_data/Pore_data/PoreC_part1/execution/trace.txt Aug-16 22:08:22.800 [main] DEBUG nextflow.Session - Using default localLib path: /public/home/yqming/Software/wf-pore-c-1.1.0/lib Aug-16 22:08:22.863 [main] DEBUG nextflow.Session - Adding to the classpath library: /public/home/yqming/Software/wf-pore-c-1.1.0/lib Aug-16 22:08:22.864 [main] DEBUG nextflow.Session - Adding to the classpath library: /public/home/yqming/Software/wf-pore-c-1.1.0/lib/nfcore_external_java_deps.jar Aug-16 22:08:25.385 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution Aug-16 22:08:27.387 [main] INFO nextflow.Nextflow - |||||||||| _____ ____ ___ ____ __ __ _____ _ _ |||||||||| | ____| _ \_ _|___ \| \/ | ____| | | __ _| |__ ___ ||||| | _| | |_) | | __) | |\/| | _| _____| |/ _` | '_ \/ __| ||||| | |___| __/| | / __/| | | | |__|_____| | (_| | |_) \__ \ |||||||||| |_____|_| |___|_____|_| |_|_____| |_|\__,_|_.__/|___/ |||||||||| wf-pore-c v1.1.0 -------------------------------------------------------------------------------- Core Nextflow options runName : mad_elion containerEngine : singularity container : [withLabel:wfporec:/public/home/yqming/Software/wf-pore-c-1.1.0/ontresearch-wf-pore-c-sha3787c234c0cacf66a67fb77da223cc2e1cb0baf0.sif, withLabel:pore_c_py:/public/home/yqming/Software/wf-pore-c-1.1.0/ontresearch-pore-c-py-shad5608368dcce93646de5559f2f391005408da6c2.sif, withLabel:wf_common:/public/home/yqming/Software/wf-pore-c-1.1.0/wf-common_sha1c5febff9f75143710826498b093d9769a5edbb9.sif, default:~/Software/wf-pore-c-1.1.0/ontresearch-wf-pore-c-sha3787c234c0cacf66a67fb77da223cc2e1cb0baf0.sif] launchDir : /public/home/yqming/Work_plate/Cotton_data/Pore_data workDir : /public/home/yqming/Work_plate/Cotton_data/Pore_data/work projectDir : /public/home/yqming/Software/wf-pore-c-1.1.0 userName : yqming profile : singularity configFiles : /public/home/yqming/Software/wf-pore-c-1.1.0/nextflow.config, /public/home/yqming/Work_plate/Cotton_data/Pore_data/increase_memory.config Input Options fastq : ../raw_data/Pore-C_part1.fq.gz ref : ../Gh_genome.fa cutter : DpnII Output Options out_dir : PoreC_part1 hi_c : true Advanced Options chunk_size : 40000 threads : 35 Paired-end BAM Options paired_end : true filter_pairs : true paired_end_minimum_distance: 100 paired_end_maximum_distance: 200 !! Only displaying parameters that differ from the pipeline defaults !! -------------------------------------------------------------------------------- If you use epi2me-labs/wf-pore-c for your analysis please cite: * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x -------------------------------------------------------------------------------- This is epi2me-labs/wf-pore-c v1.1.0. -------------------------------------------------------------------------------- Aug-16 22:08:29.116 [main] INFO nextflow.Nextflow - Searching input for [.fastq, .fastq.gz, .fq, .fq.gz] files. Aug-16 22:08:29.383 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wf_common` matches labels `ingress,wf_common` for process with name POREC:fastcat Aug-16 22:08:29.392 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.392 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.400 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local Aug-16 22:08:29.408 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=36; memory=180 GB; capacity=36; pollInterval=100ms; dumpInterval=5m Aug-16 22:08:29.412 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local) Aug-16 22:08:29.525 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:index_bam Aug-16 22:08:29.526 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.527 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.548 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:prepare_genome:index_ref_fai Aug-16 22:08:29.549 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.549 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.574 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:prepare_genome:index_ref_mmi Aug-16 22:08:29.575 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.575 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.611 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:pore_c_py` matches labels `pore_c_py` for process with name POREC:digest_align_annotate Aug-16 22:08:29.613 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.613 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.640 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:haplotag_alignments Aug-16 22:08:29.642 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.642 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.660 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:merge_coordsorted_bams Aug-16 22:08:29.661 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:merge_coordsorted_bams|merge_namesorted_bams` matches process POREC:merge_coordsorted_bams Aug-16 22:08:29.662 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.663 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.676 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:merge_namesorted_bams Aug-16 22:08:29.677 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:merge_coordsorted_bams|merge_namesorted_bams` matches process POREC:merge_namesorted_bams Aug-16 22:08:29.678 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.678 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.702 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:create_restriction_bed Aug-16 22:08:29.702 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:merge_pairs|merge_pairs_stats|merge_mcools|create_restriction_bed|pair_stats_report` matches process POREC:create_restriction_bed Aug-16 22:08:29.703 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.703 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.718 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:to_pairs_file Aug-16 22:08:29.719 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.719 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.727 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:merge_pairs Aug-16 22:08:29.727 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:merge_pairs|merge_pairs_stats|merge_mcools|create_restriction_bed|pair_stats_report` matches process POREC:merge_pairs Aug-16 22:08:29.728 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.728 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.733 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:merge_pairs_stats Aug-16 22:08:29.734 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:merge_pairs|merge_pairs_stats|merge_mcools|create_restriction_bed|pair_stats_report` matches process POREC:merge_pairs_stats Aug-16 22:08:29.735 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.735 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.739 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:pair_stats_report Aug-16 22:08:29.739 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:merge_pairs|merge_pairs_stats|merge_mcools|create_restriction_bed|pair_stats_report` matches process POREC:pair_stats_report Aug-16 22:08:29.740 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.740 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:merge_paired_end_bams Aug-16 22:08:29.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:merge_coordsorted_bams|merge_namesorted_bams` matches process POREC:merge_paired_end_bams Aug-16 22:08:29.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:merge_paired_end_bams` matches process POREC:merge_paired_end_bams Aug-16 22:08:29.748 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.748 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.751 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:getVersions Aug-16 22:08:29.753 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.753 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.756 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:getParams Aug-16 22:08:29.758 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.758 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.773 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:makeReport Aug-16 22:08:29.773 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:makeReport` matches process POREC:makeReport Aug-16 22:08:29.774 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.774 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.779 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:prepare_hic Aug-16 22:08:29.780 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:prepare_hic` matches process POREC:prepare_hic Aug-16 22:08:29.780 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.780 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.794 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name POREC:get_filtered_out_bam Aug-16 22:08:29.794 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:get_filtered_out_bam` matches process POREC:get_filtered_out_bam Aug-16 22:08:29.795 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.795 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.799 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:wfporec` matches labels `wfporec` for process with name output Aug-16 22:08:29.799 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Aug-16 22:08:29.799 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Aug-16 22:08:29.802 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: move_or_compress_fq_file, haplotag_alignments, pair_stats_report, haplotagReads, POREC:makeReport, POREC:prepare_genome:index_ref_mmi, POREC:merge_coordsorted_bams, prepare_hic, checkBamHeaders, merge_pairs_stats, mergeBams, output, POREC:getVersions, merge_coordsorted_bams, makeReport, POREC:prepare_hic, getVersions, POREC:merge_paired_end_bams, POREC:fastcat, POREC:get_filtered_out_bam, index_ref_mmi, POREC:merge_namesorted_bams, mosdepth_coverage, merge_pairs, bamstats, merge_namesorted_bams, fastcat, pairsToCooler, POREC:to_pairs_file, to_pairs_file, merge_paired_end_bams, getParams, POREC:merge_pairs, sortBam, index_bam, merge_parquets_to_dataset, validate_sample_sheet, POREC:index_bam, POREC:merge_pairs_stats, createBed, POREC:getParams, POREC:pair_stats_report, POREC:prepare_genome:index_ref_fai, index_ref_fai, digest_align_annotate, create_restriction_bed, publish_artifact, POREC:create_restriction_bed, POREC:haplotag_alignments, merge_mcools, POREC:digest_align_annotate, decompress_ref, get_filtered_out_bam, catSortBams Aug-16 22:08:29.804 [main] DEBUG nextflow.Session - Igniting dataflow network (23) Aug-16 22:08:29.805 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:fastcat Aug-16 22:08:29.806 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:index_bam Aug-16 22:08:29.819 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:prepare_genome:index_ref_fai Aug-16 22:08:29.819 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:prepare_genome:index_ref_mmi Aug-16 22:08:29.819 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:digest_align_annotate Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:haplotag_alignments Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:merge_coordsorted_bams Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:merge_namesorted_bams Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:create_restriction_bed Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:to_pairs_file Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:merge_pairs Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:merge_pairs_stats Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:pair_stats_report Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:merge_paired_end_bams Aug-16 22:08:29.820 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:getVersions Aug-16 22:08:29.821 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:getParams Aug-16 22:08:29.821 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:makeReport Aug-16 22:08:29.821 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:prepare_hic Aug-16 22:08:29.822 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > POREC:get_filtered_out_bam Aug-16 22:08:29.822 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > output Aug-16 22:08:29.822 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files: Script_a004c86652788981: /public/home/yqming/Software/wf-pore-c-1.1.0/./modules/local/4dn.nf Script_6183ff06cb5d1fd0: /public/home/yqming/Software/wf-pore-c-1.1.0/main.nf Script_e8e8e89ec33b6973: /public/home/yqming/Software/wf-pore-c-1.1.0/./subworkflows/local/../../modules/local/common.nf Script_88e1f22baeec41c5: /public/home/yqming/Software/wf-pore-c-1.1.0/./modules/local/pore-c.nf Script_6f2dfe738e879fd7: /public/home/yqming/Software/wf-pore-c-1.1.0/./subworkflows/local/prepare_genome.nf Script_52f11d1ddf9ca2a2: /public/home/yqming/Software/wf-pore-c-1.1.0/./lib/ingress.nf Aug-16 22:08:29.822 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination Aug-16 22:08:29.822 [main] DEBUG nextflow.Session - Session await Aug-16 22:08:30.098 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 22:08:30.102 [Task submitter] INFO nextflow.Session - [f4/9c8709] Submitted process > POREC:fastcat (1) Aug-16 22:08:30.117 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 22:08:30.118 [Task submitter] INFO nextflow.Session - [c8/0cf48e] Submitted process > POREC:prepare_genome:index_ref_mmi (1) Aug-16 22:10:00.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: POREC:prepare_genome:index_ref_mmi (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/0cf48eb5ed6534f83121562946abbe] Aug-16 22:10:00.452 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 22:10:00.454 [Task submitter] INFO nextflow.Session - [dc/fc860e] Submitted process > POREC:prepare_genome:index_ref_fai (1) Aug-16 22:10:12.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: POREC:prepare_genome:index_ref_fai (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/fc860e25b0c2fbaadc664a77fb1ad3] Aug-16 22:10:12.862 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 22:10:12.863 [Task submitter] INFO nextflow.Session - [c4/28f3ad] Submitted process > POREC:getParams Aug-16 22:10:13.320 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: POREC:getParams; status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/28f3ad536d622d5983195859cce3dd] Aug-16 22:10:13.330 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 22:10:13.331 [Task submitter] INFO nextflow.Session - [0c/5f1047] Submitted process > POREC:getVersions Aug-16 22:10:23.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: POREC:getVersions; status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/5f1047d02726c513ad394216b64ef2] Aug-16 22:13:29.601 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:18:29.655 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:23:29.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:28:29.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:33:29.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:38:29.859 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:43:29.917 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:48:30.013 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:53:30.088 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 22:58:30.152 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:03:30.199 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:08:30.254 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:13:30.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:18:30.340 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:23:30.427 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:28:30.476 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:33:30.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:38:30.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:43:30.683 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:48:30.759 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 3; name: POREC:fastcat (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:53:17.906 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: POREC:fastcat (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/9c87091ad699cdc5bee3ba2baee2f0] Aug-16 23:53:18.143 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 23:53:18.143 [Task submitter] INFO nextflow.Session - [35/b384d6] Submitted process > output (1) Aug-16 23:53:18.173 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 8; name: POREC:makeReport; status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/8999b93fe569ed06ca479a0e75a496] Aug-16 23:53:18.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: output (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/b384d61c794ecf9aaf4f1db54c23b9] Aug-16 23:53:18.859 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 23:53:18.860 [Task submitter] INFO nextflow.Session - [c6/8999b9] Submitted process > POREC:makeReport Aug-16 23:53:18.865 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=108; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false Aug-16 23:53:30.764 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 8; name: POREC:makeReport; status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/8999b93fe569ed06ca479a0e75a496] Aug-16 23:55:52.804 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: POREC:makeReport; status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/8999b93fe569ed06ca479a0e75a496] Aug-16 23:55:52.819 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 23:55:52.821 [Task submitter] INFO nextflow.Session - [f9/8dc3d3] Submitted process > POREC:index_bam (1) Aug-16 23:58:30.821 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 6; name: POREC:index_bam (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/8dc3d3d4ab27e41cd840c246415389] Aug-16 23:59:03.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: POREC:index_bam (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/8dc3d3d4ab27e41cd840c246415389] Aug-16 23:59:03.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-16 23:59:03.778 [Task submitter] INFO nextflow.Session - [1c/57a15b] Submitted process > POREC:create_restriction_bed (1) Aug-16 23:59:04.014 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 2 -- tasks to be submitted are shown below ~> TaskHandler[id: 44; name: POREC:digest_align_annotate (35); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/54f987de4f1077d3224ea613378150] ~> TaskHandler[id: 32; name: POREC:digest_align_annotate (23); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/6387f543c0baaca55a06f2e34f54e3] Aug-17 00:01:01.622 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: POREC:create_restriction_bed (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/57a15bf7ed77f2cc834c454ffa3295] Aug-17 00:01:01.635 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:01:01.635 [Task submitter] INFO nextflow.Session - [49/54f987] Submitted process > POREC:digest_align_annotate (35) Aug-17 00:02:17.674 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 44; name: POREC:digest_align_annotate (35); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/54f987de4f1077d3224ea613378150] Aug-17 00:02:17.681 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (35)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/54f987de4f1077d3224ea613378150/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:02:17.684 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:02:17.698 [Task submitter] INFO nextflow.Session - [51/6387f5] Submitted process > POREC:digest_align_annotate (23) Aug-17 00:02:17.808 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:03:30.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 32; name: POREC:digest_align_annotate (23); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/6387f543c0baaca55a06f2e34f54e3] Aug-17 00:03:33.118 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 32; name: POREC:digest_align_annotate (23); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/6387f543c0baaca55a06f2e34f54e3] Aug-17 00:03:33.122 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (23)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/6387f543c0baaca55a06f2e34f54e3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:03:33.125 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:03:33.130 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:03:33.130 [Task submitter] INFO nextflow.Session - [ba/193acd] Submitted process > POREC:digest_align_annotate (32) Aug-17 00:04:04.252 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 42; name: POREC:digest_align_annotate (33); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/fca7c19059daf9d3fc85dc28f517e2] ~> TaskHandler[id: 20; name: POREC:digest_align_annotate (11); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/38f3333d048152531b64b356746fe2] ~> TaskHandler[id: 24; name: POREC:digest_align_annotate (15); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/c43a4ecaa0e3ec68085e346ad31bb6] ~> TaskHandler[id: 12; name: POREC:digest_align_annotate (3); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/c6ad2b1a4bc8ca3e18bde771a92cce] ~> TaskHandler[id: 14; name: POREC:digest_align_annotate (5); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/6c1faf704f0ec90cb9453476fde916] ~> TaskHandler[id: 29; name: POREC:digest_align_annotate (20); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/886f0791f3247b641bae54452dea6b] ~> TaskHandler[id: 30; name: POREC:digest_align_annotate (21); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/3388a73ceb6078445dec2e4e5e645d] ~> TaskHandler[id: 34; name: POREC:digest_align_annotate (25); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/23f234909e739e2f8fc2026867392b] ~> TaskHandler[id: 45; name: POREC:digest_align_annotate (36); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/825483e673ee5603f5f29ea449ffb1] ~> TaskHandler[id: 13; name: POREC:digest_align_annotate (4); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/9d06081a5d43f121b1ddfeac5e0c12] .. remaining tasks omitted. Aug-17 00:04:46.899 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 41; name: POREC:digest_align_annotate (32); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/193acd5b77f653401ccabe25eb9785] Aug-17 00:04:46.901 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (32)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/193acd5b77f653401ccabe25eb9785/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:04:46.903 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:04:46.906 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:04:46.907 [Task submitter] INFO nextflow.Session - [a1/fca7c1] Submitted process > POREC:digest_align_annotate (33) Aug-17 00:06:03.490 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 42; name: POREC:digest_align_annotate (33); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/fca7c19059daf9d3fc85dc28f517e2] Aug-17 00:06:03.493 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (33)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/fca7c19059daf9d3fc85dc28f517e2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:06:03.495 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:06:03.502 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:06:03.502 [Task submitter] INFO nextflow.Session - [b9/38f333] Submitted process > POREC:digest_align_annotate (11) Aug-17 00:07:19.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 20; name: POREC:digest_align_annotate (11); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/38f3333d048152531b64b356746fe2] Aug-17 00:07:19.574 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (11)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/38f3333d048152531b64b356746fe2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:07:19.575 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:07:19.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:07:19.582 [Task submitter] INFO nextflow.Session - [28/c43a4e] Submitted process > POREC:digest_align_annotate (15) Aug-17 00:08:30.968 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 24; name: POREC:digest_align_annotate (15); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/c43a4ecaa0e3ec68085e346ad31bb6] Aug-17 00:08:40.184 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 24; name: POREC:digest_align_annotate (15); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/c43a4ecaa0e3ec68085e346ad31bb6] Aug-17 00:08:40.185 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (15)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/c43a4ecaa0e3ec68085e346ad31bb6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:08:40.192 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:08:40.209 [Task submitter] INFO nextflow.Session - [a6/c6ad2b] Submitted process > POREC:digest_align_annotate (3) Aug-17 00:08:40.210 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:09:04.301 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 14; name: POREC:digest_align_annotate (5); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/6c1faf704f0ec90cb9453476fde916] ~> TaskHandler[id: 29; name: POREC:digest_align_annotate (20); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/886f0791f3247b641bae54452dea6b] ~> TaskHandler[id: 30; name: POREC:digest_align_annotate (21); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/3388a73ceb6078445dec2e4e5e645d] ~> TaskHandler[id: 34; name: POREC:digest_align_annotate (25); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/23f234909e739e2f8fc2026867392b] ~> TaskHandler[id: 45; name: POREC:digest_align_annotate (36); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/825483e673ee5603f5f29ea449ffb1] ~> TaskHandler[id: 13; name: POREC:digest_align_annotate (4); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/9d06081a5d43f121b1ddfeac5e0c12] ~> TaskHandler[id: 10; name: POREC:digest_align_annotate (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/5c3ed59257e1103cbaccd002948552] ~> TaskHandler[id: 35; name: POREC:digest_align_annotate (26); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/e886b1597b2695bbef36b66963e70d] ~> TaskHandler[id: 16; name: POREC:digest_align_annotate (7); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/46a5a2bbd1b1513d770b5e910642d4] ~> TaskHandler[id: 39; name: POREC:digest_align_annotate (30); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/c34607ae64c0e0c61f506337a2e4ba] .. remaining tasks omitted. Aug-17 00:09:54.682 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: POREC:digest_align_annotate (3); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/c6ad2b1a4bc8ca3e18bde771a92cce] Aug-17 00:09:54.684 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (3)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/c6ad2b1a4bc8ca3e18bde771a92cce/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:09:54.686 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:09:54.688 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:09:54.689 [Task submitter] INFO nextflow.Session - [53/6c1faf] Submitted process > POREC:digest_align_annotate (5) Aug-17 00:11:12.525 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 14; name: POREC:digest_align_annotate (5); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/6c1faf704f0ec90cb9453476fde916] Aug-17 00:11:12.528 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (5)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/6c1faf704f0ec90cb9453476fde916/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:11:12.535 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:11:12.542 [Task submitter] INFO nextflow.Session - [a1/886f07] Submitted process > POREC:digest_align_annotate (20) Aug-17 00:11:12.547 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:12:28.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 29; name: POREC:digest_align_annotate (20); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/886f0791f3247b641bae54452dea6b] Aug-17 00:12:28.544 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (20)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/886f0791f3247b641bae54452dea6b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:12:28.545 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:12:28.550 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:12:28.551 [Task submitter] INFO nextflow.Session - [8d/3388a7] Submitted process > POREC:digest_align_annotate (21) Aug-17 00:13:31.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 30; name: POREC:digest_align_annotate (21); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/3388a73ceb6078445dec2e4e5e645d] Aug-17 00:13:43.438 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 30; name: POREC:digest_align_annotate (21); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/3388a73ceb6078445dec2e4e5e645d] Aug-17 00:13:43.440 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (21)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/3388a73ceb6078445dec2e4e5e645d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:13:43.442 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:13:43.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:13:43.446 [Task submitter] INFO nextflow.Session - [c3/23f234] Submitted process > POREC:digest_align_annotate (25) Aug-17 00:14:04.528 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 45; name: POREC:digest_align_annotate (36); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/825483e673ee5603f5f29ea449ffb1] ~> TaskHandler[id: 13; name: POREC:digest_align_annotate (4); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/9d06081a5d43f121b1ddfeac5e0c12] ~> TaskHandler[id: 10; name: POREC:digest_align_annotate (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/5c3ed59257e1103cbaccd002948552] ~> TaskHandler[id: 35; name: POREC:digest_align_annotate (26); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/e886b1597b2695bbef36b66963e70d] ~> TaskHandler[id: 16; name: POREC:digest_align_annotate (7); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/46a5a2bbd1b1513d770b5e910642d4] ~> TaskHandler[id: 39; name: POREC:digest_align_annotate (30); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/c34607ae64c0e0c61f506337a2e4ba] ~> TaskHandler[id: 43; name: POREC:digest_align_annotate (34); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9830eb527016d436b66497bd0877a6] ~> TaskHandler[id: 31; name: POREC:digest_align_annotate (22); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/1ea80268bbafb697c69ad05d731eb2] ~> TaskHandler[id: 17; name: POREC:digest_align_annotate (8); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/474ab4706c15731c4361d0fea3bcae] ~> TaskHandler[id: 37; name: POREC:digest_align_annotate (28); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/cf67c30141ae238aa86cb1446b9d51] .. remaining tasks omitted. Aug-17 00:14:59.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 34; name: POREC:digest_align_annotate (25); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/23f234909e739e2f8fc2026867392b] Aug-17 00:14:59.333 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (25)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/23f234909e739e2f8fc2026867392b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:14:59.335 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:14:59.341 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:14:59.341 [Task submitter] INFO nextflow.Session - [8a/825483] Submitted process > POREC:digest_align_annotate (36) Aug-17 00:16:11.998 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 45; name: POREC:digest_align_annotate (36); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/825483e673ee5603f5f29ea449ffb1] Aug-17 00:16:12.001 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (36)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/825483e673ee5603f5f29ea449ffb1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:16:12.003 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:16:12.009 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:16:12.010 [Task submitter] INFO nextflow.Session - [b9/9d0608] Submitted process > POREC:digest_align_annotate (4) Aug-17 00:17:26.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: POREC:digest_align_annotate (4); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/9d06081a5d43f121b1ddfeac5e0c12] Aug-17 00:17:26.194 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (4)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/9d06081a5d43f121b1ddfeac5e0c12/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:17:26.195 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:17:26.200 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:17:26.212 [Task submitter] INFO nextflow.Session - [a1/5c3ed5] Submitted process > POREC:digest_align_annotate (1) Aug-17 00:18:31.078 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 10; name: POREC:digest_align_annotate (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/5c3ed59257e1103cbaccd002948552] Aug-17 00:18:40.039 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: POREC:digest_align_annotate (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/5c3ed59257e1103cbaccd002948552] Aug-17 00:18:40.040 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (1)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/5c3ed59257e1103cbaccd002948552/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:18:40.042 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:18:40.047 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:18:40.047 [Task submitter] INFO nextflow.Session - [6e/e886b1] Submitted process > POREC:digest_align_annotate (26) Aug-17 00:19:05.146 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 16; name: POREC:digest_align_annotate (7); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/46a5a2bbd1b1513d770b5e910642d4] ~> TaskHandler[id: 39; name: POREC:digest_align_annotate (30); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/c34607ae64c0e0c61f506337a2e4ba] ~> TaskHandler[id: 43; name: POREC:digest_align_annotate (34); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9830eb527016d436b66497bd0877a6] ~> TaskHandler[id: 31; name: POREC:digest_align_annotate (22); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/1ea80268bbafb697c69ad05d731eb2] ~> TaskHandler[id: 17; name: POREC:digest_align_annotate (8); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/474ab4706c15731c4361d0fea3bcae] ~> TaskHandler[id: 37; name: POREC:digest_align_annotate (28); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/cf67c30141ae238aa86cb1446b9d51] ~> TaskHandler[id: 19; name: POREC:digest_align_annotate (10); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/c666ee68299176c9d70665ecb47977] ~> TaskHandler[id: 47; name: POREC:digest_align_annotate (38); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/20083d721d47a8783ecbd4a2a8b1d1] ~> TaskHandler[id: 26; name: POREC:digest_align_annotate (17); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ca612e1c04964b24faffe5a45adc80] ~> TaskHandler[id: 40; name: POREC:digest_align_annotate (31); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/0244d06cee056c9280473063ed6c2f] .. remaining tasks omitted. Aug-17 00:19:51.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 35; name: POREC:digest_align_annotate (26); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/e886b1597b2695bbef36b66963e70d] Aug-17 00:19:51.823 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (26)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/e886b1597b2695bbef36b66963e70d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:19:51.825 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:19:51.837 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:19:51.838 [Task submitter] INFO nextflow.Session - [1e/46a5a2] Submitted process > POREC:digest_align_annotate (7) Aug-17 00:21:07.990 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: POREC:digest_align_annotate (7); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/46a5a2bbd1b1513d770b5e910642d4] Aug-17 00:21:07.992 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (7)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/46a5a2bbd1b1513d770b5e910642d4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:21:07.996 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:21:07.999 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:21:08.000 [Task submitter] INFO nextflow.Session - [b3/c34607] Submitted process > POREC:digest_align_annotate (30) Aug-17 00:22:22.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 39; name: POREC:digest_align_annotate (30); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/c34607ae64c0e0c61f506337a2e4ba] Aug-17 00:22:22.676 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (30)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/c34607ae64c0e0c61f506337a2e4ba/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:22:22.679 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:22:22.684 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:22:22.686 [Task submitter] INFO nextflow.Session - [27/9830eb] Submitted process > POREC:digest_align_annotate (34) Aug-17 00:23:31.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 43; name: POREC:digest_align_annotate (34); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9830eb527016d436b66497bd0877a6] Aug-17 00:23:36.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 43; name: POREC:digest_align_annotate (34); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9830eb527016d436b66497bd0877a6] Aug-17 00:23:36.686 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (34)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9830eb527016d436b66497bd0877a6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:23:36.687 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:23:36.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:23:36.701 [Task submitter] INFO nextflow.Session - [95/1ea802] Submitted process > POREC:digest_align_annotate (22) Aug-17 00:24:05.804 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 17; name: POREC:digest_align_annotate (8); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/474ab4706c15731c4361d0fea3bcae] ~> TaskHandler[id: 37; name: POREC:digest_align_annotate (28); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/cf67c30141ae238aa86cb1446b9d51] ~> TaskHandler[id: 19; name: POREC:digest_align_annotate (10); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/c666ee68299176c9d70665ecb47977] ~> TaskHandler[id: 47; name: POREC:digest_align_annotate (38); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/20083d721d47a8783ecbd4a2a8b1d1] ~> TaskHandler[id: 26; name: POREC:digest_align_annotate (17); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ca612e1c04964b24faffe5a45adc80] ~> TaskHandler[id: 40; name: POREC:digest_align_annotate (31); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/0244d06cee056c9280473063ed6c2f] ~> TaskHandler[id: 28; name: POREC:digest_align_annotate (19); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/ac4f868885f7153a5b6472ea8266c4] ~> TaskHandler[id: 23; name: POREC:digest_align_annotate (14); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/c1e0d1b752f02cf4bcb45a8d60f996] ~> TaskHandler[id: 50; name: POREC:digest_align_annotate (41); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/4121c60938aea4ad200708143417cc] ~> TaskHandler[id: 36; name: POREC:digest_align_annotate (27); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/421cc6fc6f70e35d1901ad9c133969] .. remaining tasks omitted. Aug-17 00:24:51.647 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 31; name: POREC:digest_align_annotate (22); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/1ea80268bbafb697c69ad05d731eb2] Aug-17 00:24:51.648 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (22)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/1ea80268bbafb697c69ad05d731eb2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:24:51.650 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:24:51.655 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:24:51.655 [Task submitter] INFO nextflow.Session - [01/474ab4] Submitted process > POREC:digest_align_annotate (8) Aug-17 00:26:08.242 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 17; name: POREC:digest_align_annotate (8); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/474ab4706c15731c4361d0fea3bcae] Aug-17 00:26:08.245 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (8)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/474ab4706c15731c4361d0fea3bcae/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:26:08.253 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:26:08.259 [Task submitter] INFO nextflow.Session - [48/cf67c3] Submitted process > POREC:digest_align_annotate (28) Aug-17 00:26:08.260 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:27:23.379 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 37; name: POREC:digest_align_annotate (28); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/cf67c30141ae238aa86cb1446b9d51] Aug-17 00:27:23.382 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (28)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/cf67c30141ae238aa86cb1446b9d51/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:27:23.384 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:27:23.389 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:27:23.394 [Task submitter] INFO nextflow.Session - [33/c666ee] Submitted process > POREC:digest_align_annotate (10) Aug-17 00:28:31.165 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 19; name: POREC:digest_align_annotate (10); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/c666ee68299176c9d70665ecb47977] Aug-17 00:28:43.070 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 19; name: POREC:digest_align_annotate (10); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/c666ee68299176c9d70665ecb47977] Aug-17 00:28:43.072 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (10)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/c666ee68299176c9d70665ecb47977/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:28:43.074 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:28:43.079 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:28:43.080 [Task submitter] INFO nextflow.Session - [ba/20083d] Submitted process > POREC:digest_align_annotate (38) Aug-17 00:29:06.157 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 26; name: POREC:digest_align_annotate (17); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ca612e1c04964b24faffe5a45adc80] ~> TaskHandler[id: 40; name: POREC:digest_align_annotate (31); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/0244d06cee056c9280473063ed6c2f] ~> TaskHandler[id: 28; name: POREC:digest_align_annotate (19); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/ac4f868885f7153a5b6472ea8266c4] ~> TaskHandler[id: 23; name: POREC:digest_align_annotate (14); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/c1e0d1b752f02cf4bcb45a8d60f996] ~> TaskHandler[id: 50; name: POREC:digest_align_annotate (41); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/4121c60938aea4ad200708143417cc] ~> TaskHandler[id: 36; name: POREC:digest_align_annotate (27); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/421cc6fc6f70e35d1901ad9c133969] ~> TaskHandler[id: 27; name: POREC:digest_align_annotate (18); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/3063d2423d2f5b34b06bc624c366ed] ~> TaskHandler[id: 21; name: POREC:digest_align_annotate (12); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/65967c0559667a4f29e452789d5336] ~> TaskHandler[id: 15; name: POREC:digest_align_annotate (6); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/1ec634fe3cd8292b818147b35ebf9a] ~> TaskHandler[id: 38; name: POREC:digest_align_annotate (29); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/24b8afb1c7e861becd77e9a4fe488f] .. remaining tasks omitted. Aug-17 00:30:05.754 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 47; name: POREC:digest_align_annotate (38); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/20083d721d47a8783ecbd4a2a8b1d1] Aug-17 00:30:05.756 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (38)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/20083d721d47a8783ecbd4a2a8b1d1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:30:05.757 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:30:05.775 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:30:05.775 [Task submitter] INFO nextflow.Session - [aa/ca612e] Submitted process > POREC:digest_align_annotate (17) Aug-17 00:31:28.250 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 26; name: POREC:digest_align_annotate (17); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ca612e1c04964b24faffe5a45adc80] Aug-17 00:31:28.253 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (17)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ca612e1c04964b24faffe5a45adc80/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:31:28.255 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:31:28.271 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:31:28.272 [Task submitter] INFO nextflow.Session - [50/0244d0] Submitted process > POREC:digest_align_annotate (31) Aug-17 00:32:41.476 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 40; name: POREC:digest_align_annotate (31); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/0244d06cee056c9280473063ed6c2f] Aug-17 00:32:41.477 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (31)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/0244d06cee056c9280473063ed6c2f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:32:41.478 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:32:41.481 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:32:41.501 [Task submitter] INFO nextflow.Session - [4a/ac4f86] Submitted process > POREC:digest_align_annotate (19) Aug-17 00:33:31.234 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 28; name: POREC:digest_align_annotate (19); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/ac4f868885f7153a5b6472ea8266c4] Aug-17 00:33:58.686 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 28; name: POREC:digest_align_annotate (19); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/ac4f868885f7153a5b6472ea8266c4] Aug-17 00:33:58.688 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (19)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/ac4f868885f7153a5b6472ea8266c4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:33:58.690 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:33:58.695 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:33:58.696 [Task submitter] INFO nextflow.Session - [79/c1e0d1] Submitted process > POREC:digest_align_annotate (14) Aug-17 00:34:06.727 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 50; name: POREC:digest_align_annotate (41); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/4121c60938aea4ad200708143417cc] ~> TaskHandler[id: 36; name: POREC:digest_align_annotate (27); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/421cc6fc6f70e35d1901ad9c133969] ~> TaskHandler[id: 27; name: POREC:digest_align_annotate (18); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/3063d2423d2f5b34b06bc624c366ed] ~> TaskHandler[id: 21; name: POREC:digest_align_annotate (12); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/65967c0559667a4f29e452789d5336] ~> TaskHandler[id: 15; name: POREC:digest_align_annotate (6); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/1ec634fe3cd8292b818147b35ebf9a] ~> TaskHandler[id: 38; name: POREC:digest_align_annotate (29); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/24b8afb1c7e861becd77e9a4fe488f] ~> TaskHandler[id: 33; name: POREC:digest_align_annotate (24); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/3fb8d3460f1e7b9e419ab5e44d06a4] ~> TaskHandler[id: 52; name: POREC:digest_align_annotate (43); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/0ee988fccb727bed02eec4322ac340] ~> TaskHandler[id: 22; name: POREC:digest_align_annotate (13); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/235f8ba02374715e0ad83e6bc215e0] ~> TaskHandler[id: 18; name: POREC:digest_align_annotate (9); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/c9a47665457ab0cb06bf3293a21de8] .. remaining tasks omitted. Aug-17 00:35:15.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 23; name: POREC:digest_align_annotate (14); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/c1e0d1b752f02cf4bcb45a8d60f996] Aug-17 00:35:15.543 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (14)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/c1e0d1b752f02cf4bcb45a8d60f996/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:35:15.545 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:35:15.551 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:35:15.551 [Task submitter] INFO nextflow.Session - [8d/4121c6] Submitted process > POREC:digest_align_annotate (41) Aug-17 00:36:31.102 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 50; name: POREC:digest_align_annotate (41); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/4121c60938aea4ad200708143417cc] Aug-17 00:36:31.103 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (41)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/4121c60938aea4ad200708143417cc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:36:31.104 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:36:31.109 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:36:31.109 [Task submitter] INFO nextflow.Session - [2e/421cc6] Submitted process > POREC:digest_align_annotate (27) Aug-17 00:37:43.774 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 36; name: POREC:digest_align_annotate (27); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/421cc6fc6f70e35d1901ad9c133969] Aug-17 00:37:43.776 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (27)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/421cc6fc6f70e35d1901ad9c133969/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:37:43.777 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:37:43.785 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:37:43.785 [Task submitter] INFO nextflow.Session - [79/3063d2] Submitted process > POREC:digest_align_annotate (18) Aug-17 00:38:31.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 27; name: POREC:digest_align_annotate (18); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/3063d2423d2f5b34b06bc624c366ed] Aug-17 00:39:00.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 27; name: POREC:digest_align_annotate (18); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/3063d2423d2f5b34b06bc624c366ed] Aug-17 00:39:00.661 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (18)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/3063d2423d2f5b34b06bc624c366ed/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:39:00.663 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:39:00.668 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:39:00.670 [Task submitter] INFO nextflow.Session - [d7/65967c] Submitted process > POREC:digest_align_annotate (12) Aug-17 00:39:07.706 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 15; name: POREC:digest_align_annotate (6); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/1ec634fe3cd8292b818147b35ebf9a] ~> TaskHandler[id: 38; name: POREC:digest_align_annotate (29); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/24b8afb1c7e861becd77e9a4fe488f] ~> TaskHandler[id: 33; name: POREC:digest_align_annotate (24); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/3fb8d3460f1e7b9e419ab5e44d06a4] ~> TaskHandler[id: 52; name: POREC:digest_align_annotate (43); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/0ee988fccb727bed02eec4322ac340] ~> TaskHandler[id: 22; name: POREC:digest_align_annotate (13); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/235f8ba02374715e0ad83e6bc215e0] ~> TaskHandler[id: 18; name: POREC:digest_align_annotate (9); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/c9a47665457ab0cb06bf3293a21de8] ~> TaskHandler[id: 25; name: POREC:digest_align_annotate (16); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/86c9839cbec196e58acfc514dcfb03] ~> TaskHandler[id: 11; name: POREC:digest_align_annotate (2); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/c5d8ca4d9229cb1f2ee8241748553f] ~> TaskHandler[id: 46; name: POREC:digest_align_annotate (37); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/cba8dd957eea721d165bf78f12724e] ~> TaskHandler[id: 51; name: POREC:digest_align_annotate (42); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/124e449aa6a29f02bacd0b8eae8ef5] .. remaining tasks omitted. Aug-17 00:40:18.250 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 21; name: POREC:digest_align_annotate (12); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/65967c0559667a4f29e452789d5336] Aug-17 00:40:18.251 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (12)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/65967c0559667a4f29e452789d5336/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:40:18.253 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:40:18.257 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:40:18.257 [Task submitter] INFO nextflow.Session - [fb/1ec634] Submitted process > POREC:digest_align_annotate (6) Aug-17 00:41:38.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 15; name: POREC:digest_align_annotate (6); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/1ec634fe3cd8292b818147b35ebf9a] Aug-17 00:41:38.197 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (6)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/1ec634fe3cd8292b818147b35ebf9a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:41:38.220 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:41:38.320 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:41:38.320 [Task submitter] INFO nextflow.Session - [18/24b8af] Submitted process > POREC:digest_align_annotate (29) Aug-17 00:42:52.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 38; name: POREC:digest_align_annotate (29); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/24b8afb1c7e861becd77e9a4fe488f] Aug-17 00:42:52.616 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (29)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/24b8afb1c7e861becd77e9a4fe488f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:42:52.618 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:42:52.624 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:42:52.624 [Task submitter] INFO nextflow.Session - [a2/3fb8d3] Submitted process > POREC:digest_align_annotate (24) Aug-17 00:43:31.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 33; name: POREC:digest_align_annotate (24); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/3fb8d3460f1e7b9e419ab5e44d06a4] Aug-17 00:44:07.310 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 33; name: POREC:digest_align_annotate (24); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/3fb8d3460f1e7b9e419ab5e44d06a4] Aug-17 00:44:07.311 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (24)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/3fb8d3460f1e7b9e419ab5e44d06a4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:44:07.312 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:44:07.319 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:44:07.319 [Task submitter] INFO nextflow.Session - [49/0ee988] Submitted process > POREC:digest_align_annotate (43) Aug-17 00:44:08.329 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 22; name: POREC:digest_align_annotate (13); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/235f8ba02374715e0ad83e6bc215e0] ~> TaskHandler[id: 18; name: POREC:digest_align_annotate (9); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/c9a47665457ab0cb06bf3293a21de8] ~> TaskHandler[id: 25; name: POREC:digest_align_annotate (16); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/86c9839cbec196e58acfc514dcfb03] ~> TaskHandler[id: 11; name: POREC:digest_align_annotate (2); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/c5d8ca4d9229cb1f2ee8241748553f] ~> TaskHandler[id: 46; name: POREC:digest_align_annotate (37); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/cba8dd957eea721d165bf78f12724e] ~> TaskHandler[id: 51; name: POREC:digest_align_annotate (42); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/124e449aa6a29f02bacd0b8eae8ef5] ~> TaskHandler[id: 48; name: POREC:digest_align_annotate (39); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/8ce4ddc68f0da0d929a70fe7dd48a3] ~> TaskHandler[id: 49; name: POREC:digest_align_annotate (40); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/291a1dd526d195a5aa535f91def371] ~> TaskHandler[id: 53; name: POREC:digest_align_annotate (44); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/37b03214055904240e3048f55ba173] ~> TaskHandler[id: 54; name: POREC:digest_align_annotate (45); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/4eda653e07cbf98c64428a0b1871e9] .. remaining tasks omitted. Aug-17 00:45:25.703 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 52; name: POREC:digest_align_annotate (43); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/0ee988fccb727bed02eec4322ac340] Aug-17 00:45:25.704 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (43)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/0ee988fccb727bed02eec4322ac340/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:45:25.705 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:45:25.710 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:45:25.711 [Task submitter] INFO nextflow.Session - [ff/235f8b] Submitted process > POREC:digest_align_annotate (13) Aug-17 00:46:45.273 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: POREC:digest_align_annotate (13); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/235f8ba02374715e0ad83e6bc215e0] Aug-17 00:46:45.275 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (13)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/235f8ba02374715e0ad83e6bc215e0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:46:45.276 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:46:45.282 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:46:45.282 [Task submitter] INFO nextflow.Session - [d5/c9a476] Submitted process > POREC:digest_align_annotate (9) Aug-17 00:48:10.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: POREC:digest_align_annotate (9); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/c9a47665457ab0cb06bf3293a21de8] Aug-17 00:48:10.850 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (9)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/c9a47665457ab0cb06bf3293a21de8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:48:10.852 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:48:10.861 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:48:10.870 [Task submitter] INFO nextflow.Session - [e6/86c983] Submitted process > POREC:digest_align_annotate (16) Aug-17 00:48:31.373 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 25; name: POREC:digest_align_annotate (16); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/86c9839cbec196e58acfc514dcfb03] Aug-17 00:49:09.057 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 11; name: POREC:digest_align_annotate (2); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/c5d8ca4d9229cb1f2ee8241748553f] ~> TaskHandler[id: 46; name: POREC:digest_align_annotate (37); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/cba8dd957eea721d165bf78f12724e] ~> TaskHandler[id: 51; name: POREC:digest_align_annotate (42); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/124e449aa6a29f02bacd0b8eae8ef5] ~> TaskHandler[id: 48; name: POREC:digest_align_annotate (39); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/8ce4ddc68f0da0d929a70fe7dd48a3] ~> TaskHandler[id: 49; name: POREC:digest_align_annotate (40); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/291a1dd526d195a5aa535f91def371] ~> TaskHandler[id: 53; name: POREC:digest_align_annotate (44); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/37b03214055904240e3048f55ba173] ~> TaskHandler[id: 54; name: POREC:digest_align_annotate (45); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/4eda653e07cbf98c64428a0b1871e9] ~> TaskHandler[id: 56; name: POREC:digest_align_annotate (47); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/130eb66d1c8cf783cd7ae191d8ed69] ~> TaskHandler[id: 85; name: POREC:digest_align_annotate (76); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/0325b301e6c79e66b86bf16b1d2863] ~> TaskHandler[id: 57; name: POREC:digest_align_annotate (48); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/e133dd5ed622d32f093357989d9ce4] .. remaining tasks omitted. Aug-17 00:49:31.603 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 25; name: POREC:digest_align_annotate (16); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/86c9839cbec196e58acfc514dcfb03] Aug-17 00:49:31.605 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (16)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/86c9839cbec196e58acfc514dcfb03/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:49:31.606 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:49:31.609 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:49:31.610 [Task submitter] INFO nextflow.Session - [99/c5d8ca] Submitted process > POREC:digest_align_annotate (2) Aug-17 00:50:54.786 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 11; name: POREC:digest_align_annotate (2); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/c5d8ca4d9229cb1f2ee8241748553f] Aug-17 00:50:54.788 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (2)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/c5d8ca4d9229cb1f2ee8241748553f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:50:54.795 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:50:54.818 [Task submitter] INFO nextflow.Session - [06/cba8dd] Submitted process > POREC:digest_align_annotate (37) Aug-17 00:50:54.820 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:52:19.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 46; name: POREC:digest_align_annotate (37); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/cba8dd957eea721d165bf78f12724e] Aug-17 00:52:19.619 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (37)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/cba8dd957eea721d165bf78f12724e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:52:19.620 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:52:19.626 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:52:19.627 [Task submitter] INFO nextflow.Session - [ca/124e44] Submitted process > POREC:digest_align_annotate (42) Aug-17 00:53:31.423 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 51; name: POREC:digest_align_annotate (42); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/124e449aa6a29f02bacd0b8eae8ef5] Aug-17 00:53:44.070 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 51; name: POREC:digest_align_annotate (42); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/124e449aa6a29f02bacd0b8eae8ef5] Aug-17 00:53:44.071 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (42)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/124e449aa6a29f02bacd0b8eae8ef5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:53:44.073 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:53:44.078 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:53:44.078 [Task submitter] INFO nextflow.Session - [ee/8ce4dd] Submitted process > POREC:digest_align_annotate (39) Aug-17 00:54:09.166 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 49; name: POREC:digest_align_annotate (40); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/291a1dd526d195a5aa535f91def371] ~> TaskHandler[id: 53; name: POREC:digest_align_annotate (44); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/37b03214055904240e3048f55ba173] ~> TaskHandler[id: 54; name: POREC:digest_align_annotate (45); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/4eda653e07cbf98c64428a0b1871e9] ~> TaskHandler[id: 56; name: POREC:digest_align_annotate (47); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/130eb66d1c8cf783cd7ae191d8ed69] ~> TaskHandler[id: 85; name: POREC:digest_align_annotate (76); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/0325b301e6c79e66b86bf16b1d2863] ~> TaskHandler[id: 57; name: POREC:digest_align_annotate (48); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/e133dd5ed622d32f093357989d9ce4] ~> TaskHandler[id: 55; name: POREC:digest_align_annotate (46); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/234444191bcd082f9400934da1202b] ~> TaskHandler[id: 58; name: POREC:digest_align_annotate (49); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/0cb1d4c57a63a9560c13234114613d] ~> TaskHandler[id: 59; name: POREC:digest_align_annotate (50); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/17259f2a65d0817028efc9d343c96c] ~> TaskHandler[id: 62; name: POREC:digest_align_annotate (53); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9ee29da5714af222c87808c1fa9d99] .. remaining tasks omitted. Aug-17 00:55:05.775 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 48; name: POREC:digest_align_annotate (39); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/8ce4ddc68f0da0d929a70fe7dd48a3] Aug-17 00:55:05.779 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (39)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/8ce4ddc68f0da0d929a70fe7dd48a3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:55:05.781 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:55:05.786 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:55:05.786 [Task submitter] INFO nextflow.Session - [4d/291a1d] Submitted process > POREC:digest_align_annotate (40) Aug-17 00:56:29.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 49; name: POREC:digest_align_annotate (40); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/291a1dd526d195a5aa535f91def371] Aug-17 00:56:29.075 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (40)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/291a1dd526d195a5aa535f91def371/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:56:29.076 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:56:29.081 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:56:29.081 [Task submitter] INFO nextflow.Session - [ec/37b032] Submitted process > POREC:digest_align_annotate (44) Aug-17 00:57:55.186 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 53; name: POREC:digest_align_annotate (44); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/37b03214055904240e3048f55ba173] Aug-17 00:57:55.188 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (44)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/37b03214055904240e3048f55ba173/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:57:55.190 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:57:55.196 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:57:55.205 [Task submitter] INFO nextflow.Session - [39/4eda65] Submitted process > POREC:digest_align_annotate (45) Aug-17 00:58:31.435 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 54; name: POREC:digest_align_annotate (45); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/4eda653e07cbf98c64428a0b1871e9] Aug-17 00:59:09.465 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 56; name: POREC:digest_align_annotate (47); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/130eb66d1c8cf783cd7ae191d8ed69] ~> TaskHandler[id: 85; name: POREC:digest_align_annotate (76); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/0325b301e6c79e66b86bf16b1d2863] ~> TaskHandler[id: 57; name: POREC:digest_align_annotate (48); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/e133dd5ed622d32f093357989d9ce4] ~> TaskHandler[id: 55; name: POREC:digest_align_annotate (46); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/234444191bcd082f9400934da1202b] ~> TaskHandler[id: 58; name: POREC:digest_align_annotate (49); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/0cb1d4c57a63a9560c13234114613d] ~> TaskHandler[id: 59; name: POREC:digest_align_annotate (50); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/17259f2a65d0817028efc9d343c96c] ~> TaskHandler[id: 62; name: POREC:digest_align_annotate (53); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9ee29da5714af222c87808c1fa9d99] ~> TaskHandler[id: 61; name: POREC:digest_align_annotate (52); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/cc8fcc0a77a728dce4f234b525c198] ~> TaskHandler[id: 60; name: POREC:digest_align_annotate (51); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/8d8c8cd6d3edc8d7a18f8a31eb4a82] ~> TaskHandler[id: 64; name: POREC:digest_align_annotate (55); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/37d1ace7d87073f8ab53a5964dadde] .. remaining tasks omitted. Aug-17 00:59:18.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 54; name: POREC:digest_align_annotate (45); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/4eda653e07cbf98c64428a0b1871e9] Aug-17 00:59:18.048 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (45)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/4eda653e07cbf98c64428a0b1871e9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 00:59:18.050 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 00:59:18.059 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 00:59:18.059 [Task submitter] INFO nextflow.Session - [5a/130eb6] Submitted process > POREC:digest_align_annotate (47) Aug-17 01:00:34.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 56; name: POREC:digest_align_annotate (47); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/130eb66d1c8cf783cd7ae191d8ed69] Aug-17 01:00:34.354 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (47)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/130eb66d1c8cf783cd7ae191d8ed69/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:00:34.355 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:00:34.359 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:00:34.359 [Task submitter] INFO nextflow.Session - [01/0325b3] Submitted process > POREC:digest_align_annotate (76) Aug-17 01:01:58.914 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 85; name: POREC:digest_align_annotate (76); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/0325b301e6c79e66b86bf16b1d2863] Aug-17 01:01:58.940 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (76)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/0325b301e6c79e66b86bf16b1d2863/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:01:58.941 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:01:58.947 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:01:58.947 [Task submitter] INFO nextflow.Session - [da/e133dd] Submitted process > POREC:digest_align_annotate (48) Aug-17 01:03:17.631 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 57; name: POREC:digest_align_annotate (48); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/e133dd5ed622d32f093357989d9ce4] Aug-17 01:03:17.653 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (48)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/e133dd5ed622d32f093357989d9ce4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:03:17.655 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:03:17.661 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:03:17.661 [Task submitter] INFO nextflow.Session - [c1/234444] Submitted process > POREC:digest_align_annotate (46) Aug-17 01:03:31.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 55; name: POREC:digest_align_annotate (46); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/234444191bcd082f9400934da1202b] Aug-17 01:04:09.852 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 58; name: POREC:digest_align_annotate (49); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/0cb1d4c57a63a9560c13234114613d] ~> TaskHandler[id: 59; name: POREC:digest_align_annotate (50); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/17259f2a65d0817028efc9d343c96c] ~> TaskHandler[id: 62; name: POREC:digest_align_annotate (53); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9ee29da5714af222c87808c1fa9d99] ~> TaskHandler[id: 61; name: POREC:digest_align_annotate (52); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/cc8fcc0a77a728dce4f234b525c198] ~> TaskHandler[id: 60; name: POREC:digest_align_annotate (51); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/8d8c8cd6d3edc8d7a18f8a31eb4a82] ~> TaskHandler[id: 64; name: POREC:digest_align_annotate (55); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/37d1ace7d87073f8ab53a5964dadde] ~> TaskHandler[id: 63; name: POREC:digest_align_annotate (54); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/0c40484c726a50b8a0e1474e89ce2a] ~> TaskHandler[id: 65; name: POREC:digest_align_annotate (56); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e9480942990b779893b071393b0dc8] ~> TaskHandler[id: 66; name: POREC:digest_align_annotate (57); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/313119f72c46a55dc156306b15379b] ~> TaskHandler[id: 68; name: POREC:digest_align_annotate (59); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/3a828685025a684e99f8965e002912] .. remaining tasks omitted. Aug-17 01:04:35.530 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 55; name: POREC:digest_align_annotate (46); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/234444191bcd082f9400934da1202b] Aug-17 01:04:35.531 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (46)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/234444191bcd082f9400934da1202b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:04:35.532 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:04:35.538 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:04:35.538 [Task submitter] INFO nextflow.Session - [17/0cb1d4] Submitted process > POREC:digest_align_annotate (49) Aug-17 01:05:55.047 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 58; name: POREC:digest_align_annotate (49); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/0cb1d4c57a63a9560c13234114613d] Aug-17 01:05:55.048 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (49)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/0cb1d4c57a63a9560c13234114613d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:05:55.049 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:05:55.055 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:05:55.055 [Task submitter] INFO nextflow.Session - [ba/17259f] Submitted process > POREC:digest_align_annotate (50) Aug-17 01:07:11.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 59; name: POREC:digest_align_annotate (50); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/17259f2a65d0817028efc9d343c96c] Aug-17 01:07:11.333 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (50)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/17259f2a65d0817028efc9d343c96c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:07:11.339 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:07:11.345 [Task submitter] INFO nextflow.Session - [aa/9ee29d] Submitted process > POREC:digest_align_annotate (53) Aug-17 01:07:11.347 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:08:31.524 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 62; name: POREC:digest_align_annotate (53); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9ee29da5714af222c87808c1fa9d99] Aug-17 01:08:32.116 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 62; name: POREC:digest_align_annotate (53); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9ee29da5714af222c87808c1fa9d99] Aug-17 01:08:32.117 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (53)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9ee29da5714af222c87808c1fa9d99/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:08:32.119 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:08:32.123 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:08:32.124 [Task submitter] INFO nextflow.Session - [4e/cc8fcc] Submitted process > POREC:digest_align_annotate (52) Aug-17 01:09:10.246 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 60; name: POREC:digest_align_annotate (51); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/8d8c8cd6d3edc8d7a18f8a31eb4a82] ~> TaskHandler[id: 64; name: POREC:digest_align_annotate (55); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/37d1ace7d87073f8ab53a5964dadde] ~> TaskHandler[id: 63; name: POREC:digest_align_annotate (54); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/0c40484c726a50b8a0e1474e89ce2a] ~> TaskHandler[id: 65; name: POREC:digest_align_annotate (56); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e9480942990b779893b071393b0dc8] ~> TaskHandler[id: 66; name: POREC:digest_align_annotate (57); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/313119f72c46a55dc156306b15379b] ~> TaskHandler[id: 68; name: POREC:digest_align_annotate (59); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/3a828685025a684e99f8965e002912] ~> TaskHandler[id: 67; name: POREC:digest_align_annotate (58); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/ebf89cb442956e3d7ad620b2dfe05b] ~> TaskHandler[id: 70; name: POREC:digest_align_annotate (61); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/656634ead8a02297317c235d4282d9] ~> TaskHandler[id: 72; name: POREC:digest_align_annotate (63); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/30260f759135c18e45bb64cbd790cc] ~> TaskHandler[id: 69; name: POREC:digest_align_annotate (60); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/65982d7a956bde045f4ce75ed026b8] .. remaining tasks omitted. Aug-17 01:09:52.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 61; name: POREC:digest_align_annotate (52); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/cc8fcc0a77a728dce4f234b525c198] Aug-17 01:09:52.294 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (52)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/cc8fcc0a77a728dce4f234b525c198/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:09:52.295 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:09:52.335 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:09:52.336 [Task submitter] INFO nextflow.Session - [98/8d8c8c] Submitted process > POREC:digest_align_annotate (51) Aug-17 01:11:09.949 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 60; name: POREC:digest_align_annotate (51); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/8d8c8cd6d3edc8d7a18f8a31eb4a82] Aug-17 01:11:09.950 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (51)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/8d8c8cd6d3edc8d7a18f8a31eb4a82/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:11:09.952 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:11:09.993 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:11:09.993 [Task submitter] INFO nextflow.Session - [e5/37d1ac] Submitted process > POREC:digest_align_annotate (55) Aug-17 01:12:28.901 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 64; name: POREC:digest_align_annotate (55); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/37d1ace7d87073f8ab53a5964dadde] Aug-17 01:12:28.903 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (55)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/37d1ace7d87073f8ab53a5964dadde/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:12:28.904 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:12:28.957 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:12:28.957 [Task submitter] INFO nextflow.Session - [56/0c4048] Submitted process > POREC:digest_align_annotate (54) Aug-17 01:13:31.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 63; name: POREC:digest_align_annotate (54); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/0c40484c726a50b8a0e1474e89ce2a] Aug-17 01:13:47.381 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 63; name: POREC:digest_align_annotate (54); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/0c40484c726a50b8a0e1474e89ce2a] Aug-17 01:13:47.382 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (54)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/0c40484c726a50b8a0e1474e89ce2a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:13:47.384 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:13:47.411 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:13:47.411 [Task submitter] INFO nextflow.Session - [d1/e94809] Submitted process > POREC:digest_align_annotate (56) Aug-17 01:14:10.492 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 66; name: POREC:digest_align_annotate (57); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/313119f72c46a55dc156306b15379b] ~> TaskHandler[id: 68; name: POREC:digest_align_annotate (59); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/3a828685025a684e99f8965e002912] ~> TaskHandler[id: 67; name: POREC:digest_align_annotate (58); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/ebf89cb442956e3d7ad620b2dfe05b] ~> TaskHandler[id: 70; name: POREC:digest_align_annotate (61); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/656634ead8a02297317c235d4282d9] ~> TaskHandler[id: 72; name: POREC:digest_align_annotate (63); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/30260f759135c18e45bb64cbd790cc] ~> TaskHandler[id: 69; name: POREC:digest_align_annotate (60); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/65982d7a956bde045f4ce75ed026b8] ~> TaskHandler[id: 73; name: POREC:digest_align_annotate (64); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/07214a5a34912d32852edd6adf8eb4] ~> TaskHandler[id: 71; name: POREC:digest_align_annotate (62); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/8e6c7c7f75bb833b6ea3b5c863b738] ~> TaskHandler[id: 75; name: POREC:digest_align_annotate (66); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2047af54c9fdaa99625173741b7c5c] ~> TaskHandler[id: 74; name: POREC:digest_align_annotate (65); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/26d80f3b3801f5c756a4deec8be363] .. remaining tasks omitted. Aug-17 01:15:11.147 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 65; name: POREC:digest_align_annotate (56); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e9480942990b779893b071393b0dc8] Aug-17 01:15:11.148 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (56)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e9480942990b779893b071393b0dc8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:15:11.149 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:15:11.182 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:15:11.182 [Task submitter] INFO nextflow.Session - [bb/313119] Submitted process > POREC:digest_align_annotate (57) Aug-17 01:16:28.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 66; name: POREC:digest_align_annotate (57); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/313119f72c46a55dc156306b15379b] Aug-17 01:16:28.995 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (57)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/313119f72c46a55dc156306b15379b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:16:28.996 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:16:29.012 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:16:29.013 [Task submitter] INFO nextflow.Session - [5b/3a8286] Submitted process > POREC:digest_align_annotate (59) Aug-17 01:17:45.790 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 68; name: POREC:digest_align_annotate (59); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/3a828685025a684e99f8965e002912] Aug-17 01:17:45.791 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (59)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/3a828685025a684e99f8965e002912/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:17:45.792 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:17:45.824 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:17:45.824 [Task submitter] INFO nextflow.Session - [97/ebf89c] Submitted process > POREC:digest_align_annotate (58) Aug-17 01:18:31.657 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 67; name: POREC:digest_align_annotate (58); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/ebf89cb442956e3d7ad620b2dfe05b] Aug-17 01:19:03.862 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 67; name: POREC:digest_align_annotate (58); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/ebf89cb442956e3d7ad620b2dfe05b] Aug-17 01:19:03.863 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (58)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/ebf89cb442956e3d7ad620b2dfe05b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:19:03.864 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:19:03.913 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:19:03.913 [Task submitter] INFO nextflow.Session - [02/656634] Submitted process > POREC:digest_align_annotate (61) Aug-17 01:19:10.969 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 72; name: POREC:digest_align_annotate (63); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/30260f759135c18e45bb64cbd790cc] ~> TaskHandler[id: 69; name: POREC:digest_align_annotate (60); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/65982d7a956bde045f4ce75ed026b8] ~> TaskHandler[id: 73; name: POREC:digest_align_annotate (64); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/07214a5a34912d32852edd6adf8eb4] ~> TaskHandler[id: 71; name: POREC:digest_align_annotate (62); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/8e6c7c7f75bb833b6ea3b5c863b738] ~> TaskHandler[id: 75; name: POREC:digest_align_annotate (66); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2047af54c9fdaa99625173741b7c5c] ~> TaskHandler[id: 74; name: POREC:digest_align_annotate (65); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/26d80f3b3801f5c756a4deec8be363] ~> TaskHandler[id: 76; name: POREC:digest_align_annotate (67); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/244c516dad781a97bef6e282388f59] ~> TaskHandler[id: 77; name: POREC:digest_align_annotate (68); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/43d2a3c68f9bbc9f2eac74b37cc44b] ~> TaskHandler[id: 78; name: POREC:digest_align_annotate (69); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/abc53dc751fb7a300687e0750da9ed] ~> TaskHandler[id: 80; name: POREC:digest_align_annotate (71); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/15918b2b93e3a037a8d14cabe3846e] .. remaining tasks omitted. Aug-17 01:20:26.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 70; name: POREC:digest_align_annotate (61); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/656634ead8a02297317c235d4282d9] Aug-17 01:20:26.472 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (61)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/656634ead8a02297317c235d4282d9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:20:26.473 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:20:26.505 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:20:26.505 [Task submitter] INFO nextflow.Session - [cb/30260f] Submitted process > POREC:digest_align_annotate (63) Aug-17 01:21:43.369 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 72; name: POREC:digest_align_annotate (63); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/30260f759135c18e45bb64cbd790cc] Aug-17 01:21:43.370 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (63)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/30260f759135c18e45bb64cbd790cc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:21:43.371 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:21:43.395 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:21:43.396 [Task submitter] INFO nextflow.Session - [6d/65982d] Submitted process > POREC:digest_align_annotate (60) Aug-17 01:23:07.487 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 69; name: POREC:digest_align_annotate (60); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/65982d7a956bde045f4ce75ed026b8] Aug-17 01:23:07.488 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (60)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/65982d7a956bde045f4ce75ed026b8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:23:07.489 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:23:07.516 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:23:07.517 [Task submitter] INFO nextflow.Session - [d2/07214a] Submitted process > POREC:digest_align_annotate (64) Aug-17 01:23:31.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 73; name: POREC:digest_align_annotate (64); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/07214a5a34912d32852edd6adf8eb4] Aug-17 01:24:11.724 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 71; name: POREC:digest_align_annotate (62); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/8e6c7c7f75bb833b6ea3b5c863b738] ~> TaskHandler[id: 75; name: POREC:digest_align_annotate (66); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2047af54c9fdaa99625173741b7c5c] ~> TaskHandler[id: 74; name: POREC:digest_align_annotate (65); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/26d80f3b3801f5c756a4deec8be363] ~> TaskHandler[id: 76; name: POREC:digest_align_annotate (67); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/244c516dad781a97bef6e282388f59] ~> TaskHandler[id: 77; name: POREC:digest_align_annotate (68); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/43d2a3c68f9bbc9f2eac74b37cc44b] ~> TaskHandler[id: 78; name: POREC:digest_align_annotate (69); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/abc53dc751fb7a300687e0750da9ed] ~> TaskHandler[id: 80; name: POREC:digest_align_annotate (71); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/15918b2b93e3a037a8d14cabe3846e] ~> TaskHandler[id: 79; name: POREC:digest_align_annotate (70); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/db14711915b7b30465cf2ed34f4c7f] ~> TaskHandler[id: 81; name: POREC:digest_align_annotate (72); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/2766a318e547a1e04f39562dfadfa0] ~> TaskHandler[id: 83; name: POREC:digest_align_annotate (74); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/6b4d8331b7320f2afbe0e77b122bab] .. remaining tasks omitted. Aug-17 01:24:27.896 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 73; name: POREC:digest_align_annotate (64); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/07214a5a34912d32852edd6adf8eb4] Aug-17 01:24:27.898 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (64)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/07214a5a34912d32852edd6adf8eb4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:24:27.900 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:24:27.928 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:24:27.929 [Task submitter] INFO nextflow.Session - [16/8e6c7c] Submitted process > POREC:digest_align_annotate (62) Aug-17 01:25:45.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 71; name: POREC:digest_align_annotate (62); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/8e6c7c7f75bb833b6ea3b5c863b738] Aug-17 01:25:45.709 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (62)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/8e6c7c7f75bb833b6ea3b5c863b738/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:25:45.710 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:25:45.741 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:25:45.764 [Task submitter] INFO nextflow.Session - [8b/2047af] Submitted process > POREC:digest_align_annotate (66) Aug-17 01:27:04.715 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 75; name: POREC:digest_align_annotate (66); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2047af54c9fdaa99625173741b7c5c] Aug-17 01:27:04.716 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (66)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2047af54c9fdaa99625173741b7c5c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:27:04.717 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:27:04.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:27:04.778 [Task submitter] INFO nextflow.Session - [f4/26d80f] Submitted process > POREC:digest_align_annotate (65) Aug-17 01:28:24.092 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 74; name: POREC:digest_align_annotate (65); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/26d80f3b3801f5c756a4deec8be363] Aug-17 01:28:24.093 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (65)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/26d80f3b3801f5c756a4deec8be363/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:28:24.094 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:28:24.124 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:28:24.153 [Task submitter] INFO nextflow.Session - [06/244c51] Submitted process > POREC:digest_align_annotate (67) Aug-17 01:28:31.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 76; name: POREC:digest_align_annotate (67); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/244c516dad781a97bef6e282388f59] Aug-17 01:29:12.323 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 77; name: POREC:digest_align_annotate (68); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/43d2a3c68f9bbc9f2eac74b37cc44b] ~> TaskHandler[id: 78; name: POREC:digest_align_annotate (69); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/abc53dc751fb7a300687e0750da9ed] ~> TaskHandler[id: 80; name: POREC:digest_align_annotate (71); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/15918b2b93e3a037a8d14cabe3846e] ~> TaskHandler[id: 79; name: POREC:digest_align_annotate (70); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/db14711915b7b30465cf2ed34f4c7f] ~> TaskHandler[id: 81; name: POREC:digest_align_annotate (72); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/2766a318e547a1e04f39562dfadfa0] ~> TaskHandler[id: 83; name: POREC:digest_align_annotate (74); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/6b4d8331b7320f2afbe0e77b122bab] ~> TaskHandler[id: 82; name: POREC:digest_align_annotate (73); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/488d2fb1f0ce64128685a3383dd6be] ~> TaskHandler[id: 84; name: POREC:digest_align_annotate (75); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/726e77a74624eda8d302c7d94ec968] ~> TaskHandler[id: 86; name: POREC:digest_align_annotate (77); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/20ac46e3f701e19059ea3200fa59eb] ~> TaskHandler[id: 87; name: POREC:digest_align_annotate (78); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/08cb29d4cd05de94ddb9e322b3f333] .. remaining tasks omitted. Aug-17 01:29:42.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 76; name: POREC:digest_align_annotate (67); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/244c516dad781a97bef6e282388f59] Aug-17 01:29:42.069 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (67)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/244c516dad781a97bef6e282388f59/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:29:42.070 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:29:42.085 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:29:42.085 [Task submitter] INFO nextflow.Session - [b1/43d2a3] Submitted process > POREC:digest_align_annotate (68) Aug-17 01:30:59.780 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 77; name: POREC:digest_align_annotate (68); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/43d2a3c68f9bbc9f2eac74b37cc44b] Aug-17 01:30:59.781 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (68)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/43d2a3c68f9bbc9f2eac74b37cc44b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:30:59.782 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:30:59.808 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:30:59.809 [Task submitter] INFO nextflow.Session - [11/abc53d] Submitted process > POREC:digest_align_annotate (69) Aug-17 01:32:27.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 78; name: POREC:digest_align_annotate (69); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/abc53dc751fb7a300687e0750da9ed] Aug-17 01:32:27.265 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (69)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/abc53dc751fb7a300687e0750da9ed/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:32:27.288 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:32:27.291 [Task submitter] INFO nextflow.Session - [db/15918b] Submitted process > POREC:digest_align_annotate (71) Aug-17 01:32:27.293 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:33:31.853 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 80; name: POREC:digest_align_annotate (71); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/15918b2b93e3a037a8d14cabe3846e] Aug-17 01:33:59.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 80; name: POREC:digest_align_annotate (71); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/15918b2b93e3a037a8d14cabe3846e] Aug-17 01:33:59.432 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (71)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/15918b2b93e3a037a8d14cabe3846e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:33:59.434 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:33:59.452 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:33:59.452 [Task submitter] INFO nextflow.Session - [a3/db1471] Submitted process > POREC:digest_align_annotate (70) Aug-17 01:34:12.499 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 81; name: POREC:digest_align_annotate (72); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/2766a318e547a1e04f39562dfadfa0] ~> TaskHandler[id: 83; name: POREC:digest_align_annotate (74); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/6b4d8331b7320f2afbe0e77b122bab] ~> TaskHandler[id: 82; name: POREC:digest_align_annotate (73); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/488d2fb1f0ce64128685a3383dd6be] ~> TaskHandler[id: 84; name: POREC:digest_align_annotate (75); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/726e77a74624eda8d302c7d94ec968] ~> TaskHandler[id: 86; name: POREC:digest_align_annotate (77); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/20ac46e3f701e19059ea3200fa59eb] ~> TaskHandler[id: 87; name: POREC:digest_align_annotate (78); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/08cb29d4cd05de94ddb9e322b3f333] ~> TaskHandler[id: 88; name: POREC:digest_align_annotate (79); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/af35c8a2ac30e6d877cc172b5c2d59] ~> TaskHandler[id: 89; name: POREC:digest_align_annotate (80); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/b58c7adca3492a2cefda8620797cd3] ~> TaskHandler[id: 90; name: POREC:digest_align_annotate (81); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/46a155c03e71c1f04f0045f7edd3e7] ~> TaskHandler[id: 91; name: POREC:digest_align_annotate (82); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/b67e881ebdd3a1cd39676c1ef02e52] .. remaining tasks omitted. Aug-17 01:35:31.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 79; name: POREC:digest_align_annotate (70); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/db14711915b7b30465cf2ed34f4c7f] Aug-17 01:35:31.585 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (70)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/db14711915b7b30465cf2ed34f4c7f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:35:31.586 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:35:31.615 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:35:31.615 [Task submitter] INFO nextflow.Session - [24/2766a3] Submitted process > POREC:digest_align_annotate (72) Aug-17 01:37:06.319 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 81; name: POREC:digest_align_annotate (72); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/2766a318e547a1e04f39562dfadfa0] Aug-17 01:37:06.321 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (72)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/2766a318e547a1e04f39562dfadfa0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:37:06.323 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:37:06.343 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:37:06.344 [Task submitter] INFO nextflow.Session - [54/6b4d83] Submitted process > POREC:digest_align_annotate (74) Aug-17 01:38:30.071 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 83; name: POREC:digest_align_annotate (74); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/6b4d8331b7320f2afbe0e77b122bab] Aug-17 01:38:30.072 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (74)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/6b4d8331b7320f2afbe0e77b122bab/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:38:30.074 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:38:30.080 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:38:30.080 [Task submitter] INFO nextflow.Session - [41/488d2f] Submitted process > POREC:digest_align_annotate (73) Aug-17 01:38:31.870 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 82; name: POREC:digest_align_annotate (73); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/488d2fb1f0ce64128685a3383dd6be] Aug-17 01:39:13.222 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 84; name: POREC:digest_align_annotate (75); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/726e77a74624eda8d302c7d94ec968] ~> TaskHandler[id: 86; name: POREC:digest_align_annotate (77); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/20ac46e3f701e19059ea3200fa59eb] ~> TaskHandler[id: 87; name: POREC:digest_align_annotate (78); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/08cb29d4cd05de94ddb9e322b3f333] ~> TaskHandler[id: 88; name: POREC:digest_align_annotate (79); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/af35c8a2ac30e6d877cc172b5c2d59] ~> TaskHandler[id: 89; name: POREC:digest_align_annotate (80); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/b58c7adca3492a2cefda8620797cd3] ~> TaskHandler[id: 90; name: POREC:digest_align_annotate (81); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/46a155c03e71c1f04f0045f7edd3e7] ~> TaskHandler[id: 91; name: POREC:digest_align_annotate (82); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/b67e881ebdd3a1cd39676c1ef02e52] ~> TaskHandler[id: 92; name: POREC:digest_align_annotate (83); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e40e399e76b73957ba360a2804b45e] ~> TaskHandler[id: 93; name: POREC:digest_align_annotate (84); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/58fa1986def35bbbe98c87b7622dc1] ~> TaskHandler[id: 94; name: POREC:digest_align_annotate (85); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/056ca0e7b38c96146ab97bab9cce90] .. remaining tasks omitted. Aug-17 01:40:02.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 82; name: POREC:digest_align_annotate (73); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/488d2fb1f0ce64128685a3383dd6be] Aug-17 01:40:02.588 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (73)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/488d2fb1f0ce64128685a3383dd6be/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:40:02.590 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:40:02.607 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:40:02.608 [Task submitter] INFO nextflow.Session - [2b/726e77] Submitted process > POREC:digest_align_annotate (75) Aug-17 01:41:32.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 84; name: POREC:digest_align_annotate (75); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/726e77a74624eda8d302c7d94ec968] Aug-17 01:41:32.378 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (75)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/726e77a74624eda8d302c7d94ec968/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:41:32.379 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:41:32.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:41:32.445 [Task submitter] INFO nextflow.Session - [0d/20ac46] Submitted process > POREC:digest_align_annotate (77) Aug-17 01:43:08.880 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 86; name: POREC:digest_align_annotate (77); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/20ac46e3f701e19059ea3200fa59eb] Aug-17 01:43:08.910 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (77)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/20ac46e3f701e19059ea3200fa59eb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:43:08.911 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:43:08.966 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:43:08.966 [Task submitter] INFO nextflow.Session - [4e/08cb29] Submitted process > POREC:digest_align_annotate (78) Aug-17 01:43:31.902 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 87; name: POREC:digest_align_annotate (78); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/08cb29d4cd05de94ddb9e322b3f333] Aug-17 01:44:14.176 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 88; name: POREC:digest_align_annotate (79); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/af35c8a2ac30e6d877cc172b5c2d59] ~> TaskHandler[id: 89; name: POREC:digest_align_annotate (80); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/b58c7adca3492a2cefda8620797cd3] ~> TaskHandler[id: 90; name: POREC:digest_align_annotate (81); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/46a155c03e71c1f04f0045f7edd3e7] ~> TaskHandler[id: 91; name: POREC:digest_align_annotate (82); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/b67e881ebdd3a1cd39676c1ef02e52] ~> TaskHandler[id: 92; name: POREC:digest_align_annotate (83); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e40e399e76b73957ba360a2804b45e] ~> TaskHandler[id: 93; name: POREC:digest_align_annotate (84); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/58fa1986def35bbbe98c87b7622dc1] ~> TaskHandler[id: 94; name: POREC:digest_align_annotate (85); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/056ca0e7b38c96146ab97bab9cce90] ~> TaskHandler[id: 95; name: POREC:digest_align_annotate (86); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/82e54992aea95be35a5dd6bda7fbbf] ~> TaskHandler[id: 96; name: POREC:digest_align_annotate (87); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/a5436af85f7975bfa406180eb0730c] ~> TaskHandler[id: 97; name: POREC:digest_align_annotate (88); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/1749f712c00a932e69146ae3c2c901] .. remaining tasks omitted. Aug-17 01:44:34.294 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 87; name: POREC:digest_align_annotate (78); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/08cb29d4cd05de94ddb9e322b3f333] Aug-17 01:44:34.295 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (78)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/08cb29d4cd05de94ddb9e322b3f333/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:44:34.296 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:44:34.317 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:44:34.318 [Task submitter] INFO nextflow.Session - [34/af35c8] Submitted process > POREC:digest_align_annotate (79) Aug-17 01:46:06.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 88; name: POREC:digest_align_annotate (79); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/af35c8a2ac30e6d877cc172b5c2d59] Aug-17 01:46:06.779 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (79)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/af35c8a2ac30e6d877cc172b5c2d59/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:46:06.780 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:46:06.817 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:46:06.817 [Task submitter] INFO nextflow.Session - [2a/b58c7a] Submitted process > POREC:digest_align_annotate (80) Aug-17 01:47:25.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 89; name: POREC:digest_align_annotate (80); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/b58c7adca3492a2cefda8620797cd3] Aug-17 01:47:25.562 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (80)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/b58c7adca3492a2cefda8620797cd3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:47:25.563 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:47:25.597 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:47:25.597 [Task submitter] INFO nextflow.Session - [e3/46a155] Submitted process > POREC:digest_align_annotate (81) Aug-17 01:48:31.928 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 90; name: POREC:digest_align_annotate (81); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/46a155c03e71c1f04f0045f7edd3e7] Aug-17 01:49:02.991 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 90; name: POREC:digest_align_annotate (81); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/46a155c03e71c1f04f0045f7edd3e7] Aug-17 01:49:02.993 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (81)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/46a155c03e71c1f04f0045f7edd3e7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:49:02.995 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:49:03.052 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:49:03.053 [Task submitter] INFO nextflow.Session - [47/b67e88] Submitted process > POREC:digest_align_annotate (82) Aug-17 01:49:15.097 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 92; name: POREC:digest_align_annotate (83); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e40e399e76b73957ba360a2804b45e] ~> TaskHandler[id: 93; name: POREC:digest_align_annotate (84); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/58fa1986def35bbbe98c87b7622dc1] ~> TaskHandler[id: 94; name: POREC:digest_align_annotate (85); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/056ca0e7b38c96146ab97bab9cce90] ~> TaskHandler[id: 95; name: POREC:digest_align_annotate (86); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/82e54992aea95be35a5dd6bda7fbbf] ~> TaskHandler[id: 96; name: POREC:digest_align_annotate (87); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/a5436af85f7975bfa406180eb0730c] ~> TaskHandler[id: 97; name: POREC:digest_align_annotate (88); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/1749f712c00a932e69146ae3c2c901] ~> TaskHandler[id: 98; name: POREC:digest_align_annotate (89); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/fdd00b8cdcba4b857a3bc65bfb9bb1] ~> TaskHandler[id: 99; name: POREC:digest_align_annotate (90); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/feefd29f1b99d3cd7d1160e8913441] ~> TaskHandler[id: 100; name: POREC:digest_align_annotate (91); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/a2c93c277d4d0ebd1641f71dfbee03] ~> TaskHandler[id: 102; name: POREC:digest_align_annotate (93); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/522292a35fa267fefe5b4c7b3b3c07] .. remaining tasks omitted. Aug-17 01:50:41.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 91; name: POREC:digest_align_annotate (82); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/b67e881ebdd3a1cd39676c1ef02e52] Aug-17 01:50:41.795 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (82)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/b67e881ebdd3a1cd39676c1ef02e52/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:50:41.796 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:50:41.813 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:50:41.813 [Task submitter] INFO nextflow.Session - [6f/e40e39] Submitted process > POREC:digest_align_annotate (83) Aug-17 01:51:59.757 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 92; name: POREC:digest_align_annotate (83); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e40e399e76b73957ba360a2804b45e] Aug-17 01:51:59.759 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (83)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e40e399e76b73957ba360a2804b45e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:51:59.760 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:51:59.788 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:51:59.788 [Task submitter] INFO nextflow.Session - [19/58fa19] Submitted process > POREC:digest_align_annotate (84) Aug-17 01:53:17.686 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 93; name: POREC:digest_align_annotate (84); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/58fa1986def35bbbe98c87b7622dc1] Aug-17 01:53:17.687 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (84)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/58fa1986def35bbbe98c87b7622dc1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:53:17.688 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:53:17.693 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:53:17.693 [Task submitter] INFO nextflow.Session - [d5/056ca0] Submitted process > POREC:digest_align_annotate (85) Aug-17 01:53:32.009 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 94; name: POREC:digest_align_annotate (85); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/056ca0e7b38c96146ab97bab9cce90] Aug-17 01:54:15.886 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 95; name: POREC:digest_align_annotate (86); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/82e54992aea95be35a5dd6bda7fbbf] ~> TaskHandler[id: 96; name: POREC:digest_align_annotate (87); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/a5436af85f7975bfa406180eb0730c] ~> TaskHandler[id: 97; name: POREC:digest_align_annotate (88); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/1749f712c00a932e69146ae3c2c901] ~> TaskHandler[id: 98; name: POREC:digest_align_annotate (89); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/fdd00b8cdcba4b857a3bc65bfb9bb1] ~> TaskHandler[id: 99; name: POREC:digest_align_annotate (90); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/feefd29f1b99d3cd7d1160e8913441] ~> TaskHandler[id: 100; name: POREC:digest_align_annotate (91); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/a2c93c277d4d0ebd1641f71dfbee03] ~> TaskHandler[id: 102; name: POREC:digest_align_annotate (93); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/522292a35fa267fefe5b4c7b3b3c07] ~> TaskHandler[id: 101; name: POREC:digest_align_annotate (92); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/1ac0fe1296e0e4c9073f61bddd54da] ~> TaskHandler[id: 103; name: POREC:digest_align_annotate (94); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/6e2e3ccdcd97d20b40ad74e8638de5] ~> TaskHandler[id: 104; name: POREC:digest_align_annotate (95); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/16527a12aadcaa27715849f7e2474f] .. remaining tasks omitted. Aug-17 01:54:36.565 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 94; name: POREC:digest_align_annotate (85); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/056ca0e7b38c96146ab97bab9cce90] Aug-17 01:54:36.567 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (85)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/056ca0e7b38c96146ab97bab9cce90/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:54:36.569 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:54:36.592 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:54:36.592 [Task submitter] INFO nextflow.Session - [5d/82e549] Submitted process > POREC:digest_align_annotate (86) Aug-17 01:55:54.957 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 95; name: POREC:digest_align_annotate (86); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/82e54992aea95be35a5dd6bda7fbbf] Aug-17 01:55:54.958 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (86)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/82e54992aea95be35a5dd6bda7fbbf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:55:54.960 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:55:54.976 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:55:54.976 [Task submitter] INFO nextflow.Session - [60/a5436a] Submitted process > POREC:digest_align_annotate (87) Aug-17 01:57:11.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 96; name: POREC:digest_align_annotate (87); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/a5436af85f7975bfa406180eb0730c] Aug-17 01:57:11.544 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (87)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/a5436af85f7975bfa406180eb0730c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:57:11.545 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:57:11.570 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:57:11.570 [Task submitter] INFO nextflow.Session - [a2/1749f7] Submitted process > POREC:digest_align_annotate (88) Aug-17 01:58:31.524 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 97; name: POREC:digest_align_annotate (88); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/1749f712c00a932e69146ae3c2c901] Aug-17 01:58:31.525 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (88)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/1749f712c00a932e69146ae3c2c901/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:58:31.526 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:58:31.553 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:58:31.553 [Task submitter] INFO nextflow.Session - [50/fdd00b] Submitted process > POREC:digest_align_annotate (89) Aug-17 01:58:32.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 98; name: POREC:digest_align_annotate (89); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/fdd00b8cdcba4b857a3bc65bfb9bb1] Aug-17 01:59:16.697 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 99; name: POREC:digest_align_annotate (90); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/feefd29f1b99d3cd7d1160e8913441] ~> TaskHandler[id: 100; name: POREC:digest_align_annotate (91); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/a2c93c277d4d0ebd1641f71dfbee03] ~> TaskHandler[id: 102; name: POREC:digest_align_annotate (93); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/522292a35fa267fefe5b4c7b3b3c07] ~> TaskHandler[id: 101; name: POREC:digest_align_annotate (92); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/1ac0fe1296e0e4c9073f61bddd54da] ~> TaskHandler[id: 103; name: POREC:digest_align_annotate (94); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/6e2e3ccdcd97d20b40ad74e8638de5] ~> TaskHandler[id: 104; name: POREC:digest_align_annotate (95); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/16527a12aadcaa27715849f7e2474f] ~> TaskHandler[id: 106; name: POREC:digest_align_annotate (97); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/1f96f13e2bb6ee4e18b9f3b456db38] ~> TaskHandler[id: 108; name: POREC:digest_align_annotate (99); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/cda79d84107d706efdeee53209997a] ~> TaskHandler[id: 109; name: POREC:digest_align_annotate (100); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/04f5ba5295f2650b571f5c87fbf2dc] ~> TaskHandler[id: 105; name: POREC:digest_align_annotate (96); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/38dd9abe14ae9bf2bfbf5f8681fecb] .. remaining tasks omitted. Aug-17 01:59:49.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 98; name: POREC:digest_align_annotate (89); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/fdd00b8cdcba4b857a3bc65bfb9bb1] Aug-17 01:59:49.336 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (89)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/fdd00b8cdcba4b857a3bc65bfb9bb1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 01:59:49.338 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 01:59:49.384 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 01:59:49.385 [Task submitter] INFO nextflow.Session - [a6/feefd2] Submitted process > POREC:digest_align_annotate (90) Aug-17 02:01:06.238 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 99; name: POREC:digest_align_annotate (90); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/feefd29f1b99d3cd7d1160e8913441] Aug-17 02:01:06.239 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (90)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/feefd29f1b99d3cd7d1160e8913441/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:01:06.240 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:01:06.254 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:01:06.262 [Task submitter] INFO nextflow.Session - [56/a2c93c] Submitted process > POREC:digest_align_annotate (91) Aug-17 02:02:25.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 100; name: POREC:digest_align_annotate (91); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/a2c93c277d4d0ebd1641f71dfbee03] Aug-17 02:02:25.469 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (91)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/a2c93c277d4d0ebd1641f71dfbee03/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:02:25.470 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:02:25.491 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:02:25.491 [Task submitter] INFO nextflow.Session - [d1/522292] Submitted process > POREC:digest_align_annotate (93) Aug-17 02:03:32.034 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 102; name: POREC:digest_align_annotate (93); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/522292a35fa267fefe5b4c7b3b3c07] Aug-17 02:03:45.622 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 102; name: POREC:digest_align_annotate (93); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/522292a35fa267fefe5b4c7b3b3c07] Aug-17 02:03:45.624 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (93)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/522292a35fa267fefe5b4c7b3b3c07/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:03:45.625 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:03:45.668 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:03:45.668 [Task submitter] INFO nextflow.Session - [50/1ac0fe] Submitted process > POREC:digest_align_annotate (92) Aug-17 02:04:16.773 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 103; name: POREC:digest_align_annotate (94); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/6e2e3ccdcd97d20b40ad74e8638de5] ~> TaskHandler[id: 104; name: POREC:digest_align_annotate (95); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/16527a12aadcaa27715849f7e2474f] ~> TaskHandler[id: 106; name: POREC:digest_align_annotate (97); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/1f96f13e2bb6ee4e18b9f3b456db38] ~> TaskHandler[id: 108; name: POREC:digest_align_annotate (99); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/cda79d84107d706efdeee53209997a] ~> TaskHandler[id: 109; name: POREC:digest_align_annotate (100); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/04f5ba5295f2650b571f5c87fbf2dc] ~> TaskHandler[id: 105; name: POREC:digest_align_annotate (96); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/38dd9abe14ae9bf2bfbf5f8681fecb] ~> TaskHandler[id: 107; name: POREC:digest_align_annotate (98); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/3f02a27d684334fea708dd201c08af] ~> TaskHandler[id: 110; name: POREC:digest_align_annotate (101); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/c7a7fa784ed19278dfb7338cd70bca] ~> TaskHandler[id: 112; name: POREC:digest_align_annotate (103); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9e30bfb363ffb19d5c651379ef8e98] ~> TaskHandler[id: 111; name: POREC:digest_align_annotate (102); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/761621bc1c174b0167632f37f29bc7] .. remaining tasks omitted. Aug-17 02:05:07.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 101; name: POREC:digest_align_annotate (92); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/1ac0fe1296e0e4c9073f61bddd54da] Aug-17 02:05:07.742 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (92)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/1ac0fe1296e0e4c9073f61bddd54da/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:05:07.743 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:05:07.784 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:05:07.811 [Task submitter] INFO nextflow.Session - [67/6e2e3c] Submitted process > POREC:digest_align_annotate (94) Aug-17 02:06:30.072 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 103; name: POREC:digest_align_annotate (94); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/6e2e3ccdcd97d20b40ad74e8638de5] Aug-17 02:06:30.073 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (94)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/6e2e3ccdcd97d20b40ad74e8638de5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:06:30.075 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:06:30.086 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:06:30.086 [Task submitter] INFO nextflow.Session - [89/a0cca4] Submitted process > POREC:digest_align_annotate (648) Aug-17 02:07:54.798 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 657; name: POREC:digest_align_annotate (648); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/a0cca49fe989fcc2b9ee23f93108ca] Aug-17 02:07:54.800 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (648)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/a0cca49fe989fcc2b9ee23f93108ca/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:07:54.802 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:07:54.836 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:07:54.836 [Task submitter] INFO nextflow.Session - [40/16527a] Submitted process > POREC:digest_align_annotate (95) Aug-17 02:08:32.036 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 104; name: POREC:digest_align_annotate (95); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/16527a12aadcaa27715849f7e2474f] Aug-17 02:09:13.620 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 104; name: POREC:digest_align_annotate (95); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/16527a12aadcaa27715849f7e2474f] Aug-17 02:09:13.621 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (95)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/16527a12aadcaa27715849f7e2474f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:09:13.622 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:09:13.631 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:09:13.631 [Task submitter] INFO nextflow.Session - [61/1f96f1] Submitted process > POREC:digest_align_annotate (97) Aug-17 02:09:17.648 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 108; name: POREC:digest_align_annotate (99); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/cda79d84107d706efdeee53209997a] ~> TaskHandler[id: 109; name: POREC:digest_align_annotate (100); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/04f5ba5295f2650b571f5c87fbf2dc] ~> TaskHandler[id: 105; name: POREC:digest_align_annotate (96); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/38dd9abe14ae9bf2bfbf5f8681fecb] ~> TaskHandler[id: 107; name: POREC:digest_align_annotate (98); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/3f02a27d684334fea708dd201c08af] ~> TaskHandler[id: 110; name: POREC:digest_align_annotate (101); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/c7a7fa784ed19278dfb7338cd70bca] ~> TaskHandler[id: 112; name: POREC:digest_align_annotate (103); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9e30bfb363ffb19d5c651379ef8e98] ~> TaskHandler[id: 111; name: POREC:digest_align_annotate (102); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/761621bc1c174b0167632f37f29bc7] ~> TaskHandler[id: 113; name: POREC:digest_align_annotate (104); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/326a6c72d04dd514a03ce81db32375] ~> TaskHandler[id: 114; name: POREC:digest_align_annotate (105); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/be3720b8040bc7f98a5983d6f29a9a] ~> TaskHandler[id: 115; name: POREC:digest_align_annotate (106); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/b7b8e3bd9c60f5a21959e5e085c1e9] .. remaining tasks omitted. Aug-17 02:10:31.879 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 106; name: POREC:digest_align_annotate (97); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/1f96f13e2bb6ee4e18b9f3b456db38] Aug-17 02:10:31.880 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (97)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/1f96f13e2bb6ee4e18b9f3b456db38/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:10:31.901 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:10:31.923 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:10:31.924 [Task submitter] INFO nextflow.Session - [a9/a8d705] Submitted process > POREC:digest_align_annotate (840) Aug-17 02:11:45.610 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 849; name: POREC:digest_align_annotate (840); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/a8d705e80eb599e99d1d4b442b570d] Aug-17 02:11:45.612 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (840)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/a8d705e80eb599e99d1d4b442b570d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:11:45.614 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:11:45.633 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:11:45.633 [Task submitter] INFO nextflow.Session - [22/cda79d] Submitted process > POREC:digest_align_annotate (99) Aug-17 02:13:03.234 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 108; name: POREC:digest_align_annotate (99); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/cda79d84107d706efdeee53209997a] Aug-17 02:13:03.235 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (99)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/cda79d84107d706efdeee53209997a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:13:03.236 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:13:03.261 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:13:03.261 [Task submitter] INFO nextflow.Session - [4a/04f5ba] Submitted process > POREC:digest_align_annotate (100) Aug-17 02:13:32.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 109; name: POREC:digest_align_annotate (100); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/04f5ba5295f2650b571f5c87fbf2dc] Aug-17 02:14:18.505 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 105; name: POREC:digest_align_annotate (96); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/38dd9abe14ae9bf2bfbf5f8681fecb] ~> TaskHandler[id: 107; name: POREC:digest_align_annotate (98); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/3f02a27d684334fea708dd201c08af] ~> TaskHandler[id: 110; name: POREC:digest_align_annotate (101); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/c7a7fa784ed19278dfb7338cd70bca] ~> TaskHandler[id: 112; name: POREC:digest_align_annotate (103); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9e30bfb363ffb19d5c651379ef8e98] ~> TaskHandler[id: 111; name: POREC:digest_align_annotate (102); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/761621bc1c174b0167632f37f29bc7] ~> TaskHandler[id: 113; name: POREC:digest_align_annotate (104); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/326a6c72d04dd514a03ce81db32375] ~> TaskHandler[id: 114; name: POREC:digest_align_annotate (105); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/be3720b8040bc7f98a5983d6f29a9a] ~> TaskHandler[id: 115; name: POREC:digest_align_annotate (106); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/b7b8e3bd9c60f5a21959e5e085c1e9] ~> TaskHandler[id: 117; name: POREC:digest_align_annotate (108); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/e17599a027fcba68b426d428b459f9] ~> TaskHandler[id: 116; name: POREC:digest_align_annotate (107); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/5724bfbaef05417ab7e3363d6a26b4] .. remaining tasks omitted. Aug-17 02:14:27.356 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 109; name: POREC:digest_align_annotate (100); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/04f5ba5295f2650b571f5c87fbf2dc] Aug-17 02:14:27.357 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (100)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/04f5ba5295f2650b571f5c87fbf2dc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:14:27.359 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:14:27.416 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:14:27.417 [Task submitter] INFO nextflow.Session - [7f/38dd9a] Submitted process > POREC:digest_align_annotate (96) Aug-17 02:15:48.533 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 105; name: POREC:digest_align_annotate (96); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/38dd9abe14ae9bf2bfbf5f8681fecb] Aug-17 02:15:48.534 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (96)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/38dd9abe14ae9bf2bfbf5f8681fecb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:15:48.535 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:15:48.604 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:15:48.605 [Task submitter] INFO nextflow.Session - [35/3f02a2] Submitted process > POREC:digest_align_annotate (98) Aug-17 02:17:10.982 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 107; name: POREC:digest_align_annotate (98); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/3f02a27d684334fea708dd201c08af] Aug-17 02:17:10.983 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (98)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/3f02a27d684334fea708dd201c08af/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:17:10.984 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:17:11.006 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:17:11.041 [Task submitter] INFO nextflow.Session - [1f/c7a7fa] Submitted process > POREC:digest_align_annotate (101) Aug-17 02:18:30.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 110; name: POREC:digest_align_annotate (101); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/c7a7fa784ed19278dfb7338cd70bca] Aug-17 02:18:30.193 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (101)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/c7a7fa784ed19278dfb7338cd70bca/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:18:30.194 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:18:30.228 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:18:30.228 [Task submitter] INFO nextflow.Session - [35/9e30bf] Submitted process > POREC:digest_align_annotate (103) Aug-17 02:18:32.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 112; name: POREC:digest_align_annotate (103); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9e30bfb363ffb19d5c651379ef8e98] Aug-17 02:19:19.388 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 111; name: POREC:digest_align_annotate (102); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/761621bc1c174b0167632f37f29bc7] ~> TaskHandler[id: 113; name: POREC:digest_align_annotate (104); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/326a6c72d04dd514a03ce81db32375] ~> TaskHandler[id: 114; name: POREC:digest_align_annotate (105); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/be3720b8040bc7f98a5983d6f29a9a] ~> TaskHandler[id: 115; name: POREC:digest_align_annotate (106); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/b7b8e3bd9c60f5a21959e5e085c1e9] ~> TaskHandler[id: 117; name: POREC:digest_align_annotate (108); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/e17599a027fcba68b426d428b459f9] ~> TaskHandler[id: 116; name: POREC:digest_align_annotate (107); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/5724bfbaef05417ab7e3363d6a26b4] ~> TaskHandler[id: 119; name: POREC:digest_align_annotate (110); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/1987a8e9e5ff818b0bdef0c1a66d3c] ~> TaskHandler[id: 118; name: POREC:digest_align_annotate (109); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/302ac5e5ffdd01ba3db6ae32da6221] ~> TaskHandler[id: 121; name: POREC:digest_align_annotate (112); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/389d5bc8d46a03734c9e8f5dd9309f] ~> TaskHandler[id: 122; name: POREC:digest_align_annotate (113); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80636533af207b40329458ffcfb639] .. remaining tasks omitted. Aug-17 02:20:21.459 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 112; name: POREC:digest_align_annotate (103); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9e30bfb363ffb19d5c651379ef8e98] Aug-17 02:20:21.527 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (103)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9e30bfb363ffb19d5c651379ef8e98/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:20:21.529 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:20:21.552 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:20:21.552 [Task submitter] INFO nextflow.Session - [a2/761621] Submitted process > POREC:digest_align_annotate (102) Aug-17 02:21:51.497 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 111; name: POREC:digest_align_annotate (102); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/761621bc1c174b0167632f37f29bc7] Aug-17 02:21:51.499 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (102)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/761621bc1c174b0167632f37f29bc7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:21:51.501 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:21:51.519 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:21:51.519 [Task submitter] INFO nextflow.Session - [16/326a6c] Submitted process > POREC:digest_align_annotate (104) Aug-17 02:23:15.943 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 113; name: POREC:digest_align_annotate (104); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/326a6c72d04dd514a03ce81db32375] Aug-17 02:23:15.943 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (104)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/326a6c72d04dd514a03ce81db32375/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:23:15.944 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:23:16.000 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:23:16.000 [Task submitter] INFO nextflow.Session - [36/be3720] Submitted process > POREC:digest_align_annotate (105) Aug-17 02:23:32.172 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 114; name: POREC:digest_align_annotate (105); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/be3720b8040bc7f98a5983d6f29a9a] Aug-17 02:24:20.209 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 115; name: POREC:digest_align_annotate (106); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/b7b8e3bd9c60f5a21959e5e085c1e9] ~> TaskHandler[id: 117; name: POREC:digest_align_annotate (108); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/e17599a027fcba68b426d428b459f9] ~> TaskHandler[id: 116; name: POREC:digest_align_annotate (107); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/5724bfbaef05417ab7e3363d6a26b4] ~> TaskHandler[id: 119; name: POREC:digest_align_annotate (110); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/1987a8e9e5ff818b0bdef0c1a66d3c] ~> TaskHandler[id: 118; name: POREC:digest_align_annotate (109); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/302ac5e5ffdd01ba3db6ae32da6221] ~> TaskHandler[id: 121; name: POREC:digest_align_annotate (112); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/389d5bc8d46a03734c9e8f5dd9309f] ~> TaskHandler[id: 122; name: POREC:digest_align_annotate (113); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80636533af207b40329458ffcfb639] ~> TaskHandler[id: 123; name: POREC:digest_align_annotate (114); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/dc0c3d09816b542292897d48770765] ~> TaskHandler[id: 120; name: POREC:digest_align_annotate (111); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/ab40cc84de8423c0fb8e209f91cffb] ~> TaskHandler[id: 124; name: POREC:digest_align_annotate (115); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/deb5da07f6e54dfc0287efb7568743] .. remaining tasks omitted. Aug-17 02:24:49.873 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 114; name: POREC:digest_align_annotate (105); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/be3720b8040bc7f98a5983d6f29a9a] Aug-17 02:24:49.874 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (105)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/be3720b8040bc7f98a5983d6f29a9a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:24:49.875 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:24:49.907 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:24:49.907 [Task submitter] INFO nextflow.Session - [ed/b7b8e3] Submitted process > POREC:digest_align_annotate (106) Aug-17 02:26:13.892 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 115; name: POREC:digest_align_annotate (106); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/b7b8e3bd9c60f5a21959e5e085c1e9] Aug-17 02:26:13.893 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (106)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/b7b8e3bd9c60f5a21959e5e085c1e9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:26:13.894 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:26:13.919 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:26:13.919 [Task submitter] INFO nextflow.Session - [73/e17599] Submitted process > POREC:digest_align_annotate (108) Aug-17 02:27:45.399 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 117; name: POREC:digest_align_annotate (108); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/e17599a027fcba68b426d428b459f9] Aug-17 02:27:45.402 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (108)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/e17599a027fcba68b426d428b459f9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:27:45.420 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:27:45.446 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:27:45.447 [Task submitter] INFO nextflow.Session - [47/5724bf] Submitted process > POREC:digest_align_annotate (107) Aug-17 02:28:32.260 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 116; name: POREC:digest_align_annotate (107); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/5724bfbaef05417ab7e3363d6a26b4] Aug-17 02:29:18.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 116; name: POREC:digest_align_annotate (107); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/5724bfbaef05417ab7e3363d6a26b4] Aug-17 02:29:18.711 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (107)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/5724bfbaef05417ab7e3363d6a26b4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:29:18.712 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:29:18.773 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:29:18.773 [Task submitter] INFO nextflow.Session - [cf/1987a8] Submitted process > POREC:digest_align_annotate (110) Aug-17 02:29:20.808 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 118; name: POREC:digest_align_annotate (109); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/302ac5e5ffdd01ba3db6ae32da6221] ~> TaskHandler[id: 121; name: POREC:digest_align_annotate (112); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/389d5bc8d46a03734c9e8f5dd9309f] ~> TaskHandler[id: 122; name: POREC:digest_align_annotate (113); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80636533af207b40329458ffcfb639] ~> TaskHandler[id: 123; name: POREC:digest_align_annotate (114); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/dc0c3d09816b542292897d48770765] ~> TaskHandler[id: 120; name: POREC:digest_align_annotate (111); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/ab40cc84de8423c0fb8e209f91cffb] ~> TaskHandler[id: 124; name: POREC:digest_align_annotate (115); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/deb5da07f6e54dfc0287efb7568743] ~> TaskHandler[id: 126; name: POREC:digest_align_annotate (117); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/56c80c7f13af68bd8bb931796cd9fb] ~> TaskHandler[id: 125; name: POREC:digest_align_annotate (116); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7d5e3d2d30741d2b960ef9a8ac3a6c] ~> TaskHandler[id: 154; name: POREC:digest_align_annotate (145); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/1d702dca62a87e16bb2361ef8f70f8] ~> TaskHandler[id: 128; name: POREC:digest_align_annotate (119); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/9659715a4c3392baafe8c95ed75733] .. remaining tasks omitted. Aug-17 02:30:53.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 119; name: POREC:digest_align_annotate (110); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/1987a8e9e5ff818b0bdef0c1a66d3c] Aug-17 02:30:53.389 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (110)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/1987a8e9e5ff818b0bdef0c1a66d3c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:30:53.390 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:30:53.418 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:30:53.418 [Task submitter] INFO nextflow.Session - [c5/302ac5] Submitted process > POREC:digest_align_annotate (109) Aug-17 02:32:21.666 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 118; name: POREC:digest_align_annotate (109); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/302ac5e5ffdd01ba3db6ae32da6221] Aug-17 02:32:21.667 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (109)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/302ac5e5ffdd01ba3db6ae32da6221/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:32:21.668 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:32:21.708 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:32:21.708 [Task submitter] INFO nextflow.Session - [e3/389d5b] Submitted process > POREC:digest_align_annotate (112) Aug-17 02:33:32.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 121; name: POREC:digest_align_annotate (112); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/389d5bc8d46a03734c9e8f5dd9309f] Aug-17 02:33:49.226 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 121; name: POREC:digest_align_annotate (112); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/389d5bc8d46a03734c9e8f5dd9309f] Aug-17 02:33:49.227 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (112)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/389d5bc8d46a03734c9e8f5dd9309f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:33:49.228 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:33:49.283 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:33:49.283 [Task submitter] INFO nextflow.Session - [91/806365] Submitted process > POREC:digest_align_annotate (113) Aug-17 02:34:21.391 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 123; name: POREC:digest_align_annotate (114); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/dc0c3d09816b542292897d48770765] ~> TaskHandler[id: 120; name: POREC:digest_align_annotate (111); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/ab40cc84de8423c0fb8e209f91cffb] ~> TaskHandler[id: 124; name: POREC:digest_align_annotate (115); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/deb5da07f6e54dfc0287efb7568743] ~> TaskHandler[id: 126; name: POREC:digest_align_annotate (117); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/56c80c7f13af68bd8bb931796cd9fb] ~> TaskHandler[id: 125; name: POREC:digest_align_annotate (116); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7d5e3d2d30741d2b960ef9a8ac3a6c] ~> TaskHandler[id: 154; name: POREC:digest_align_annotate (145); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/1d702dca62a87e16bb2361ef8f70f8] ~> TaskHandler[id: 128; name: POREC:digest_align_annotate (119); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/9659715a4c3392baafe8c95ed75733] ~> TaskHandler[id: 127; name: POREC:digest_align_annotate (118); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/798117e6998c6b8be4eeb80b575e35] ~> TaskHandler[id: 130; name: POREC:digest_align_annotate (121); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/cf402ea28cde87f1c7bb3d201d6461] ~> TaskHandler[id: 129; name: POREC:digest_align_annotate (120); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4dd836835dd5648b5c91125661fbe8] .. remaining tasks omitted. Aug-17 02:35:20.002 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 122; name: POREC:digest_align_annotate (113); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80636533af207b40329458ffcfb639] Aug-17 02:35:20.003 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (113)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80636533af207b40329458ffcfb639/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:35:20.004 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:35:20.049 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:35:20.049 [Task submitter] INFO nextflow.Session - [8b/dc0c3d] Submitted process > POREC:digest_align_annotate (114) Aug-17 02:36:36.597 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 123; name: POREC:digest_align_annotate (114); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/dc0c3d09816b542292897d48770765] Aug-17 02:36:36.600 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (114)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/dc0c3d09816b542292897d48770765/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:36:36.602 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:36:36.635 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:36:36.635 [Task submitter] INFO nextflow.Session - [e1/ab40cc] Submitted process > POREC:digest_align_annotate (111) Aug-17 02:37:55.291 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 120; name: POREC:digest_align_annotate (111); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/ab40cc84de8423c0fb8e209f91cffb] Aug-17 02:37:55.309 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (111)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/ab40cc84de8423c0fb8e209f91cffb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:37:55.311 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:37:55.340 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:37:55.341 [Task submitter] INFO nextflow.Session - [55/deb5da] Submitted process > POREC:digest_align_annotate (115) Aug-17 02:38:32.340 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 124; name: POREC:digest_align_annotate (115); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/deb5da07f6e54dfc0287efb7568743] Aug-17 02:39:19.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 124; name: POREC:digest_align_annotate (115); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/deb5da07f6e54dfc0287efb7568743] Aug-17 02:39:19.639 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (115)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/deb5da07f6e54dfc0287efb7568743/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:39:19.640 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:39:19.676 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:39:19.676 [Task submitter] INFO nextflow.Session - [88/56c80c] Submitted process > POREC:digest_align_annotate (117) Aug-17 02:39:21.688 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 125; name: POREC:digest_align_annotate (116); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7d5e3d2d30741d2b960ef9a8ac3a6c] ~> TaskHandler[id: 154; name: POREC:digest_align_annotate (145); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/1d702dca62a87e16bb2361ef8f70f8] ~> TaskHandler[id: 128; name: POREC:digest_align_annotate (119); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/9659715a4c3392baafe8c95ed75733] ~> TaskHandler[id: 127; name: POREC:digest_align_annotate (118); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/798117e6998c6b8be4eeb80b575e35] ~> TaskHandler[id: 130; name: POREC:digest_align_annotate (121); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/cf402ea28cde87f1c7bb3d201d6461] ~> TaskHandler[id: 129; name: POREC:digest_align_annotate (120); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4dd836835dd5648b5c91125661fbe8] ~> TaskHandler[id: 132; name: POREC:digest_align_annotate (123); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/2e60d03848e13dae76022af5bf2464] ~> TaskHandler[id: 131; name: POREC:digest_align_annotate (122); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/99056f3f64dabaf86efa1c9613a838] ~> TaskHandler[id: 133; name: POREC:digest_align_annotate (124); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/16a4b973362c917820787a7aea30a4] ~> TaskHandler[id: 135; name: POREC:digest_align_annotate (126); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/c2472a368b99f026fe0404e478682d] .. remaining tasks omitted. Aug-17 02:40:38.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 126; name: POREC:digest_align_annotate (117); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/56c80c7f13af68bd8bb931796cd9fb] Aug-17 02:40:38.024 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (117)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/56c80c7f13af68bd8bb931796cd9fb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:40:38.025 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:40:38.155 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:40:38.155 [Task submitter] INFO nextflow.Session - [06/7d5e3d] Submitted process > POREC:digest_align_annotate (116) Aug-17 02:41:59.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 125; name: POREC:digest_align_annotate (116); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7d5e3d2d30741d2b960ef9a8ac3a6c] Aug-17 02:41:59.216 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (116)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7d5e3d2d30741d2b960ef9a8ac3a6c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:41:59.218 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:41:59.266 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:41:59.266 [Task submitter] INFO nextflow.Session - [9d/1d702d] Submitted process > POREC:digest_align_annotate (145) Aug-17 02:43:25.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 154; name: POREC:digest_align_annotate (145); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/1d702dca62a87e16bb2361ef8f70f8] Aug-17 02:43:25.338 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (145)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/1d702dca62a87e16bb2361ef8f70f8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:43:25.340 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:43:25.358 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:43:25.359 [Task submitter] INFO nextflow.Session - [79/965971] Submitted process > POREC:digest_align_annotate (119) Aug-17 02:43:32.342 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 128; name: POREC:digest_align_annotate (119); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/9659715a4c3392baafe8c95ed75733] Aug-17 02:44:22.538 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 127; name: POREC:digest_align_annotate (118); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/798117e6998c6b8be4eeb80b575e35] ~> TaskHandler[id: 130; name: POREC:digest_align_annotate (121); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/cf402ea28cde87f1c7bb3d201d6461] ~> TaskHandler[id: 129; name: POREC:digest_align_annotate (120); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4dd836835dd5648b5c91125661fbe8] ~> TaskHandler[id: 132; name: POREC:digest_align_annotate (123); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/2e60d03848e13dae76022af5bf2464] ~> TaskHandler[id: 131; name: POREC:digest_align_annotate (122); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/99056f3f64dabaf86efa1c9613a838] ~> TaskHandler[id: 133; name: POREC:digest_align_annotate (124); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/16a4b973362c917820787a7aea30a4] ~> TaskHandler[id: 135; name: POREC:digest_align_annotate (126); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/c2472a368b99f026fe0404e478682d] ~> TaskHandler[id: 134; name: POREC:digest_align_annotate (125); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/4849024485c3f92f483fbc4e26b4fa] ~> TaskHandler[id: 137; name: POREC:digest_align_annotate (128); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/5043628fa7a48fba733a91b690b0bf] ~> TaskHandler[id: 136; name: POREC:digest_align_annotate (127); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/6c988509ce19a403924636fe85d42e] .. remaining tasks omitted. Aug-17 02:44:43.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 128; name: POREC:digest_align_annotate (119); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/9659715a4c3392baafe8c95ed75733] Aug-17 02:44:43.858 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (119)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/9659715a4c3392baafe8c95ed75733/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:44:43.859 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:44:43.887 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:44:43.887 [Task submitter] INFO nextflow.Session - [44/798117] Submitted process > POREC:digest_align_annotate (118) Aug-17 02:46:04.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 127; name: POREC:digest_align_annotate (118); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/798117e6998c6b8be4eeb80b575e35] Aug-17 02:46:04.610 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (118)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/798117e6998c6b8be4eeb80b575e35/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:46:04.611 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:46:04.652 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:46:04.652 [Task submitter] INFO nextflow.Session - [c2/cf402e] Submitted process > POREC:digest_align_annotate (121) Aug-17 02:47:22.538 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 130; name: POREC:digest_align_annotate (121); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/cf402ea28cde87f1c7bb3d201d6461] Aug-17 02:47:22.539 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (121)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/cf402ea28cde87f1c7bb3d201d6461/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:47:22.541 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:47:22.611 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:47:22.611 [Task submitter] INFO nextflow.Session - [27/4dd836] Submitted process > POREC:digest_align_annotate (120) Aug-17 02:48:32.420 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 129; name: POREC:digest_align_annotate (120); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4dd836835dd5648b5c91125661fbe8] Aug-17 02:48:39.960 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 129; name: POREC:digest_align_annotate (120); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4dd836835dd5648b5c91125661fbe8] Aug-17 02:48:39.962 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (120)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4dd836835dd5648b5c91125661fbe8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:48:39.964 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:48:40.070 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:48:40.070 [Task submitter] INFO nextflow.Session - [96/2e60d0] Submitted process > POREC:digest_align_annotate (123) Aug-17 02:49:23.213 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 131; name: POREC:digest_align_annotate (122); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/99056f3f64dabaf86efa1c9613a838] ~> TaskHandler[id: 133; name: POREC:digest_align_annotate (124); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/16a4b973362c917820787a7aea30a4] ~> TaskHandler[id: 135; name: POREC:digest_align_annotate (126); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/c2472a368b99f026fe0404e478682d] ~> TaskHandler[id: 134; name: POREC:digest_align_annotate (125); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/4849024485c3f92f483fbc4e26b4fa] ~> TaskHandler[id: 137; name: POREC:digest_align_annotate (128); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/5043628fa7a48fba733a91b690b0bf] ~> TaskHandler[id: 136; name: POREC:digest_align_annotate (127); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/6c988509ce19a403924636fe85d42e] ~> TaskHandler[id: 139; name: POREC:digest_align_annotate (130); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/27bb4db3a6da2b8de478a2b69d5827] ~> TaskHandler[id: 138; name: POREC:digest_align_annotate (129); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/bad44b10b34b7defcaace11f1398b5] ~> TaskHandler[id: 141; name: POREC:digest_align_annotate (132); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2a2bfe09f589df93a12222a781f02b] ~> TaskHandler[id: 140; name: POREC:digest_align_annotate (131); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/59a0b2539b0cc8bf80ebc5d87f2cb5] .. remaining tasks omitted. Aug-17 02:49:58.065 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 132; name: POREC:digest_align_annotate (123); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/2e60d03848e13dae76022af5bf2464] Aug-17 02:49:58.066 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (123)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/2e60d03848e13dae76022af5bf2464/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:49:58.068 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:49:58.148 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:49:58.148 [Task submitter] INFO nextflow.Session - [08/99056f] Submitted process > POREC:digest_align_annotate (122) Aug-17 02:51:17.388 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 131; name: POREC:digest_align_annotate (122); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/99056f3f64dabaf86efa1c9613a838] Aug-17 02:51:17.390 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (122)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/99056f3f64dabaf86efa1c9613a838/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:51:17.392 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:51:17.464 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:51:17.464 [Task submitter] INFO nextflow.Session - [76/16a4b9] Submitted process > POREC:digest_align_annotate (124) Aug-17 02:52:46.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 133; name: POREC:digest_align_annotate (124); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/16a4b973362c917820787a7aea30a4] Aug-17 02:52:46.870 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (124)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/16a4b973362c917820787a7aea30a4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:52:46.871 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:52:46.889 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:52:46.889 [Task submitter] INFO nextflow.Session - [7d/c2472a] Submitted process > POREC:digest_align_annotate (126) Aug-17 02:53:32.422 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 135; name: POREC:digest_align_annotate (126); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/c2472a368b99f026fe0404e478682d] Aug-17 02:54:08.218 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 135; name: POREC:digest_align_annotate (126); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/c2472a368b99f026fe0404e478682d] Aug-17 02:54:08.220 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (126)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/c2472a368b99f026fe0404e478682d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:54:08.222 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:54:08.242 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:54:08.242 [Task submitter] INFO nextflow.Session - [fe/484902] Submitted process > POREC:digest_align_annotate (125) Aug-17 02:54:23.316 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 137; name: POREC:digest_align_annotate (128); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/5043628fa7a48fba733a91b690b0bf] ~> TaskHandler[id: 136; name: POREC:digest_align_annotate (127); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/6c988509ce19a403924636fe85d42e] ~> TaskHandler[id: 139; name: POREC:digest_align_annotate (130); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/27bb4db3a6da2b8de478a2b69d5827] ~> TaskHandler[id: 138; name: POREC:digest_align_annotate (129); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/bad44b10b34b7defcaace11f1398b5] ~> TaskHandler[id: 141; name: POREC:digest_align_annotate (132); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2a2bfe09f589df93a12222a781f02b] ~> TaskHandler[id: 140; name: POREC:digest_align_annotate (131); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/59a0b2539b0cc8bf80ebc5d87f2cb5] ~> TaskHandler[id: 143; name: POREC:digest_align_annotate (134); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/72f1d1c315a8ca1317fa16d44f55b8] ~> TaskHandler[id: 142; name: POREC:digest_align_annotate (133); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/8fa93184406079800d05285f71b322] ~> TaskHandler[id: 147; name: POREC:digest_align_annotate (138); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/d0cc22206bd6ed528be1c0efb7f9e6] ~> TaskHandler[id: 146; name: POREC:digest_align_annotate (137); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f3529e35e3a141ca75582ee0f60098] .. remaining tasks omitted. Aug-17 02:55:33.513 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 134; name: POREC:digest_align_annotate (125); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/4849024485c3f92f483fbc4e26b4fa] Aug-17 02:55:33.514 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (125)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/4849024485c3f92f483fbc4e26b4fa/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:55:33.515 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:55:33.555 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:55:33.555 [Task submitter] INFO nextflow.Session - [15/504362] Submitted process > POREC:digest_align_annotate (128) Aug-17 02:56:50.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 137; name: POREC:digest_align_annotate (128); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/5043628fa7a48fba733a91b690b0bf] Aug-17 02:56:50.843 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (128)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/5043628fa7a48fba733a91b690b0bf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:56:50.844 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:56:50.875 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:56:50.876 [Task submitter] INFO nextflow.Session - [b2/6c9885] Submitted process > POREC:digest_align_annotate (127) Aug-17 02:58:09.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 136; name: POREC:digest_align_annotate (127); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/6c988509ce19a403924636fe85d42e] Aug-17 02:58:09.346 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (127)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/6c988509ce19a403924636fe85d42e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:58:09.347 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:58:09.353 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:58:09.354 [Task submitter] INFO nextflow.Session - [86/27bb4d] Submitted process > POREC:digest_align_annotate (130) Aug-17 02:58:32.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 139; name: POREC:digest_align_annotate (130); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/27bb4db3a6da2b8de478a2b69d5827] Aug-17 02:59:23.597 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 138; name: POREC:digest_align_annotate (129); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/bad44b10b34b7defcaace11f1398b5] ~> TaskHandler[id: 141; name: POREC:digest_align_annotate (132); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2a2bfe09f589df93a12222a781f02b] ~> TaskHandler[id: 140; name: POREC:digest_align_annotate (131); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/59a0b2539b0cc8bf80ebc5d87f2cb5] ~> TaskHandler[id: 143; name: POREC:digest_align_annotate (134); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/72f1d1c315a8ca1317fa16d44f55b8] ~> TaskHandler[id: 142; name: POREC:digest_align_annotate (133); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/8fa93184406079800d05285f71b322] ~> TaskHandler[id: 147; name: POREC:digest_align_annotate (138); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/d0cc22206bd6ed528be1c0efb7f9e6] ~> TaskHandler[id: 146; name: POREC:digest_align_annotate (137); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f3529e35e3a141ca75582ee0f60098] ~> TaskHandler[id: 148; name: POREC:digest_align_annotate (139); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/eb927de83086ed75e03e14eeafb575] ~> TaskHandler[id: 150; name: POREC:digest_align_annotate (141); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/bd3c19c39229594f09641567083271] ~> TaskHandler[id: 149; name: POREC:digest_align_annotate (140); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/d8bb194452263a7776c20dad1c407f] .. remaining tasks omitted. Aug-17 02:59:26.813 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 139; name: POREC:digest_align_annotate (130); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/27bb4db3a6da2b8de478a2b69d5827] Aug-17 02:59:26.815 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (130)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/27bb4db3a6da2b8de478a2b69d5827/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 02:59:26.816 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 02:59:26.859 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 02:59:26.859 [Task submitter] INFO nextflow.Session - [74/bad44b] Submitted process > POREC:digest_align_annotate (129) Aug-17 03:00:45.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 138; name: POREC:digest_align_annotate (129); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/bad44b10b34b7defcaace11f1398b5] Aug-17 03:00:45.416 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (129)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/bad44b10b34b7defcaace11f1398b5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:00:45.417 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:00:45.478 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:00:45.478 [Task submitter] INFO nextflow.Session - [a9/2a2bfe] Submitted process > POREC:digest_align_annotate (132) Aug-17 03:02:07.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 141; name: POREC:digest_align_annotate (132); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2a2bfe09f589df93a12222a781f02b] Aug-17 03:02:07.362 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (132)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2a2bfe09f589df93a12222a781f02b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:02:07.363 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:02:07.385 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:02:07.385 [Task submitter] INFO nextflow.Session - [4d/59a0b2] Submitted process > POREC:digest_align_annotate (131) Aug-17 03:03:31.264 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 140; name: POREC:digest_align_annotate (131); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/59a0b2539b0cc8bf80ebc5d87f2cb5] Aug-17 03:03:31.294 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (131)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/59a0b2539b0cc8bf80ebc5d87f2cb5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:03:31.296 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:03:31.332 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:03:31.333 [Task submitter] INFO nextflow.Session - [a9/72f1d1] Submitted process > POREC:digest_align_annotate (134) Aug-17 03:03:32.565 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 143; name: POREC:digest_align_annotate (134); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/72f1d1c315a8ca1317fa16d44f55b8] Aug-17 03:04:24.509 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 142; name: POREC:digest_align_annotate (133); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/8fa93184406079800d05285f71b322] ~> TaskHandler[id: 147; name: POREC:digest_align_annotate (138); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/d0cc22206bd6ed528be1c0efb7f9e6] ~> TaskHandler[id: 146; name: POREC:digest_align_annotate (137); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f3529e35e3a141ca75582ee0f60098] ~> TaskHandler[id: 148; name: POREC:digest_align_annotate (139); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/eb927de83086ed75e03e14eeafb575] ~> TaskHandler[id: 150; name: POREC:digest_align_annotate (141); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/bd3c19c39229594f09641567083271] ~> TaskHandler[id: 149; name: POREC:digest_align_annotate (140); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/d8bb194452263a7776c20dad1c407f] ~> TaskHandler[id: 145; name: POREC:digest_align_annotate (136); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/15e4db6d42d1017ccfa6b177cd660b] ~> TaskHandler[id: 151; name: POREC:digest_align_annotate (142); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/932197597dd359218fd4e6724cb1ae] ~> TaskHandler[id: 144; name: POREC:digest_align_annotate (135); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1575f06999a9590ed0697ba681fba7] ~> TaskHandler[id: 157; name: POREC:digest_align_annotate (148); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/5aade644e884dfcf2a3cbae7807a25] .. remaining tasks omitted. Aug-17 03:05:09.366 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 143; name: POREC:digest_align_annotate (134); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/72f1d1c315a8ca1317fa16d44f55b8] Aug-17 03:05:09.367 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (134)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/72f1d1c315a8ca1317fa16d44f55b8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:05:09.377 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:05:09.399 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:05:09.399 [Task submitter] INFO nextflow.Session - [82/8fa931] Submitted process > POREC:digest_align_annotate (133) Aug-17 03:06:46.029 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 142; name: POREC:digest_align_annotate (133); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/8fa93184406079800d05285f71b322] Aug-17 03:06:46.031 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (133)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/8fa93184406079800d05285f71b322/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:06:46.032 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:06:46.077 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:06:46.077 [Task submitter] INFO nextflow.Session - [a3/d0cc22] Submitted process > POREC:digest_align_annotate (138) Aug-17 03:08:14.010 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 147; name: POREC:digest_align_annotate (138); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/d0cc22206bd6ed528be1c0efb7f9e6] Aug-17 03:08:14.011 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (138)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/d0cc22206bd6ed528be1c0efb7f9e6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:08:14.012 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:08:14.107 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:08:14.108 [Task submitter] INFO nextflow.Session - [b6/f3529e] Submitted process > POREC:digest_align_annotate (137) Aug-17 03:08:32.628 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 146; name: POREC:digest_align_annotate (137); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f3529e35e3a141ca75582ee0f60098] Aug-17 03:09:25.344 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 148; name: POREC:digest_align_annotate (139); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/eb927de83086ed75e03e14eeafb575] ~> TaskHandler[id: 150; name: POREC:digest_align_annotate (141); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/bd3c19c39229594f09641567083271] ~> TaskHandler[id: 149; name: POREC:digest_align_annotate (140); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/d8bb194452263a7776c20dad1c407f] ~> TaskHandler[id: 145; name: POREC:digest_align_annotate (136); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/15e4db6d42d1017ccfa6b177cd660b] ~> TaskHandler[id: 151; name: POREC:digest_align_annotate (142); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/932197597dd359218fd4e6724cb1ae] ~> TaskHandler[id: 144; name: POREC:digest_align_annotate (135); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1575f06999a9590ed0697ba681fba7] ~> TaskHandler[id: 157; name: POREC:digest_align_annotate (148); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/5aade644e884dfcf2a3cbae7807a25] ~> TaskHandler[id: 156; name: POREC:digest_align_annotate (147); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/c2e5bf8b5fda650f57c1c23846e4cb] ~> TaskHandler[id: 153; name: POREC:digest_align_annotate (144); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/84fdd146249496e2e93918c22e97b4] ~> TaskHandler[id: 158; name: POREC:digest_align_annotate (149); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/00afae9a1fec0f0f3b47248b4294bb] .. remaining tasks omitted. Aug-17 03:09:51.905 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 146; name: POREC:digest_align_annotate (137); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f3529e35e3a141ca75582ee0f60098] Aug-17 03:09:51.906 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (137)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f3529e35e3a141ca75582ee0f60098/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:09:51.907 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:09:51.914 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:09:51.914 [Task submitter] INFO nextflow.Session - [2d/eb927d] Submitted process > POREC:digest_align_annotate (139) Aug-17 03:11:32.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 148; name: POREC:digest_align_annotate (139); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/eb927de83086ed75e03e14eeafb575] Aug-17 03:11:32.241 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (139)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/eb927de83086ed75e03e14eeafb575/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:11:32.243 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:11:32.281 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:11:32.282 [Task submitter] INFO nextflow.Session - [33/bd3c19] Submitted process > POREC:digest_align_annotate (141) Aug-17 03:13:12.433 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 150; name: POREC:digest_align_annotate (141); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/bd3c19c39229594f09641567083271] Aug-17 03:13:12.434 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (141)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/bd3c19c39229594f09641567083271/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:13:12.435 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:13:12.474 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:13:12.474 [Task submitter] INFO nextflow.Session - [3e/d8bb19] Submitted process > POREC:digest_align_annotate (140) Aug-17 03:13:32.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 149; name: POREC:digest_align_annotate (140); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/d8bb194452263a7776c20dad1c407f] Aug-17 03:14:25.715 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 145; name: POREC:digest_align_annotate (136); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/15e4db6d42d1017ccfa6b177cd660b] ~> TaskHandler[id: 151; name: POREC:digest_align_annotate (142); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/932197597dd359218fd4e6724cb1ae] ~> TaskHandler[id: 144; name: POREC:digest_align_annotate (135); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1575f06999a9590ed0697ba681fba7] ~> TaskHandler[id: 157; name: POREC:digest_align_annotate (148); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/5aade644e884dfcf2a3cbae7807a25] ~> TaskHandler[id: 156; name: POREC:digest_align_annotate (147); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/c2e5bf8b5fda650f57c1c23846e4cb] ~> TaskHandler[id: 153; name: POREC:digest_align_annotate (144); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/84fdd146249496e2e93918c22e97b4] ~> TaskHandler[id: 158; name: POREC:digest_align_annotate (149); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/00afae9a1fec0f0f3b47248b4294bb] ~> TaskHandler[id: 152; name: POREC:digest_align_annotate (143); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/55a5920c262d228bb31877ebdd3c03] ~> TaskHandler[id: 155; name: POREC:digest_align_annotate (146); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/22de44afcb42524b8acb5b14b7e301] ~> TaskHandler[id: 160; name: POREC:digest_align_annotate (151); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ad173a9bcf2c0362f41a3244a81fbc] .. remaining tasks omitted. Aug-17 03:14:50.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 149; name: POREC:digest_align_annotate (140); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/d8bb194452263a7776c20dad1c407f] Aug-17 03:14:50.481 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (140)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/d8bb194452263a7776c20dad1c407f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:14:50.482 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:14:50.509 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:14:50.509 [Task submitter] INFO nextflow.Session - [1e/15e4db] Submitted process > POREC:digest_align_annotate (136) Aug-17 03:16:13.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 145; name: POREC:digest_align_annotate (136); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/15e4db6d42d1017ccfa6b177cd660b] Aug-17 03:16:13.749 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (136)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/15e4db6d42d1017ccfa6b177cd660b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:16:13.751 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:16:13.791 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:16:13.791 [Task submitter] INFO nextflow.Session - [d6/932197] Submitted process > POREC:digest_align_annotate (142) Aug-17 03:17:53.911 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 151; name: POREC:digest_align_annotate (142); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/932197597dd359218fd4e6724cb1ae] Aug-17 03:17:53.924 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (142)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/932197597dd359218fd4e6724cb1ae/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:17:53.925 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:17:53.967 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:17:53.967 [Task submitter] INFO nextflow.Session - [c9/1575f0] Submitted process > POREC:digest_align_annotate (135) Aug-17 03:18:32.663 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 144; name: POREC:digest_align_annotate (135); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1575f06999a9590ed0697ba681fba7] Aug-17 03:19:26.268 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 157; name: POREC:digest_align_annotate (148); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/5aade644e884dfcf2a3cbae7807a25] ~> TaskHandler[id: 156; name: POREC:digest_align_annotate (147); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/c2e5bf8b5fda650f57c1c23846e4cb] ~> TaskHandler[id: 153; name: POREC:digest_align_annotate (144); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/84fdd146249496e2e93918c22e97b4] ~> TaskHandler[id: 158; name: POREC:digest_align_annotate (149); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/00afae9a1fec0f0f3b47248b4294bb] ~> TaskHandler[id: 152; name: POREC:digest_align_annotate (143); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/55a5920c262d228bb31877ebdd3c03] ~> TaskHandler[id: 155; name: POREC:digest_align_annotate (146); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/22de44afcb42524b8acb5b14b7e301] ~> TaskHandler[id: 160; name: POREC:digest_align_annotate (151); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ad173a9bcf2c0362f41a3244a81fbc] ~> TaskHandler[id: 161; name: POREC:digest_align_annotate (152); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/0342e2029dad2393087866da8ef0a5] ~> TaskHandler[id: 159; name: POREC:digest_align_annotate (150); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c5d2b910c82f19ecefdd703794c89] ~> TaskHandler[id: 162; name: POREC:digest_align_annotate (153); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/a0a420292c17eb04b6f3df2aacf0a0] .. remaining tasks omitted. Aug-17 03:19:30.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 144; name: POREC:digest_align_annotate (135); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1575f06999a9590ed0697ba681fba7] Aug-17 03:19:30.659 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (135)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1575f06999a9590ed0697ba681fba7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:19:30.661 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:19:30.703 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:19:30.703 [Task submitter] INFO nextflow.Session - [da/5aade6] Submitted process > POREC:digest_align_annotate (148) Aug-17 03:20:57.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 157; name: POREC:digest_align_annotate (148); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/5aade644e884dfcf2a3cbae7807a25] Aug-17 03:20:57.453 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (148)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/5aade644e884dfcf2a3cbae7807a25/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:20:57.454 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:20:57.507 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:20:57.507 [Task submitter] INFO nextflow.Session - [4c/c2e5bf] Submitted process > POREC:digest_align_annotate (147) Aug-17 03:22:22.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 156; name: POREC:digest_align_annotate (147); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/c2e5bf8b5fda650f57c1c23846e4cb] Aug-17 03:22:22.214 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (147)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/c2e5bf8b5fda650f57c1c23846e4cb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:22:22.215 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:22:22.239 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:22:22.239 [Task submitter] INFO nextflow.Session - [57/84fdd1] Submitted process > POREC:digest_align_annotate (144) Aug-17 03:23:32.707 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 153; name: POREC:digest_align_annotate (144); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/84fdd146249496e2e93918c22e97b4] Aug-17 03:23:51.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 153; name: POREC:digest_align_annotate (144); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/84fdd146249496e2e93918c22e97b4] Aug-17 03:23:51.632 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (144)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/84fdd146249496e2e93918c22e97b4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:23:51.634 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:23:51.677 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:23:51.678 [Task submitter] INFO nextflow.Session - [d5/00afae] Submitted process > POREC:digest_align_annotate (149) Aug-17 03:24:26.797 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 152; name: POREC:digest_align_annotate (143); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/55a5920c262d228bb31877ebdd3c03] ~> TaskHandler[id: 155; name: POREC:digest_align_annotate (146); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/22de44afcb42524b8acb5b14b7e301] ~> TaskHandler[id: 160; name: POREC:digest_align_annotate (151); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ad173a9bcf2c0362f41a3244a81fbc] ~> TaskHandler[id: 161; name: POREC:digest_align_annotate (152); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/0342e2029dad2393087866da8ef0a5] ~> TaskHandler[id: 159; name: POREC:digest_align_annotate (150); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c5d2b910c82f19ecefdd703794c89] ~> TaskHandler[id: 162; name: POREC:digest_align_annotate (153); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/a0a420292c17eb04b6f3df2aacf0a0] ~> TaskHandler[id: 163; name: POREC:digest_align_annotate (154); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/c153634332a1cf6dff01ad68dd2f8c] ~> TaskHandler[id: 164; name: POREC:digest_align_annotate (155); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/b7d9db3942b5825e6d5c3774eb5587] ~> TaskHandler[id: 196; name: POREC:digest_align_annotate (187); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/67939d1eb78bd41aff7bbb9f615eb2] ~> TaskHandler[id: 166; name: POREC:digest_align_annotate (157); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/c19d438f71f10254564be8bfa03dc5] .. remaining tasks omitted. Aug-17 03:25:16.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 158; name: POREC:digest_align_annotate (149); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/00afae9a1fec0f0f3b47248b4294bb] Aug-17 03:25:16.422 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (149)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/00afae9a1fec0f0f3b47248b4294bb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:25:16.423 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:25:16.473 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:25:16.473 [Task submitter] INFO nextflow.Session - [9e/55a592] Submitted process > POREC:digest_align_annotate (143) Aug-17 03:26:42.920 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 152; name: POREC:digest_align_annotate (143); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/55a5920c262d228bb31877ebdd3c03] Aug-17 03:26:42.921 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (143)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/55a5920c262d228bb31877ebdd3c03/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:26:42.922 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:26:42.939 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:26:42.939 [Task submitter] INFO nextflow.Session - [0c/22de44] Submitted process > POREC:digest_align_annotate (146) Aug-17 03:28:08.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 155; name: POREC:digest_align_annotate (146); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/22de44afcb42524b8acb5b14b7e301] Aug-17 03:28:08.960 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (146)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/22de44afcb42524b8acb5b14b7e301/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:28:08.961 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:28:08.967 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:28:08.967 [Task submitter] INFO nextflow.Session - [b3/ad173a] Submitted process > POREC:digest_align_annotate (151) Aug-17 03:28:32.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 160; name: POREC:digest_align_annotate (151); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ad173a9bcf2c0362f41a3244a81fbc] Aug-17 03:29:27.217 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 161; name: POREC:digest_align_annotate (152); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/0342e2029dad2393087866da8ef0a5] ~> TaskHandler[id: 159; name: POREC:digest_align_annotate (150); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c5d2b910c82f19ecefdd703794c89] ~> TaskHandler[id: 162; name: POREC:digest_align_annotate (153); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/a0a420292c17eb04b6f3df2aacf0a0] ~> TaskHandler[id: 163; name: POREC:digest_align_annotate (154); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/c153634332a1cf6dff01ad68dd2f8c] ~> TaskHandler[id: 164; name: POREC:digest_align_annotate (155); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/b7d9db3942b5825e6d5c3774eb5587] ~> TaskHandler[id: 196; name: POREC:digest_align_annotate (187); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/67939d1eb78bd41aff7bbb9f615eb2] ~> TaskHandler[id: 166; name: POREC:digest_align_annotate (157); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/c19d438f71f10254564be8bfa03dc5] ~> TaskHandler[id: 165; name: POREC:digest_align_annotate (156); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/b5b07f3de64df88849dc6304450795] ~> TaskHandler[id: 168; name: POREC:digest_align_annotate (159); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/223bf1657a2e387428277264ceedf4] ~> TaskHandler[id: 167; name: POREC:digest_align_annotate (158); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/88612c64bb522207f7297d15c035cc] .. remaining tasks omitted. Aug-17 03:29:32.538 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 160; name: POREC:digest_align_annotate (151); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ad173a9bcf2c0362f41a3244a81fbc] Aug-17 03:29:32.539 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (151)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ad173a9bcf2c0362f41a3244a81fbc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:29:32.540 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:29:32.599 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:29:32.599 [Task submitter] INFO nextflow.Session - [95/0342e2] Submitted process > POREC:digest_align_annotate (152) Aug-17 03:30:56.623 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 161; name: POREC:digest_align_annotate (152); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/0342e2029dad2393087866da8ef0a5] Aug-17 03:30:56.624 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (152)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/0342e2029dad2393087866da8ef0a5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:30:56.626 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:30:56.650 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:30:56.651 [Task submitter] INFO nextflow.Session - [e4/8c5d2b] Submitted process > POREC:digest_align_annotate (150) Aug-17 03:32:22.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 159; name: POREC:digest_align_annotate (150); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c5d2b910c82f19ecefdd703794c89] Aug-17 03:32:22.842 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (150)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c5d2b910c82f19ecefdd703794c89/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:32:22.844 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:32:22.898 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:32:22.898 [Task submitter] INFO nextflow.Session - [2a/a0a420] Submitted process > POREC:digest_align_annotate (153) Aug-17 03:33:32.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 162; name: POREC:digest_align_annotate (153); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/a0a420292c17eb04b6f3df2aacf0a0] Aug-17 03:33:50.886 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 162; name: POREC:digest_align_annotate (153); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/a0a420292c17eb04b6f3df2aacf0a0] Aug-17 03:33:50.887 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (153)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/a0a420292c17eb04b6f3df2aacf0a0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:33:50.888 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:33:50.918 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:33:50.918 [Task submitter] INFO nextflow.Session - [2e/c15363] Submitted process > POREC:digest_align_annotate (154) Aug-17 03:34:28.042 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 164; name: POREC:digest_align_annotate (155); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/b7d9db3942b5825e6d5c3774eb5587] ~> TaskHandler[id: 196; name: POREC:digest_align_annotate (187); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/67939d1eb78bd41aff7bbb9f615eb2] ~> TaskHandler[id: 166; name: POREC:digest_align_annotate (157); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/c19d438f71f10254564be8bfa03dc5] ~> TaskHandler[id: 165; name: POREC:digest_align_annotate (156); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/b5b07f3de64df88849dc6304450795] ~> TaskHandler[id: 168; name: POREC:digest_align_annotate (159); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/223bf1657a2e387428277264ceedf4] ~> TaskHandler[id: 167; name: POREC:digest_align_annotate (158); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/88612c64bb522207f7297d15c035cc] ~> TaskHandler[id: 169; name: POREC:digest_align_annotate (160); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a8963341fb0860e8e3237d2f456105] ~> TaskHandler[id: 170; name: POREC:digest_align_annotate (161); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/343d1b5e45cca134591e2471c62c3b] ~> TaskHandler[id: 171; name: POREC:digest_align_annotate (162); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/98d6aef1912badb037dc040edf3f49] ~> TaskHandler[id: 173; name: POREC:digest_align_annotate (164); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/10b944ddd6ecb35f2b84cc140703f7] .. remaining tasks omitted. Aug-17 03:35:17.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 163; name: POREC:digest_align_annotate (154); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/c153634332a1cf6dff01ad68dd2f8c] Aug-17 03:35:17.111 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (154)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/c153634332a1cf6dff01ad68dd2f8c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:35:17.112 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:35:17.136 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:35:17.136 [Task submitter] INFO nextflow.Session - [53/b7d9db] Submitted process > POREC:digest_align_annotate (155) Aug-17 03:36:40.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 164; name: POREC:digest_align_annotate (155); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/b7d9db3942b5825e6d5c3774eb5587] Aug-17 03:36:40.405 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (155)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/b7d9db3942b5825e6d5c3774eb5587/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:36:40.406 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:36:40.456 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:36:40.457 [Task submitter] INFO nextflow.Session - [e4/67939d] Submitted process > POREC:digest_align_annotate (187) Aug-17 03:38:04.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 196; name: POREC:digest_align_annotate (187); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/67939d1eb78bd41aff7bbb9f615eb2] Aug-17 03:38:04.155 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (187)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/67939d1eb78bd41aff7bbb9f615eb2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:38:04.156 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:38:04.178 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:38:04.178 [Task submitter] INFO nextflow.Session - [de/c19d43] Submitted process > POREC:digest_align_annotate (157) Aug-17 03:38:32.889 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 166; name: POREC:digest_align_annotate (157); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/c19d438f71f10254564be8bfa03dc5] Aug-17 03:39:28.470 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 165; name: POREC:digest_align_annotate (156); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/b5b07f3de64df88849dc6304450795] ~> TaskHandler[id: 168; name: POREC:digest_align_annotate (159); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/223bf1657a2e387428277264ceedf4] ~> TaskHandler[id: 167; name: POREC:digest_align_annotate (158); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/88612c64bb522207f7297d15c035cc] ~> TaskHandler[id: 169; name: POREC:digest_align_annotate (160); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a8963341fb0860e8e3237d2f456105] ~> TaskHandler[id: 170; name: POREC:digest_align_annotate (161); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/343d1b5e45cca134591e2471c62c3b] ~> TaskHandler[id: 171; name: POREC:digest_align_annotate (162); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/98d6aef1912badb037dc040edf3f49] ~> TaskHandler[id: 173; name: POREC:digest_align_annotate (164); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/10b944ddd6ecb35f2b84cc140703f7] ~> TaskHandler[id: 172; name: POREC:digest_align_annotate (163); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/dffa0a15a22d42ae289e61f4cd22fc] ~> TaskHandler[id: 174; name: POREC:digest_align_annotate (165); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/cf2661a82ca311ab13d524a9bc5dad] ~> TaskHandler[id: 175; name: POREC:digest_align_annotate (166); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2f6fd86cd553f8c319ee082f68a2ec] .. remaining tasks omitted. Aug-17 03:39:28.836 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 166; name: POREC:digest_align_annotate (157); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/c19d438f71f10254564be8bfa03dc5] Aug-17 03:39:28.837 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (157)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/c19d438f71f10254564be8bfa03dc5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:39:28.838 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:39:28.875 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:39:28.875 [Task submitter] INFO nextflow.Session - [10/b5b07f] Submitted process > POREC:digest_align_annotate (156) Aug-17 03:40:52.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 165; name: POREC:digest_align_annotate (156); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/b5b07f3de64df88849dc6304450795] Aug-17 03:40:52.612 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (156)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/b5b07f3de64df88849dc6304450795/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:40:52.613 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:40:52.677 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:40:52.677 [Task submitter] INFO nextflow.Session - [9b/223bf1] Submitted process > POREC:digest_align_annotate (159) Aug-17 03:42:18.768 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 168; name: POREC:digest_align_annotate (159); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/223bf1657a2e387428277264ceedf4] Aug-17 03:42:18.771 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (159)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/223bf1657a2e387428277264ceedf4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:42:18.773 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:42:18.779 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:42:18.779 [Task submitter] INFO nextflow.Session - [da/88612c] Submitted process > POREC:digest_align_annotate (158) Aug-17 03:43:32.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 167; name: POREC:digest_align_annotate (158); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/88612c64bb522207f7297d15c035cc] Aug-17 03:43:44.715 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 167; name: POREC:digest_align_annotate (158); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/88612c64bb522207f7297d15c035cc] Aug-17 03:43:44.715 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (158)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/88612c64bb522207f7297d15c035cc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:43:44.716 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:43:44.747 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:43:44.747 [Task submitter] INFO nextflow.Session - [62/a89633] Submitted process > POREC:digest_align_annotate (160) Aug-17 03:44:28.890 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 170; name: POREC:digest_align_annotate (161); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/343d1b5e45cca134591e2471c62c3b] ~> TaskHandler[id: 171; name: POREC:digest_align_annotate (162); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/98d6aef1912badb037dc040edf3f49] ~> TaskHandler[id: 173; name: POREC:digest_align_annotate (164); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/10b944ddd6ecb35f2b84cc140703f7] ~> TaskHandler[id: 172; name: POREC:digest_align_annotate (163); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/dffa0a15a22d42ae289e61f4cd22fc] ~> TaskHandler[id: 174; name: POREC:digest_align_annotate (165); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/cf2661a82ca311ab13d524a9bc5dad] ~> TaskHandler[id: 175; name: POREC:digest_align_annotate (166); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2f6fd86cd553f8c319ee082f68a2ec] ~> TaskHandler[id: 176; name: POREC:digest_align_annotate (167); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/7ca2950920697f18bfc66a2ab24159] ~> TaskHandler[id: 178; name: POREC:digest_align_annotate (169); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1174f60d39941b2e1fce757b41ede8] ~> TaskHandler[id: 177; name: POREC:digest_align_annotate (168); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/662d0c70b478eeda80e292769470f0] ~> TaskHandler[id: 179; name: POREC:digest_align_annotate (170); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/824a707c395aec5314ada8fed402e6] .. remaining tasks omitted. Aug-17 03:45:26.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 169; name: POREC:digest_align_annotate (160); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a8963341fb0860e8e3237d2f456105] Aug-17 03:45:26.335 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (160)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a8963341fb0860e8e3237d2f456105/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:45:26.356 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:45:26.365 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:45:26.366 [Task submitter] INFO nextflow.Session - [98/343d1b] Submitted process > POREC:digest_align_annotate (161) Aug-17 03:46:56.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 170; name: POREC:digest_align_annotate (161); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/343d1b5e45cca134591e2471c62c3b] Aug-17 03:46:56.314 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (161)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/343d1b5e45cca134591e2471c62c3b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:46:56.316 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:46:56.361 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:46:56.361 [Task submitter] INFO nextflow.Session - [da/98d6ae] Submitted process > POREC:digest_align_annotate (162) Aug-17 03:48:33.045 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 171; name: POREC:digest_align_annotate (162); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/98d6aef1912badb037dc040edf3f49] Aug-17 03:48:35.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 171; name: POREC:digest_align_annotate (162); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/98d6aef1912badb037dc040edf3f49] Aug-17 03:48:35.347 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (162)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/98d6aef1912badb037dc040edf3f49/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:48:35.348 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:48:35.389 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:48:35.389 [Task submitter] INFO nextflow.Session - [3e/10b944] Submitted process > POREC:digest_align_annotate (164) Aug-17 03:49:29.563 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 172; name: POREC:digest_align_annotate (163); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/dffa0a15a22d42ae289e61f4cd22fc] ~> TaskHandler[id: 174; name: POREC:digest_align_annotate (165); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/cf2661a82ca311ab13d524a9bc5dad] ~> TaskHandler[id: 175; name: POREC:digest_align_annotate (166); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2f6fd86cd553f8c319ee082f68a2ec] ~> TaskHandler[id: 176; name: POREC:digest_align_annotate (167); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/7ca2950920697f18bfc66a2ab24159] ~> TaskHandler[id: 178; name: POREC:digest_align_annotate (169); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1174f60d39941b2e1fce757b41ede8] ~> TaskHandler[id: 177; name: POREC:digest_align_annotate (168); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/662d0c70b478eeda80e292769470f0] ~> TaskHandler[id: 179; name: POREC:digest_align_annotate (170); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/824a707c395aec5314ada8fed402e6] ~> TaskHandler[id: 180; name: POREC:digest_align_annotate (171); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/c87d10cfa1f0c1b39cbe86bba4ebc4] ~> TaskHandler[id: 181; name: POREC:digest_align_annotate (172); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e58c69408ba6025e785a1fc0f5b3ea] ~> TaskHandler[id: 183; name: POREC:digest_align_annotate (174); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/26b867828b9935db5be05a1c02d98f] .. remaining tasks omitted. Aug-17 03:50:01.986 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 173; name: POREC:digest_align_annotate (164); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/10b944ddd6ecb35f2b84cc140703f7] Aug-17 03:50:01.988 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (164)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/10b944ddd6ecb35f2b84cc140703f7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:50:01.989 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:50:02.031 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:50:02.031 [Task submitter] INFO nextflow.Session - [95/dffa0a] Submitted process > POREC:digest_align_annotate (163) Aug-17 03:51:22.532 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 172; name: POREC:digest_align_annotate (163); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/dffa0a15a22d42ae289e61f4cd22fc] Aug-17 03:51:22.533 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (163)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/dffa0a15a22d42ae289e61f4cd22fc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:51:22.534 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:51:22.581 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:51:22.582 [Task submitter] INFO nextflow.Session - [28/cf2661] Submitted process > POREC:digest_align_annotate (165) Aug-17 03:53:03.320 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 174; name: POREC:digest_align_annotate (165); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/cf2661a82ca311ab13d524a9bc5dad] Aug-17 03:53:03.322 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (165)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/cf2661a82ca311ab13d524a9bc5dad/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:53:03.324 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:53:03.374 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:53:03.374 [Task submitter] INFO nextflow.Session - [0b/2f6fd8] Submitted process > POREC:digest_align_annotate (166) Aug-17 03:53:33.057 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 175; name: POREC:digest_align_annotate (166); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2f6fd86cd553f8c319ee082f68a2ec] Aug-17 03:54:29.644 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 176; name: POREC:digest_align_annotate (167); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/7ca2950920697f18bfc66a2ab24159] ~> TaskHandler[id: 178; name: POREC:digest_align_annotate (169); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1174f60d39941b2e1fce757b41ede8] ~> TaskHandler[id: 177; name: POREC:digest_align_annotate (168); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/662d0c70b478eeda80e292769470f0] ~> TaskHandler[id: 179; name: POREC:digest_align_annotate (170); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/824a707c395aec5314ada8fed402e6] ~> TaskHandler[id: 180; name: POREC:digest_align_annotate (171); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/c87d10cfa1f0c1b39cbe86bba4ebc4] ~> TaskHandler[id: 181; name: POREC:digest_align_annotate (172); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e58c69408ba6025e785a1fc0f5b3ea] ~> TaskHandler[id: 183; name: POREC:digest_align_annotate (174); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/26b867828b9935db5be05a1c02d98f] ~> TaskHandler[id: 182; name: POREC:digest_align_annotate (173); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/7b202c77a98a11c4886412c50457a9] ~> TaskHandler[id: 184; name: POREC:digest_align_annotate (175); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/384c788187cd47b15de714530ecc92] ~> TaskHandler[id: 185; name: POREC:digest_align_annotate (176); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/b0a294e60dc6f2065b4d1aea4c024a] .. remaining tasks omitted. Aug-17 03:54:40.934 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 175; name: POREC:digest_align_annotate (166); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2f6fd86cd553f8c319ee082f68a2ec] Aug-17 03:54:40.935 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (166)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2f6fd86cd553f8c319ee082f68a2ec/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:54:40.936 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:54:40.992 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:54:40.993 [Task submitter] INFO nextflow.Session - [53/7ca295] Submitted process > POREC:digest_align_annotate (167) Aug-17 03:56:24.878 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 176; name: POREC:digest_align_annotate (167); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/7ca2950920697f18bfc66a2ab24159] Aug-17 03:56:24.904 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (167)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/7ca2950920697f18bfc66a2ab24159/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:56:24.905 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:56:24.963 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:56:24.964 [Task submitter] INFO nextflow.Session - [c0/1174f6] Submitted process > POREC:digest_align_annotate (169) Aug-17 03:58:00.723 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 178; name: POREC:digest_align_annotate (169); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1174f60d39941b2e1fce757b41ede8] Aug-17 03:58:00.745 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (169)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1174f60d39941b2e1fce757b41ede8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:58:00.746 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:58:00.776 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:58:00.777 [Task submitter] INFO nextflow.Session - [34/662d0c] Submitted process > POREC:digest_align_annotate (168) Aug-17 03:58:33.081 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 177; name: POREC:digest_align_annotate (168); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/662d0c70b478eeda80e292769470f0] Aug-17 03:59:30.063 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 179; name: POREC:digest_align_annotate (170); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/824a707c395aec5314ada8fed402e6] ~> TaskHandler[id: 180; name: POREC:digest_align_annotate (171); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/c87d10cfa1f0c1b39cbe86bba4ebc4] ~> TaskHandler[id: 181; name: POREC:digest_align_annotate (172); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e58c69408ba6025e785a1fc0f5b3ea] ~> TaskHandler[id: 183; name: POREC:digest_align_annotate (174); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/26b867828b9935db5be05a1c02d98f] ~> TaskHandler[id: 182; name: POREC:digest_align_annotate (173); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/7b202c77a98a11c4886412c50457a9] ~> TaskHandler[id: 184; name: POREC:digest_align_annotate (175); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/384c788187cd47b15de714530ecc92] ~> TaskHandler[id: 185; name: POREC:digest_align_annotate (176); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/b0a294e60dc6f2065b4d1aea4c024a] ~> TaskHandler[id: 187; name: POREC:digest_align_annotate (178); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/80e4ef8c17b11ddda31fc6cb99ef3e] ~> TaskHandler[id: 186; name: POREC:digest_align_annotate (177); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d70a101bc5a3445bd6509ddd94aa35] ~> TaskHandler[id: 220; name: POREC:digest_align_annotate (211); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/a32d3df3ae847fd5e6efc05ffb7cbe] .. remaining tasks omitted. Aug-17 03:59:37.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 177; name: POREC:digest_align_annotate (168); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/662d0c70b478eeda80e292769470f0] Aug-17 03:59:37.511 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (168)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/662d0c70b478eeda80e292769470f0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 03:59:37.512 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 03:59:37.591 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 03:59:37.591 [Task submitter] INFO nextflow.Session - [ba/824a70] Submitted process > POREC:digest_align_annotate (170) Aug-17 04:01:06.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 179; name: POREC:digest_align_annotate (170); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/824a707c395aec5314ada8fed402e6] Aug-17 04:01:06.801 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (170)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/824a707c395aec5314ada8fed402e6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:01:06.802 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:01:06.822 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:01:06.823 [Task submitter] INFO nextflow.Session - [12/c87d10] Submitted process > POREC:digest_align_annotate (171) Aug-17 04:02:32.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 180; name: POREC:digest_align_annotate (171); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/c87d10cfa1f0c1b39cbe86bba4ebc4] Aug-17 04:02:32.748 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (171)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/c87d10cfa1f0c1b39cbe86bba4ebc4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:02:32.749 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:02:32.774 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:02:32.774 [Task submitter] INFO nextflow.Session - [45/e58c69] Submitted process > POREC:digest_align_annotate (172) Aug-17 04:03:33.123 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 181; name: POREC:digest_align_annotate (172); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e58c69408ba6025e785a1fc0f5b3ea] Aug-17 04:03:55.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 181; name: POREC:digest_align_annotate (172); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e58c69408ba6025e785a1fc0f5b3ea] Aug-17 04:03:55.531 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (172)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e58c69408ba6025e785a1fc0f5b3ea/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:03:55.532 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:03:55.578 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:03:55.579 [Task submitter] INFO nextflow.Session - [44/26b867] Submitted process > POREC:digest_align_annotate (174) Aug-17 04:04:30.709 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 182; name: POREC:digest_align_annotate (173); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/7b202c77a98a11c4886412c50457a9] ~> TaskHandler[id: 184; name: POREC:digest_align_annotate (175); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/384c788187cd47b15de714530ecc92] ~> TaskHandler[id: 185; name: POREC:digest_align_annotate (176); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/b0a294e60dc6f2065b4d1aea4c024a] ~> TaskHandler[id: 187; name: POREC:digest_align_annotate (178); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/80e4ef8c17b11ddda31fc6cb99ef3e] ~> TaskHandler[id: 186; name: POREC:digest_align_annotate (177); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d70a101bc5a3445bd6509ddd94aa35] ~> TaskHandler[id: 220; name: POREC:digest_align_annotate (211); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/a32d3df3ae847fd5e6efc05ffb7cbe] ~> TaskHandler[id: 188; name: POREC:digest_align_annotate (179); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/304d30eae9b0b2d5c4ffb337b7e45d] ~> TaskHandler[id: 189; name: POREC:digest_align_annotate (180); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/8e711acdecb4583d2da97b6fe4a03e] ~> TaskHandler[id: 190; name: POREC:digest_align_annotate (181); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ad2c414511824aa0081199bf1fa105] ~> TaskHandler[id: 191; name: POREC:digest_align_annotate (182); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f5e65e1017c4efa2665fe647c21493] .. remaining tasks omitted. Aug-17 04:05:21.225 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 183; name: POREC:digest_align_annotate (174); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/26b867828b9935db5be05a1c02d98f] Aug-17 04:05:21.226 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (174)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/26b867828b9935db5be05a1c02d98f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:05:21.228 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:05:21.261 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:05:21.279 [Task submitter] INFO nextflow.Session - [d9/7b202c] Submitted process > POREC:digest_align_annotate (173) Aug-17 04:06:45.729 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 182; name: POREC:digest_align_annotate (173); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/7b202c77a98a11c4886412c50457a9] Aug-17 04:06:45.729 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (173)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/7b202c77a98a11c4886412c50457a9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:06:45.730 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:06:45.757 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:06:45.757 [Task submitter] INFO nextflow.Session - [88/384c78] Submitted process > POREC:digest_align_annotate (175) Aug-17 04:08:09.022 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 184; name: POREC:digest_align_annotate (175); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/384c788187cd47b15de714530ecc92] Aug-17 04:08:09.023 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (175)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/384c788187cd47b15de714530ecc92/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:08:09.024 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:08:09.054 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:08:09.054 [Task submitter] INFO nextflow.Session - [27/b0a294] Submitted process > POREC:digest_align_annotate (176) Aug-17 04:08:33.147 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 185; name: POREC:digest_align_annotate (176); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/b0a294e60dc6f2065b4d1aea4c024a] Aug-17 04:09:31.325 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 187; name: POREC:digest_align_annotate (178); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/80e4ef8c17b11ddda31fc6cb99ef3e] ~> TaskHandler[id: 186; name: POREC:digest_align_annotate (177); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d70a101bc5a3445bd6509ddd94aa35] ~> TaskHandler[id: 220; name: POREC:digest_align_annotate (211); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/a32d3df3ae847fd5e6efc05ffb7cbe] ~> TaskHandler[id: 188; name: POREC:digest_align_annotate (179); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/304d30eae9b0b2d5c4ffb337b7e45d] ~> TaskHandler[id: 189; name: POREC:digest_align_annotate (180); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/8e711acdecb4583d2da97b6fe4a03e] ~> TaskHandler[id: 190; name: POREC:digest_align_annotate (181); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ad2c414511824aa0081199bf1fa105] ~> TaskHandler[id: 191; name: POREC:digest_align_annotate (182); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f5e65e1017c4efa2665fe647c21493] ~> TaskHandler[id: 193; name: POREC:digest_align_annotate (184); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/5a3b35cc5c7cf0de1efbcc5cce151a] ~> TaskHandler[id: 192; name: POREC:digest_align_annotate (183); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/7f1bf0e87d5c0fab9678f869bcea14] ~> TaskHandler[id: 194; name: POREC:digest_align_annotate (185); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/01c0f6dfb1b70de7f13c58cb94a77a] .. remaining tasks omitted. Aug-17 04:09:39.902 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 185; name: POREC:digest_align_annotate (176); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/b0a294e60dc6f2065b4d1aea4c024a] Aug-17 04:09:39.904 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (176)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/b0a294e60dc6f2065b4d1aea4c024a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:09:39.906 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:09:39.936 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:09:39.936 [Task submitter] INFO nextflow.Session - [e5/80e4ef] Submitted process > POREC:digest_align_annotate (178) Aug-17 04:11:17.924 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 187; name: POREC:digest_align_annotate (178); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/80e4ef8c17b11ddda31fc6cb99ef3e] Aug-17 04:11:17.954 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (178)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/80e4ef8c17b11ddda31fc6cb99ef3e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:11:17.955 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:11:18.037 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:11:18.038 [Task submitter] INFO nextflow.Session - [77/d70a10] Submitted process > POREC:digest_align_annotate (177) Aug-17 04:12:41.723 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 186; name: POREC:digest_align_annotate (177); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d70a101bc5a3445bd6509ddd94aa35] Aug-17 04:12:41.739 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (177)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d70a101bc5a3445bd6509ddd94aa35/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:12:41.740 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:12:41.847 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:12:41.847 [Task submitter] INFO nextflow.Session - [b4/a32d3d] Submitted process > POREC:digest_align_annotate (211) Aug-17 04:13:33.207 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 220; name: POREC:digest_align_annotate (211); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/a32d3df3ae847fd5e6efc05ffb7cbe] Aug-17 04:14:07.116 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 220; name: POREC:digest_align_annotate (211); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/a32d3df3ae847fd5e6efc05ffb7cbe] Aug-17 04:14:07.117 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (211)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/a32d3df3ae847fd5e6efc05ffb7cbe/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:14:07.118 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:14:07.212 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:14:07.212 [Task submitter] INFO nextflow.Session - [a5/304d30] Submitted process > POREC:digest_align_annotate (179) Aug-17 04:14:32.299 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 189; name: POREC:digest_align_annotate (180); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/8e711acdecb4583d2da97b6fe4a03e] ~> TaskHandler[id: 190; name: POREC:digest_align_annotate (181); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ad2c414511824aa0081199bf1fa105] ~> TaskHandler[id: 191; name: POREC:digest_align_annotate (182); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f5e65e1017c4efa2665fe647c21493] ~> TaskHandler[id: 193; name: POREC:digest_align_annotate (184); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/5a3b35cc5c7cf0de1efbcc5cce151a] ~> TaskHandler[id: 192; name: POREC:digest_align_annotate (183); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/7f1bf0e87d5c0fab9678f869bcea14] ~> TaskHandler[id: 194; name: POREC:digest_align_annotate (185); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/01c0f6dfb1b70de7f13c58cb94a77a] ~> TaskHandler[id: 195; name: POREC:digest_align_annotate (186); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/fdda6e6f542b01305c6d24db6c9ebd] ~> TaskHandler[id: 197; name: POREC:digest_align_annotate (188); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/608325438c65004cafb12039331672] ~> TaskHandler[id: 198; name: POREC:digest_align_annotate (189); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/819439a351a07465846484824fa525] ~> TaskHandler[id: 199; name: POREC:digest_align_annotate (190); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/69ef5249a4f304fb8b6db646f768a4] .. remaining tasks omitted. Aug-17 04:15:34.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 188; name: POREC:digest_align_annotate (179); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/304d30eae9b0b2d5c4ffb337b7e45d] Aug-17 04:15:34.922 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (179)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/304d30eae9b0b2d5c4ffb337b7e45d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:15:34.935 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:15:34.985 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:15:34.985 [Task submitter] INFO nextflow.Session - [7b/8e711a] Submitted process > POREC:digest_align_annotate (180) Aug-17 04:17:04.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 189; name: POREC:digest_align_annotate (180); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/8e711acdecb4583d2da97b6fe4a03e] Aug-17 04:17:04.922 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (180)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/8e711acdecb4583d2da97b6fe4a03e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:17:04.923 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:17:04.944 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:17:04.944 [Task submitter] INFO nextflow.Session - [01/ad2c41] Submitted process > POREC:digest_align_annotate (181) Aug-17 04:18:33.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 190; name: POREC:digest_align_annotate (181); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ad2c414511824aa0081199bf1fa105] Aug-17 04:18:38.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 190; name: POREC:digest_align_annotate (181); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ad2c414511824aa0081199bf1fa105] Aug-17 04:18:38.245 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (181)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ad2c414511824aa0081199bf1fa105/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:18:38.246 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:18:38.292 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:18:38.292 [Task submitter] INFO nextflow.Session - [5f/4312e3] Submitted process > POREC:digest_align_annotate (777) Aug-17 04:19:32.474 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 191; name: POREC:digest_align_annotate (182); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f5e65e1017c4efa2665fe647c21493] ~> TaskHandler[id: 193; name: POREC:digest_align_annotate (184); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/5a3b35cc5c7cf0de1efbcc5cce151a] ~> TaskHandler[id: 192; name: POREC:digest_align_annotate (183); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/7f1bf0e87d5c0fab9678f869bcea14] ~> TaskHandler[id: 194; name: POREC:digest_align_annotate (185); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/01c0f6dfb1b70de7f13c58cb94a77a] ~> TaskHandler[id: 195; name: POREC:digest_align_annotate (186); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/fdda6e6f542b01305c6d24db6c9ebd] ~> TaskHandler[id: 197; name: POREC:digest_align_annotate (188); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/608325438c65004cafb12039331672] ~> TaskHandler[id: 198; name: POREC:digest_align_annotate (189); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/819439a351a07465846484824fa525] ~> TaskHandler[id: 199; name: POREC:digest_align_annotate (190); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/69ef5249a4f304fb8b6db646f768a4] ~> TaskHandler[id: 201; name: POREC:digest_align_annotate (192); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/587779aecfce59997a88a30e65d3b5] ~> TaskHandler[id: 200; name: POREC:digest_align_annotate (191); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/c29f6b2bb3cf94a7c5f4603cdfc74e] .. remaining tasks omitted. Aug-17 04:20:00.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 786; name: POREC:digest_align_annotate (777); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/4312e36db49f1d08dde07aa7f63ab8] Aug-17 04:20:00.199 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (777)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/4312e36db49f1d08dde07aa7f63ab8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:20:00.200 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:20:00.257 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:20:00.257 [Task submitter] INFO nextflow.Session - [b6/f5e65e] Submitted process > POREC:digest_align_annotate (182) Aug-17 04:21:24.595 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 191; name: POREC:digest_align_annotate (182); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f5e65e1017c4efa2665fe647c21493] Aug-17 04:21:24.598 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (182)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/f5e65e1017c4efa2665fe647c21493/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:21:24.600 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:21:24.668 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:21:24.668 [Task submitter] INFO nextflow.Session - [8f/5a3b35] Submitted process > POREC:digest_align_annotate (184) Aug-17 04:22:50.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 193; name: POREC:digest_align_annotate (184); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/5a3b35cc5c7cf0de1efbcc5cce151a] Aug-17 04:22:50.317 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (184)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/5a3b35cc5c7cf0de1efbcc5cce151a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:22:50.318 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:22:50.335 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:22:50.344 [Task submitter] INFO nextflow.Session - [fc/7f1bf0] Submitted process > POREC:digest_align_annotate (183) Aug-17 04:23:33.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 192; name: POREC:digest_align_annotate (183); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/7f1bf0e87d5c0fab9678f869bcea14] Aug-17 04:24:16.407 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 192; name: POREC:digest_align_annotate (183); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/7f1bf0e87d5c0fab9678f869bcea14] Aug-17 04:24:16.408 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (183)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/7f1bf0e87d5c0fab9678f869bcea14/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:24:16.410 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:24:16.493 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:24:16.494 [Task submitter] INFO nextflow.Session - [fb/01c0f6] Submitted process > POREC:digest_align_annotate (185) Aug-17 04:24:32.551 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 195; name: POREC:digest_align_annotate (186); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/fdda6e6f542b01305c6d24db6c9ebd] ~> TaskHandler[id: 197; name: POREC:digest_align_annotate (188); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/608325438c65004cafb12039331672] ~> TaskHandler[id: 198; name: POREC:digest_align_annotate (189); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/819439a351a07465846484824fa525] ~> TaskHandler[id: 199; name: POREC:digest_align_annotate (190); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/69ef5249a4f304fb8b6db646f768a4] ~> TaskHandler[id: 201; name: POREC:digest_align_annotate (192); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/587779aecfce59997a88a30e65d3b5] ~> TaskHandler[id: 200; name: POREC:digest_align_annotate (191); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/c29f6b2bb3cf94a7c5f4603cdfc74e] ~> TaskHandler[id: 202; name: POREC:digest_align_annotate (193); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/08f691faeb53b7bccd7c4491253e35] ~> TaskHandler[id: 204; name: POREC:digest_align_annotate (195); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/07102c25c0d3e5ef9d81a97644814f] ~> TaskHandler[id: 203; name: POREC:digest_align_annotate (194); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/280e3a88608e8a7afe3f2b702052b0] ~> TaskHandler[id: 205; name: POREC:digest_align_annotate (196); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f294298fd1ed3ee09b7d949019e8ca] .. remaining tasks omitted. Aug-17 04:25:38.625 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 194; name: POREC:digest_align_annotate (185); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/01c0f6dfb1b70de7f13c58cb94a77a] Aug-17 04:25:38.626 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (185)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/01c0f6dfb1b70de7f13c58cb94a77a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:25:38.651 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:25:38.658 [Task submitter] INFO nextflow.Session - [32/fdda6e] Submitted process > POREC:digest_align_annotate (186) Aug-17 04:25:38.659 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:27:04.764 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 195; name: POREC:digest_align_annotate (186); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/fdda6e6f542b01305c6d24db6c9ebd] Aug-17 04:27:04.766 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (186)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/fdda6e6f542b01305c6d24db6c9ebd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:27:04.768 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:27:04.825 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:27:04.826 [Task submitter] INFO nextflow.Session - [3b/608325] Submitted process > POREC:digest_align_annotate (188) Aug-17 04:28:30.593 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 197; name: POREC:digest_align_annotate (188); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/608325438c65004cafb12039331672] Aug-17 04:28:30.593 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (188)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/608325438c65004cafb12039331672/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:28:30.594 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:28:30.622 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:28:30.623 [Task submitter] INFO nextflow.Session - [a7/819439] Submitted process > POREC:digest_align_annotate (189) Aug-17 04:28:33.296 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 198; name: POREC:digest_align_annotate (189); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/819439a351a07465846484824fa525] Aug-17 04:29:32.819 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 199; name: POREC:digest_align_annotate (190); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/69ef5249a4f304fb8b6db646f768a4] ~> TaskHandler[id: 201; name: POREC:digest_align_annotate (192); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/587779aecfce59997a88a30e65d3b5] ~> TaskHandler[id: 200; name: POREC:digest_align_annotate (191); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/c29f6b2bb3cf94a7c5f4603cdfc74e] ~> TaskHandler[id: 202; name: POREC:digest_align_annotate (193); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/08f691faeb53b7bccd7c4491253e35] ~> TaskHandler[id: 204; name: POREC:digest_align_annotate (195); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/07102c25c0d3e5ef9d81a97644814f] ~> TaskHandler[id: 203; name: POREC:digest_align_annotate (194); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/280e3a88608e8a7afe3f2b702052b0] ~> TaskHandler[id: 205; name: POREC:digest_align_annotate (196); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f294298fd1ed3ee09b7d949019e8ca] ~> TaskHandler[id: 206; name: POREC:digest_align_annotate (197); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/88e9809ccd15db0d84b44334ae7057] ~> TaskHandler[id: 208; name: POREC:digest_align_annotate (199); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/cf39f2ae099559844ac890d87b2403] ~> TaskHandler[id: 209; name: POREC:digest_align_annotate (200); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e3a4ed9f4ae9a35492a9dba7e74516] .. remaining tasks omitted. Aug-17 04:30:01.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 198; name: POREC:digest_align_annotate (189); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/819439a351a07465846484824fa525] Aug-17 04:30:01.241 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (189)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/819439a351a07465846484824fa525/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:30:01.243 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:30:01.277 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:30:01.278 [Task submitter] INFO nextflow.Session - [fb/69ef52] Submitted process > POREC:digest_align_annotate (190) Aug-17 04:31:22.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 199; name: POREC:digest_align_annotate (190); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/69ef5249a4f304fb8b6db646f768a4] Aug-17 04:31:22.588 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (190)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/69ef5249a4f304fb8b6db646f768a4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:31:22.589 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:31:22.618 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:31:22.618 [Task submitter] INFO nextflow.Session - [71/587779] Submitted process > POREC:digest_align_annotate (192) Aug-17 04:33:00.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 201; name: POREC:digest_align_annotate (192); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/587779aecfce59997a88a30e65d3b5] Aug-17 04:33:00.638 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (192)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/587779aecfce59997a88a30e65d3b5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:33:00.652 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:33:00.660 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:33:00.660 [Task submitter] INFO nextflow.Session - [c8/c29f6b] Submitted process > POREC:digest_align_annotate (191) Aug-17 04:33:33.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 200; name: POREC:digest_align_annotate (191); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/c29f6b2bb3cf94a7c5f4603cdfc74e] Aug-17 04:34:29.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 200; name: POREC:digest_align_annotate (191); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/c29f6b2bb3cf94a7c5f4603cdfc74e] Aug-17 04:34:29.826 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (191)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/c29f6b2bb3cf94a7c5f4603cdfc74e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:34:29.828 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:34:29.846 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:34:29.846 [Task submitter] INFO nextflow.Session - [2a/08f691] Submitted process > POREC:digest_align_annotate (193) Aug-17 04:34:32.862 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 204; name: POREC:digest_align_annotate (195); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/07102c25c0d3e5ef9d81a97644814f] ~> TaskHandler[id: 203; name: POREC:digest_align_annotate (194); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/280e3a88608e8a7afe3f2b702052b0] ~> TaskHandler[id: 205; name: POREC:digest_align_annotate (196); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f294298fd1ed3ee09b7d949019e8ca] ~> TaskHandler[id: 206; name: POREC:digest_align_annotate (197); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/88e9809ccd15db0d84b44334ae7057] ~> TaskHandler[id: 208; name: POREC:digest_align_annotate (199); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/cf39f2ae099559844ac890d87b2403] ~> TaskHandler[id: 209; name: POREC:digest_align_annotate (200); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e3a4ed9f4ae9a35492a9dba7e74516] ~> TaskHandler[id: 207; name: POREC:digest_align_annotate (198); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/c10e228f047a6ed35f6e6716fae14f] ~> TaskHandler[id: 210; name: POREC:digest_align_annotate (201); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/40c02eea3047b5c2b322cc681aa662] ~> TaskHandler[id: 212; name: POREC:digest_align_annotate (203); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/cb3ea24d013c8a7ae1c2da346c5794] ~> TaskHandler[id: 211; name: POREC:digest_align_annotate (202); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/57e50be11ba564fe50d5ff43c5ece7] .. remaining tasks omitted. Aug-17 04:35:55.509 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 202; name: POREC:digest_align_annotate (193); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/08f691faeb53b7bccd7c4491253e35] Aug-17 04:35:55.523 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (193)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/08f691faeb53b7bccd7c4491253e35/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:35:55.524 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:35:55.543 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:35:55.543 [Task submitter] INFO nextflow.Session - [51/07102c] Submitted process > POREC:digest_align_annotate (195) Aug-17 04:37:29.960 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 204; name: POREC:digest_align_annotate (195); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/07102c25c0d3e5ef9d81a97644814f] Aug-17 04:37:29.962 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (195)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/07102c25c0d3e5ef9d81a97644814f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:37:29.964 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:37:29.969 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:37:29.970 [Task submitter] INFO nextflow.Session - [8d/280e3a] Submitted process > POREC:digest_align_annotate (194) Aug-17 04:38:33.426 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 203; name: POREC:digest_align_annotate (194); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/280e3a88608e8a7afe3f2b702052b0] Aug-17 04:38:57.393 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 203; name: POREC:digest_align_annotate (194); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/280e3a88608e8a7afe3f2b702052b0] Aug-17 04:38:57.394 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (194)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/280e3a88608e8a7afe3f2b702052b0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:38:57.395 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:38:57.446 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:38:57.446 [Task submitter] INFO nextflow.Session - [86/f29429] Submitted process > POREC:digest_align_annotate (196) Aug-17 04:39:33.568 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 206; name: POREC:digest_align_annotate (197); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/88e9809ccd15db0d84b44334ae7057] ~> TaskHandler[id: 208; name: POREC:digest_align_annotate (199); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/cf39f2ae099559844ac890d87b2403] ~> TaskHandler[id: 209; name: POREC:digest_align_annotate (200); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e3a4ed9f4ae9a35492a9dba7e74516] ~> TaskHandler[id: 207; name: POREC:digest_align_annotate (198); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/c10e228f047a6ed35f6e6716fae14f] ~> TaskHandler[id: 210; name: POREC:digest_align_annotate (201); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/40c02eea3047b5c2b322cc681aa662] ~> TaskHandler[id: 212; name: POREC:digest_align_annotate (203); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/cb3ea24d013c8a7ae1c2da346c5794] ~> TaskHandler[id: 211; name: POREC:digest_align_annotate (202); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/57e50be11ba564fe50d5ff43c5ece7] ~> TaskHandler[id: 213; name: POREC:digest_align_annotate (204); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f00a5a344e3246c909339d4f6a5340] ~> TaskHandler[id: 215; name: POREC:digest_align_annotate (206); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/1f6c982fe37f6e7a37aeb8daf35f66] ~> TaskHandler[id: 214; name: POREC:digest_align_annotate (205); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/5e2bd1f303e82aaa99b00f6c6ab888] .. remaining tasks omitted. Aug-17 04:40:41.105 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 205; name: POREC:digest_align_annotate (196); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f294298fd1ed3ee09b7d949019e8ca] Aug-17 04:40:41.107 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (196)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f294298fd1ed3ee09b7d949019e8ca/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:40:41.109 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:40:41.126 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:40:41.127 [Task submitter] INFO nextflow.Session - [55/88e980] Submitted process > POREC:digest_align_annotate (197) Aug-17 04:42:18.938 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 206; name: POREC:digest_align_annotate (197); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/88e9809ccd15db0d84b44334ae7057] Aug-17 04:42:18.939 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (197)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/88e9809ccd15db0d84b44334ae7057/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:42:18.940 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:42:18.953 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:42:18.953 [Task submitter] INFO nextflow.Session - [3c/cf39f2] Submitted process > POREC:digest_align_annotate (199) Aug-17 04:43:33.461 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 208; name: POREC:digest_align_annotate (199); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/cf39f2ae099559844ac890d87b2403] Aug-17 04:43:58.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 208; name: POREC:digest_align_annotate (199); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/cf39f2ae099559844ac890d87b2403] Aug-17 04:43:58.465 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (199)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/cf39f2ae099559844ac890d87b2403/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:43:58.466 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:43:58.490 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:43:58.491 [Task submitter] INFO nextflow.Session - [45/e3a4ed] Submitted process > POREC:digest_align_annotate (200) Aug-17 04:44:33.611 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 207; name: POREC:digest_align_annotate (198); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/c10e228f047a6ed35f6e6716fae14f] ~> TaskHandler[id: 210; name: POREC:digest_align_annotate (201); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/40c02eea3047b5c2b322cc681aa662] ~> TaskHandler[id: 212; name: POREC:digest_align_annotate (203); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/cb3ea24d013c8a7ae1c2da346c5794] ~> TaskHandler[id: 211; name: POREC:digest_align_annotate (202); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/57e50be11ba564fe50d5ff43c5ece7] ~> TaskHandler[id: 213; name: POREC:digest_align_annotate (204); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f00a5a344e3246c909339d4f6a5340] ~> TaskHandler[id: 215; name: POREC:digest_align_annotate (206); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/1f6c982fe37f6e7a37aeb8daf35f66] ~> TaskHandler[id: 214; name: POREC:digest_align_annotate (205); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/5e2bd1f303e82aaa99b00f6c6ab888] ~> TaskHandler[id: 217; name: POREC:digest_align_annotate (208); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/fad0ade4fab115c3ba9c68f980df67] ~> TaskHandler[id: 216; name: POREC:digest_align_annotate (207); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/ba0302c05ab136f20e483cde9e0de2] ~> TaskHandler[id: 219; name: POREC:digest_align_annotate (210); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c66e61cf2bd248bb3e55126d9d9d4d] .. remaining tasks omitted. Aug-17 04:45:34.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 209; name: POREC:digest_align_annotate (200); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e3a4ed9f4ae9a35492a9dba7e74516] Aug-17 04:45:34.203 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (200)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/e3a4ed9f4ae9a35492a9dba7e74516/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:45:34.204 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:45:34.237 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:45:34.237 [Task submitter] INFO nextflow.Session - [b4/c10e22] Submitted process > POREC:digest_align_annotate (198) Aug-17 04:47:11.335 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 207; name: POREC:digest_align_annotate (198); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/c10e228f047a6ed35f6e6716fae14f] Aug-17 04:47:11.336 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (198)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/c10e228f047a6ed35f6e6716fae14f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:47:11.337 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:47:11.359 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:47:11.359 [Task submitter] INFO nextflow.Session - [4c/40c02e] Submitted process > POREC:digest_align_annotate (201) Aug-17 04:48:33.548 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 210; name: POREC:digest_align_annotate (201); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/40c02eea3047b5c2b322cc681aa662] Aug-17 04:48:35.847 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 210; name: POREC:digest_align_annotate (201); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/40c02eea3047b5c2b322cc681aa662] Aug-17 04:48:35.849 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (201)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/40c02eea3047b5c2b322cc681aa662/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:48:35.850 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:48:35.883 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:48:35.884 [Task submitter] INFO nextflow.Session - [99/cb3ea2] Submitted process > POREC:digest_align_annotate (203) Aug-17 04:49:34.072 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 211; name: POREC:digest_align_annotate (202); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/57e50be11ba564fe50d5ff43c5ece7] ~> TaskHandler[id: 213; name: POREC:digest_align_annotate (204); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f00a5a344e3246c909339d4f6a5340] ~> TaskHandler[id: 215; name: POREC:digest_align_annotate (206); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/1f6c982fe37f6e7a37aeb8daf35f66] ~> TaskHandler[id: 214; name: POREC:digest_align_annotate (205); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/5e2bd1f303e82aaa99b00f6c6ab888] ~> TaskHandler[id: 217; name: POREC:digest_align_annotate (208); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/fad0ade4fab115c3ba9c68f980df67] ~> TaskHandler[id: 216; name: POREC:digest_align_annotate (207); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/ba0302c05ab136f20e483cde9e0de2] ~> TaskHandler[id: 219; name: POREC:digest_align_annotate (210); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c66e61cf2bd248bb3e55126d9d9d4d] ~> TaskHandler[id: 218; name: POREC:digest_align_annotate (209); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/1b8665ac52b75b33f18f279b2bc3c4] ~> TaskHandler[id: 221; name: POREC:digest_align_annotate (212); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/0a282b3f92a3288c4be83b872cea91] ~> TaskHandler[id: 223; name: POREC:digest_align_annotate (214); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/31d5a80fcbfbbe2144e8372cfe54c9] .. remaining tasks omitted. Aug-17 04:50:01.081 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 212; name: POREC:digest_align_annotate (203); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/cb3ea24d013c8a7ae1c2da346c5794] Aug-17 04:50:01.082 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (203)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/cb3ea24d013c8a7ae1c2da346c5794/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:50:01.083 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:50:01.108 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:50:01.109 [Task submitter] INFO nextflow.Session - [97/57e50b] Submitted process > POREC:digest_align_annotate (202) Aug-17 04:51:27.008 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 211; name: POREC:digest_align_annotate (202); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/57e50be11ba564fe50d5ff43c5ece7] Aug-17 04:51:27.009 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (202)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/57e50be11ba564fe50d5ff43c5ece7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:51:27.009 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:51:27.036 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:51:27.036 [Task submitter] INFO nextflow.Session - [62/f00a5a] Submitted process > POREC:digest_align_annotate (204) Aug-17 04:52:53.994 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 213; name: POREC:digest_align_annotate (204); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f00a5a344e3246c909339d4f6a5340] Aug-17 04:52:53.996 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (204)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f00a5a344e3246c909339d4f6a5340/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:52:53.998 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:52:54.024 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:52:54.025 [Task submitter] INFO nextflow.Session - [d3/1f6c98] Submitted process > POREC:digest_align_annotate (206) Aug-17 04:53:33.588 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 215; name: POREC:digest_align_annotate (206); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/1f6c982fe37f6e7a37aeb8daf35f66] Aug-17 04:54:19.656 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 215; name: POREC:digest_align_annotate (206); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/1f6c982fe37f6e7a37aeb8daf35f66] Aug-17 04:54:19.658 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (206)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/1f6c982fe37f6e7a37aeb8daf35f66/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:54:19.660 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:54:19.684 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:54:19.685 [Task submitter] INFO nextflow.Session - [03/5e2bd1] Submitted process > POREC:digest_align_annotate (205) Aug-17 04:54:34.736 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 217; name: POREC:digest_align_annotate (208); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/fad0ade4fab115c3ba9c68f980df67] ~> TaskHandler[id: 216; name: POREC:digest_align_annotate (207); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/ba0302c05ab136f20e483cde9e0de2] ~> TaskHandler[id: 219; name: POREC:digest_align_annotate (210); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c66e61cf2bd248bb3e55126d9d9d4d] ~> TaskHandler[id: 218; name: POREC:digest_align_annotate (209); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/1b8665ac52b75b33f18f279b2bc3c4] ~> TaskHandler[id: 221; name: POREC:digest_align_annotate (212); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/0a282b3f92a3288c4be83b872cea91] ~> TaskHandler[id: 223; name: POREC:digest_align_annotate (214); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/31d5a80fcbfbbe2144e8372cfe54c9] ~> TaskHandler[id: 224; name: POREC:digest_align_annotate (215); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/bee4b207db3d9538fcd5a3999e3120] ~> TaskHandler[id: 225; name: POREC:digest_align_annotate (216); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/d932d02c49255aa91f89425c16c939] ~> TaskHandler[id: 222; name: POREC:digest_align_annotate (213); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/cd478c9d010e3ff553445db93155c1] ~> TaskHandler[id: 226; name: POREC:digest_align_annotate (217); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/57d928a2e1492b44082abbaba8b604] .. remaining tasks omitted. Aug-17 04:55:45.098 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 214; name: POREC:digest_align_annotate (205); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/5e2bd1f303e82aaa99b00f6c6ab888] Aug-17 04:55:45.099 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (205)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/5e2bd1f303e82aaa99b00f6c6ab888/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:55:45.105 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:55:45.130 [Task submitter] INFO nextflow.Session - [6f/fad0ad] Submitted process > POREC:digest_align_annotate (208) Aug-17 04:55:45.131 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:57:09.623 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 217; name: POREC:digest_align_annotate (208); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/fad0ade4fab115c3ba9c68f980df67] Aug-17 04:57:09.624 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (208)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/fad0ade4fab115c3ba9c68f980df67/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:57:09.625 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:57:09.631 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:57:09.631 [Task submitter] INFO nextflow.Session - [04/ba0302] Submitted process > POREC:digest_align_annotate (207) Aug-17 04:58:33.623 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 216; name: POREC:digest_align_annotate (207); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/ba0302c05ab136f20e483cde9e0de2] Aug-17 04:58:38.028 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 216; name: POREC:digest_align_annotate (207); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/ba0302c05ab136f20e483cde9e0de2] Aug-17 04:58:38.030 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (207)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/ba0302c05ab136f20e483cde9e0de2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 04:58:38.031 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 04:58:38.060 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 04:58:38.061 [Task submitter] INFO nextflow.Session - [98/c66e61] Submitted process > POREC:digest_align_annotate (210) Aug-17 04:59:35.251 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 218; name: POREC:digest_align_annotate (209); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/1b8665ac52b75b33f18f279b2bc3c4] ~> TaskHandler[id: 221; name: POREC:digest_align_annotate (212); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/0a282b3f92a3288c4be83b872cea91] ~> TaskHandler[id: 223; name: POREC:digest_align_annotate (214); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/31d5a80fcbfbbe2144e8372cfe54c9] ~> TaskHandler[id: 224; name: POREC:digest_align_annotate (215); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/bee4b207db3d9538fcd5a3999e3120] ~> TaskHandler[id: 225; name: POREC:digest_align_annotate (216); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/d932d02c49255aa91f89425c16c939] ~> TaskHandler[id: 222; name: POREC:digest_align_annotate (213); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/cd478c9d010e3ff553445db93155c1] ~> TaskHandler[id: 226; name: POREC:digest_align_annotate (217); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/57d928a2e1492b44082abbaba8b604] ~> TaskHandler[id: 229; name: POREC:digest_align_annotate (220); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8dfbfe54e8dd43aae5d09d82b6b992] ~> TaskHandler[id: 227; name: POREC:digest_align_annotate (218); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/c87ef116d88e0a6f8e4893138c0369] ~> TaskHandler[id: 260; name: POREC:digest_align_annotate (251); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/8e29762cf7c9704e36c445b9ca8193] .. remaining tasks omitted. Aug-17 05:00:03.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 219; name: POREC:digest_align_annotate (210); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c66e61cf2bd248bb3e55126d9d9d4d] Aug-17 05:00:03.230 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (210)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c66e61cf2bd248bb3e55126d9d9d4d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:00:03.231 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:00:03.270 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:00:03.270 [Task submitter] INFO nextflow.Session - [7b/1b8665] Submitted process > POREC:digest_align_annotate (209) Aug-17 05:01:28.379 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 218; name: POREC:digest_align_annotate (209); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/1b8665ac52b75b33f18f279b2bc3c4] Aug-17 05:01:28.381 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (209)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/1b8665ac52b75b33f18f279b2bc3c4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:01:28.383 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:01:28.406 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:01:28.407 [Task submitter] INFO nextflow.Session - [a7/0a282b] Submitted process > POREC:digest_align_annotate (212) Aug-17 05:02:50.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 221; name: POREC:digest_align_annotate (212); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/0a282b3f92a3288c4be83b872cea91] Aug-17 05:02:50.844 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (212)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/0a282b3f92a3288c4be83b872cea91/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:02:50.845 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:02:50.880 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:02:50.880 [Task submitter] INFO nextflow.Session - [36/31d5a8] Submitted process > POREC:digest_align_annotate (214) Aug-17 05:03:33.701 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 223; name: POREC:digest_align_annotate (214); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/31d5a80fcbfbbe2144e8372cfe54c9] Aug-17 05:04:17.242 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 223; name: POREC:digest_align_annotate (214); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/31d5a80fcbfbbe2144e8372cfe54c9] Aug-17 05:04:17.244 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (214)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/31d5a80fcbfbbe2144e8372cfe54c9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:04:17.245 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:04:17.285 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:04:17.285 [Task submitter] INFO nextflow.Session - [44/bee4b2] Submitted process > POREC:digest_align_annotate (215) Aug-17 05:04:35.346 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 225; name: POREC:digest_align_annotate (216); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/d932d02c49255aa91f89425c16c939] ~> TaskHandler[id: 222; name: POREC:digest_align_annotate (213); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/cd478c9d010e3ff553445db93155c1] ~> TaskHandler[id: 226; name: POREC:digest_align_annotate (217); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/57d928a2e1492b44082abbaba8b604] ~> TaskHandler[id: 229; name: POREC:digest_align_annotate (220); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8dfbfe54e8dd43aae5d09d82b6b992] ~> TaskHandler[id: 227; name: POREC:digest_align_annotate (218); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/c87ef116d88e0a6f8e4893138c0369] ~> TaskHandler[id: 260; name: POREC:digest_align_annotate (251); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/8e29762cf7c9704e36c445b9ca8193] ~> TaskHandler[id: 228; name: POREC:digest_align_annotate (219); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/3bd910fd3069a31dad4554c1ba050b] ~> TaskHandler[id: 230; name: POREC:digest_align_annotate (221); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/21107b407ae3232e0b8c1ed22d7f2c] ~> TaskHandler[id: 231; name: POREC:digest_align_annotate (222); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/c57ed71c53605766ffefc536cdedec] ~> TaskHandler[id: 233; name: POREC:digest_align_annotate (224); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/040119e3d8a2b5cb7c3887ccec3977] .. remaining tasks omitted. Aug-17 05:05:42.579 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 224; name: POREC:digest_align_annotate (215); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/bee4b207db3d9538fcd5a3999e3120] Aug-17 05:05:42.606 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (215)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/bee4b207db3d9538fcd5a3999e3120/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:05:42.607 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:05:42.630 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:05:42.630 [Task submitter] INFO nextflow.Session - [6f/d932d0] Submitted process > POREC:digest_align_annotate (216) Aug-17 05:07:11.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 225; name: POREC:digest_align_annotate (216); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/d932d02c49255aa91f89425c16c939] Aug-17 05:07:11.561 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (216)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/d932d02c49255aa91f89425c16c939/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:07:11.562 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:07:11.583 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:07:11.583 [Task submitter] INFO nextflow.Session - [e5/cd478c] Submitted process > POREC:digest_align_annotate (213) Aug-17 05:08:33.765 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 222; name: POREC:digest_align_annotate (213); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/cd478c9d010e3ff553445db93155c1] Aug-17 05:08:35.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 222; name: POREC:digest_align_annotate (213); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/cd478c9d010e3ff553445db93155c1] Aug-17 05:08:35.772 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (213)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/cd478c9d010e3ff553445db93155c1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:08:35.774 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:08:35.804 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:08:35.805 [Task submitter] INFO nextflow.Session - [83/57d928] Submitted process > POREC:digest_align_annotate (217) Aug-17 05:09:36.001 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 229; name: POREC:digest_align_annotate (220); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8dfbfe54e8dd43aae5d09d82b6b992] ~> TaskHandler[id: 227; name: POREC:digest_align_annotate (218); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/c87ef116d88e0a6f8e4893138c0369] ~> TaskHandler[id: 260; name: POREC:digest_align_annotate (251); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/8e29762cf7c9704e36c445b9ca8193] ~> TaskHandler[id: 228; name: POREC:digest_align_annotate (219); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/3bd910fd3069a31dad4554c1ba050b] ~> TaskHandler[id: 230; name: POREC:digest_align_annotate (221); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/21107b407ae3232e0b8c1ed22d7f2c] ~> TaskHandler[id: 231; name: POREC:digest_align_annotate (222); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/c57ed71c53605766ffefc536cdedec] ~> TaskHandler[id: 233; name: POREC:digest_align_annotate (224); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/040119e3d8a2b5cb7c3887ccec3977] ~> TaskHandler[id: 232; name: POREC:digest_align_annotate (223); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/7c74f20edb94d18168b8c5b12cdfb4] ~> TaskHandler[id: 234; name: POREC:digest_align_annotate (225); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/3e55d11efba7170764594ca494e3e3] ~> TaskHandler[id: 235; name: POREC:digest_align_annotate (226); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/b46ab0b4cdb59cbb0856d24c5a9494] .. remaining tasks omitted. Aug-17 05:10:01.651 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 226; name: POREC:digest_align_annotate (217); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/57d928a2e1492b44082abbaba8b604] Aug-17 05:10:01.653 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (217)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/57d928a2e1492b44082abbaba8b604/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:10:01.653 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:10:01.686 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:10:01.731 [Task submitter] INFO nextflow.Session - [5c/8dfbfe] Submitted process > POREC:digest_align_annotate (220) Aug-17 05:11:23.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 229; name: POREC:digest_align_annotate (220); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8dfbfe54e8dd43aae5d09d82b6b992] Aug-17 05:11:23.313 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (220)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8dfbfe54e8dd43aae5d09d82b6b992/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:11:23.313 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:11:23.340 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:11:23.340 [Task submitter] INFO nextflow.Session - [93/c87ef1] Submitted process > POREC:digest_align_annotate (218) Aug-17 05:12:48.183 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 227; name: POREC:digest_align_annotate (218); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/c87ef116d88e0a6f8e4893138c0369] Aug-17 05:12:48.185 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (218)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/c87ef116d88e0a6f8e4893138c0369/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:12:48.201 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:12:48.209 [Task submitter] INFO nextflow.Session - [96/8e2976] Submitted process > POREC:digest_align_annotate (251) Aug-17 05:12:48.210 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:13:33.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 260; name: POREC:digest_align_annotate (251); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/8e29762cf7c9704e36c445b9ca8193] Aug-17 05:14:11.211 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 260; name: POREC:digest_align_annotate (251); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/8e29762cf7c9704e36c445b9ca8193] Aug-17 05:14:11.212 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (251)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/8e29762cf7c9704e36c445b9ca8193/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:14:11.213 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:14:11.308 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:14:11.308 [Task submitter] INFO nextflow.Session - [be/3bd910] Submitted process > POREC:digest_align_annotate (219) Aug-17 05:14:36.394 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 230; name: POREC:digest_align_annotate (221); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/21107b407ae3232e0b8c1ed22d7f2c] ~> TaskHandler[id: 231; name: POREC:digest_align_annotate (222); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/c57ed71c53605766ffefc536cdedec] ~> TaskHandler[id: 233; name: POREC:digest_align_annotate (224); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/040119e3d8a2b5cb7c3887ccec3977] ~> TaskHandler[id: 232; name: POREC:digest_align_annotate (223); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/7c74f20edb94d18168b8c5b12cdfb4] ~> TaskHandler[id: 234; name: POREC:digest_align_annotate (225); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/3e55d11efba7170764594ca494e3e3] ~> TaskHandler[id: 235; name: POREC:digest_align_annotate (226); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/b46ab0b4cdb59cbb0856d24c5a9494] ~> TaskHandler[id: 237; name: POREC:digest_align_annotate (228); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/1cba5303755619320955faab2e03a8] ~> TaskHandler[id: 238; name: POREC:digest_align_annotate (229); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/33882c9a839bcc8f05457fa63821d7] ~> TaskHandler[id: 239; name: POREC:digest_align_annotate (230); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/971be7f0da7550e12ae8cfbb17bc56] ~> TaskHandler[id: 236; name: POREC:digest_align_annotate (227); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/0a4268f47587c3bed42c15a61601ad] .. remaining tasks omitted. Aug-17 05:15:36.020 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 228; name: POREC:digest_align_annotate (219); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/3bd910fd3069a31dad4554c1ba050b] Aug-17 05:15:36.021 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (219)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/3bd910fd3069a31dad4554c1ba050b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:15:36.022 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:15:36.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:15:36.072 [Task submitter] INFO nextflow.Session - [35/21107b] Submitted process > POREC:digest_align_annotate (221) Aug-17 05:17:02.648 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 230; name: POREC:digest_align_annotate (221); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/21107b407ae3232e0b8c1ed22d7f2c] Aug-17 05:17:02.650 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (221)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/21107b407ae3232e0b8c1ed22d7f2c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:17:02.651 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:17:02.681 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:17:02.681 [Task submitter] INFO nextflow.Session - [f6/c57ed7] Submitted process > POREC:digest_align_annotate (222) Aug-17 05:18:26.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 231; name: POREC:digest_align_annotate (222); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/c57ed71c53605766ffefc536cdedec] Aug-17 05:18:26.701 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (222)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/c57ed71c53605766ffefc536cdedec/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:18:26.702 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:18:26.739 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:18:26.739 [Task submitter] INFO nextflow.Session - [d1/040119] Submitted process > POREC:digest_align_annotate (224) Aug-17 05:18:33.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 233; name: POREC:digest_align_annotate (224); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/040119e3d8a2b5cb7c3887ccec3977] Aug-17 05:19:36.963 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 232; name: POREC:digest_align_annotate (223); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/7c74f20edb94d18168b8c5b12cdfb4] ~> TaskHandler[id: 234; name: POREC:digest_align_annotate (225); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/3e55d11efba7170764594ca494e3e3] ~> TaskHandler[id: 235; name: POREC:digest_align_annotate (226); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/b46ab0b4cdb59cbb0856d24c5a9494] ~> TaskHandler[id: 237; name: POREC:digest_align_annotate (228); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/1cba5303755619320955faab2e03a8] ~> TaskHandler[id: 238; name: POREC:digest_align_annotate (229); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/33882c9a839bcc8f05457fa63821d7] ~> TaskHandler[id: 239; name: POREC:digest_align_annotate (230); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/971be7f0da7550e12ae8cfbb17bc56] ~> TaskHandler[id: 236; name: POREC:digest_align_annotate (227); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/0a4268f47587c3bed42c15a61601ad] ~> TaskHandler[id: 240; name: POREC:digest_align_annotate (231); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/db279ece5173a9cb30daa14e61b709] ~> TaskHandler[id: 241; name: POREC:digest_align_annotate (232); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/81be90cdb70188bfda65b94c9bc62a] ~> TaskHandler[id: 242; name: POREC:digest_align_annotate (233); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/0b02988ec92a49a4068e3d8d99dce1] .. remaining tasks omitted. Aug-17 05:19:49.973 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 233; name: POREC:digest_align_annotate (224); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/040119e3d8a2b5cb7c3887ccec3977] Aug-17 05:19:49.974 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (224)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/040119e3d8a2b5cb7c3887ccec3977/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:19:49.975 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:19:49.994 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:19:49.995 [Task submitter] INFO nextflow.Session - [45/7c74f2] Submitted process > POREC:digest_align_annotate (223) Aug-17 05:21:14.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 232; name: POREC:digest_align_annotate (223); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/7c74f20edb94d18168b8c5b12cdfb4] Aug-17 05:21:14.694 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (223)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/7c74f20edb94d18168b8c5b12cdfb4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:21:14.695 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:21:14.756 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:21:14.757 [Task submitter] INFO nextflow.Session - [70/3e55d1] Submitted process > POREC:digest_align_annotate (225) Aug-17 05:22:39.988 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 234; name: POREC:digest_align_annotate (225); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/3e55d11efba7170764594ca494e3e3] Aug-17 05:22:40.001 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (225)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/3e55d11efba7170764594ca494e3e3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:22:40.002 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:22:40.032 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:22:40.032 [Task submitter] INFO nextflow.Session - [74/b46ab0] Submitted process > POREC:digest_align_annotate (226) Aug-17 05:23:33.954 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 235; name: POREC:digest_align_annotate (226); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/b46ab0b4cdb59cbb0856d24c5a9494] Aug-17 05:24:03.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 235; name: POREC:digest_align_annotate (226); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/b46ab0b4cdb59cbb0856d24c5a9494] Aug-17 05:24:03.234 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (226)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/b46ab0b4cdb59cbb0856d24c5a9494/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:24:03.236 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:24:03.251 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:24:03.252 [Task submitter] INFO nextflow.Session - [ef/1cba53] Submitted process > POREC:digest_align_annotate (228) Aug-17 05:24:37.361 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 238; name: POREC:digest_align_annotate (229); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/33882c9a839bcc8f05457fa63821d7] ~> TaskHandler[id: 239; name: POREC:digest_align_annotate (230); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/971be7f0da7550e12ae8cfbb17bc56] ~> TaskHandler[id: 236; name: POREC:digest_align_annotate (227); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/0a4268f47587c3bed42c15a61601ad] ~> TaskHandler[id: 240; name: POREC:digest_align_annotate (231); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/db279ece5173a9cb30daa14e61b709] ~> TaskHandler[id: 241; name: POREC:digest_align_annotate (232); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/81be90cdb70188bfda65b94c9bc62a] ~> TaskHandler[id: 242; name: POREC:digest_align_annotate (233); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/0b02988ec92a49a4068e3d8d99dce1] ~> TaskHandler[id: 245; name: POREC:digest_align_annotate (236); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/7ab63c20daf2601f0ba6615b71e55d] ~> TaskHandler[id: 274; name: POREC:digest_align_annotate (265); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/9d7691ee593d43bd6236a5cf4a5c1c] ~> TaskHandler[id: 244; name: POREC:digest_align_annotate (235); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/1d679394f7213030ef75182588439e] ~> TaskHandler[id: 278; name: POREC:digest_align_annotate (269); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/e85fe17ded2cd821a543b119fe9823] .. remaining tasks omitted. Aug-17 05:25:26.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 237; name: POREC:digest_align_annotate (228); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/1cba5303755619320955faab2e03a8] Aug-17 05:25:26.094 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (228)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/1cba5303755619320955faab2e03a8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:25:26.095 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:25:26.171 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:25:26.172 [Task submitter] INFO nextflow.Session - [7b/33882c] Submitted process > POREC:digest_align_annotate (229) Aug-17 05:26:50.887 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 238; name: POREC:digest_align_annotate (229); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/33882c9a839bcc8f05457fa63821d7] Aug-17 05:26:50.889 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (229)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/33882c9a839bcc8f05457fa63821d7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:26:50.890 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:26:50.916 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:26:50.916 [Task submitter] INFO nextflow.Session - [51/971be7] Submitted process > POREC:digest_align_annotate (230) Aug-17 05:28:15.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 239; name: POREC:digest_align_annotate (230); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/971be7f0da7550e12ae8cfbb17bc56] Aug-17 05:28:15.712 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (230)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/971be7f0da7550e12ae8cfbb17bc56/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:28:15.712 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:28:15.728 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:28:15.729 [Task submitter] INFO nextflow.Session - [27/0a4268] Submitted process > POREC:digest_align_annotate (227) Aug-17 05:28:34.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 236; name: POREC:digest_align_annotate (227); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/0a4268f47587c3bed42c15a61601ad] Aug-17 05:29:37.984 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 240; name: POREC:digest_align_annotate (231); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/db279ece5173a9cb30daa14e61b709] ~> TaskHandler[id: 241; name: POREC:digest_align_annotate (232); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/81be90cdb70188bfda65b94c9bc62a] ~> TaskHandler[id: 242; name: POREC:digest_align_annotate (233); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/0b02988ec92a49a4068e3d8d99dce1] ~> TaskHandler[id: 245; name: POREC:digest_align_annotate (236); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/7ab63c20daf2601f0ba6615b71e55d] ~> TaskHandler[id: 274; name: POREC:digest_align_annotate (265); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/9d7691ee593d43bd6236a5cf4a5c1c] ~> TaskHandler[id: 244; name: POREC:digest_align_annotate (235); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/1d679394f7213030ef75182588439e] ~> TaskHandler[id: 278; name: POREC:digest_align_annotate (269); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/e85fe17ded2cd821a543b119fe9823] ~> TaskHandler[id: 243; name: POREC:digest_align_annotate (234); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/afbd0a96e220539f86eec0b0c283e5] ~> TaskHandler[id: 247; name: POREC:digest_align_annotate (238); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/3b19deb87f22b401595d5f3593262f] ~> TaskHandler[id: 248; name: POREC:digest_align_annotate (239); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/3fd48d6ae74c5c07316739c6803f65] .. remaining tasks omitted. Aug-17 05:29:40.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 236; name: POREC:digest_align_annotate (227); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/0a4268f47587c3bed42c15a61601ad] Aug-17 05:29:40.006 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (227)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/0a4268f47587c3bed42c15a61601ad/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:29:40.007 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:29:40.061 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:29:40.061 [Task submitter] INFO nextflow.Session - [4c/db279e] Submitted process > POREC:digest_align_annotate (231) Aug-17 05:31:02.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 240; name: POREC:digest_align_annotate (231); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/db279ece5173a9cb30daa14e61b709] Aug-17 05:31:02.045 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (231)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/db279ece5173a9cb30daa14e61b709/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:31:02.046 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:31:02.076 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:31:02.076 [Task submitter] INFO nextflow.Session - [44/81be90] Submitted process > POREC:digest_align_annotate (232) Aug-17 05:32:23.872 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 241; name: POREC:digest_align_annotate (232); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/81be90cdb70188bfda65b94c9bc62a] Aug-17 05:32:23.873 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (232)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/81be90cdb70188bfda65b94c9bc62a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:32:23.874 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:32:23.882 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:32:23.882 [Task submitter] INFO nextflow.Session - [ac/0b0298] Submitted process > POREC:digest_align_annotate (233) Aug-17 05:33:34.075 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 242; name: POREC:digest_align_annotate (233); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/0b02988ec92a49a4068e3d8d99dce1] Aug-17 05:33:47.082 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 242; name: POREC:digest_align_annotate (233); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/0b02988ec92a49a4068e3d8d99dce1] Aug-17 05:33:47.083 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (233)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/0b02988ec92a49a4068e3d8d99dce1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:33:47.084 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:33:47.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:33:47.119 [Task submitter] INFO nextflow.Session - [b4/7ab63c] Submitted process > POREC:digest_align_annotate (236) Aug-17 05:34:38.287 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 274; name: POREC:digest_align_annotate (265); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/9d7691ee593d43bd6236a5cf4a5c1c] ~> TaskHandler[id: 244; name: POREC:digest_align_annotate (235); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/1d679394f7213030ef75182588439e] ~> TaskHandler[id: 278; name: POREC:digest_align_annotate (269); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/e85fe17ded2cd821a543b119fe9823] ~> TaskHandler[id: 243; name: POREC:digest_align_annotate (234); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/afbd0a96e220539f86eec0b0c283e5] ~> TaskHandler[id: 247; name: POREC:digest_align_annotate (238); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/3b19deb87f22b401595d5f3593262f] ~> TaskHandler[id: 248; name: POREC:digest_align_annotate (239); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/3fd48d6ae74c5c07316739c6803f65] ~> TaskHandler[id: 246; name: POREC:digest_align_annotate (237); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/2d666bdbeb08a38cc51b3ac214f881] ~> TaskHandler[id: 249; name: POREC:digest_align_annotate (240); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/3931d0f4d3411ee5a7801635661473] ~> TaskHandler[id: 250; name: POREC:digest_align_annotate (241); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/144283d21129b0bd55e5d4a9b752e5] ~> TaskHandler[id: 251; name: POREC:digest_align_annotate (242); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/1892207b4f6c6170aa90bcb5015627] .. remaining tasks omitted. Aug-17 05:35:11.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 245; name: POREC:digest_align_annotate (236); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/7ab63c20daf2601f0ba6615b71e55d] Aug-17 05:35:11.721 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (236)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/7ab63c20daf2601f0ba6615b71e55d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:35:11.723 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:35:11.739 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:35:11.739 [Task submitter] INFO nextflow.Session - [6b/9d7691] Submitted process > POREC:digest_align_annotate (265) Aug-17 05:36:34.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 274; name: POREC:digest_align_annotate (265); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/9d7691ee593d43bd6236a5cf4a5c1c] Aug-17 05:36:34.596 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (265)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/9d7691ee593d43bd6236a5cf4a5c1c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:36:34.597 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:36:34.623 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:36:34.624 [Task submitter] INFO nextflow.Session - [0b/1d6793] Submitted process > POREC:digest_align_annotate (235) Aug-17 05:37:58.698 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 244; name: POREC:digest_align_annotate (235); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/1d679394f7213030ef75182588439e] Aug-17 05:37:58.699 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (235)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/1d679394f7213030ef75182588439e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:37:58.701 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:37:58.727 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:37:58.727 [Task submitter] INFO nextflow.Session - [62/e85fe1] Submitted process > POREC:digest_align_annotate (269) Aug-17 05:38:34.150 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 278; name: POREC:digest_align_annotate (269); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/e85fe17ded2cd821a543b119fe9823] Aug-17 05:39:21.191 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 278; name: POREC:digest_align_annotate (269); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/e85fe17ded2cd821a543b119fe9823] Aug-17 05:39:21.193 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (269)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/e85fe17ded2cd821a543b119fe9823/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:39:21.195 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:39:21.238 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:39:21.238 [Task submitter] INFO nextflow.Session - [f6/afbd0a] Submitted process > POREC:digest_align_annotate (234) Aug-17 05:39:38.297 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 247; name: POREC:digest_align_annotate (238); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/3b19deb87f22b401595d5f3593262f] ~> TaskHandler[id: 248; name: POREC:digest_align_annotate (239); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/3fd48d6ae74c5c07316739c6803f65] ~> TaskHandler[id: 246; name: POREC:digest_align_annotate (237); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/2d666bdbeb08a38cc51b3ac214f881] ~> TaskHandler[id: 249; name: POREC:digest_align_annotate (240); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/3931d0f4d3411ee5a7801635661473] ~> TaskHandler[id: 250; name: POREC:digest_align_annotate (241); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/144283d21129b0bd55e5d4a9b752e5] ~> TaskHandler[id: 251; name: POREC:digest_align_annotate (242); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/1892207b4f6c6170aa90bcb5015627] ~> TaskHandler[id: 253; name: POREC:digest_align_annotate (244); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/8ecc1f6bad5c855ec972a6576d0a76] ~> TaskHandler[id: 254; name: POREC:digest_align_annotate (245); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/03ee1e1f1b81394e72415e61a53786] ~> TaskHandler[id: 252; name: POREC:digest_align_annotate (243); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/195ee864377e2facdba5ab7ad5701a] ~> TaskHandler[id: 255; name: POREC:digest_align_annotate (246); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a435472c927c3159b4bf832112e3d3] .. remaining tasks omitted. Aug-17 05:40:43.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 243; name: POREC:digest_align_annotate (234); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/afbd0a96e220539f86eec0b0c283e5] Aug-17 05:40:43.659 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (234)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/afbd0a96e220539f86eec0b0c283e5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:40:43.660 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:40:43.690 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:40:43.690 [Task submitter] INFO nextflow.Session - [d4/3b19de] Submitted process > POREC:digest_align_annotate (238) Aug-17 05:42:06.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 247; name: POREC:digest_align_annotate (238); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/3b19deb87f22b401595d5f3593262f] Aug-17 05:42:06.345 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (238)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/3b19deb87f22b401595d5f3593262f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:42:06.346 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:42:06.396 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:42:06.397 [Task submitter] INFO nextflow.Session - [76/3fd48d] Submitted process > POREC:digest_align_annotate (239) Aug-17 05:43:34.152 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 248; name: POREC:digest_align_annotate (239); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/3fd48d6ae74c5c07316739c6803f65] Aug-17 05:43:34.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 248; name: POREC:digest_align_annotate (239); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/3fd48d6ae74c5c07316739c6803f65] Aug-17 05:43:34.596 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (239)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/3fd48d6ae74c5c07316739c6803f65/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:43:34.597 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:43:34.640 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:43:34.640 [Task submitter] INFO nextflow.Session - [1c/2d666b] Submitted process > POREC:digest_align_annotate (237) Aug-17 05:44:38.837 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 249; name: POREC:digest_align_annotate (240); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/3931d0f4d3411ee5a7801635661473] ~> TaskHandler[id: 250; name: POREC:digest_align_annotate (241); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/144283d21129b0bd55e5d4a9b752e5] ~> TaskHandler[id: 251; name: POREC:digest_align_annotate (242); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/1892207b4f6c6170aa90bcb5015627] ~> TaskHandler[id: 253; name: POREC:digest_align_annotate (244); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/8ecc1f6bad5c855ec972a6576d0a76] ~> TaskHandler[id: 254; name: POREC:digest_align_annotate (245); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/03ee1e1f1b81394e72415e61a53786] ~> TaskHandler[id: 252; name: POREC:digest_align_annotate (243); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/195ee864377e2facdba5ab7ad5701a] ~> TaskHandler[id: 255; name: POREC:digest_align_annotate (246); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a435472c927c3159b4bf832112e3d3] ~> TaskHandler[id: 257; name: POREC:digest_align_annotate (248); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/484a31502ba459598c199d9a9c9cc7] ~> TaskHandler[id: 258; name: POREC:digest_align_annotate (249); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/4e7668910cb0357da1d2d0fa92acaa] ~> TaskHandler[id: 256; name: POREC:digest_align_annotate (247); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/bdf705e6447fbb60c4c118a491d8c3] .. remaining tasks omitted. Aug-17 05:45:02.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 246; name: POREC:digest_align_annotate (237); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/2d666bdbeb08a38cc51b3ac214f881] Aug-17 05:45:02.651 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (237)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/2d666bdbeb08a38cc51b3ac214f881/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:45:02.652 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:45:02.680 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:45:02.680 [Task submitter] INFO nextflow.Session - [59/3931d0] Submitted process > POREC:digest_align_annotate (240) Aug-17 05:46:25.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 249; name: POREC:digest_align_annotate (240); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/3931d0f4d3411ee5a7801635661473] Aug-17 05:46:25.573 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (240)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/3931d0f4d3411ee5a7801635661473/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:46:25.575 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:46:25.627 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:46:25.627 [Task submitter] INFO nextflow.Session - [71/144283] Submitted process > POREC:digest_align_annotate (241) Aug-17 05:47:51.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 250; name: POREC:digest_align_annotate (241); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/144283d21129b0bd55e5d4a9b752e5] Aug-17 05:47:51.490 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (241)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/144283d21129b0bd55e5d4a9b752e5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:47:51.491 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:47:51.522 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:47:51.522 [Task submitter] INFO nextflow.Session - [63/189220] Submitted process > POREC:digest_align_annotate (242) Aug-17 05:48:34.242 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 251; name: POREC:digest_align_annotate (242); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/1892207b4f6c6170aa90bcb5015627] Aug-17 05:49:29.174 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 251; name: POREC:digest_align_annotate (242); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/1892207b4f6c6170aa90bcb5015627] Aug-17 05:49:29.177 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (242)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/1892207b4f6c6170aa90bcb5015627/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:49:29.178 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:49:29.201 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:49:29.202 [Task submitter] INFO nextflow.Session - [c2/8ecc1f] Submitted process > POREC:digest_align_annotate (244) Aug-17 05:49:39.241 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 254; name: POREC:digest_align_annotate (245); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/03ee1e1f1b81394e72415e61a53786] ~> TaskHandler[id: 252; name: POREC:digest_align_annotate (243); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/195ee864377e2facdba5ab7ad5701a] ~> TaskHandler[id: 255; name: POREC:digest_align_annotate (246); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a435472c927c3159b4bf832112e3d3] ~> TaskHandler[id: 257; name: POREC:digest_align_annotate (248); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/484a31502ba459598c199d9a9c9cc7] ~> TaskHandler[id: 258; name: POREC:digest_align_annotate (249); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/4e7668910cb0357da1d2d0fa92acaa] ~> TaskHandler[id: 256; name: POREC:digest_align_annotate (247); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/bdf705e6447fbb60c4c118a491d8c3] ~> TaskHandler[id: 259; name: POREC:digest_align_annotate (250); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/993159e80f0cac99614267f541b3cf] ~> TaskHandler[id: 263; name: POREC:digest_align_annotate (254); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ce57dbdafafacf97cc0e21636b4e51] ~> TaskHandler[id: 261; name: POREC:digest_align_annotate (252); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/9db651140748ad988b48b3d8b68dc7] ~> TaskHandler[id: 262; name: POREC:digest_align_annotate (253); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/b32303551cf7a6991ff5626a13f2e1] .. remaining tasks omitted. Aug-17 05:50:55.291 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 253; name: POREC:digest_align_annotate (244); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/8ecc1f6bad5c855ec972a6576d0a76] Aug-17 05:50:55.292 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (244)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/8ecc1f6bad5c855ec972a6576d0a76/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:50:55.298 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:50:55.319 [Task submitter] INFO nextflow.Session - [cb/03ee1e] Submitted process > POREC:digest_align_annotate (245) Aug-17 05:50:55.320 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:52:22.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 254; name: POREC:digest_align_annotate (245); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/03ee1e1f1b81394e72415e61a53786] Aug-17 05:52:22.268 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (245)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/03ee1e1f1b81394e72415e61a53786/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:52:22.268 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:52:22.290 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:52:22.290 [Task submitter] INFO nextflow.Session - [e7/195ee8] Submitted process > POREC:digest_align_annotate (243) Aug-17 05:53:34.252 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 252; name: POREC:digest_align_annotate (243); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/195ee864377e2facdba5ab7ad5701a] Aug-17 05:53:48.068 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 252; name: POREC:digest_align_annotate (243); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/195ee864377e2facdba5ab7ad5701a] Aug-17 05:53:48.069 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (243)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/195ee864377e2facdba5ab7ad5701a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:53:48.070 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:53:48.092 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:53:48.093 [Task submitter] INFO nextflow.Session - [62/a43547] Submitted process > POREC:digest_align_annotate (246) Aug-17 05:54:39.295 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 257; name: POREC:digest_align_annotate (248); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/484a31502ba459598c199d9a9c9cc7] ~> TaskHandler[id: 258; name: POREC:digest_align_annotate (249); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/4e7668910cb0357da1d2d0fa92acaa] ~> TaskHandler[id: 256; name: POREC:digest_align_annotate (247); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/bdf705e6447fbb60c4c118a491d8c3] ~> TaskHandler[id: 259; name: POREC:digest_align_annotate (250); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/993159e80f0cac99614267f541b3cf] ~> TaskHandler[id: 263; name: POREC:digest_align_annotate (254); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ce57dbdafafacf97cc0e21636b4e51] ~> TaskHandler[id: 261; name: POREC:digest_align_annotate (252); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/9db651140748ad988b48b3d8b68dc7] ~> TaskHandler[id: 262; name: POREC:digest_align_annotate (253); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/b32303551cf7a6991ff5626a13f2e1] ~> TaskHandler[id: 264; name: POREC:digest_align_annotate (255); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/e5df4018585856256eb1fbc99f7ede] ~> TaskHandler[id: 265; name: POREC:digest_align_annotate (256); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f1c4ce9892f5fb5f8bccf9bdf88128] ~> TaskHandler[id: 266; name: POREC:digest_align_annotate (257); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/17ccbe16916f5d9bb220ad7b5b4c9f] .. remaining tasks omitted. Aug-17 05:55:12.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 255; name: POREC:digest_align_annotate (246); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a435472c927c3159b4bf832112e3d3] Aug-17 05:55:12.663 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (246)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/a435472c927c3159b4bf832112e3d3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:55:12.664 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:55:12.705 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:55:12.706 [Task submitter] INFO nextflow.Session - [98/484a31] Submitted process > POREC:digest_align_annotate (248) Aug-17 05:56:31.574 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 257; name: POREC:digest_align_annotate (248); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/484a31502ba459598c199d9a9c9cc7] Aug-17 05:56:31.575 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (248)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/484a31502ba459598c199d9a9c9cc7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:56:31.576 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:56:31.615 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:56:31.615 [Task submitter] INFO nextflow.Session - [ce/4e7668] Submitted process > POREC:digest_align_annotate (249) Aug-17 05:57:54.169 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 258; name: POREC:digest_align_annotate (249); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/4e7668910cb0357da1d2d0fa92acaa] Aug-17 05:57:54.170 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (249)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/4e7668910cb0357da1d2d0fa92acaa/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:57:54.171 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:57:54.207 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:57:54.207 [Task submitter] INFO nextflow.Session - [4a/bdf705] Submitted process > POREC:digest_align_annotate (247) Aug-17 05:58:34.338 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 256; name: POREC:digest_align_annotate (247); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/bdf705e6447fbb60c4c118a491d8c3] Aug-17 05:59:18.914 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 256; name: POREC:digest_align_annotate (247); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/bdf705e6447fbb60c4c118a491d8c3] Aug-17 05:59:18.916 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (247)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/bdf705e6447fbb60c4c118a491d8c3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 05:59:18.918 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 05:59:18.945 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 05:59:18.945 [Task submitter] INFO nextflow.Session - [58/993159] Submitted process > POREC:digest_align_annotate (250) Aug-17 05:59:40.018 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 263; name: POREC:digest_align_annotate (254); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ce57dbdafafacf97cc0e21636b4e51] ~> TaskHandler[id: 261; name: POREC:digest_align_annotate (252); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/9db651140748ad988b48b3d8b68dc7] ~> TaskHandler[id: 262; name: POREC:digest_align_annotate (253); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/b32303551cf7a6991ff5626a13f2e1] ~> TaskHandler[id: 264; name: POREC:digest_align_annotate (255); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/e5df4018585856256eb1fbc99f7ede] ~> TaskHandler[id: 265; name: POREC:digest_align_annotate (256); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f1c4ce9892f5fb5f8bccf9bdf88128] ~> TaskHandler[id: 266; name: POREC:digest_align_annotate (257); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/17ccbe16916f5d9bb220ad7b5b4c9f] ~> TaskHandler[id: 267; name: POREC:digest_align_annotate (258); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/05369cb60b11f96d20c4efd23710a0] ~> TaskHandler[id: 269; name: POREC:digest_align_annotate (260); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/f99923f740fe2989bc667d1b5c9c75] ~> TaskHandler[id: 270; name: POREC:digest_align_annotate (261); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/ca47b246effe55fd8f5577a1cb6703] ~> TaskHandler[id: 268; name: POREC:digest_align_annotate (259); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/b1c9c0bb272c5d2037220603c00df3] .. remaining tasks omitted. Aug-17 06:00:54.205 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 259; name: POREC:digest_align_annotate (250); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/993159e80f0cac99614267f541b3cf] Aug-17 06:00:54.235 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (250)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/993159e80f0cac99614267f541b3cf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:00:54.237 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:00:54.279 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:00:54.279 [Task submitter] INFO nextflow.Session - [39/ce57db] Submitted process > POREC:digest_align_annotate (254) Aug-17 06:02:28.567 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 263; name: POREC:digest_align_annotate (254); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ce57dbdafafacf97cc0e21636b4e51] Aug-17 06:02:28.569 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (254)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ce57dbdafafacf97cc0e21636b4e51/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:02:28.572 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:02:28.595 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:02:28.595 [Task submitter] INFO nextflow.Session - [df/9db651] Submitted process > POREC:digest_align_annotate (252) Aug-17 06:03:34.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 261; name: POREC:digest_align_annotate (252); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/9db651140748ad988b48b3d8b68dc7] Aug-17 06:04:02.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 261; name: POREC:digest_align_annotate (252); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/9db651140748ad988b48b3d8b68dc7] Aug-17 06:04:02.721 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (252)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/9db651140748ad988b48b3d8b68dc7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:04:02.722 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:04:02.730 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:04:02.730 [Task submitter] INFO nextflow.Session - [48/b32303] Submitted process > POREC:digest_align_annotate (253) Aug-17 06:04:40.859 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 264; name: POREC:digest_align_annotate (255); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/e5df4018585856256eb1fbc99f7ede] ~> TaskHandler[id: 265; name: POREC:digest_align_annotate (256); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f1c4ce9892f5fb5f8bccf9bdf88128] ~> TaskHandler[id: 266; name: POREC:digest_align_annotate (257); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/17ccbe16916f5d9bb220ad7b5b4c9f] ~> TaskHandler[id: 267; name: POREC:digest_align_annotate (258); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/05369cb60b11f96d20c4efd23710a0] ~> TaskHandler[id: 269; name: POREC:digest_align_annotate (260); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/f99923f740fe2989bc667d1b5c9c75] ~> TaskHandler[id: 270; name: POREC:digest_align_annotate (261); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/ca47b246effe55fd8f5577a1cb6703] ~> TaskHandler[id: 268; name: POREC:digest_align_annotate (259); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/b1c9c0bb272c5d2037220603c00df3] ~> TaskHandler[id: 273; name: POREC:digest_align_annotate (264); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/8c7435051450f1a2ad7926318b485c] ~> TaskHandler[id: 271; name: POREC:digest_align_annotate (262); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4f061dff2f4b3c5a665c653571f7b1] ~> TaskHandler[id: 272; name: POREC:digest_align_annotate (263); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/18b1c2ce79468edf55f702e590f31a] .. remaining tasks omitted. Aug-17 06:05:28.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 262; name: POREC:digest_align_annotate (253); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/b32303551cf7a6991ff5626a13f2e1] Aug-17 06:05:28.603 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (253)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/b32303551cf7a6991ff5626a13f2e1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:05:28.605 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:05:28.679 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:05:28.679 [Task submitter] INFO nextflow.Session - [fd/e5df40] Submitted process > POREC:digest_align_annotate (255) Aug-17 06:07:11.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 264; name: POREC:digest_align_annotate (255); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/e5df4018585856256eb1fbc99f7ede] Aug-17 06:07:11.057 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (255)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/e5df4018585856256eb1fbc99f7ede/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:07:11.059 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:07:11.129 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:07:11.129 [Task submitter] INFO nextflow.Session - [73/f1c4ce] Submitted process > POREC:digest_align_annotate (256) Aug-17 06:08:34.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 265; name: POREC:digest_align_annotate (256); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f1c4ce9892f5fb5f8bccf9bdf88128] Aug-17 06:08:46.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 265; name: POREC:digest_align_annotate (256); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f1c4ce9892f5fb5f8bccf9bdf88128] Aug-17 06:08:47.013 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (256)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f1c4ce9892f5fb5f8bccf9bdf88128/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:08:47.015 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:08:47.044 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:08:47.044 [Task submitter] INFO nextflow.Session - [00/17ccbe] Submitted process > POREC:digest_align_annotate (257) Aug-17 06:09:41.235 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 267; name: POREC:digest_align_annotate (258); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/05369cb60b11f96d20c4efd23710a0] ~> TaskHandler[id: 269; name: POREC:digest_align_annotate (260); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/f99923f740fe2989bc667d1b5c9c75] ~> TaskHandler[id: 270; name: POREC:digest_align_annotate (261); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/ca47b246effe55fd8f5577a1cb6703] ~> TaskHandler[id: 268; name: POREC:digest_align_annotate (259); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/b1c9c0bb272c5d2037220603c00df3] ~> TaskHandler[id: 273; name: POREC:digest_align_annotate (264); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/8c7435051450f1a2ad7926318b485c] ~> TaskHandler[id: 271; name: POREC:digest_align_annotate (262); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4f061dff2f4b3c5a665c653571f7b1] ~> TaskHandler[id: 272; name: POREC:digest_align_annotate (263); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/18b1c2ce79468edf55f702e590f31a] ~> TaskHandler[id: 275; name: POREC:digest_align_annotate (266); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/d8c5552ff793cff583fcbeda4c9ec7] ~> TaskHandler[id: 277; name: POREC:digest_align_annotate (268); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/ece3ad170e602f24354261c8c509de] ~> TaskHandler[id: 276; name: POREC:digest_align_annotate (267); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/6f63c3cb6e77184875328c59875245] .. remaining tasks omitted. Aug-17 06:10:18.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 266; name: POREC:digest_align_annotate (257); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/17ccbe16916f5d9bb220ad7b5b4c9f] Aug-17 06:10:18.326 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (257)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/17ccbe16916f5d9bb220ad7b5b4c9f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:10:18.326 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:10:18.359 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:10:18.360 [Task submitter] INFO nextflow.Session - [22/05369c] Submitted process > POREC:digest_align_annotate (258) Aug-17 06:11:55.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 267; name: POREC:digest_align_annotate (258); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/05369cb60b11f96d20c4efd23710a0] Aug-17 06:11:55.444 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (258)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/05369cb60b11f96d20c4efd23710a0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:11:55.446 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:11:55.475 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:11:55.475 [Task submitter] INFO nextflow.Session - [26/f99923] Submitted process > POREC:digest_align_annotate (260) Aug-17 06:13:34.471 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 269; name: POREC:digest_align_annotate (260); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/f99923f740fe2989bc667d1b5c9c75] Aug-17 06:13:35.411 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 269; name: POREC:digest_align_annotate (260); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/f99923f740fe2989bc667d1b5c9c75] Aug-17 06:13:35.413 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (260)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/f99923f740fe2989bc667d1b5c9c75/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:13:35.415 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:13:35.443 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:13:35.443 [Task submitter] INFO nextflow.Session - [26/ca47b2] Submitted process > POREC:digest_align_annotate (261) Aug-17 06:14:41.659 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 268; name: POREC:digest_align_annotate (259); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/b1c9c0bb272c5d2037220603c00df3] ~> TaskHandler[id: 273; name: POREC:digest_align_annotate (264); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/8c7435051450f1a2ad7926318b485c] ~> TaskHandler[id: 271; name: POREC:digest_align_annotate (262); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4f061dff2f4b3c5a665c653571f7b1] ~> TaskHandler[id: 272; name: POREC:digest_align_annotate (263); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/18b1c2ce79468edf55f702e590f31a] ~> TaskHandler[id: 275; name: POREC:digest_align_annotate (266); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/d8c5552ff793cff583fcbeda4c9ec7] ~> TaskHandler[id: 277; name: POREC:digest_align_annotate (268); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/ece3ad170e602f24354261c8c509de] ~> TaskHandler[id: 276; name: POREC:digest_align_annotate (267); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/6f63c3cb6e77184875328c59875245] ~> TaskHandler[id: 279; name: POREC:digest_align_annotate (270); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/ff78f1214d39f1124857d2aed68749] ~> TaskHandler[id: 309; name: POREC:digest_align_annotate (300); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/59a7ec79d5499a498f93699c5be980] ~> TaskHandler[id: 280; name: POREC:digest_align_annotate (271); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/a0b8dda24c6c7de40f86fb8293d7c6] .. remaining tasks omitted. Aug-17 06:15:06.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 270; name: POREC:digest_align_annotate (261); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/ca47b246effe55fd8f5577a1cb6703] Aug-17 06:15:06.232 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (261)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/ca47b246effe55fd8f5577a1cb6703/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:15:06.233 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:15:06.249 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:15:06.250 [Task submitter] INFO nextflow.Session - [23/b1c9c0] Submitted process > POREC:digest_align_annotate (259) Aug-17 06:16:49.342 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 268; name: POREC:digest_align_annotate (259); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/b1c9c0bb272c5d2037220603c00df3] Aug-17 06:16:49.343 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (259)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/b1c9c0bb272c5d2037220603c00df3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:16:49.344 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:16:49.393 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:16:49.393 [Task submitter] INFO nextflow.Session - [e7/8c7435] Submitted process > POREC:digest_align_annotate (264) Aug-17 06:18:21.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 273; name: POREC:digest_align_annotate (264); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/8c7435051450f1a2ad7926318b485c] Aug-17 06:18:21.254 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (264)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/8c7435051450f1a2ad7926318b485c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:18:21.256 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:18:21.291 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:18:21.291 [Task submitter] INFO nextflow.Session - [27/4f061d] Submitted process > POREC:digest_align_annotate (262) Aug-17 06:18:34.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 271; name: POREC:digest_align_annotate (262); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4f061dff2f4b3c5a665c653571f7b1] Aug-17 06:19:42.548 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 272; name: POREC:digest_align_annotate (263); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/18b1c2ce79468edf55f702e590f31a] ~> TaskHandler[id: 275; name: POREC:digest_align_annotate (266); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/d8c5552ff793cff583fcbeda4c9ec7] ~> TaskHandler[id: 277; name: POREC:digest_align_annotate (268); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/ece3ad170e602f24354261c8c509de] ~> TaskHandler[id: 276; name: POREC:digest_align_annotate (267); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/6f63c3cb6e77184875328c59875245] ~> TaskHandler[id: 279; name: POREC:digest_align_annotate (270); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/ff78f1214d39f1124857d2aed68749] ~> TaskHandler[id: 309; name: POREC:digest_align_annotate (300); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/59a7ec79d5499a498f93699c5be980] ~> TaskHandler[id: 280; name: POREC:digest_align_annotate (271); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/a0b8dda24c6c7de40f86fb8293d7c6] ~> TaskHandler[id: 281; name: POREC:digest_align_annotate (272); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/da22f0e29f8a033dfe6c2fba69fa6c] ~> TaskHandler[id: 282; name: POREC:digest_align_annotate (273); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/6e7e9df400dffa7a6cabf024b10599] ~> TaskHandler[id: 283; name: POREC:digest_align_annotate (274); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/7b73cd8e9129e4a8e3bb05f2b59931] .. remaining tasks omitted. Aug-17 06:19:53.487 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 271; name: POREC:digest_align_annotate (262); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4f061dff2f4b3c5a665c653571f7b1] Aug-17 06:19:53.487 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (262)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4f061dff2f4b3c5a665c653571f7b1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:19:53.488 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:19:53.502 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:19:53.502 [Task submitter] INFO nextflow.Session - [d2/18b1c2] Submitted process > POREC:digest_align_annotate (263) Aug-17 06:21:18.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 272; name: POREC:digest_align_annotate (263); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/18b1c2ce79468edf55f702e590f31a] Aug-17 06:21:18.630 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (263)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/18b1c2ce79468edf55f702e590f31a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:21:18.631 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:21:18.636 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:21:18.652 [Task submitter] INFO nextflow.Session - [65/d8c555] Submitted process > POREC:digest_align_annotate (266) Aug-17 06:22:42.491 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 275; name: POREC:digest_align_annotate (266); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/d8c5552ff793cff583fcbeda4c9ec7] Aug-17 06:22:42.493 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (266)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/d8c5552ff793cff583fcbeda4c9ec7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:22:42.494 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:22:42.518 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:22:42.518 [Task submitter] INFO nextflow.Session - [57/ece3ad] Submitted process > POREC:digest_align_annotate (268) Aug-17 06:23:34.563 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 277; name: POREC:digest_align_annotate (268); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/ece3ad170e602f24354261c8c509de] Aug-17 06:24:06.471 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 277; name: POREC:digest_align_annotate (268); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/ece3ad170e602f24354261c8c509de] Aug-17 06:24:06.473 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (268)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/ece3ad170e602f24354261c8c509de/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:24:06.475 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:24:06.529 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:24:06.529 [Task submitter] INFO nextflow.Session - [36/6f63c3] Submitted process > POREC:digest_align_annotate (267) Aug-17 06:24:42.646 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 279; name: POREC:digest_align_annotate (270); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/ff78f1214d39f1124857d2aed68749] ~> TaskHandler[id: 309; name: POREC:digest_align_annotate (300); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/59a7ec79d5499a498f93699c5be980] ~> TaskHandler[id: 280; name: POREC:digest_align_annotate (271); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/a0b8dda24c6c7de40f86fb8293d7c6] ~> TaskHandler[id: 281; name: POREC:digest_align_annotate (272); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/da22f0e29f8a033dfe6c2fba69fa6c] ~> TaskHandler[id: 282; name: POREC:digest_align_annotate (273); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/6e7e9df400dffa7a6cabf024b10599] ~> TaskHandler[id: 283; name: POREC:digest_align_annotate (274); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/7b73cd8e9129e4a8e3bb05f2b59931] ~> TaskHandler[id: 285; name: POREC:digest_align_annotate (276); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/2b66db6e042d85dba0125653918efe] ~> TaskHandler[id: 286; name: POREC:digest_align_annotate (277); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/1a18aef363e7bc06b4ff810cdf5cb5] ~> TaskHandler[id: 284; name: POREC:digest_align_annotate (275); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/c61b8d33b5071b0160a2728dd819c8] ~> TaskHandler[id: 287; name: POREC:digest_align_annotate (278); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/29dca18d7809f668fb8a396ead4cf3] .. remaining tasks omitted. Aug-17 06:25:27.517 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 276; name: POREC:digest_align_annotate (267); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/6f63c3cb6e77184875328c59875245] Aug-17 06:25:27.518 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (267)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/6f63c3cb6e77184875328c59875245/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:25:27.519 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:25:27.554 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:25:27.554 [Task submitter] INFO nextflow.Session - [ba/ff78f1] Submitted process > POREC:digest_align_annotate (270) Aug-17 06:26:51.835 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 279; name: POREC:digest_align_annotate (270); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/ff78f1214d39f1124857d2aed68749] Aug-17 06:26:51.835 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (270)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/ff78f1214d39f1124857d2aed68749/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:26:51.836 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:26:51.884 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:26:51.884 [Task submitter] INFO nextflow.Session - [19/59a7ec] Submitted process > POREC:digest_align_annotate (300) Aug-17 06:28:19.614 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 309; name: POREC:digest_align_annotate (300); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/59a7ec79d5499a498f93699c5be980] Aug-17 06:28:19.615 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (300)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/59a7ec79d5499a498f93699c5be980/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:28:19.616 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:28:19.635 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:28:19.657 [Task submitter] INFO nextflow.Session - [97/a0b8dd] Submitted process > POREC:digest_align_annotate (271) Aug-17 06:28:34.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 280; name: POREC:digest_align_annotate (271); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/a0b8dda24c6c7de40f86fb8293d7c6] Aug-17 06:29:41.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 280; name: POREC:digest_align_annotate (271); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/a0b8dda24c6c7de40f86fb8293d7c6] Aug-17 06:29:41.432 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (271)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/a0b8dda24c6c7de40f86fb8293d7c6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:29:41.434 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:29:41.467 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:29:41.467 [Task submitter] INFO nextflow.Session - [64/da22f0] Submitted process > POREC:digest_align_annotate (272) Aug-17 06:29:43.483 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 282; name: POREC:digest_align_annotate (273); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/6e7e9df400dffa7a6cabf024b10599] ~> TaskHandler[id: 283; name: POREC:digest_align_annotate (274); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/7b73cd8e9129e4a8e3bb05f2b59931] ~> TaskHandler[id: 285; name: POREC:digest_align_annotate (276); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/2b66db6e042d85dba0125653918efe] ~> TaskHandler[id: 286; name: POREC:digest_align_annotate (277); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/1a18aef363e7bc06b4ff810cdf5cb5] ~> TaskHandler[id: 284; name: POREC:digest_align_annotate (275); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/c61b8d33b5071b0160a2728dd819c8] ~> TaskHandler[id: 287; name: POREC:digest_align_annotate (278); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/29dca18d7809f668fb8a396ead4cf3] ~> TaskHandler[id: 288; name: POREC:digest_align_annotate (279); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/6152487cfcdf70951669c57a82d931] ~> TaskHandler[id: 289; name: POREC:digest_align_annotate (280); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/7f430816b2ebb365b00b4894bf9cd3] ~> TaskHandler[id: 290; name: POREC:digest_align_annotate (281); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/c899091b9a6d7ca18abfd9dd589cf2] ~> TaskHandler[id: 291; name: POREC:digest_align_annotate (282); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/d7e9d48241b96e8fb02a09e73960a0] .. remaining tasks omitted. Aug-17 06:31:03.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 281; name: POREC:digest_align_annotate (272); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/da22f0e29f8a033dfe6c2fba69fa6c] Aug-17 06:31:03.727 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (272)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/da22f0e29f8a033dfe6c2fba69fa6c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:31:03.732 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:31:03.738 [Task submitter] INFO nextflow.Session - [81/6e7e9d] Submitted process > POREC:digest_align_annotate (273) Aug-17 06:31:03.738 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:32:28.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 282; name: POREC:digest_align_annotate (273); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/6e7e9df400dffa7a6cabf024b10599] Aug-17 06:32:28.337 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (273)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/6e7e9df400dffa7a6cabf024b10599/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:32:28.339 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:32:28.352 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:32:28.352 [Task submitter] INFO nextflow.Session - [43/7b73cd] Submitted process > POREC:digest_align_annotate (274) Aug-17 06:33:34.721 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 283; name: POREC:digest_align_annotate (274); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/7b73cd8e9129e4a8e3bb05f2b59931] Aug-17 06:33:57.038 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 283; name: POREC:digest_align_annotate (274); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/7b73cd8e9129e4a8e3bb05f2b59931] Aug-17 06:33:57.039 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (274)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/7b73cd8e9129e4a8e3bb05f2b59931/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:33:57.040 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:33:57.079 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:33:57.080 [Task submitter] INFO nextflow.Session - [3f/2b66db] Submitted process > POREC:digest_align_annotate (276) Aug-17 06:34:44.234 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 286; name: POREC:digest_align_annotate (277); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/1a18aef363e7bc06b4ff810cdf5cb5] ~> TaskHandler[id: 284; name: POREC:digest_align_annotate (275); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/c61b8d33b5071b0160a2728dd819c8] ~> TaskHandler[id: 287; name: POREC:digest_align_annotate (278); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/29dca18d7809f668fb8a396ead4cf3] ~> TaskHandler[id: 288; name: POREC:digest_align_annotate (279); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/6152487cfcdf70951669c57a82d931] ~> TaskHandler[id: 289; name: POREC:digest_align_annotate (280); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/7f430816b2ebb365b00b4894bf9cd3] ~> TaskHandler[id: 290; name: POREC:digest_align_annotate (281); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/c899091b9a6d7ca18abfd9dd589cf2] ~> TaskHandler[id: 291; name: POREC:digest_align_annotate (282); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/d7e9d48241b96e8fb02a09e73960a0] ~> TaskHandler[id: 292; name: POREC:digest_align_annotate (283); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/2adb828cd93470051295ac44e50790] ~> TaskHandler[id: 296; name: POREC:digest_align_annotate (287); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/10f7f889f70a02003d1144cad2bd8b] ~> TaskHandler[id: 295; name: POREC:digest_align_annotate (286); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/2d295307fc62a1a846ebf325d46a5d] .. remaining tasks omitted. Aug-17 06:35:24.113 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 285; name: POREC:digest_align_annotate (276); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/2b66db6e042d85dba0125653918efe] Aug-17 06:35:24.115 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (276)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/2b66db6e042d85dba0125653918efe/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:35:24.117 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:35:24.153 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:35:24.153 [Task submitter] INFO nextflow.Session - [1a/1a18ae] Submitted process > POREC:digest_align_annotate (277) Aug-17 06:36:47.353 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 286; name: POREC:digest_align_annotate (277); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/1a18aef363e7bc06b4ff810cdf5cb5] Aug-17 06:36:47.354 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (277)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/1a18aef363e7bc06b4ff810cdf5cb5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:36:47.355 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:36:47.368 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:36:47.368 [Task submitter] INFO nextflow.Session - [0f/c61b8d] Submitted process > POREC:digest_align_annotate (275) Aug-17 06:38:08.987 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 284; name: POREC:digest_align_annotate (275); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/c61b8d33b5071b0160a2728dd819c8] Aug-17 06:38:08.989 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (275)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/c61b8d33b5071b0160a2728dd819c8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:38:08.990 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:38:09.020 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:38:09.020 [Task submitter] INFO nextflow.Session - [f5/29dca1] Submitted process > POREC:digest_align_annotate (278) Aug-17 06:38:34.813 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 287; name: POREC:digest_align_annotate (278); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/29dca18d7809f668fb8a396ead4cf3] Aug-17 06:39:33.275 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 287; name: POREC:digest_align_annotate (278); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/29dca18d7809f668fb8a396ead4cf3] Aug-17 06:39:33.277 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (278)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/29dca18d7809f668fb8a396ead4cf3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:39:33.279 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:39:33.344 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:39:33.345 [Task submitter] INFO nextflow.Session - [86/615248] Submitted process > POREC:digest_align_annotate (279) Aug-17 06:39:44.386 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 289; name: POREC:digest_align_annotate (280); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/7f430816b2ebb365b00b4894bf9cd3] ~> TaskHandler[id: 290; name: POREC:digest_align_annotate (281); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/c899091b9a6d7ca18abfd9dd589cf2] ~> TaskHandler[id: 291; name: POREC:digest_align_annotate (282); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/d7e9d48241b96e8fb02a09e73960a0] ~> TaskHandler[id: 292; name: POREC:digest_align_annotate (283); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/2adb828cd93470051295ac44e50790] ~> TaskHandler[id: 296; name: POREC:digest_align_annotate (287); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/10f7f889f70a02003d1144cad2bd8b] ~> TaskHandler[id: 295; name: POREC:digest_align_annotate (286); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/2d295307fc62a1a846ebf325d46a5d] ~> TaskHandler[id: 294; name: POREC:digest_align_annotate (285); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/aaa77b08ffa41258ca20d9fb1d38f6] ~> TaskHandler[id: 293; name: POREC:digest_align_annotate (284); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/6706d2d2d13d2fb1c289acbbcf3f4b] ~> TaskHandler[id: 298; name: POREC:digest_align_annotate (289); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2c15d161db8c4b790beda7f977bedf] ~> TaskHandler[id: 297; name: POREC:digest_align_annotate (288); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/6d05e407ff98b98739339522c2e10e] .. remaining tasks omitted. Aug-17 06:40:58.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 288; name: POREC:digest_align_annotate (279); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/6152487cfcdf70951669c57a82d931] Aug-17 06:40:58.759 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (279)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/6152487cfcdf70951669c57a82d931/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:40:58.760 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:40:58.807 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:40:58.808 [Task submitter] INFO nextflow.Session - [13/7f4308] Submitted process > POREC:digest_align_annotate (280) Aug-17 06:42:20.506 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 289; name: POREC:digest_align_annotate (280); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/7f430816b2ebb365b00b4894bf9cd3] Aug-17 06:42:20.508 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (280)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/7f430816b2ebb365b00b4894bf9cd3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:42:20.509 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:42:20.543 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:42:20.544 [Task submitter] INFO nextflow.Session - [34/c89909] Submitted process > POREC:digest_align_annotate (281) Aug-17 06:43:34.910 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 290; name: POREC:digest_align_annotate (281); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/c899091b9a6d7ca18abfd9dd589cf2] Aug-17 06:43:45.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 290; name: POREC:digest_align_annotate (281); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/c899091b9a6d7ca18abfd9dd589cf2] Aug-17 06:43:45.553 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (281)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/c899091b9a6d7ca18abfd9dd589cf2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:43:45.554 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:43:45.566 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:43:45.567 [Task submitter] INFO nextflow.Session - [53/d7e9d4] Submitted process > POREC:digest_align_annotate (282) Aug-17 06:44:44.778 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 292; name: POREC:digest_align_annotate (283); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/2adb828cd93470051295ac44e50790] ~> TaskHandler[id: 296; name: POREC:digest_align_annotate (287); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/10f7f889f70a02003d1144cad2bd8b] ~> TaskHandler[id: 295; name: POREC:digest_align_annotate (286); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/2d295307fc62a1a846ebf325d46a5d] ~> TaskHandler[id: 294; name: POREC:digest_align_annotate (285); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/aaa77b08ffa41258ca20d9fb1d38f6] ~> TaskHandler[id: 293; name: POREC:digest_align_annotate (284); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/6706d2d2d13d2fb1c289acbbcf3f4b] ~> TaskHandler[id: 298; name: POREC:digest_align_annotate (289); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2c15d161db8c4b790beda7f977bedf] ~> TaskHandler[id: 297; name: POREC:digest_align_annotate (288); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/6d05e407ff98b98739339522c2e10e] ~> TaskHandler[id: 299; name: POREC:digest_align_annotate (290); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/4bc23365bd9c130da93e4d101becfe] ~> TaskHandler[id: 300; name: POREC:digest_align_annotate (291); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e9c1a500244b5c2a5863446acc41f6] ~> TaskHandler[id: 301; name: POREC:digest_align_annotate (292); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/98964d016cea377aec3bcf2b79923b] .. remaining tasks omitted. Aug-17 06:45:19.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 291; name: POREC:digest_align_annotate (282); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/d7e9d48241b96e8fb02a09e73960a0] Aug-17 06:45:19.629 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (282)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/d7e9d48241b96e8fb02a09e73960a0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:45:19.631 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:45:19.664 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:45:19.664 [Task submitter] INFO nextflow.Session - [8d/2adb82] Submitted process > POREC:digest_align_annotate (283) Aug-17 06:46:56.258 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 292; name: POREC:digest_align_annotate (283); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/2adb828cd93470051295ac44e50790] Aug-17 06:46:56.258 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (283)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/2adb828cd93470051295ac44e50790/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:46:56.259 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:46:56.303 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:46:56.303 [Task submitter] INFO nextflow.Session - [39/10f7f8] Submitted process > POREC:digest_align_annotate (287) Aug-17 06:48:25.588 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 296; name: POREC:digest_align_annotate (287); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/10f7f889f70a02003d1144cad2bd8b] Aug-17 06:48:25.590 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (287)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/10f7f889f70a02003d1144cad2bd8b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:48:25.609 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:48:25.613 [Task submitter] INFO nextflow.Session - [a7/810837] Submitted process > POREC:digest_align_annotate (352) Aug-17 06:48:25.614 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:48:34.911 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 361; name: POREC:digest_align_annotate (352); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/810837340166f816c46f2be2c57c2c] Aug-17 06:49:44.871 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 295; name: POREC:digest_align_annotate (286); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/2d295307fc62a1a846ebf325d46a5d] ~> TaskHandler[id: 294; name: POREC:digest_align_annotate (285); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/aaa77b08ffa41258ca20d9fb1d38f6] ~> TaskHandler[id: 293; name: POREC:digest_align_annotate (284); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/6706d2d2d13d2fb1c289acbbcf3f4b] ~> TaskHandler[id: 298; name: POREC:digest_align_annotate (289); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2c15d161db8c4b790beda7f977bedf] ~> TaskHandler[id: 297; name: POREC:digest_align_annotate (288); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/6d05e407ff98b98739339522c2e10e] ~> TaskHandler[id: 299; name: POREC:digest_align_annotate (290); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/4bc23365bd9c130da93e4d101becfe] ~> TaskHandler[id: 300; name: POREC:digest_align_annotate (291); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e9c1a500244b5c2a5863446acc41f6] ~> TaskHandler[id: 301; name: POREC:digest_align_annotate (292); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/98964d016cea377aec3bcf2b79923b] ~> TaskHandler[id: 302; name: POREC:digest_align_annotate (293); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/ca19e2e73fd30867beee2ae92f84cd] ~> TaskHandler[id: 303; name: POREC:digest_align_annotate (294); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d6b95cc5738031ef5c6820dbeb0ae7] .. remaining tasks omitted. Aug-17 06:50:04.428 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 361; name: POREC:digest_align_annotate (352); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/810837340166f816c46f2be2c57c2c] Aug-17 06:50:04.429 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (352)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/810837340166f816c46f2be2c57c2c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:50:04.430 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:50:04.472 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:50:04.473 [Task submitter] INFO nextflow.Session - [ad/2d2953] Submitted process > POREC:digest_align_annotate (286) Aug-17 06:51:34.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 295; name: POREC:digest_align_annotate (286); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/2d295307fc62a1a846ebf325d46a5d] Aug-17 06:51:34.499 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (286)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/2d295307fc62a1a846ebf325d46a5d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:51:34.500 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:51:34.529 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:51:34.529 [Task submitter] INFO nextflow.Session - [3c/aaa77b] Submitted process > POREC:digest_align_annotate (285) Aug-17 06:53:08.839 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 294; name: POREC:digest_align_annotate (285); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/aaa77b08ffa41258ca20d9fb1d38f6] Aug-17 06:53:08.840 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (285)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/aaa77b08ffa41258ca20d9fb1d38f6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:53:08.840 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:53:08.856 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:53:08.856 [Task submitter] INFO nextflow.Session - [32/6706d2] Submitted process > POREC:digest_align_annotate (284) Aug-17 06:53:34.966 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 293; name: POREC:digest_align_annotate (284); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/6706d2d2d13d2fb1c289acbbcf3f4b] Aug-17 06:54:42.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 293; name: POREC:digest_align_annotate (284); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/6706d2d2d13d2fb1c289acbbcf3f4b] Aug-17 06:54:42.122 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (284)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/6706d2d2d13d2fb1c289acbbcf3f4b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:54:42.123 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:54:42.152 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:54:42.152 [Task submitter] INFO nextflow.Session - [76/2c15d1] Submitted process > POREC:digest_align_annotate (289) Aug-17 06:54:45.168 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 297; name: POREC:digest_align_annotate (288); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/6d05e407ff98b98739339522c2e10e] ~> TaskHandler[id: 299; name: POREC:digest_align_annotate (290); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/4bc23365bd9c130da93e4d101becfe] ~> TaskHandler[id: 300; name: POREC:digest_align_annotate (291); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e9c1a500244b5c2a5863446acc41f6] ~> TaskHandler[id: 301; name: POREC:digest_align_annotate (292); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/98964d016cea377aec3bcf2b79923b] ~> TaskHandler[id: 302; name: POREC:digest_align_annotate (293); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/ca19e2e73fd30867beee2ae92f84cd] ~> TaskHandler[id: 303; name: POREC:digest_align_annotate (294); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d6b95cc5738031ef5c6820dbeb0ae7] ~> TaskHandler[id: 304; name: POREC:digest_align_annotate (295); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/f5f63b3a347af13a0775f800a8cffc] ~> TaskHandler[id: 305; name: POREC:digest_align_annotate (296); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/02442e99fb87b137c6bd69e500bc2b] ~> TaskHandler[id: 306; name: POREC:digest_align_annotate (297); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/f8fbcf5f69af50e8208504db62c303] ~> TaskHandler[id: 307; name: POREC:digest_align_annotate (298); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2439d2e4633c96a98416fdf2f1f63b] .. remaining tasks omitted. Aug-17 06:56:18.590 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 298; name: POREC:digest_align_annotate (289); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2c15d161db8c4b790beda7f977bedf] Aug-17 06:56:18.591 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (289)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2c15d161db8c4b790beda7f977bedf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:56:18.592 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:56:18.613 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:56:18.613 [Task submitter] INFO nextflow.Session - [49/6d05e4] Submitted process > POREC:digest_align_annotate (288) Aug-17 06:57:59.024 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 297; name: POREC:digest_align_annotate (288); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/6d05e407ff98b98739339522c2e10e] Aug-17 06:57:59.025 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (288)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/6d05e407ff98b98739339522c2e10e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:57:59.026 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:57:59.073 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:57:59.073 [Task submitter] INFO nextflow.Session - [c1/4bc233] Submitted process > POREC:digest_align_annotate (290) Aug-17 06:58:34.981 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 299; name: POREC:digest_align_annotate (290); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/4bc23365bd9c130da93e4d101becfe] Aug-17 06:59:42.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 299; name: POREC:digest_align_annotate (290); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/4bc23365bd9c130da93e4d101becfe] Aug-17 06:59:42.417 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (290)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/4bc23365bd9c130da93e4d101becfe/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 06:59:42.419 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 06:59:42.455 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 06:59:42.455 [Task submitter] INFO nextflow.Session - [06/e9c1a5] Submitted process > POREC:digest_align_annotate (291) Aug-17 06:59:45.471 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 301; name: POREC:digest_align_annotate (292); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/98964d016cea377aec3bcf2b79923b] ~> TaskHandler[id: 302; name: POREC:digest_align_annotate (293); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/ca19e2e73fd30867beee2ae92f84cd] ~> TaskHandler[id: 303; name: POREC:digest_align_annotate (294); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d6b95cc5738031ef5c6820dbeb0ae7] ~> TaskHandler[id: 304; name: POREC:digest_align_annotate (295); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/f5f63b3a347af13a0775f800a8cffc] ~> TaskHandler[id: 305; name: POREC:digest_align_annotate (296); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/02442e99fb87b137c6bd69e500bc2b] ~> TaskHandler[id: 306; name: POREC:digest_align_annotate (297); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/f8fbcf5f69af50e8208504db62c303] ~> TaskHandler[id: 307; name: POREC:digest_align_annotate (298); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2439d2e4633c96a98416fdf2f1f63b] ~> TaskHandler[id: 308; name: POREC:digest_align_annotate (299); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/4851462764c66f8d7e4f3890833ef6] ~> TaskHandler[id: 337; name: POREC:digest_align_annotate (328); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1050eaa73d1df9b812d24e4e780748] ~> TaskHandler[id: 310; name: POREC:digest_align_annotate (301); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f125dde15c40e392883c1aed0adcaa] .. remaining tasks omitted. Aug-17 07:01:20.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 300; name: POREC:digest_align_annotate (291); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e9c1a500244b5c2a5863446acc41f6] Aug-17 07:01:20.626 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (291)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e9c1a500244b5c2a5863446acc41f6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:01:20.642 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:01:20.679 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:01:20.679 [Task submitter] INFO nextflow.Session - [b0/98964d] Submitted process > POREC:digest_align_annotate (292) Aug-17 07:02:55.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 301; name: POREC:digest_align_annotate (292); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/98964d016cea377aec3bcf2b79923b] Aug-17 07:02:55.747 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (292)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/98964d016cea377aec3bcf2b79923b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:02:55.748 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:02:55.773 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:02:55.773 [Task submitter] INFO nextflow.Session - [b7/ca19e2] Submitted process > POREC:digest_align_annotate (293) Aug-17 07:03:34.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 302; name: POREC:digest_align_annotate (293); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/ca19e2e73fd30867beee2ae92f84cd] Aug-17 07:04:26.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 302; name: POREC:digest_align_annotate (293); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/ca19e2e73fd30867beee2ae92f84cd] Aug-17 07:04:26.831 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (293)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/ca19e2e73fd30867beee2ae92f84cd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:04:26.833 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:04:26.870 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:04:26.870 [Task submitter] INFO nextflow.Session - [e8/d6b95c] Submitted process > POREC:digest_align_annotate (294) Aug-17 07:04:45.937 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 304; name: POREC:digest_align_annotate (295); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/f5f63b3a347af13a0775f800a8cffc] ~> TaskHandler[id: 305; name: POREC:digest_align_annotate (296); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/02442e99fb87b137c6bd69e500bc2b] ~> TaskHandler[id: 306; name: POREC:digest_align_annotate (297); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/f8fbcf5f69af50e8208504db62c303] ~> TaskHandler[id: 307; name: POREC:digest_align_annotate (298); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2439d2e4633c96a98416fdf2f1f63b] ~> TaskHandler[id: 308; name: POREC:digest_align_annotate (299); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/4851462764c66f8d7e4f3890833ef6] ~> TaskHandler[id: 337; name: POREC:digest_align_annotate (328); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1050eaa73d1df9b812d24e4e780748] ~> TaskHandler[id: 310; name: POREC:digest_align_annotate (301); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f125dde15c40e392883c1aed0adcaa] ~> TaskHandler[id: 311; name: POREC:digest_align_annotate (302); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/8035bc42191cc30acad386ef0e0a27] ~> TaskHandler[id: 312; name: POREC:digest_align_annotate (303); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/53960697e8ce2366eed74480913831] ~> TaskHandler[id: 313; name: POREC:digest_align_annotate (304); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/191c589a47c961c95606dd5335fbfd] .. remaining tasks omitted. Aug-17 07:05:54.826 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 303; name: POREC:digest_align_annotate (294); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d6b95cc5738031ef5c6820dbeb0ae7] Aug-17 07:05:54.827 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (294)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d6b95cc5738031ef5c6820dbeb0ae7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:05:54.828 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:05:54.841 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:05:54.841 [Task submitter] INFO nextflow.Session - [e5/f5f63b] Submitted process > POREC:digest_align_annotate (295) Aug-17 07:07:18.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 304; name: POREC:digest_align_annotate (295); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/f5f63b3a347af13a0775f800a8cffc] Aug-17 07:07:18.336 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (295)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/f5f63b3a347af13a0775f800a8cffc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:07:18.337 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:07:18.389 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:07:18.389 [Task submitter] INFO nextflow.Session - [9c/02442e] Submitted process > POREC:digest_align_annotate (296) Aug-17 07:08:35.029 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 305; name: POREC:digest_align_annotate (296); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/02442e99fb87b137c6bd69e500bc2b] Aug-17 07:08:42.393 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 305; name: POREC:digest_align_annotate (296); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/02442e99fb87b137c6bd69e500bc2b] Aug-17 07:08:42.394 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (296)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/02442e99fb87b137c6bd69e500bc2b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:08:42.395 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:08:42.411 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:08:42.411 [Task submitter] INFO nextflow.Session - [f4/f8fbcf] Submitted process > POREC:digest_align_annotate (297) Aug-17 07:09:46.612 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 307; name: POREC:digest_align_annotate (298); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2439d2e4633c96a98416fdf2f1f63b] ~> TaskHandler[id: 308; name: POREC:digest_align_annotate (299); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/4851462764c66f8d7e4f3890833ef6] ~> TaskHandler[id: 337; name: POREC:digest_align_annotate (328); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1050eaa73d1df9b812d24e4e780748] ~> TaskHandler[id: 310; name: POREC:digest_align_annotate (301); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f125dde15c40e392883c1aed0adcaa] ~> TaskHandler[id: 311; name: POREC:digest_align_annotate (302); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/8035bc42191cc30acad386ef0e0a27] ~> TaskHandler[id: 312; name: POREC:digest_align_annotate (303); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/53960697e8ce2366eed74480913831] ~> TaskHandler[id: 313; name: POREC:digest_align_annotate (304); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/191c589a47c961c95606dd5335fbfd] ~> TaskHandler[id: 314; name: POREC:digest_align_annotate (305); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/530b5b921ff1ec100f5312b09afde5] ~> TaskHandler[id: 315; name: POREC:digest_align_annotate (306); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/b1c16d822a66be1217106ea37337a0] ~> TaskHandler[id: 317; name: POREC:digest_align_annotate (308); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/89d09912d5421512041f72fc8f0c9f] .. remaining tasks omitted. Aug-17 07:10:05.306 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 306; name: POREC:digest_align_annotate (297); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/f8fbcf5f69af50e8208504db62c303] Aug-17 07:10:05.307 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (297)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/f8fbcf5f69af50e8208504db62c303/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:10:05.308 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:10:05.312 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:10:05.312 [Task submitter] INFO nextflow.Session - [fe/2439d2] Submitted process > POREC:digest_align_annotate (298) Aug-17 07:11:28.437 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 307; name: POREC:digest_align_annotate (298); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2439d2e4633c96a98416fdf2f1f63b] Aug-17 07:11:28.457 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (298)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2439d2e4633c96a98416fdf2f1f63b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:11:28.457 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:11:28.463 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:11:28.463 [Task submitter] INFO nextflow.Session - [93/485146] Submitted process > POREC:digest_align_annotate (299) Aug-17 07:12:51.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 308; name: POREC:digest_align_annotate (299); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/4851462764c66f8d7e4f3890833ef6] Aug-17 07:12:51.402 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (299)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/4851462764c66f8d7e4f3890833ef6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:12:51.403 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:12:51.431 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:12:51.431 [Task submitter] INFO nextflow.Session - [ae/1050ea] Submitted process > POREC:digest_align_annotate (328) Aug-17 07:13:35.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 337; name: POREC:digest_align_annotate (328); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1050eaa73d1df9b812d24e4e780748] Aug-17 07:14:21.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 337; name: POREC:digest_align_annotate (328); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1050eaa73d1df9b812d24e4e780748] Aug-17 07:14:21.793 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (328)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1050eaa73d1df9b812d24e4e780748/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:14:21.795 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:14:21.826 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:14:21.827 [Task submitter] INFO nextflow.Session - [a5/f125dd] Submitted process > POREC:digest_align_annotate (301) Aug-17 07:14:46.918 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 311; name: POREC:digest_align_annotate (302); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/8035bc42191cc30acad386ef0e0a27] ~> TaskHandler[id: 312; name: POREC:digest_align_annotate (303); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/53960697e8ce2366eed74480913831] ~> TaskHandler[id: 313; name: POREC:digest_align_annotate (304); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/191c589a47c961c95606dd5335fbfd] ~> TaskHandler[id: 314; name: POREC:digest_align_annotate (305); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/530b5b921ff1ec100f5312b09afde5] ~> TaskHandler[id: 315; name: POREC:digest_align_annotate (306); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/b1c16d822a66be1217106ea37337a0] ~> TaskHandler[id: 317; name: POREC:digest_align_annotate (308); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/89d09912d5421512041f72fc8f0c9f] ~> TaskHandler[id: 318; name: POREC:digest_align_annotate (309); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/8c399c2c61cd04bf1f7b4f88f5c660] ~> TaskHandler[id: 316; name: POREC:digest_align_annotate (307); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/0b7d48fb062a946ccc7095c9b61263] ~> TaskHandler[id: 319; name: POREC:digest_align_annotate (310); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/b931bfbbdad3f53c36abba8d0bd0de] ~> TaskHandler[id: 320; name: POREC:digest_align_annotate (311); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/b1d8044fcc73cfe3dfb93c3f3fa67c] .. remaining tasks omitted. Aug-17 07:15:55.471 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 310; name: POREC:digest_align_annotate (301); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f125dde15c40e392883c1aed0adcaa] Aug-17 07:15:55.472 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (301)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f125dde15c40e392883c1aed0adcaa/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:15:55.473 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:15:55.518 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:15:55.518 [Task submitter] INFO nextflow.Session - [d7/8035bc] Submitted process > POREC:digest_align_annotate (302) Aug-17 07:17:17.539 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 311; name: POREC:digest_align_annotate (302); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/8035bc42191cc30acad386ef0e0a27] Aug-17 07:17:17.540 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (302)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/8035bc42191cc30acad386ef0e0a27/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:17:17.541 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:17:17.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:17:17.580 [Task submitter] INFO nextflow.Session - [be/539606] Submitted process > POREC:digest_align_annotate (303) Aug-17 07:18:35.133 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 312; name: POREC:digest_align_annotate (303); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/53960697e8ce2366eed74480913831] Aug-17 07:18:40.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 312; name: POREC:digest_align_annotate (303); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/53960697e8ce2366eed74480913831] Aug-17 07:18:40.592 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (303)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/53960697e8ce2366eed74480913831/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:18:40.593 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:18:40.609 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:18:40.609 [Task submitter] INFO nextflow.Session - [89/191c58] Submitted process > POREC:digest_align_annotate (304) Aug-17 07:19:47.821 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 314; name: POREC:digest_align_annotate (305); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/530b5b921ff1ec100f5312b09afde5] ~> TaskHandler[id: 315; name: POREC:digest_align_annotate (306); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/b1c16d822a66be1217106ea37337a0] ~> TaskHandler[id: 317; name: POREC:digest_align_annotate (308); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/89d09912d5421512041f72fc8f0c9f] ~> TaskHandler[id: 318; name: POREC:digest_align_annotate (309); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/8c399c2c61cd04bf1f7b4f88f5c660] ~> TaskHandler[id: 316; name: POREC:digest_align_annotate (307); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/0b7d48fb062a946ccc7095c9b61263] ~> TaskHandler[id: 319; name: POREC:digest_align_annotate (310); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/b931bfbbdad3f53c36abba8d0bd0de] ~> TaskHandler[id: 320; name: POREC:digest_align_annotate (311); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/b1d8044fcc73cfe3dfb93c3f3fa67c] ~> TaskHandler[id: 351; name: POREC:digest_align_annotate (342); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/975bf640ffa5daf0d0b58341b3def0] ~> TaskHandler[id: 321; name: POREC:digest_align_annotate (312); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/8a657d5ca1adaa3f42dd17422a4aba] ~> TaskHandler[id: 322; name: POREC:digest_align_annotate (313); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f98fc1d4174d277da752a81d8db82b] .. remaining tasks omitted. Aug-17 07:20:12.526 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 313; name: POREC:digest_align_annotate (304); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/191c589a47c961c95606dd5335fbfd] Aug-17 07:20:12.527 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (304)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/191c589a47c961c95606dd5335fbfd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:20:12.527 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:20:12.566 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:20:12.566 [Task submitter] INFO nextflow.Session - [fb/530b5b] Submitted process > POREC:digest_align_annotate (305) Aug-17 07:21:46.621 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 314; name: POREC:digest_align_annotate (305); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/530b5b921ff1ec100f5312b09afde5] Aug-17 07:21:46.624 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (305)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/530b5b921ff1ec100f5312b09afde5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:21:46.625 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:21:46.676 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:21:46.677 [Task submitter] INFO nextflow.Session - [7d/b1c16d] Submitted process > POREC:digest_align_annotate (306) Aug-17 07:23:19.313 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 315; name: POREC:digest_align_annotate (306); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/b1c16d822a66be1217106ea37337a0] Aug-17 07:23:19.314 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (306)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/b1c16d822a66be1217106ea37337a0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:23:19.315 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:23:19.339 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:23:19.339 [Task submitter] INFO nextflow.Session - [c3/89d099] Submitted process > POREC:digest_align_annotate (308) Aug-17 07:23:35.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 317; name: POREC:digest_align_annotate (308); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/89d09912d5421512041f72fc8f0c9f] Aug-17 07:24:44.509 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 317; name: POREC:digest_align_annotate (308); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/89d09912d5421512041f72fc8f0c9f] Aug-17 07:24:44.510 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (308)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/89d09912d5421512041f72fc8f0c9f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:24:44.511 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:24:44.535 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:24:44.535 [Task submitter] INFO nextflow.Session - [6e/8c399c] Submitted process > POREC:digest_align_annotate (309) Aug-17 07:24:48.555 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 316; name: POREC:digest_align_annotate (307); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/0b7d48fb062a946ccc7095c9b61263] ~> TaskHandler[id: 319; name: POREC:digest_align_annotate (310); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/b931bfbbdad3f53c36abba8d0bd0de] ~> TaskHandler[id: 320; name: POREC:digest_align_annotate (311); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/b1d8044fcc73cfe3dfb93c3f3fa67c] ~> TaskHandler[id: 351; name: POREC:digest_align_annotate (342); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/975bf640ffa5daf0d0b58341b3def0] ~> TaskHandler[id: 321; name: POREC:digest_align_annotate (312); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/8a657d5ca1adaa3f42dd17422a4aba] ~> TaskHandler[id: 322; name: POREC:digest_align_annotate (313); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f98fc1d4174d277da752a81d8db82b] ~> TaskHandler[id: 323; name: POREC:digest_align_annotate (314); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/ce4820915dee367d5339524612f07e] ~> TaskHandler[id: 324; name: POREC:digest_align_annotate (315); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/907c44d53a65ae637341dd1a6785e3] ~> TaskHandler[id: 325; name: POREC:digest_align_annotate (316); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6b79ad97d9c6ca6ea62aadd9475f21] ~> TaskHandler[id: 326; name: POREC:digest_align_annotate (317); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/c843ca15a4db762a87b3a30a73143f] .. remaining tasks omitted. Aug-17 07:26:09.949 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 318; name: POREC:digest_align_annotate (309); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/8c399c2c61cd04bf1f7b4f88f5c660] Aug-17 07:26:09.950 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (309)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/8c399c2c61cd04bf1f7b4f88f5c660/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:26:09.951 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:26:10.009 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:26:10.009 [Task submitter] INFO nextflow.Session - [b5/0b7d48] Submitted process > POREC:digest_align_annotate (307) Aug-17 07:27:33.034 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 316; name: POREC:digest_align_annotate (307); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/0b7d48fb062a946ccc7095c9b61263] Aug-17 07:27:33.036 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (307)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/0b7d48fb062a946ccc7095c9b61263/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:27:33.037 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:27:33.044 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:27:33.045 [Task submitter] INFO nextflow.Session - [59/b931bf] Submitted process > POREC:digest_align_annotate (310) Aug-17 07:28:35.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 319; name: POREC:digest_align_annotate (310); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/b931bfbbdad3f53c36abba8d0bd0de] Aug-17 07:28:57.807 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 319; name: POREC:digest_align_annotate (310); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/b931bfbbdad3f53c36abba8d0bd0de] Aug-17 07:28:57.807 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (310)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/b931bfbbdad3f53c36abba8d0bd0de/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:28:57.808 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:28:57.813 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:28:57.813 [Task submitter] INFO nextflow.Session - [83/b1d804] Submitted process > POREC:digest_align_annotate (311) Aug-17 07:29:48.982 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 351; name: POREC:digest_align_annotate (342); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/975bf640ffa5daf0d0b58341b3def0] ~> TaskHandler[id: 321; name: POREC:digest_align_annotate (312); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/8a657d5ca1adaa3f42dd17422a4aba] ~> TaskHandler[id: 322; name: POREC:digest_align_annotate (313); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f98fc1d4174d277da752a81d8db82b] ~> TaskHandler[id: 323; name: POREC:digest_align_annotate (314); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/ce4820915dee367d5339524612f07e] ~> TaskHandler[id: 324; name: POREC:digest_align_annotate (315); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/907c44d53a65ae637341dd1a6785e3] ~> TaskHandler[id: 325; name: POREC:digest_align_annotate (316); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6b79ad97d9c6ca6ea62aadd9475f21] ~> TaskHandler[id: 326; name: POREC:digest_align_annotate (317); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/c843ca15a4db762a87b3a30a73143f] ~> TaskHandler[id: 327; name: POREC:digest_align_annotate (318); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/302635d44a952e7dafbc1d7ca192af] ~> TaskHandler[id: 328; name: POREC:digest_align_annotate (319); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/6742a3611608c3ca0c096ca09c8b13] ~> TaskHandler[id: 330; name: POREC:digest_align_annotate (321); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/9394cf5ca25c6485c0d580d464de63] .. remaining tasks omitted. Aug-17 07:30:23.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 320; name: POREC:digest_align_annotate (311); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/b1d8044fcc73cfe3dfb93c3f3fa67c] Aug-17 07:30:23.363 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (311)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/b1d8044fcc73cfe3dfb93c3f3fa67c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:30:23.364 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:30:23.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:30:23.379 [Task submitter] INFO nextflow.Session - [b7/975bf6] Submitted process > POREC:digest_align_annotate (342) Aug-17 07:32:17.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 351; name: POREC:digest_align_annotate (342); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/975bf640ffa5daf0d0b58341b3def0] Aug-17 07:32:17.850 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (342)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/975bf640ffa5daf0d0b58341b3def0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:32:17.851 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:32:17.882 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:32:17.883 [Task submitter] INFO nextflow.Session - [d0/8a657d] Submitted process > POREC:digest_align_annotate (312) Aug-17 07:33:35.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 321; name: POREC:digest_align_annotate (312); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/8a657d5ca1adaa3f42dd17422a4aba] Aug-17 07:33:49.170 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 321; name: POREC:digest_align_annotate (312); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/8a657d5ca1adaa3f42dd17422a4aba] Aug-17 07:33:49.172 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (312)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/8a657d5ca1adaa3f42dd17422a4aba/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:33:49.176 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:33:49.202 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:33:49.202 [Task submitter] INFO nextflow.Session - [85/f98fc1] Submitted process > POREC:digest_align_annotate (313) Aug-17 07:34:49.403 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 323; name: POREC:digest_align_annotate (314); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/ce4820915dee367d5339524612f07e] ~> TaskHandler[id: 324; name: POREC:digest_align_annotate (315); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/907c44d53a65ae637341dd1a6785e3] ~> TaskHandler[id: 325; name: POREC:digest_align_annotate (316); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6b79ad97d9c6ca6ea62aadd9475f21] ~> TaskHandler[id: 326; name: POREC:digest_align_annotate (317); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/c843ca15a4db762a87b3a30a73143f] ~> TaskHandler[id: 327; name: POREC:digest_align_annotate (318); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/302635d44a952e7dafbc1d7ca192af] ~> TaskHandler[id: 328; name: POREC:digest_align_annotate (319); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/6742a3611608c3ca0c096ca09c8b13] ~> TaskHandler[id: 330; name: POREC:digest_align_annotate (321); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/9394cf5ca25c6485c0d580d464de63] ~> TaskHandler[id: 329; name: POREC:digest_align_annotate (320); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/8bec5c63eca491775ac4906e919680] ~> TaskHandler[id: 331; name: POREC:digest_align_annotate (322); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/73edcbd47f8d18c7e70aa73cb7a000] ~> TaskHandler[id: 332; name: POREC:digest_align_annotate (323); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/f889a8c423a1ba30e4dc39e34c2e81] .. remaining tasks omitted. Aug-17 07:35:26.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 322; name: POREC:digest_align_annotate (313); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f98fc1d4174d277da752a81d8db82b] Aug-17 07:35:26.633 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (313)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f98fc1d4174d277da752a81d8db82b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:35:26.634 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:35:26.648 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:35:26.648 [Task submitter] INFO nextflow.Session - [7f/ce4820] Submitted process > POREC:digest_align_annotate (314) Aug-17 07:37:05.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 323; name: POREC:digest_align_annotate (314); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/ce4820915dee367d5339524612f07e] Aug-17 07:37:05.737 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (314)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/ce4820915dee367d5339524612f07e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:37:05.738 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:37:05.751 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:37:05.751 [Task submitter] INFO nextflow.Session - [e0/907c44] Submitted process > POREC:digest_align_annotate (315) Aug-17 07:38:35.446 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 324; name: POREC:digest_align_annotate (315); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/907c44d53a65ae637341dd1a6785e3] Aug-17 07:38:41.036 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 324; name: POREC:digest_align_annotate (315); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/907c44d53a65ae637341dd1a6785e3] Aug-17 07:38:41.037 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (315)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/907c44d53a65ae637341dd1a6785e3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:38:41.038 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:38:41.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:38:41.065 [Task submitter] INFO nextflow.Session - [41/6b79ad] Submitted process > POREC:digest_align_annotate (316) Aug-17 07:39:50.297 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 326; name: POREC:digest_align_annotate (317); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/c843ca15a4db762a87b3a30a73143f] ~> TaskHandler[id: 327; name: POREC:digest_align_annotate (318); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/302635d44a952e7dafbc1d7ca192af] ~> TaskHandler[id: 328; name: POREC:digest_align_annotate (319); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/6742a3611608c3ca0c096ca09c8b13] ~> TaskHandler[id: 330; name: POREC:digest_align_annotate (321); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/9394cf5ca25c6485c0d580d464de63] ~> TaskHandler[id: 329; name: POREC:digest_align_annotate (320); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/8bec5c63eca491775ac4906e919680] ~> TaskHandler[id: 331; name: POREC:digest_align_annotate (322); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/73edcbd47f8d18c7e70aa73cb7a000] ~> TaskHandler[id: 332; name: POREC:digest_align_annotate (323); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/f889a8c423a1ba30e4dc39e34c2e81] ~> TaskHandler[id: 333; name: POREC:digest_align_annotate (324); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/8d1cd41ebb51832045d37437584483] ~> TaskHandler[id: 365; name: POREC:digest_align_annotate (356); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/e59be08b9d02ba8b6732c090f32eae] ~> TaskHandler[id: 334; name: POREC:digest_align_annotate (325); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/290d18a852ce06149e6b9ce4a46e07] .. remaining tasks omitted. Aug-17 07:40:20.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 325; name: POREC:digest_align_annotate (316); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6b79ad97d9c6ca6ea62aadd9475f21] Aug-17 07:40:20.612 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (316)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6b79ad97d9c6ca6ea62aadd9475f21/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:40:20.613 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:40:20.629 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:40:20.629 [Task submitter] INFO nextflow.Session - [3a/c843ca] Submitted process > POREC:digest_align_annotate (317) Aug-17 07:41:58.804 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 326; name: POREC:digest_align_annotate (317); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/c843ca15a4db762a87b3a30a73143f] Aug-17 07:41:58.806 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (317)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/c843ca15a4db762a87b3a30a73143f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:41:58.816 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:41:58.842 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:41:58.842 [Task submitter] INFO nextflow.Session - [3a/302635] Submitted process > POREC:digest_align_annotate (318) Aug-17 07:43:32.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 327; name: POREC:digest_align_annotate (318); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/302635d44a952e7dafbc1d7ca192af] Aug-17 07:43:32.310 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (318)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/302635d44a952e7dafbc1d7ca192af/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:43:32.311 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:43:32.380 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:43:32.380 [Task submitter] INFO nextflow.Session - [66/6742a3] Submitted process > POREC:digest_align_annotate (319) Aug-17 07:43:35.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 328; name: POREC:digest_align_annotate (319); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/6742a3611608c3ca0c096ca09c8b13] Aug-17 07:44:50.627 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 330; name: POREC:digest_align_annotate (321); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/9394cf5ca25c6485c0d580d464de63] ~> TaskHandler[id: 329; name: POREC:digest_align_annotate (320); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/8bec5c63eca491775ac4906e919680] ~> TaskHandler[id: 331; name: POREC:digest_align_annotate (322); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/73edcbd47f8d18c7e70aa73cb7a000] ~> TaskHandler[id: 332; name: POREC:digest_align_annotate (323); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/f889a8c423a1ba30e4dc39e34c2e81] ~> TaskHandler[id: 333; name: POREC:digest_align_annotate (324); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/8d1cd41ebb51832045d37437584483] ~> TaskHandler[id: 365; name: POREC:digest_align_annotate (356); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/e59be08b9d02ba8b6732c090f32eae] ~> TaskHandler[id: 334; name: POREC:digest_align_annotate (325); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/290d18a852ce06149e6b9ce4a46e07] ~> TaskHandler[id: 335; name: POREC:digest_align_annotate (326); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fd635c5498e5191d9d82781e5ad320] ~> TaskHandler[id: 336; name: POREC:digest_align_annotate (327); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/5488c02ead2b0a77b0a8a96a97c512] ~> TaskHandler[id: 338; name: POREC:digest_align_annotate (329); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/1ab69aac4491746828cfd18185df02] .. remaining tasks omitted. Aug-17 07:44:56.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 328; name: POREC:digest_align_annotate (319); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/6742a3611608c3ca0c096ca09c8b13] Aug-17 07:44:56.790 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (319)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/6742a3611608c3ca0c096ca09c8b13/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:44:56.791 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:44:56.798 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:44:56.798 [Task submitter] INFO nextflow.Session - [45/9394cf] Submitted process > POREC:digest_align_annotate (321) Aug-17 07:46:37.987 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 330; name: POREC:digest_align_annotate (321); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/9394cf5ca25c6485c0d580d464de63] Aug-17 07:46:37.988 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (321)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/9394cf5ca25c6485c0d580d464de63/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:46:37.988 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:46:38.020 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:46:38.020 [Task submitter] INFO nextflow.Session - [87/8bec5c] Submitted process > POREC:digest_align_annotate (320) Aug-17 07:48:22.367 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 329; name: POREC:digest_align_annotate (320); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/8bec5c63eca491775ac4906e919680] Aug-17 07:48:22.368 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (320)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/8bec5c63eca491775ac4906e919680/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:48:22.369 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:48:22.398 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:48:22.398 [Task submitter] INFO nextflow.Session - [63/73edcb] Submitted process > POREC:digest_align_annotate (322) Aug-17 07:48:35.590 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 331; name: POREC:digest_align_annotate (322); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/73edcbd47f8d18c7e70aa73cb7a000] Aug-17 07:49:47.614 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 331; name: POREC:digest_align_annotate (322); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/73edcbd47f8d18c7e70aa73cb7a000] Aug-17 07:49:47.616 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (322)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/73edcbd47f8d18c7e70aa73cb7a000/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:49:47.622 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:49:47.628 [Task submitter] INFO nextflow.Session - [db/f889a8] Submitted process > POREC:digest_align_annotate (323) Aug-17 07:49:47.630 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:49:50.646 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 333; name: POREC:digest_align_annotate (324); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/8d1cd41ebb51832045d37437584483] ~> TaskHandler[id: 365; name: POREC:digest_align_annotate (356); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/e59be08b9d02ba8b6732c090f32eae] ~> TaskHandler[id: 334; name: POREC:digest_align_annotate (325); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/290d18a852ce06149e6b9ce4a46e07] ~> TaskHandler[id: 335; name: POREC:digest_align_annotate (326); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fd635c5498e5191d9d82781e5ad320] ~> TaskHandler[id: 336; name: POREC:digest_align_annotate (327); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/5488c02ead2b0a77b0a8a96a97c512] ~> TaskHandler[id: 338; name: POREC:digest_align_annotate (329); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/1ab69aac4491746828cfd18185df02] ~> TaskHandler[id: 339; name: POREC:digest_align_annotate (330); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/71ac5e6c955f696a51e472e07eb5b7] ~> TaskHandler[id: 341; name: POREC:digest_align_annotate (332); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/e4472833ae452c18cf2b2e74d52a90] ~> TaskHandler[id: 343; name: POREC:digest_align_annotate (334); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6d62287d6c8a7a98338f596e85e849] ~> TaskHandler[id: 340; name: POREC:digest_align_annotate (331); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/732123c0b6bfafd1322dc4132628c5] .. remaining tasks omitted. Aug-17 07:51:08.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 332; name: POREC:digest_align_annotate (323); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/f889a8c423a1ba30e4dc39e34c2e81] Aug-17 07:51:08.361 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (323)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/f889a8c423a1ba30e4dc39e34c2e81/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:51:08.362 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:51:08.392 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:51:08.392 [Task submitter] INFO nextflow.Session - [ec/8d1cd4] Submitted process > POREC:digest_align_annotate (324) Aug-17 07:52:31.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 333; name: POREC:digest_align_annotate (324); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/8d1cd41ebb51832045d37437584483] Aug-17 07:52:31.893 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (324)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/8d1cd41ebb51832045d37437584483/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:52:31.894 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:52:31.900 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:52:31.900 [Task submitter] INFO nextflow.Session - [d3/e59be0] Submitted process > POREC:digest_align_annotate (356) Aug-17 07:53:35.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 365; name: POREC:digest_align_annotate (356); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/e59be08b9d02ba8b6732c090f32eae] Aug-17 07:53:57.455 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 365; name: POREC:digest_align_annotate (356); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/e59be08b9d02ba8b6732c090f32eae] Aug-17 07:53:57.456 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (356)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/e59be08b9d02ba8b6732c090f32eae/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:53:57.458 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:53:57.464 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:53:57.464 [Task submitter] INFO nextflow.Session - [53/290d18] Submitted process > POREC:digest_align_annotate (325) Aug-17 07:54:51.633 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 901 -- tasks to be submitted are shown below ~> TaskHandler[id: 335; name: POREC:digest_align_annotate (326); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fd635c5498e5191d9d82781e5ad320] ~> TaskHandler[id: 336; name: POREC:digest_align_annotate (327); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/5488c02ead2b0a77b0a8a96a97c512] ~> TaskHandler[id: 338; name: POREC:digest_align_annotate (329); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/1ab69aac4491746828cfd18185df02] ~> TaskHandler[id: 339; name: POREC:digest_align_annotate (330); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/71ac5e6c955f696a51e472e07eb5b7] ~> TaskHandler[id: 341; name: POREC:digest_align_annotate (332); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/e4472833ae452c18cf2b2e74d52a90] ~> TaskHandler[id: 343; name: POREC:digest_align_annotate (334); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6d62287d6c8a7a98338f596e85e849] ~> TaskHandler[id: 340; name: POREC:digest_align_annotate (331); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/732123c0b6bfafd1322dc4132628c5] ~> TaskHandler[id: 373; name: POREC:digest_align_annotate (364); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/026736269f0458f81a1f19d94ce4b0] ~> TaskHandler[id: 342; name: POREC:digest_align_annotate (333); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/d402a04bcbc1c7d94edfa82f15776d] ~> TaskHandler[id: 375; name: POREC:digest_align_annotate (366); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/ba7865d450c7c04e473ced990bb49f] .. remaining tasks omitted. Aug-17 07:55:18.728 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 334; name: POREC:digest_align_annotate (325); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/290d18a852ce06149e6b9ce4a46e07] Aug-17 07:55:18.729 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (325)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/290d18a852ce06149e6b9ce4a46e07/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:55:18.729 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:55:18.760 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:55:18.760 [Task submitter] INFO nextflow.Session - [95/fd635c] Submitted process > POREC:digest_align_annotate (326) Aug-17 07:56:41.025 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 335; name: POREC:digest_align_annotate (326); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fd635c5498e5191d9d82781e5ad320] Aug-17 07:56:41.026 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (326)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fd635c5498e5191d9d82781e5ad320/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:56:41.027 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:56:41.046 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:56:41.046 [Task submitter] INFO nextflow.Session - [59/7df3c4] Submitted process > POREC:to_pairs_file (302) Aug-17 07:58:13.398 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1213; name: POREC:to_pairs_file (302); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/7df3c447368f49c9b1cb4beef96477] Aug-17 07:58:13.406 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:58:13.406 [Task submitter] INFO nextflow.Session - [7c/5488c0] Submitted process > POREC:digest_align_annotate (327) Aug-17 07:58:35.730 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 336; name: POREC:digest_align_annotate (327); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/5488c02ead2b0a77b0a8a96a97c512] Aug-17 07:59:37.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 336; name: POREC:digest_align_annotate (327); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/5488c02ead2b0a77b0a8a96a97c512] Aug-17 07:59:37.979 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (327)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/5488c02ead2b0a77b0a8a96a97c512/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 07:59:37.980 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 07:59:38.005 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 07:59:38.005 [Task submitter] INFO nextflow.Session - [3b/1ab69a] Submitted process > POREC:digest_align_annotate (329) Aug-17 07:59:52.055 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 339; name: POREC:digest_align_annotate (330); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/71ac5e6c955f696a51e472e07eb5b7] ~> TaskHandler[id: 341; name: POREC:digest_align_annotate (332); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/e4472833ae452c18cf2b2e74d52a90] ~> TaskHandler[id: 343; name: POREC:digest_align_annotate (334); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6d62287d6c8a7a98338f596e85e849] ~> TaskHandler[id: 340; name: POREC:digest_align_annotate (331); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/732123c0b6bfafd1322dc4132628c5] ~> TaskHandler[id: 373; name: POREC:digest_align_annotate (364); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/026736269f0458f81a1f19d94ce4b0] ~> TaskHandler[id: 342; name: POREC:digest_align_annotate (333); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/d402a04bcbc1c7d94edfa82f15776d] ~> TaskHandler[id: 375; name: POREC:digest_align_annotate (366); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/ba7865d450c7c04e473ced990bb49f] ~> TaskHandler[id: 344; name: POREC:digest_align_annotate (335); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/2f8fc9f42121c8253a09a91bd0eb8b] ~> TaskHandler[id: 378; name: POREC:digest_align_annotate (369); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/d72cf172ba115580c45558b25d45e1] ~> TaskHandler[id: 345; name: POREC:digest_align_annotate (336); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/5b171253f5f677575a87113836c15e] .. remaining tasks omitted. Aug-17 08:00:59.146 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 338; name: POREC:digest_align_annotate (329); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/1ab69aac4491746828cfd18185df02] Aug-17 08:00:59.147 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (329)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/1ab69aac4491746828cfd18185df02/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:00:59.148 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:00:59.152 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:00:59.152 [Task submitter] INFO nextflow.Session - [20/71ac5e] Submitted process > POREC:digest_align_annotate (330) Aug-17 08:02:22.015 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 339; name: POREC:digest_align_annotate (330); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/71ac5e6c955f696a51e472e07eb5b7] Aug-17 08:02:22.016 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (330)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/71ac5e6c955f696a51e472e07eb5b7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:02:22.021 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:02:22.035 [Task submitter] INFO nextflow.Session - [f9/e44728] Submitted process > POREC:digest_align_annotate (332) Aug-17 08:02:22.036 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:03:35.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 341; name: POREC:digest_align_annotate (332); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/e4472833ae452c18cf2b2e74d52a90] Aug-17 08:03:42.986 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 341; name: POREC:digest_align_annotate (332); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/e4472833ae452c18cf2b2e74d52a90] Aug-17 08:03:42.987 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (332)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/e4472833ae452c18cf2b2e74d52a90/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:03:42.987 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:03:42.993 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:03:42.993 [Task submitter] INFO nextflow.Session - [41/6d6228] Submitted process > POREC:digest_align_annotate (334) Aug-17 08:04:52.213 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 340; name: POREC:digest_align_annotate (331); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/732123c0b6bfafd1322dc4132628c5] ~> TaskHandler[id: 373; name: POREC:digest_align_annotate (364); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/026736269f0458f81a1f19d94ce4b0] ~> TaskHandler[id: 342; name: POREC:digest_align_annotate (333); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/d402a04bcbc1c7d94edfa82f15776d] ~> TaskHandler[id: 375; name: POREC:digest_align_annotate (366); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/ba7865d450c7c04e473ced990bb49f] ~> TaskHandler[id: 344; name: POREC:digest_align_annotate (335); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/2f8fc9f42121c8253a09a91bd0eb8b] ~> TaskHandler[id: 378; name: POREC:digest_align_annotate (369); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/d72cf172ba115580c45558b25d45e1] ~> TaskHandler[id: 345; name: POREC:digest_align_annotate (336); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/5b171253f5f677575a87113836c15e] ~> TaskHandler[id: 346; name: POREC:digest_align_annotate (337); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e7eee680af32953050f61b48728eaa] ~> TaskHandler[id: 347; name: POREC:digest_align_annotate (338); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/652f4cccbdfb76a1b3ec44d7f156bc] ~> TaskHandler[id: 348; name: POREC:digest_align_annotate (339); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/2ef7bcb34b56ea46bda7ab66708f25] .. remaining tasks omitted. Aug-17 08:05:05.453 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 343; name: POREC:digest_align_annotate (334); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6d62287d6c8a7a98338f596e85e849] Aug-17 08:05:05.453 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (334)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/6d62287d6c8a7a98338f596e85e849/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:05:05.454 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:05:05.459 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:05:05.459 [Task submitter] INFO nextflow.Session - [16/732123] Submitted process > POREC:digest_align_annotate (331) Aug-17 08:06:29.555 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 340; name: POREC:digest_align_annotate (331); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/732123c0b6bfafd1322dc4132628c5] Aug-17 08:06:29.556 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (331)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/732123c0b6bfafd1322dc4132628c5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:06:29.557 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:06:29.577 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:06:29.577 [Task submitter] INFO nextflow.Session - [9c/026736] Submitted process > POREC:digest_align_annotate (364) Aug-17 08:07:53.641 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 373; name: POREC:digest_align_annotate (364); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/026736269f0458f81a1f19d94ce4b0] Aug-17 08:07:53.643 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (364)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/026736269f0458f81a1f19d94ce4b0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:07:53.644 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:07:53.706 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:07:53.706 [Task submitter] INFO nextflow.Session - [86/d402a0] Submitted process > POREC:digest_align_annotate (333) Aug-17 08:08:35.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 342; name: POREC:digest_align_annotate (333); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/d402a04bcbc1c7d94edfa82f15776d] Aug-17 08:09:24.780 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 342; name: POREC:digest_align_annotate (333); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/d402a04bcbc1c7d94edfa82f15776d] Aug-17 08:09:24.781 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (333)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/d402a04bcbc1c7d94edfa82f15776d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:09:24.802 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:09:24.802 [Task submitter] INFO nextflow.Session - [ca/ba7865] Submitted process > POREC:digest_align_annotate (366) Aug-17 08:09:24.803 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:09:52.897 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 344; name: POREC:digest_align_annotate (335); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/2f8fc9f42121c8253a09a91bd0eb8b] ~> TaskHandler[id: 378; name: POREC:digest_align_annotate (369); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/d72cf172ba115580c45558b25d45e1] ~> TaskHandler[id: 345; name: POREC:digest_align_annotate (336); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/5b171253f5f677575a87113836c15e] ~> TaskHandler[id: 346; name: POREC:digest_align_annotate (337); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e7eee680af32953050f61b48728eaa] ~> TaskHandler[id: 347; name: POREC:digest_align_annotate (338); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/652f4cccbdfb76a1b3ec44d7f156bc] ~> TaskHandler[id: 348; name: POREC:digest_align_annotate (339); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/2ef7bcb34b56ea46bda7ab66708f25] ~> TaskHandler[id: 349; name: POREC:digest_align_annotate (340); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/5456205de6c8540d4b57df2473191a] ~> TaskHandler[id: 350; name: POREC:digest_align_annotate (341); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/af2fa73658022c94cff152f8dc9c2f] ~> TaskHandler[id: 352; name: POREC:digest_align_annotate (343); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d7a2f8cea8a8d9309b98b6f4c2a302] ~> TaskHandler[id: 354; name: POREC:digest_align_annotate (345); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c4a16dabe37285fbd80008ce704a78] .. remaining tasks omitted. Aug-17 08:11:06.971 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 375; name: POREC:digest_align_annotate (366); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/ba7865d450c7c04e473ced990bb49f] Aug-17 08:11:06.972 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (366)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/ba7865d450c7c04e473ced990bb49f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:11:06.973 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:11:06.978 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:11:06.978 [Task submitter] INFO nextflow.Session - [7b/2f8fc9] Submitted process > POREC:digest_align_annotate (335) Aug-17 08:12:41.355 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 344; name: POREC:digest_align_annotate (335); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/2f8fc9f42121c8253a09a91bd0eb8b] Aug-17 08:12:41.374 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (335)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/2f8fc9f42121c8253a09a91bd0eb8b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:12:41.375 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:12:41.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:12:41.379 [Task submitter] INFO nextflow.Session - [ef/d72cf1] Submitted process > POREC:digest_align_annotate (369) Aug-17 08:13:35.923 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 378; name: POREC:digest_align_annotate (369); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/d72cf172ba115580c45558b25d45e1] Aug-17 08:14:12.665 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 378; name: POREC:digest_align_annotate (369); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/d72cf172ba115580c45558b25d45e1] Aug-17 08:14:12.666 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (369)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/d72cf172ba115580c45558b25d45e1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:14:12.667 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:14:12.693 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:14:12.694 [Task submitter] INFO nextflow.Session - [d0/5b1712] Submitted process > POREC:digest_align_annotate (336) Aug-17 08:14:53.834 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 346; name: POREC:digest_align_annotate (337); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e7eee680af32953050f61b48728eaa] ~> TaskHandler[id: 347; name: POREC:digest_align_annotate (338); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/652f4cccbdfb76a1b3ec44d7f156bc] ~> TaskHandler[id: 348; name: POREC:digest_align_annotate (339); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/2ef7bcb34b56ea46bda7ab66708f25] ~> TaskHandler[id: 349; name: POREC:digest_align_annotate (340); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/5456205de6c8540d4b57df2473191a] ~> TaskHandler[id: 350; name: POREC:digest_align_annotate (341); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/af2fa73658022c94cff152f8dc9c2f] ~> TaskHandler[id: 352; name: POREC:digest_align_annotate (343); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d7a2f8cea8a8d9309b98b6f4c2a302] ~> TaskHandler[id: 354; name: POREC:digest_align_annotate (345); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c4a16dabe37285fbd80008ce704a78] ~> TaskHandler[id: 353; name: POREC:digest_align_annotate (344); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/07df67bb407cd294c1b2e6daea2d1a] ~> TaskHandler[id: 355; name: POREC:digest_align_annotate (346); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/1d77949485da570d637c0602c992b1] ~> TaskHandler[id: 356; name: POREC:digest_align_annotate (347); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/7f8db593c8340b2379185635ab9db3] .. remaining tasks omitted. Aug-17 08:15:48.968 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 345; name: POREC:digest_align_annotate (336); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/5b171253f5f677575a87113836c15e] Aug-17 08:15:48.969 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (336)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/5b171253f5f677575a87113836c15e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:15:48.970 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:15:49.006 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:15:49.006 [Task submitter] INFO nextflow.Session - [6f/e7eee6] Submitted process > POREC:digest_align_annotate (337) Aug-17 08:17:28.540 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 346; name: POREC:digest_align_annotate (337); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e7eee680af32953050f61b48728eaa] Aug-17 08:17:28.540 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (337)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/e7eee680af32953050f61b48728eaa/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:17:28.541 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:17:28.569 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:17:28.569 [Task submitter] INFO nextflow.Session - [db/652f4c] Submitted process > POREC:digest_align_annotate (338) Aug-17 08:18:35.941 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 347; name: POREC:digest_align_annotate (338); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/652f4cccbdfb76a1b3ec44d7f156bc] Aug-17 08:19:06.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 347; name: POREC:digest_align_annotate (338); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/652f4cccbdfb76a1b3ec44d7f156bc] Aug-17 08:19:06.706 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (338)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/652f4cccbdfb76a1b3ec44d7f156bc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:19:06.707 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:19:06.721 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:19:06.721 [Task submitter] INFO nextflow.Session - [be/2ef7bc] Submitted process > POREC:digest_align_annotate (339) Aug-17 08:19:53.875 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 349; name: POREC:digest_align_annotate (340); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/5456205de6c8540d4b57df2473191a] ~> TaskHandler[id: 350; name: POREC:digest_align_annotate (341); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/af2fa73658022c94cff152f8dc9c2f] ~> TaskHandler[id: 352; name: POREC:digest_align_annotate (343); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d7a2f8cea8a8d9309b98b6f4c2a302] ~> TaskHandler[id: 354; name: POREC:digest_align_annotate (345); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c4a16dabe37285fbd80008ce704a78] ~> TaskHandler[id: 353; name: POREC:digest_align_annotate (344); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/07df67bb407cd294c1b2e6daea2d1a] ~> TaskHandler[id: 355; name: POREC:digest_align_annotate (346); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/1d77949485da570d637c0602c992b1] ~> TaskHandler[id: 356; name: POREC:digest_align_annotate (347); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/7f8db593c8340b2379185635ab9db3] ~> TaskHandler[id: 357; name: POREC:digest_align_annotate (348); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/80494c6888138326256cfa748abd8f] ~> TaskHandler[id: 358; name: POREC:digest_align_annotate (349); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/5b44bccce0c03d05d9e7eba72d345e] ~> TaskHandler[id: 359; name: POREC:digest_align_annotate (350); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/7b61fcd03ac82d48d039a3e4089b87] .. remaining tasks omitted. Aug-17 08:20:43.661 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 348; name: POREC:digest_align_annotate (339); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/2ef7bcb34b56ea46bda7ab66708f25] Aug-17 08:20:43.661 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (339)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/2ef7bcb34b56ea46bda7ab66708f25/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:20:43.662 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:20:43.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:20:43.692 [Task submitter] INFO nextflow.Session - [8d/545620] Submitted process > POREC:digest_align_annotate (340) Aug-17 08:22:26.025 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 349; name: POREC:digest_align_annotate (340); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/5456205de6c8540d4b57df2473191a] Aug-17 08:22:26.028 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (340)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/5456205de6c8540d4b57df2473191a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:22:26.029 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:22:26.061 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:22:26.084 [Task submitter] INFO nextflow.Session - [be/af2fa7] Submitted process > POREC:digest_align_annotate (341) Aug-17 08:23:36.040 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 350; name: POREC:digest_align_annotate (341); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/af2fa73658022c94cff152f8dc9c2f] Aug-17 08:24:00.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 350; name: POREC:digest_align_annotate (341); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/af2fa73658022c94cff152f8dc9c2f] Aug-17 08:24:00.721 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (341)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/af2fa73658022c94cff152f8dc9c2f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:24:00.722 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:24:00.729 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:24:00.729 [Task submitter] INFO nextflow.Session - [df/d7a2f8] Submitted process > POREC:digest_align_annotate (343) Aug-17 08:24:53.892 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 354; name: POREC:digest_align_annotate (345); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c4a16dabe37285fbd80008ce704a78] ~> TaskHandler[id: 353; name: POREC:digest_align_annotate (344); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/07df67bb407cd294c1b2e6daea2d1a] ~> TaskHandler[id: 355; name: POREC:digest_align_annotate (346); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/1d77949485da570d637c0602c992b1] ~> TaskHandler[id: 356; name: POREC:digest_align_annotate (347); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/7f8db593c8340b2379185635ab9db3] ~> TaskHandler[id: 357; name: POREC:digest_align_annotate (348); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/80494c6888138326256cfa748abd8f] ~> TaskHandler[id: 358; name: POREC:digest_align_annotate (349); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/5b44bccce0c03d05d9e7eba72d345e] ~> TaskHandler[id: 359; name: POREC:digest_align_annotate (350); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/7b61fcd03ac82d48d039a3e4089b87] ~> TaskHandler[id: 360; name: POREC:digest_align_annotate (351); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/038f2ccd92063b04de28855385a25b] ~> TaskHandler[id: 362; name: POREC:digest_align_annotate (353); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/2d941229a0bd304f636be650aa97bf] ~> TaskHandler[id: 363; name: POREC:digest_align_annotate (354); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/66c052841ef559ecce4c94d0c76126] .. remaining tasks omitted. Aug-17 08:25:21.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 352; name: POREC:digest_align_annotate (343); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d7a2f8cea8a8d9309b98b6f4c2a302] Aug-17 08:25:21.937 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (343)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d7a2f8cea8a8d9309b98b6f4c2a302/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:25:21.939 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:25:21.958 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:25:21.958 [Task submitter] INFO nextflow.Session - [18/c4a16d] Submitted process > POREC:digest_align_annotate (345) Aug-17 08:26:47.013 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 354; name: POREC:digest_align_annotate (345); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c4a16dabe37285fbd80008ce704a78] Aug-17 08:26:47.015 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (345)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c4a16dabe37285fbd80008ce704a78/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:26:47.016 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:26:47.023 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:26:47.023 [Task submitter] INFO nextflow.Session - [34/07df67] Submitted process > POREC:digest_align_annotate (344) Aug-17 08:28:10.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 353; name: POREC:digest_align_annotate (344); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/07df67bb407cd294c1b2e6daea2d1a] Aug-17 08:28:10.866 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (344)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/07df67bb407cd294c1b2e6daea2d1a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:28:10.866 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:28:10.897 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:28:10.897 [Task submitter] INFO nextflow.Session - [f5/1d7794] Submitted process > POREC:digest_align_annotate (346) Aug-17 08:28:36.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 355; name: POREC:digest_align_annotate (346); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/1d77949485da570d637c0602c992b1] Aug-17 08:29:31.159 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 355; name: POREC:digest_align_annotate (346); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/1d77949485da570d637c0602c992b1] Aug-17 08:29:31.160 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (346)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/1d77949485da570d637c0602c992b1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:29:31.161 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:29:31.166 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:29:31.196 [Task submitter] INFO nextflow.Session - [79/7f8db5] Submitted process > POREC:digest_align_annotate (347) Aug-17 08:29:54.275 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 357; name: POREC:digest_align_annotate (348); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/80494c6888138326256cfa748abd8f] ~> TaskHandler[id: 358; name: POREC:digest_align_annotate (349); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/5b44bccce0c03d05d9e7eba72d345e] ~> TaskHandler[id: 359; name: POREC:digest_align_annotate (350); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/7b61fcd03ac82d48d039a3e4089b87] ~> TaskHandler[id: 360; name: POREC:digest_align_annotate (351); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/038f2ccd92063b04de28855385a25b] ~> TaskHandler[id: 362; name: POREC:digest_align_annotate (353); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/2d941229a0bd304f636be650aa97bf] ~> TaskHandler[id: 363; name: POREC:digest_align_annotate (354); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/66c052841ef559ecce4c94d0c76126] ~> TaskHandler[id: 364; name: POREC:digest_align_annotate (355); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/9145c8ff445b7594393d1b1311f3f7] ~> TaskHandler[id: 366; name: POREC:digest_align_annotate (357); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/91abe2d0a35c6b432f35767157ee5a] ~> TaskHandler[id: 367; name: POREC:digest_align_annotate (358); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/d9d71e7d355eed8937f29781436e24] ~> TaskHandler[id: 368; name: POREC:digest_align_annotate (359); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/0919c7867ac292227080f7baece521] .. remaining tasks omitted. Aug-17 08:30:52.620 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 356; name: POREC:digest_align_annotate (347); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/7f8db593c8340b2379185635ab9db3] Aug-17 08:30:52.622 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (347)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/7f8db593c8340b2379185635ab9db3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:30:52.624 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:30:52.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:30:52.693 [Task submitter] INFO nextflow.Session - [1f/80494c] Submitted process > POREC:digest_align_annotate (348) Aug-17 08:32:16.440 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 357; name: POREC:digest_align_annotate (348); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/80494c6888138326256cfa748abd8f] Aug-17 08:32:16.440 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (348)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/80494c6888138326256cfa748abd8f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:32:16.441 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:32:16.446 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:32:16.459 [Task submitter] INFO nextflow.Session - [d2/5b44bc] Submitted process > POREC:digest_align_annotate (349) Aug-17 08:33:36.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 358; name: POREC:digest_align_annotate (349); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/5b44bccce0c03d05d9e7eba72d345e] Aug-17 08:33:38.251 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 358; name: POREC:digest_align_annotate (349); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/5b44bccce0c03d05d9e7eba72d345e] Aug-17 08:33:38.252 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (349)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/5b44bccce0c03d05d9e7eba72d345e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:33:38.253 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:33:38.257 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:33:38.257 [Task submitter] INFO nextflow.Session - [e0/7b61fc] Submitted process > POREC:digest_align_annotate (350) Aug-17 08:34:54.508 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 360; name: POREC:digest_align_annotate (351); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/038f2ccd92063b04de28855385a25b] ~> TaskHandler[id: 362; name: POREC:digest_align_annotate (353); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/2d941229a0bd304f636be650aa97bf] ~> TaskHandler[id: 363; name: POREC:digest_align_annotate (354); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/66c052841ef559ecce4c94d0c76126] ~> TaskHandler[id: 364; name: POREC:digest_align_annotate (355); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/9145c8ff445b7594393d1b1311f3f7] ~> TaskHandler[id: 366; name: POREC:digest_align_annotate (357); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/91abe2d0a35c6b432f35767157ee5a] ~> TaskHandler[id: 367; name: POREC:digest_align_annotate (358); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/d9d71e7d355eed8937f29781436e24] ~> TaskHandler[id: 368; name: POREC:digest_align_annotate (359); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/0919c7867ac292227080f7baece521] ~> TaskHandler[id: 369; name: POREC:digest_align_annotate (360); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/37cdd168997d9bc133e05ae704be87] ~> TaskHandler[id: 370; name: POREC:digest_align_annotate (361); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/23b139231cd321304ef03684c1065e] ~> TaskHandler[id: 371; name: POREC:digest_align_annotate (362); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/672613849ab91804e454e9218f8b21] .. remaining tasks omitted. Aug-17 08:35:03.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 359; name: POREC:digest_align_annotate (350); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/7b61fcd03ac82d48d039a3e4089b87] Aug-17 08:35:03.890 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (350)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/7b61fcd03ac82d48d039a3e4089b87/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:35:03.893 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:35:03.913 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:35:03.913 [Task submitter] INFO nextflow.Session - [8e/038f2c] Submitted process > POREC:digest_align_annotate (351) Aug-17 08:36:28.757 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 360; name: POREC:digest_align_annotate (351); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/038f2ccd92063b04de28855385a25b] Aug-17 08:36:28.759 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (351)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/038f2ccd92063b04de28855385a25b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:36:28.761 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:36:28.784 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:36:28.784 [Task submitter] INFO nextflow.Session - [18/2d9412] Submitted process > POREC:digest_align_annotate (353) Aug-17 08:37:50.672 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 362; name: POREC:digest_align_annotate (353); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/2d941229a0bd304f636be650aa97bf] Aug-17 08:37:50.673 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (353)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/2d941229a0bd304f636be650aa97bf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:37:50.674 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:37:50.679 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:37:50.680 [Task submitter] INFO nextflow.Session - [81/66c052] Submitted process > POREC:digest_align_annotate (354) Aug-17 08:38:36.140 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 363; name: POREC:digest_align_annotate (354); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/66c052841ef559ecce4c94d0c76126] Aug-17 08:39:26.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 363; name: POREC:digest_align_annotate (354); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/66c052841ef559ecce4c94d0c76126] Aug-17 08:39:26.139 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (354)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/66c052841ef559ecce4c94d0c76126/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:39:26.174 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:39:26.199 [Task submitter] INFO nextflow.Session - [21/9145c8] Submitted process > POREC:digest_align_annotate (355) Aug-17 08:39:26.200 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:39:55.301 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 366; name: POREC:digest_align_annotate (357); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/91abe2d0a35c6b432f35767157ee5a] ~> TaskHandler[id: 367; name: POREC:digest_align_annotate (358); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/d9d71e7d355eed8937f29781436e24] ~> TaskHandler[id: 368; name: POREC:digest_align_annotate (359); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/0919c7867ac292227080f7baece521] ~> TaskHandler[id: 369; name: POREC:digest_align_annotate (360); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/37cdd168997d9bc133e05ae704be87] ~> TaskHandler[id: 370; name: POREC:digest_align_annotate (361); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/23b139231cd321304ef03684c1065e] ~> TaskHandler[id: 371; name: POREC:digest_align_annotate (362); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/672613849ab91804e454e9218f8b21] ~> TaskHandler[id: 372; name: POREC:digest_align_annotate (363); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/dadd0e3d0bc007b6377e2e645aa210] ~> TaskHandler[id: 374; name: POREC:digest_align_annotate (365); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2adddd85ef1bbb167770f53fa12251] ~> TaskHandler[id: 377; name: POREC:digest_align_annotate (368); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/6ac28a1b8d64893c7e36d66dd3c99a] ~> TaskHandler[id: 379; name: POREC:digest_align_annotate (370); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/9e755a4b12c769ae2f369886cce6f2] .. remaining tasks omitted. Aug-17 08:40:50.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 364; name: POREC:digest_align_annotate (355); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/9145c8ff445b7594393d1b1311f3f7] Aug-17 08:40:50.670 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (355)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/9145c8ff445b7594393d1b1311f3f7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:40:50.671 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:40:50.682 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:40:50.682 [Task submitter] INFO nextflow.Session - [3e/91abe2] Submitted process > POREC:digest_align_annotate (357) Aug-17 08:42:19.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 366; name: POREC:digest_align_annotate (357); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/91abe2d0a35c6b432f35767157ee5a] Aug-17 08:42:19.964 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (357)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/91abe2d0a35c6b432f35767157ee5a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:42:19.984 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:42:20.016 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:42:20.016 [Task submitter] INFO nextflow.Session - [24/d9d71e] Submitted process > POREC:digest_align_annotate (358) Aug-17 08:43:36.152 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 367; name: POREC:digest_align_annotate (358); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/d9d71e7d355eed8937f29781436e24] Aug-17 08:43:43.079 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 367; name: POREC:digest_align_annotate (358); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/d9d71e7d355eed8937f29781436e24] Aug-17 08:43:43.080 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (358)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/d9d71e7d355eed8937f29781436e24/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:43:43.081 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:43:43.087 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:43:43.087 [Task submitter] INFO nextflow.Session - [aa/0919c7] Submitted process > POREC:digest_align_annotate (359) Aug-17 08:44:55.320 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 369; name: POREC:digest_align_annotate (360); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/37cdd168997d9bc133e05ae704be87] ~> TaskHandler[id: 370; name: POREC:digest_align_annotate (361); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/23b139231cd321304ef03684c1065e] ~> TaskHandler[id: 371; name: POREC:digest_align_annotate (362); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/672613849ab91804e454e9218f8b21] ~> TaskHandler[id: 372; name: POREC:digest_align_annotate (363); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/dadd0e3d0bc007b6377e2e645aa210] ~> TaskHandler[id: 374; name: POREC:digest_align_annotate (365); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2adddd85ef1bbb167770f53fa12251] ~> TaskHandler[id: 377; name: POREC:digest_align_annotate (368); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/6ac28a1b8d64893c7e36d66dd3c99a] ~> TaskHandler[id: 379; name: POREC:digest_align_annotate (370); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/9e755a4b12c769ae2f369886cce6f2] ~> TaskHandler[id: 408; name: POREC:digest_align_annotate (399); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/477054e9f1d35e42e966e9eafcaaf5] ~> TaskHandler[id: 376; name: POREC:digest_align_annotate (367); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/3c0bfe392c8ae66fa2205c3d8650b6] ~> TaskHandler[id: 380; name: POREC:digest_align_annotate (371); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/06b3fbb4b672207012a19e24c3e0ae] .. remaining tasks omitted. Aug-17 08:45:05.078 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 368; name: POREC:digest_align_annotate (359); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/0919c7867ac292227080f7baece521] Aug-17 08:45:05.079 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (359)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/0919c7867ac292227080f7baece521/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:45:05.080 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:45:05.085 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:45:05.085 [Task submitter] INFO nextflow.Session - [de/37cdd1] Submitted process > POREC:digest_align_annotate (360) Aug-17 08:46:26.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 369; name: POREC:digest_align_annotate (360); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/37cdd168997d9bc133e05ae704be87] Aug-17 08:46:26.858 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (360)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/37cdd168997d9bc133e05ae704be87/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:46:26.859 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:46:26.882 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:46:26.883 [Task submitter] INFO nextflow.Session - [17/23b139] Submitted process > POREC:digest_align_annotate (361) Aug-17 08:47:48.702 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 370; name: POREC:digest_align_annotate (361); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/23b139231cd321304ef03684c1065e] Aug-17 08:47:48.703 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (361)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/23b139231cd321304ef03684c1065e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:47:48.704 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:47:48.725 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:47:48.726 [Task submitter] INFO nextflow.Session - [d3/672613] Submitted process > POREC:digest_align_annotate (362) Aug-17 08:48:36.162 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 371; name: POREC:digest_align_annotate (362); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/672613849ab91804e454e9218f8b21] Aug-17 08:49:11.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 371; name: POREC:digest_align_annotate (362); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/672613849ab91804e454e9218f8b21] Aug-17 08:49:11.748 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (362)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/672613849ab91804e454e9218f8b21/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:49:11.750 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:49:11.767 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:49:11.768 [Task submitter] INFO nextflow.Session - [e5/dadd0e] Submitted process > POREC:digest_align_annotate (363) Aug-17 08:49:55.913 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 374; name: POREC:digest_align_annotate (365); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2adddd85ef1bbb167770f53fa12251] ~> TaskHandler[id: 377; name: POREC:digest_align_annotate (368); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/6ac28a1b8d64893c7e36d66dd3c99a] ~> TaskHandler[id: 379; name: POREC:digest_align_annotate (370); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/9e755a4b12c769ae2f369886cce6f2] ~> TaskHandler[id: 408; name: POREC:digest_align_annotate (399); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/477054e9f1d35e42e966e9eafcaaf5] ~> TaskHandler[id: 376; name: POREC:digest_align_annotate (367); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/3c0bfe392c8ae66fa2205c3d8650b6] ~> TaskHandler[id: 380; name: POREC:digest_align_annotate (371); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/06b3fbb4b672207012a19e24c3e0ae] ~> TaskHandler[id: 383; name: POREC:digest_align_annotate (374); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/8045911c48cb839cb3cff245317cb4] ~> TaskHandler[id: 381; name: POREC:digest_align_annotate (372); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/4afa34931131edb0019023cad91736] ~> TaskHandler[id: 382; name: POREC:digest_align_annotate (373); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/e5d19bc6cda47e5f659f2cd608eaf7] ~> TaskHandler[id: 384; name: POREC:digest_align_annotate (375); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/0ff9900bb3334ce751f8a599f23b1a] .. remaining tasks omitted. Aug-17 08:50:46.129 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 372; name: POREC:digest_align_annotate (363); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/dadd0e3d0bc007b6377e2e645aa210] Aug-17 08:50:46.130 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (363)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/dadd0e3d0bc007b6377e2e645aa210/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:50:46.131 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:50:46.138 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:50:46.138 [Task submitter] INFO nextflow.Session - [9b/2adddd] Submitted process > POREC:digest_align_annotate (365) Aug-17 08:52:40.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 374; name: POREC:digest_align_annotate (365); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2adddd85ef1bbb167770f53fa12251] Aug-17 08:52:40.807 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (365)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2adddd85ef1bbb167770f53fa12251/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:52:40.808 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:52:40.824 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:52:40.824 [Task submitter] INFO nextflow.Session - [e4/6ac28a] Submitted process > POREC:digest_align_annotate (368) Aug-17 08:53:36.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 377; name: POREC:digest_align_annotate (368); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/6ac28a1b8d64893c7e36d66dd3c99a] Aug-17 08:54:11.071 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 377; name: POREC:digest_align_annotate (368); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/6ac28a1b8d64893c7e36d66dd3c99a] Aug-17 08:54:11.072 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (368)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/6ac28a1b8d64893c7e36d66dd3c99a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:54:11.073 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:54:11.080 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:54:11.080 [Task submitter] INFO nextflow.Session - [33/9e755a] Submitted process > POREC:digest_align_annotate (370) Aug-17 08:54:56.229 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 408; name: POREC:digest_align_annotate (399); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/477054e9f1d35e42e966e9eafcaaf5] ~> TaskHandler[id: 376; name: POREC:digest_align_annotate (367); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/3c0bfe392c8ae66fa2205c3d8650b6] ~> TaskHandler[id: 380; name: POREC:digest_align_annotate (371); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/06b3fbb4b672207012a19e24c3e0ae] ~> TaskHandler[id: 383; name: POREC:digest_align_annotate (374); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/8045911c48cb839cb3cff245317cb4] ~> TaskHandler[id: 381; name: POREC:digest_align_annotate (372); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/4afa34931131edb0019023cad91736] ~> TaskHandler[id: 382; name: POREC:digest_align_annotate (373); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/e5d19bc6cda47e5f659f2cd608eaf7] ~> TaskHandler[id: 384; name: POREC:digest_align_annotate (375); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/0ff9900bb3334ce751f8a599f23b1a] ~> TaskHandler[id: 385; name: POREC:digest_align_annotate (376); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/0d20c811e501b4e08ef1b2f2ab5581] ~> TaskHandler[id: 386; name: POREC:digest_align_annotate (377); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/c6fd937f51dfb7605c9925ab253a07] ~> TaskHandler[id: 387; name: POREC:digest_align_annotate (378); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/e603c0b401eaa93ef1ec941cfdab25] .. remaining tasks omitted. Aug-17 08:55:44.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 379; name: POREC:digest_align_annotate (370); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/9e755a4b12c769ae2f369886cce6f2] Aug-17 08:55:44.245 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (370)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/9e755a4b12c769ae2f369886cce6f2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:55:44.246 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:55:44.302 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:55:44.302 [Task submitter] INFO nextflow.Session - [30/477054] Submitted process > POREC:digest_align_annotate (399) Aug-17 08:57:18.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 408; name: POREC:digest_align_annotate (399); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/477054e9f1d35e42e966e9eafcaaf5] Aug-17 08:57:18.840 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (399)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/477054e9f1d35e42e966e9eafcaaf5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:57:18.841 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:57:18.849 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:57:18.849 [Task submitter] INFO nextflow.Session - [07/3c0bfe] Submitted process > POREC:digest_align_annotate (367) Aug-17 08:58:36.257 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 376; name: POREC:digest_align_annotate (367); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/3c0bfe392c8ae66fa2205c3d8650b6] Aug-17 08:59:08.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 376; name: POREC:digest_align_annotate (367); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/3c0bfe392c8ae66fa2205c3d8650b6] Aug-17 08:59:08.091 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (367)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/3c0bfe392c8ae66fa2205c3d8650b6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 08:59:08.092 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 08:59:08.109 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 08:59:08.109 [Task submitter] INFO nextflow.Session - [41/06b3fb] Submitted process > POREC:digest_align_annotate (371) Aug-17 08:59:56.285 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 383; name: POREC:digest_align_annotate (374); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/8045911c48cb839cb3cff245317cb4] ~> TaskHandler[id: 381; name: POREC:digest_align_annotate (372); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/4afa34931131edb0019023cad91736] ~> TaskHandler[id: 382; name: POREC:digest_align_annotate (373); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/e5d19bc6cda47e5f659f2cd608eaf7] ~> TaskHandler[id: 384; name: POREC:digest_align_annotate (375); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/0ff9900bb3334ce751f8a599f23b1a] ~> TaskHandler[id: 385; name: POREC:digest_align_annotate (376); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/0d20c811e501b4e08ef1b2f2ab5581] ~> TaskHandler[id: 386; name: POREC:digest_align_annotate (377); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/c6fd937f51dfb7605c9925ab253a07] ~> TaskHandler[id: 387; name: POREC:digest_align_annotate (378); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/e603c0b401eaa93ef1ec941cfdab25] ~> TaskHandler[id: 388; name: POREC:digest_align_annotate (379); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5a965d997946b19d9c63b8a3114381] ~> TaskHandler[id: 389; name: POREC:digest_align_annotate (380); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/7aaf0e3db89c823add474fe956175c] ~> TaskHandler[id: 390; name: POREC:digest_align_annotate (381); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/fa91e78ce13c6d33188ba27d84463f] .. remaining tasks omitted. Aug-17 09:00:45.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 380; name: POREC:digest_align_annotate (371); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/06b3fbb4b672207012a19e24c3e0ae] Aug-17 09:00:45.294 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (371)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/06b3fbb4b672207012a19e24c3e0ae/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:00:45.294 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:00:45.301 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:00:45.301 [Task submitter] INFO nextflow.Session - [76/804591] Submitted process > POREC:digest_align_annotate (374) Aug-17 09:02:21.985 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 383; name: POREC:digest_align_annotate (374); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/8045911c48cb839cb3cff245317cb4] Aug-17 09:02:21.987 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (374)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/8045911c48cb839cb3cff245317cb4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:02:21.988 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:02:21.995 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:02:22.015 [Task submitter] INFO nextflow.Session - [14/4afa34] Submitted process > POREC:digest_align_annotate (372) Aug-17 09:03:36.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 381; name: POREC:digest_align_annotate (372); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/4afa34931131edb0019023cad91736] Aug-17 09:03:58.034 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 381; name: POREC:digest_align_annotate (372); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/4afa34931131edb0019023cad91736] Aug-17 09:03:58.035 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (372)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/4afa34931131edb0019023cad91736/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:03:58.035 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:03:58.063 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:03:58.063 [Task submitter] INFO nextflow.Session - [99/e5d19b] Submitted process > POREC:digest_align_annotate (373) Aug-17 09:04:57.258 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 384; name: POREC:digest_align_annotate (375); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/0ff9900bb3334ce751f8a599f23b1a] ~> TaskHandler[id: 385; name: POREC:digest_align_annotate (376); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/0d20c811e501b4e08ef1b2f2ab5581] ~> TaskHandler[id: 386; name: POREC:digest_align_annotate (377); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/c6fd937f51dfb7605c9925ab253a07] ~> TaskHandler[id: 387; name: POREC:digest_align_annotate (378); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/e603c0b401eaa93ef1ec941cfdab25] ~> TaskHandler[id: 388; name: POREC:digest_align_annotate (379); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5a965d997946b19d9c63b8a3114381] ~> TaskHandler[id: 389; name: POREC:digest_align_annotate (380); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/7aaf0e3db89c823add474fe956175c] ~> TaskHandler[id: 390; name: POREC:digest_align_annotate (381); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/fa91e78ce13c6d33188ba27d84463f] ~> TaskHandler[id: 391; name: POREC:digest_align_annotate (382); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/55b18176af7b80bc81f8fced447f71] ~> TaskHandler[id: 393; name: POREC:digest_align_annotate (384); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/20f0d424650bb3bf461287f3ceaa76] ~> TaskHandler[id: 392; name: POREC:digest_align_annotate (383); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/6814f9da496162a1cd52a5663e85ad] .. remaining tasks omitted. Aug-17 09:05:37.259 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 382; name: POREC:digest_align_annotate (373); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/e5d19bc6cda47e5f659f2cd608eaf7] Aug-17 09:05:37.267 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (373)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/e5d19bc6cda47e5f659f2cd608eaf7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:05:37.269 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:05:37.276 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:05:37.276 [Task submitter] INFO nextflow.Session - [4e/0ff990] Submitted process > POREC:digest_align_annotate (375) Aug-17 09:07:18.359 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 384; name: POREC:digest_align_annotate (375); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/0ff9900bb3334ce751f8a599f23b1a] Aug-17 09:07:18.360 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (375)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/0ff9900bb3334ce751f8a599f23b1a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:07:18.361 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:07:18.389 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:07:18.389 [Task submitter] INFO nextflow.Session - [34/0d20c8] Submitted process > POREC:digest_align_annotate (376) Aug-17 09:08:36.366 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 385; name: POREC:digest_align_annotate (376); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/0d20c811e501b4e08ef1b2f2ab5581] Aug-17 09:08:42.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 385; name: POREC:digest_align_annotate (376); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/0d20c811e501b4e08ef1b2f2ab5581] Aug-17 09:08:42.978 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (376)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/0d20c811e501b4e08ef1b2f2ab5581/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:08:42.980 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:08:42.990 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:08:42.990 [Task submitter] INFO nextflow.Session - [53/c6fd93] Submitted process > POREC:digest_align_annotate (377) Aug-17 09:09:58.233 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 387; name: POREC:digest_align_annotate (378); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/e603c0b401eaa93ef1ec941cfdab25] ~> TaskHandler[id: 388; name: POREC:digest_align_annotate (379); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5a965d997946b19d9c63b8a3114381] ~> TaskHandler[id: 389; name: POREC:digest_align_annotate (380); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/7aaf0e3db89c823add474fe956175c] ~> TaskHandler[id: 390; name: POREC:digest_align_annotate (381); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/fa91e78ce13c6d33188ba27d84463f] ~> TaskHandler[id: 391; name: POREC:digest_align_annotate (382); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/55b18176af7b80bc81f8fced447f71] ~> TaskHandler[id: 393; name: POREC:digest_align_annotate (384); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/20f0d424650bb3bf461287f3ceaa76] ~> TaskHandler[id: 392; name: POREC:digest_align_annotate (383); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/6814f9da496162a1cd52a5663e85ad] ~> TaskHandler[id: 394; name: POREC:digest_align_annotate (385); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/b908786c0f2f826f52b8717c1e3ca5] ~> TaskHandler[id: 395; name: POREC:digest_align_annotate (386); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/dc21f53ee3ff50430b2246ae921d99] ~> TaskHandler[id: 396; name: POREC:digest_align_annotate (387); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/531055fd4ebc870c094bbd1fab2058] .. remaining tasks omitted. Aug-17 09:10:08.455 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 386; name: POREC:digest_align_annotate (377); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/c6fd937f51dfb7605c9925ab253a07] Aug-17 09:10:08.456 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (377)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/c6fd937f51dfb7605c9925ab253a07/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:10:08.456 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:10:08.460 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:10:08.461 [Task submitter] INFO nextflow.Session - [28/e603c0] Submitted process > POREC:digest_align_annotate (378) Aug-17 09:11:27.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 387; name: POREC:digest_align_annotate (378); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/e603c0b401eaa93ef1ec941cfdab25] Aug-17 09:11:27.434 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (378)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/e603c0b401eaa93ef1ec941cfdab25/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:11:27.436 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:11:27.440 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:11:27.440 [Task submitter] INFO nextflow.Session - [e5/5a965d] Submitted process > POREC:digest_align_annotate (379) Aug-17 09:12:51.407 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 388; name: POREC:digest_align_annotate (379); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5a965d997946b19d9c63b8a3114381] Aug-17 09:12:51.407 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (379)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5a965d997946b19d9c63b8a3114381/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:12:51.418 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:12:51.419 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:12:51.419 [Task submitter] INFO nextflow.Session - [07/7aaf0e] Submitted process > POREC:digest_align_annotate (380) Aug-17 09:13:36.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 389; name: POREC:digest_align_annotate (380); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/7aaf0e3db89c823add474fe956175c] Aug-17 09:14:16.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 389; name: POREC:digest_align_annotate (380); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/7aaf0e3db89c823add474fe956175c] Aug-17 09:14:16.786 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (380)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/7aaf0e3db89c823add474fe956175c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:14:16.787 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:14:16.812 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:14:16.812 [Task submitter] INFO nextflow.Session - [87/fa91e7] Submitted process > POREC:digest_align_annotate (381) Aug-17 09:14:58.956 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 391; name: POREC:digest_align_annotate (382); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/55b18176af7b80bc81f8fced447f71] ~> TaskHandler[id: 393; name: POREC:digest_align_annotate (384); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/20f0d424650bb3bf461287f3ceaa76] ~> TaskHandler[id: 392; name: POREC:digest_align_annotate (383); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/6814f9da496162a1cd52a5663e85ad] ~> TaskHandler[id: 394; name: POREC:digest_align_annotate (385); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/b908786c0f2f826f52b8717c1e3ca5] ~> TaskHandler[id: 395; name: POREC:digest_align_annotate (386); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/dc21f53ee3ff50430b2246ae921d99] ~> TaskHandler[id: 396; name: POREC:digest_align_annotate (387); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/531055fd4ebc870c094bbd1fab2058] ~> TaskHandler[id: 397; name: POREC:digest_align_annotate (388); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/bed9760f49f3689cc5ddf8e2d10833] ~> TaskHandler[id: 398; name: POREC:digest_align_annotate (389); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/87b1918fd254b2253df8cd05d3fe18] ~> TaskHandler[id: 429; name: POREC:digest_align_annotate (420); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/d990385d44df66acd59f7822839aa0] ~> TaskHandler[id: 399; name: POREC:digest_align_annotate (390); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/3d0816472bc68c02a060191a846b4f] .. remaining tasks omitted. Aug-17 09:15:39.275 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 390; name: POREC:digest_align_annotate (381); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/fa91e78ce13c6d33188ba27d84463f] Aug-17 09:15:39.277 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (381)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/fa91e78ce13c6d33188ba27d84463f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:15:39.279 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:15:39.363 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:15:39.363 [Task submitter] INFO nextflow.Session - [1d/55b181] Submitted process > POREC:digest_align_annotate (382) Aug-17 09:17:04.695 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 391; name: POREC:digest_align_annotate (382); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/55b18176af7b80bc81f8fced447f71] Aug-17 09:17:04.696 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (382)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/55b18176af7b80bc81f8fced447f71/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:17:04.696 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:17:04.701 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:17:04.702 [Task submitter] INFO nextflow.Session - [7d/20f0d4] Submitted process > POREC:digest_align_annotate (384) Aug-17 09:18:27.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 393; name: POREC:digest_align_annotate (384); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/20f0d424650bb3bf461287f3ceaa76] Aug-17 09:18:27.121 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (384)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/20f0d424650bb3bf461287f3ceaa76/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:18:27.122 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:18:27.147 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:18:27.147 [Task submitter] INFO nextflow.Session - [da/6814f9] Submitted process > POREC:digest_align_annotate (383) Aug-17 09:18:36.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 392; name: POREC:digest_align_annotate (383); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/6814f9da496162a1cd52a5663e85ad] Aug-17 09:19:49.321 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 392; name: POREC:digest_align_annotate (383); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/6814f9da496162a1cd52a5663e85ad] Aug-17 09:19:49.322 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (383)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/6814f9da496162a1cd52a5663e85ad/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:19:49.349 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:19:49.356 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:19:49.357 [Task submitter] INFO nextflow.Session - [50/b90878] Submitted process > POREC:digest_align_annotate (385) Aug-17 09:19:59.394 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 395; name: POREC:digest_align_annotate (386); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/dc21f53ee3ff50430b2246ae921d99] ~> TaskHandler[id: 396; name: POREC:digest_align_annotate (387); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/531055fd4ebc870c094bbd1fab2058] ~> TaskHandler[id: 397; name: POREC:digest_align_annotate (388); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/bed9760f49f3689cc5ddf8e2d10833] ~> TaskHandler[id: 398; name: POREC:digest_align_annotate (389); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/87b1918fd254b2253df8cd05d3fe18] ~> TaskHandler[id: 429; name: POREC:digest_align_annotate (420); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/d990385d44df66acd59f7822839aa0] ~> TaskHandler[id: 399; name: POREC:digest_align_annotate (390); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/3d0816472bc68c02a060191a846b4f] ~> TaskHandler[id: 431; name: POREC:digest_align_annotate (422); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/2aae8f35772cc220f26a01cc2b3f1f] ~> TaskHandler[id: 400; name: POREC:digest_align_annotate (391); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2b62f4192cc6832105e89a7987f4c0] ~> TaskHandler[id: 401; name: POREC:digest_align_annotate (392); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c5a5267e3ff65ce74ffa03f71be310] ~> TaskHandler[id: 402; name: POREC:digest_align_annotate (393); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fa24c2e4e3587360d1627182a6112d] .. remaining tasks omitted. Aug-17 09:21:12.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 394; name: POREC:digest_align_annotate (385); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/b908786c0f2f826f52b8717c1e3ca5] Aug-17 09:21:12.870 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (385)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/b908786c0f2f826f52b8717c1e3ca5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:21:12.871 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:21:12.899 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:21:12.899 [Task submitter] INFO nextflow.Session - [0b/dc21f5] Submitted process > POREC:digest_align_annotate (386) Aug-17 09:22:37.096 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 395; name: POREC:digest_align_annotate (386); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/dc21f53ee3ff50430b2246ae921d99] Aug-17 09:22:37.112 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (386)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/dc21f53ee3ff50430b2246ae921d99/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:22:37.113 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:22:37.160 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:22:37.161 [Task submitter] INFO nextflow.Session - [3d/531055] Submitted process > POREC:digest_align_annotate (387) Aug-17 09:23:36.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 396; name: POREC:digest_align_annotate (387); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/531055fd4ebc870c094bbd1fab2058] Aug-17 09:24:03.382 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 396; name: POREC:digest_align_annotate (387); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/531055fd4ebc870c094bbd1fab2058] Aug-17 09:24:03.383 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (387)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/531055fd4ebc870c094bbd1fab2058/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:24:03.384 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:24:03.425 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:24:03.426 [Task submitter] INFO nextflow.Session - [b9/bed976] Submitted process > POREC:digest_align_annotate (388) Aug-17 09:24:59.610 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 398; name: POREC:digest_align_annotate (389); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/87b1918fd254b2253df8cd05d3fe18] ~> TaskHandler[id: 429; name: POREC:digest_align_annotate (420); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/d990385d44df66acd59f7822839aa0] ~> TaskHandler[id: 399; name: POREC:digest_align_annotate (390); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/3d0816472bc68c02a060191a846b4f] ~> TaskHandler[id: 431; name: POREC:digest_align_annotate (422); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/2aae8f35772cc220f26a01cc2b3f1f] ~> TaskHandler[id: 400; name: POREC:digest_align_annotate (391); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2b62f4192cc6832105e89a7987f4c0] ~> TaskHandler[id: 401; name: POREC:digest_align_annotate (392); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c5a5267e3ff65ce74ffa03f71be310] ~> TaskHandler[id: 402; name: POREC:digest_align_annotate (393); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fa24c2e4e3587360d1627182a6112d] ~> TaskHandler[id: 403; name: POREC:digest_align_annotate (394); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/257e7e49b1f8398ee6700969e1a022] ~> TaskHandler[id: 404; name: POREC:digest_align_annotate (395); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9c5e0918dc7090765cc56598a6ce39] ~> TaskHandler[id: 405; name: POREC:digest_align_annotate (396); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/17b04d9dc0084208abedbe4b5f2597] .. remaining tasks omitted. Aug-17 09:25:26.504 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 397; name: POREC:digest_align_annotate (388); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/bed9760f49f3689cc5ddf8e2d10833] Aug-17 09:25:26.505 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (388)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/bed9760f49f3689cc5ddf8e2d10833/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:25:26.506 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:25:26.520 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:25:26.520 [Task submitter] INFO nextflow.Session - [e5/87b191] Submitted process > POREC:digest_align_annotate (389) Aug-17 09:27:03.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 398; name: POREC:digest_align_annotate (389); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/87b1918fd254b2253df8cd05d3fe18] Aug-17 09:27:03.305 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (389)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/87b1918fd254b2253df8cd05d3fe18/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:27:03.306 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:27:03.323 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:27:03.323 [Task submitter] INFO nextflow.Session - [ec/d99038] Submitted process > POREC:digest_align_annotate (420) Aug-17 09:28:36.615 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 429; name: POREC:digest_align_annotate (420); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/d990385d44df66acd59f7822839aa0] Aug-17 09:28:50.761 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 429; name: POREC:digest_align_annotate (420); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/d990385d44df66acd59f7822839aa0] Aug-17 09:28:50.761 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (420)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/d990385d44df66acd59f7822839aa0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:28:50.762 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:28:50.767 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:28:50.767 [Task submitter] INFO nextflow.Session - [09/3d0816] Submitted process > POREC:digest_align_annotate (390) Aug-17 09:29:59.983 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 431; name: POREC:digest_align_annotate (422); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/2aae8f35772cc220f26a01cc2b3f1f] ~> TaskHandler[id: 400; name: POREC:digest_align_annotate (391); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2b62f4192cc6832105e89a7987f4c0] ~> TaskHandler[id: 401; name: POREC:digest_align_annotate (392); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c5a5267e3ff65ce74ffa03f71be310] ~> TaskHandler[id: 402; name: POREC:digest_align_annotate (393); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fa24c2e4e3587360d1627182a6112d] ~> TaskHandler[id: 403; name: POREC:digest_align_annotate (394); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/257e7e49b1f8398ee6700969e1a022] ~> TaskHandler[id: 404; name: POREC:digest_align_annotate (395); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9c5e0918dc7090765cc56598a6ce39] ~> TaskHandler[id: 405; name: POREC:digest_align_annotate (396); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/17b04d9dc0084208abedbe4b5f2597] ~> TaskHandler[id: 406; name: POREC:digest_align_annotate (397); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/18cedd4a8756138dd35f015a81aa48] ~> TaskHandler[id: 409; name: POREC:digest_align_annotate (400); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1e634908913d09e002071d2be36af0] ~> TaskHandler[id: 407; name: POREC:digest_align_annotate (398); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0f7b981ccedca43ed00c015c3f3546] .. remaining tasks omitted. Aug-17 09:30:37.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 399; name: POREC:digest_align_annotate (390); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/3d0816472bc68c02a060191a846b4f] Aug-17 09:30:37.910 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (390)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/3d0816472bc68c02a060191a846b4f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:30:37.911 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:30:37.945 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:30:37.945 [Task submitter] INFO nextflow.Session - [b9/2aae8f] Submitted process > POREC:digest_align_annotate (422) Aug-17 09:32:14.885 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 431; name: POREC:digest_align_annotate (422); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/2aae8f35772cc220f26a01cc2b3f1f] Aug-17 09:32:14.886 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (422)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/2aae8f35772cc220f26a01cc2b3f1f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:32:14.887 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:32:14.908 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:32:14.908 [Task submitter] INFO nextflow.Session - [5b/2b62f4] Submitted process > POREC:digest_align_annotate (391) Aug-17 09:33:36.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 400; name: POREC:digest_align_annotate (391); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2b62f4192cc6832105e89a7987f4c0] Aug-17 09:34:11.150 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 400; name: POREC:digest_align_annotate (391); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2b62f4192cc6832105e89a7987f4c0] Aug-17 09:34:11.151 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (391)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2b62f4192cc6832105e89a7987f4c0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:34:11.152 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:34:11.177 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:34:11.177 [Task submitter] INFO nextflow.Session - [c9/c5a526] Submitted process > POREC:digest_align_annotate (392) Aug-17 09:35:00.345 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 402; name: POREC:digest_align_annotate (393); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fa24c2e4e3587360d1627182a6112d] ~> TaskHandler[id: 403; name: POREC:digest_align_annotate (394); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/257e7e49b1f8398ee6700969e1a022] ~> TaskHandler[id: 404; name: POREC:digest_align_annotate (395); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9c5e0918dc7090765cc56598a6ce39] ~> TaskHandler[id: 405; name: POREC:digest_align_annotate (396); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/17b04d9dc0084208abedbe4b5f2597] ~> TaskHandler[id: 406; name: POREC:digest_align_annotate (397); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/18cedd4a8756138dd35f015a81aa48] ~> TaskHandler[id: 409; name: POREC:digest_align_annotate (400); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1e634908913d09e002071d2be36af0] ~> TaskHandler[id: 407; name: POREC:digest_align_annotate (398); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0f7b981ccedca43ed00c015c3f3546] ~> TaskHandler[id: 410; name: POREC:digest_align_annotate (401); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/502cf1d8b2cfa429b4e6d6d874ea04] ~> TaskHandler[id: 412; name: POREC:digest_align_annotate (403); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fafad83b25e35a7c67ce45d9c0c999] ~> TaskHandler[id: 411; name: POREC:digest_align_annotate (402); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/0c27e5edc20fe17e1fac486840c326] .. remaining tasks omitted. Aug-17 09:35:51.954 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 401; name: POREC:digest_align_annotate (392); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c5a5267e3ff65ce74ffa03f71be310] Aug-17 09:35:51.955 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (392)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c5a5267e3ff65ce74ffa03f71be310/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:35:51.962 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:35:51.962 [Task submitter] INFO nextflow.Session - [22/fa24c2] Submitted process > POREC:digest_align_annotate (393) Aug-17 09:35:51.963 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:37:29.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 402; name: POREC:digest_align_annotate (393); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fa24c2e4e3587360d1627182a6112d] Aug-17 09:37:29.536 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (393)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fa24c2e4e3587360d1627182a6112d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:37:29.537 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:37:29.548 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:37:29.548 [Task submitter] INFO nextflow.Session - [30/257e7e] Submitted process > POREC:digest_align_annotate (394) Aug-17 09:38:36.721 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 403; name: POREC:digest_align_annotate (394); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/257e7e49b1f8398ee6700969e1a022] Aug-17 09:39:25.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 403; name: POREC:digest_align_annotate (394); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/257e7e49b1f8398ee6700969e1a022] Aug-17 09:39:25.479 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (394)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/257e7e49b1f8398ee6700969e1a022/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:39:25.480 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:39:25.486 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:39:25.486 [Task submitter] INFO nextflow.Session - [27/9c5e09] Submitted process > POREC:digest_align_annotate (395) Aug-17 09:40:00.616 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 405; name: POREC:digest_align_annotate (396); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/17b04d9dc0084208abedbe4b5f2597] ~> TaskHandler[id: 406; name: POREC:digest_align_annotate (397); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/18cedd4a8756138dd35f015a81aa48] ~> TaskHandler[id: 409; name: POREC:digest_align_annotate (400); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1e634908913d09e002071d2be36af0] ~> TaskHandler[id: 407; name: POREC:digest_align_annotate (398); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0f7b981ccedca43ed00c015c3f3546] ~> TaskHandler[id: 410; name: POREC:digest_align_annotate (401); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/502cf1d8b2cfa429b4e6d6d874ea04] ~> TaskHandler[id: 412; name: POREC:digest_align_annotate (403); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fafad83b25e35a7c67ce45d9c0c999] ~> TaskHandler[id: 411; name: POREC:digest_align_annotate (402); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/0c27e5edc20fe17e1fac486840c326] ~> TaskHandler[id: 413; name: POREC:digest_align_annotate (404); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4862969ad3c45fc95713707069e0a3] ~> TaskHandler[id: 414; name: POREC:digest_align_annotate (405); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/918cc67a6a5b8f0d7e51381d54bd29] ~> TaskHandler[id: 415; name: POREC:digest_align_annotate (406); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/38022ccb224a36795db582954b3977] .. remaining tasks omitted. Aug-17 09:41:11.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 404; name: POREC:digest_align_annotate (395); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9c5e0918dc7090765cc56598a6ce39] Aug-17 09:41:11.401 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (395)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/9c5e0918dc7090765cc56598a6ce39/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:41:11.402 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:41:11.407 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:41:11.408 [Task submitter] INFO nextflow.Session - [77/17b04d] Submitted process > POREC:digest_align_annotate (396) Aug-17 09:42:51.077 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 405; name: POREC:digest_align_annotate (396); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/17b04d9dc0084208abedbe4b5f2597] Aug-17 09:42:51.078 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (396)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/17b04d9dc0084208abedbe4b5f2597/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:42:51.079 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:42:51.099 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:42:51.099 [Task submitter] INFO nextflow.Session - [6d/18cedd] Submitted process > POREC:digest_align_annotate (397) Aug-17 09:43:36.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 406; name: POREC:digest_align_annotate (397); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/18cedd4a8756138dd35f015a81aa48] Aug-17 09:44:33.759 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 406; name: POREC:digest_align_annotate (397); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/18cedd4a8756138dd35f015a81aa48] Aug-17 09:44:33.759 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (397)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/18cedd4a8756138dd35f015a81aa48/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:44:33.766 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:44:33.773 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:44:33.773 [Task submitter] INFO nextflow.Session - [d4/1e6349] Submitted process > POREC:digest_align_annotate (400) Aug-17 09:45:00.865 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 407; name: POREC:digest_align_annotate (398); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0f7b981ccedca43ed00c015c3f3546] ~> TaskHandler[id: 410; name: POREC:digest_align_annotate (401); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/502cf1d8b2cfa429b4e6d6d874ea04] ~> TaskHandler[id: 412; name: POREC:digest_align_annotate (403); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fafad83b25e35a7c67ce45d9c0c999] ~> TaskHandler[id: 411; name: POREC:digest_align_annotate (402); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/0c27e5edc20fe17e1fac486840c326] ~> TaskHandler[id: 413; name: POREC:digest_align_annotate (404); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4862969ad3c45fc95713707069e0a3] ~> TaskHandler[id: 414; name: POREC:digest_align_annotate (405); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/918cc67a6a5b8f0d7e51381d54bd29] ~> TaskHandler[id: 415; name: POREC:digest_align_annotate (406); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/38022ccb224a36795db582954b3977] ~> TaskHandler[id: 417; name: POREC:digest_align_annotate (408); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/3ddc0cd867ec8bee62a3b7242a542b] ~> TaskHandler[id: 416; name: POREC:digest_align_annotate (407); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/4bd46e981fe369c07a9c6e967dc9a8] ~> TaskHandler[id: 418; name: POREC:digest_align_annotate (409); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/c7ce14824ada1349f6d523bc6a1cf6] .. remaining tasks omitted. Aug-17 09:46:15.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 409; name: POREC:digest_align_annotate (400); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1e634908913d09e002071d2be36af0] Aug-17 09:46:15.345 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (400)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1e634908913d09e002071d2be36af0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:46:15.345 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:46:15.359 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:46:15.359 [Task submitter] INFO nextflow.Session - [bd/0f7b98] Submitted process > POREC:digest_align_annotate (398) Aug-17 09:47:48.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 407; name: POREC:digest_align_annotate (398); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0f7b981ccedca43ed00c015c3f3546] Aug-17 09:47:48.583 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (398)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0f7b981ccedca43ed00c015c3f3546/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:47:48.584 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:47:48.611 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:47:48.611 [Task submitter] INFO nextflow.Session - [2b/502cf1] Submitted process > POREC:digest_align_annotate (401) Aug-17 09:48:36.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 410; name: POREC:digest_align_annotate (401); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/502cf1d8b2cfa429b4e6d6d874ea04] Aug-17 09:49:28.079 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 410; name: POREC:digest_align_annotate (401); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/502cf1d8b2cfa429b4e6d6d874ea04] Aug-17 09:49:28.080 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (401)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/502cf1d8b2cfa429b4e6d6d874ea04/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:49:28.081 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:49:28.086 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:49:28.087 [Task submitter] INFO nextflow.Session - [22/fafad8] Submitted process > POREC:digest_align_annotate (403) Aug-17 09:50:01.197 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 411; name: POREC:digest_align_annotate (402); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/0c27e5edc20fe17e1fac486840c326] ~> TaskHandler[id: 413; name: POREC:digest_align_annotate (404); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4862969ad3c45fc95713707069e0a3] ~> TaskHandler[id: 414; name: POREC:digest_align_annotate (405); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/918cc67a6a5b8f0d7e51381d54bd29] ~> TaskHandler[id: 415; name: POREC:digest_align_annotate (406); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/38022ccb224a36795db582954b3977] ~> TaskHandler[id: 417; name: POREC:digest_align_annotate (408); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/3ddc0cd867ec8bee62a3b7242a542b] ~> TaskHandler[id: 416; name: POREC:digest_align_annotate (407); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/4bd46e981fe369c07a9c6e967dc9a8] ~> TaskHandler[id: 418; name: POREC:digest_align_annotate (409); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/c7ce14824ada1349f6d523bc6a1cf6] ~> TaskHandler[id: 419; name: POREC:digest_align_annotate (410); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/303b599fbdafcada32dd8b16e9d572] ~> TaskHandler[id: 421; name: POREC:digest_align_annotate (412); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/2fae2c655aeef3cccf7d950614fe6c] ~> TaskHandler[id: 422; name: POREC:digest_align_annotate (413); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/502ff2764225d715d0324dec596661] .. remaining tasks omitted. Aug-17 09:51:09.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 412; name: POREC:digest_align_annotate (403); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fafad83b25e35a7c67ce45d9c0c999] Aug-17 09:51:09.401 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (403)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fafad83b25e35a7c67ce45d9c0c999/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:51:09.401 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:51:09.416 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:51:09.416 [Task submitter] INFO nextflow.Session - [d0/0c27e5] Submitted process > POREC:digest_align_annotate (402) Aug-17 09:53:00.862 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 411; name: POREC:digest_align_annotate (402); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/0c27e5edc20fe17e1fac486840c326] Aug-17 09:53:00.863 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (402)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/0c27e5edc20fe17e1fac486840c326/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:53:00.864 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:53:00.888 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:53:00.889 [Task submitter] INFO nextflow.Session - [90/486296] Submitted process > POREC:digest_align_annotate (404) Aug-17 09:53:36.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 413; name: POREC:digest_align_annotate (404); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4862969ad3c45fc95713707069e0a3] Aug-17 09:54:44.955 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 413; name: POREC:digest_align_annotate (404); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4862969ad3c45fc95713707069e0a3] Aug-17 09:54:44.956 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (404)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4862969ad3c45fc95713707069e0a3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:54:44.957 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:54:44.963 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:54:44.963 [Task submitter] INFO nextflow.Session - [bb/918cc6] Submitted process > POREC:digest_align_annotate (405) Aug-17 09:55:02.023 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 415; name: POREC:digest_align_annotate (406); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/38022ccb224a36795db582954b3977] ~> TaskHandler[id: 417; name: POREC:digest_align_annotate (408); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/3ddc0cd867ec8bee62a3b7242a542b] ~> TaskHandler[id: 416; name: POREC:digest_align_annotate (407); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/4bd46e981fe369c07a9c6e967dc9a8] ~> TaskHandler[id: 418; name: POREC:digest_align_annotate (409); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/c7ce14824ada1349f6d523bc6a1cf6] ~> TaskHandler[id: 419; name: POREC:digest_align_annotate (410); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/303b599fbdafcada32dd8b16e9d572] ~> TaskHandler[id: 421; name: POREC:digest_align_annotate (412); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/2fae2c655aeef3cccf7d950614fe6c] ~> TaskHandler[id: 422; name: POREC:digest_align_annotate (413); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/502ff2764225d715d0324dec596661] ~> TaskHandler[id: 424; name: POREC:digest_align_annotate (415); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/8b481217aab2365183ad65496627ee] ~> TaskHandler[id: 420; name: POREC:digest_align_annotate (411); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/c219b93946a5b7ab6c57fc02730d25] ~> TaskHandler[id: 423; name: POREC:digest_align_annotate (414); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/e1601622ad7d48dc3ad5bffcf6151f] .. remaining tasks omitted. Aug-17 09:56:16.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 414; name: POREC:digest_align_annotate (405); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/918cc67a6a5b8f0d7e51381d54bd29] Aug-17 09:56:16.239 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (405)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/918cc67a6a5b8f0d7e51381d54bd29/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:56:16.240 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:56:16.275 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:56:16.276 [Task submitter] INFO nextflow.Session - [29/100684] Submitted process > POREC:to_pairs_file (5) Aug-17 09:57:44.953 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 916; name: POREC:to_pairs_file (5); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/1006841705d7e2847b8571f29db8be] Aug-17 09:57:44.968 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:57:44.968 [Task submitter] INFO nextflow.Session - [ee/38022c] Submitted process > POREC:digest_align_annotate (406) Aug-17 09:58:36.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 415; name: POREC:digest_align_annotate (406); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/38022ccb224a36795db582954b3977] Aug-17 09:59:28.436 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 415; name: POREC:digest_align_annotate (406); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/38022ccb224a36795db582954b3977] Aug-17 09:59:28.458 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (406)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/38022ccb224a36795db582954b3977/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 09:59:28.458 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 09:59:28.476 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 09:59:28.476 [Task submitter] INFO nextflow.Session - [54/3ddc0c] Submitted process > POREC:digest_align_annotate (408) Aug-17 10:00:02.592 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 416; name: POREC:digest_align_annotate (407); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/4bd46e981fe369c07a9c6e967dc9a8] ~> TaskHandler[id: 418; name: POREC:digest_align_annotate (409); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/c7ce14824ada1349f6d523bc6a1cf6] ~> TaskHandler[id: 419; name: POREC:digest_align_annotate (410); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/303b599fbdafcada32dd8b16e9d572] ~> TaskHandler[id: 421; name: POREC:digest_align_annotate (412); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/2fae2c655aeef3cccf7d950614fe6c] ~> TaskHandler[id: 422; name: POREC:digest_align_annotate (413); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/502ff2764225d715d0324dec596661] ~> TaskHandler[id: 424; name: POREC:digest_align_annotate (415); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/8b481217aab2365183ad65496627ee] ~> TaskHandler[id: 420; name: POREC:digest_align_annotate (411); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/c219b93946a5b7ab6c57fc02730d25] ~> TaskHandler[id: 423; name: POREC:digest_align_annotate (414); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/e1601622ad7d48dc3ad5bffcf6151f] ~> TaskHandler[id: 425; name: POREC:digest_align_annotate (416); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/c6a006dc46bc66ff1b1dbc3816ee9d] ~> TaskHandler[id: 426; name: POREC:digest_align_annotate (417); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/706b57bbbc5e6978e9fafdc8269cfb] .. remaining tasks omitted. Aug-17 10:01:15.019 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 417; name: POREC:digest_align_annotate (408); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/3ddc0cd867ec8bee62a3b7242a542b] Aug-17 10:01:15.020 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (408)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/3ddc0cd867ec8bee62a3b7242a542b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:01:15.020 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:01:15.042 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:01:15.065 [Task submitter] INFO nextflow.Session - [c0/4bd46e] Submitted process > POREC:digest_align_annotate (407) Aug-17 10:02:57.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 416; name: POREC:digest_align_annotate (407); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/4bd46e981fe369c07a9c6e967dc9a8] Aug-17 10:02:57.735 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (407)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/4bd46e981fe369c07a9c6e967dc9a8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:02:57.735 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:02:57.743 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:02:57.743 [Task submitter] INFO nextflow.Session - [f9/c7ce14] Submitted process > POREC:digest_align_annotate (409) Aug-17 10:03:36.985 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 418; name: POREC:digest_align_annotate (409); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/c7ce14824ada1349f6d523bc6a1cf6] Aug-17 10:04:38.278 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 418; name: POREC:digest_align_annotate (409); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/c7ce14824ada1349f6d523bc6a1cf6] Aug-17 10:04:38.278 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (409)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/c7ce14824ada1349f6d523bc6a1cf6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:04:38.279 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:04:38.284 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:04:38.284 [Task submitter] INFO nextflow.Session - [58/303b59] Submitted process > POREC:digest_align_annotate (410) Aug-17 10:05:03.369 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 421; name: POREC:digest_align_annotate (412); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/2fae2c655aeef3cccf7d950614fe6c] ~> TaskHandler[id: 422; name: POREC:digest_align_annotate (413); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/502ff2764225d715d0324dec596661] ~> TaskHandler[id: 424; name: POREC:digest_align_annotate (415); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/8b481217aab2365183ad65496627ee] ~> TaskHandler[id: 420; name: POREC:digest_align_annotate (411); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/c219b93946a5b7ab6c57fc02730d25] ~> TaskHandler[id: 423; name: POREC:digest_align_annotate (414); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/e1601622ad7d48dc3ad5bffcf6151f] ~> TaskHandler[id: 425; name: POREC:digest_align_annotate (416); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/c6a006dc46bc66ff1b1dbc3816ee9d] ~> TaskHandler[id: 426; name: POREC:digest_align_annotate (417); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/706b57bbbc5e6978e9fafdc8269cfb] ~> TaskHandler[id: 427; name: POREC:digest_align_annotate (418); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/ae8e3298b79411e00aa4b630a5af88] ~> TaskHandler[id: 428; name: POREC:digest_align_annotate (419); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/f8370692c4f2579b4c7a7369f6ca57] ~> TaskHandler[id: 430; name: POREC:digest_align_annotate (421); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/cd407300728ca254fcea091d40fc8a] .. remaining tasks omitted. Aug-17 10:06:14.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 419; name: POREC:digest_align_annotate (410); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/303b599fbdafcada32dd8b16e9d572] Aug-17 10:06:14.159 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (410)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/303b599fbdafcada32dd8b16e9d572/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:06:14.159 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:06:14.172 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:06:14.172 [Task submitter] INFO nextflow.Session - [27/2fae2c] Submitted process > POREC:digest_align_annotate (412) Aug-17 10:07:55.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 421; name: POREC:digest_align_annotate (412); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/2fae2c655aeef3cccf7d950614fe6c] Aug-17 10:07:55.606 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (412)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/2fae2c655aeef3cccf7d950614fe6c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:07:55.607 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:07:55.622 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:07:55.622 [Task submitter] INFO nextflow.Session - [08/502ff2] Submitted process > POREC:digest_align_annotate (413) Aug-17 10:08:37.053 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 422; name: POREC:digest_align_annotate (413); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/502ff2764225d715d0324dec596661] Aug-17 10:09:28.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 422; name: POREC:digest_align_annotate (413); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/502ff2764225d715d0324dec596661] Aug-17 10:09:28.537 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (413)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/502ff2764225d715d0324dec596661/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:09:28.538 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:09:28.564 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:09:28.573 [Task submitter] INFO nextflow.Session - [32/8b4812] Submitted process > POREC:digest_align_annotate (415) Aug-17 10:10:03.692 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 420; name: POREC:digest_align_annotate (411); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/c219b93946a5b7ab6c57fc02730d25] ~> TaskHandler[id: 423; name: POREC:digest_align_annotate (414); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/e1601622ad7d48dc3ad5bffcf6151f] ~> TaskHandler[id: 425; name: POREC:digest_align_annotate (416); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/c6a006dc46bc66ff1b1dbc3816ee9d] ~> TaskHandler[id: 426; name: POREC:digest_align_annotate (417); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/706b57bbbc5e6978e9fafdc8269cfb] ~> TaskHandler[id: 427; name: POREC:digest_align_annotate (418); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/ae8e3298b79411e00aa4b630a5af88] ~> TaskHandler[id: 428; name: POREC:digest_align_annotate (419); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/f8370692c4f2579b4c7a7369f6ca57] ~> TaskHandler[id: 430; name: POREC:digest_align_annotate (421); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/cd407300728ca254fcea091d40fc8a] ~> TaskHandler[id: 432; name: POREC:digest_align_annotate (423); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/ebf48ff8feb60e361cb6dd11cb1ef1] ~> TaskHandler[id: 433; name: POREC:digest_align_annotate (424); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/0f40399a14a3a91f20630163cd2804] ~> TaskHandler[id: 434; name: POREC:digest_align_annotate (425); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/30cfa481353de47ff17787a39c4022] .. remaining tasks omitted. Aug-17 10:11:05.860 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 424; name: POREC:digest_align_annotate (415); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/8b481217aab2365183ad65496627ee] Aug-17 10:11:05.861 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (415)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/8b481217aab2365183ad65496627ee/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:11:05.861 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:11:05.890 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:11:05.890 [Task submitter] INFO nextflow.Session - [da/3e903a] Submitted process > POREC:digest_align_annotate (499) Aug-17 10:13:00.933 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 508; name: POREC:digest_align_annotate (499); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/3e903ad7f2d710b6d84a758f3be68a] Aug-17 10:13:00.933 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (499)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/3e903ad7f2d710b6d84a758f3be68a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:13:00.939 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:13:00.971 [Task submitter] INFO nextflow.Session - [ef/c219b9] Submitted process > POREC:digest_align_annotate (411) Aug-17 10:13:00.972 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:13:37.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 420; name: POREC:digest_align_annotate (411); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/c219b93946a5b7ab6c57fc02730d25] Aug-17 10:14:58.260 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 420; name: POREC:digest_align_annotate (411); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/c219b93946a5b7ab6c57fc02730d25] Aug-17 10:14:58.260 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (411)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/c219b93946a5b7ab6c57fc02730d25/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:14:58.261 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:14:58.266 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:14:58.266 [Task submitter] INFO nextflow.Session - [02/e16016] Submitted process > POREC:digest_align_annotate (414) Aug-17 10:15:04.291 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 425; name: POREC:digest_align_annotate (416); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/c6a006dc46bc66ff1b1dbc3816ee9d] ~> TaskHandler[id: 426; name: POREC:digest_align_annotate (417); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/706b57bbbc5e6978e9fafdc8269cfb] ~> TaskHandler[id: 427; name: POREC:digest_align_annotate (418); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/ae8e3298b79411e00aa4b630a5af88] ~> TaskHandler[id: 428; name: POREC:digest_align_annotate (419); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/f8370692c4f2579b4c7a7369f6ca57] ~> TaskHandler[id: 430; name: POREC:digest_align_annotate (421); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/cd407300728ca254fcea091d40fc8a] ~> TaskHandler[id: 432; name: POREC:digest_align_annotate (423); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/ebf48ff8feb60e361cb6dd11cb1ef1] ~> TaskHandler[id: 433; name: POREC:digest_align_annotate (424); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/0f40399a14a3a91f20630163cd2804] ~> TaskHandler[id: 434; name: POREC:digest_align_annotate (425); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/30cfa481353de47ff17787a39c4022] ~> TaskHandler[id: 435; name: POREC:digest_align_annotate (426); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/949443d59a31f562feaf0f42f97aa4] ~> TaskHandler[id: 437; name: POREC:digest_align_annotate (428); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/3cf63f3b01f8a41d2f55627277be80] .. remaining tasks omitted. Aug-17 10:16:40.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 423; name: POREC:digest_align_annotate (414); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/e1601622ad7d48dc3ad5bffcf6151f] Aug-17 10:16:40.327 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (414)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/e1601622ad7d48dc3ad5bffcf6151f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:16:40.328 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:16:40.348 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:16:40.349 [Task submitter] INFO nextflow.Session - [68/c6a006] Submitted process > POREC:digest_align_annotate (416) Aug-17 10:18:32.149 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 425; name: POREC:digest_align_annotate (416); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/c6a006dc46bc66ff1b1dbc3816ee9d] Aug-17 10:18:32.150 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (416)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/c6a006dc46bc66ff1b1dbc3816ee9d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:18:32.151 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:18:32.157 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:18:32.157 [Task submitter] INFO nextflow.Session - [a2/706b57] Submitted process > POREC:digest_align_annotate (417) Aug-17 10:18:37.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 426; name: POREC:digest_align_annotate (417); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/706b57bbbc5e6978e9fafdc8269cfb] Aug-17 10:20:04.437 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 427; name: POREC:digest_align_annotate (418); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/ae8e3298b79411e00aa4b630a5af88] ~> TaskHandler[id: 428; name: POREC:digest_align_annotate (419); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/f8370692c4f2579b4c7a7369f6ca57] ~> TaskHandler[id: 430; name: POREC:digest_align_annotate (421); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/cd407300728ca254fcea091d40fc8a] ~> TaskHandler[id: 432; name: POREC:digest_align_annotate (423); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/ebf48ff8feb60e361cb6dd11cb1ef1] ~> TaskHandler[id: 433; name: POREC:digest_align_annotate (424); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/0f40399a14a3a91f20630163cd2804] ~> TaskHandler[id: 434; name: POREC:digest_align_annotate (425); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/30cfa481353de47ff17787a39c4022] ~> TaskHandler[id: 435; name: POREC:digest_align_annotate (426); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/949443d59a31f562feaf0f42f97aa4] ~> TaskHandler[id: 437; name: POREC:digest_align_annotate (428); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/3cf63f3b01f8a41d2f55627277be80] ~> TaskHandler[id: 436; name: POREC:digest_align_annotate (427); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/05424885f52ec0623d65884f949f94] ~> TaskHandler[id: 438; name: POREC:digest_align_annotate (429); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/1707ba73e2d9b12b0890fcee2d7d10] .. remaining tasks omitted. Aug-17 10:20:20.701 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 426; name: POREC:digest_align_annotate (417); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/706b57bbbc5e6978e9fafdc8269cfb] Aug-17 10:20:20.701 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (417)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/706b57bbbc5e6978e9fafdc8269cfb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:20:20.702 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:20:20.723 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:20:20.723 [Task submitter] INFO nextflow.Session - [09/ae8e32] Submitted process > POREC:digest_align_annotate (418) Aug-17 10:22:06.089 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 427; name: POREC:digest_align_annotate (418); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/ae8e3298b79411e00aa4b630a5af88] Aug-17 10:22:06.090 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (418)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/ae8e3298b79411e00aa4b630a5af88/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:22:06.091 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:22:06.125 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:22:06.125 [Task submitter] INFO nextflow.Session - [24/f83706] Submitted process > POREC:digest_align_annotate (419) Aug-17 10:23:37.210 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 428; name: POREC:digest_align_annotate (419); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/f8370692c4f2579b4c7a7369f6ca57] Aug-17 10:23:45.385 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 428; name: POREC:digest_align_annotate (419); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/f8370692c4f2579b4c7a7369f6ca57] Aug-17 10:23:45.385 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (419)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/f8370692c4f2579b4c7a7369f6ca57/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:23:45.386 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:23:45.417 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:23:45.417 [Task submitter] INFO nextflow.Session - [3b/cd4073] Submitted process > POREC:digest_align_annotate (421) Aug-17 10:25:04.666 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 432; name: POREC:digest_align_annotate (423); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/ebf48ff8feb60e361cb6dd11cb1ef1] ~> TaskHandler[id: 433; name: POREC:digest_align_annotate (424); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/0f40399a14a3a91f20630163cd2804] ~> TaskHandler[id: 434; name: POREC:digest_align_annotate (425); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/30cfa481353de47ff17787a39c4022] ~> TaskHandler[id: 435; name: POREC:digest_align_annotate (426); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/949443d59a31f562feaf0f42f97aa4] ~> TaskHandler[id: 437; name: POREC:digest_align_annotate (428); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/3cf63f3b01f8a41d2f55627277be80] ~> TaskHandler[id: 436; name: POREC:digest_align_annotate (427); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/05424885f52ec0623d65884f949f94] ~> TaskHandler[id: 438; name: POREC:digest_align_annotate (429); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/1707ba73e2d9b12b0890fcee2d7d10] ~> TaskHandler[id: 439; name: POREC:digest_align_annotate (430); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d8a8d71b085782708158ac649a51e9] ~> TaskHandler[id: 440; name: POREC:digest_align_annotate (431); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/4224b77c0d7f9707af0aa2fe845e49] ~> TaskHandler[id: 442; name: POREC:digest_align_annotate (433); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/fb1686347be40d40d7ca41bdddea20] .. remaining tasks omitted. Aug-17 10:25:30.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 430; name: POREC:digest_align_annotate (421); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/cd407300728ca254fcea091d40fc8a] Aug-17 10:25:30.931 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (421)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/cd407300728ca254fcea091d40fc8a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:25:30.932 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:25:30.950 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:25:30.950 [Task submitter] INFO nextflow.Session - [87/ebf48f] Submitted process > POREC:digest_align_annotate (423) Aug-17 10:27:17.370 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 432; name: POREC:digest_align_annotate (423); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/ebf48ff8feb60e361cb6dd11cb1ef1] Aug-17 10:27:17.371 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (423)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/ebf48ff8feb60e361cb6dd11cb1ef1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:27:17.372 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:27:17.392 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:27:17.392 [Task submitter] INFO nextflow.Session - [7b/0f4039] Submitted process > POREC:digest_align_annotate (424) Aug-17 10:28:37.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 433; name: POREC:digest_align_annotate (424); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/0f40399a14a3a91f20630163cd2804] Aug-17 10:28:57.495 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 433; name: POREC:digest_align_annotate (424); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/0f40399a14a3a91f20630163cd2804] Aug-17 10:28:57.495 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (424)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/0f40399a14a3a91f20630163cd2804/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:28:57.496 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:28:57.527 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:28:57.528 [Task submitter] INFO nextflow.Session - [6b/30cfa4] Submitted process > POREC:digest_align_annotate (425) Aug-17 10:30:04.723 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 435; name: POREC:digest_align_annotate (426); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/949443d59a31f562feaf0f42f97aa4] ~> TaskHandler[id: 437; name: POREC:digest_align_annotate (428); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/3cf63f3b01f8a41d2f55627277be80] ~> TaskHandler[id: 436; name: POREC:digest_align_annotate (427); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/05424885f52ec0623d65884f949f94] ~> TaskHandler[id: 438; name: POREC:digest_align_annotate (429); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/1707ba73e2d9b12b0890fcee2d7d10] ~> TaskHandler[id: 439; name: POREC:digest_align_annotate (430); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d8a8d71b085782708158ac649a51e9] ~> TaskHandler[id: 440; name: POREC:digest_align_annotate (431); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/4224b77c0d7f9707af0aa2fe845e49] ~> TaskHandler[id: 442; name: POREC:digest_align_annotate (433); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/fb1686347be40d40d7ca41bdddea20] ~> TaskHandler[id: 441; name: POREC:digest_align_annotate (432); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1e897d954f1a20c5301e888c86405f] ~> TaskHandler[id: 443; name: POREC:digest_align_annotate (434); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/d50e6688788a4155d13db88b48759b] ~> TaskHandler[id: 444; name: POREC:digest_align_annotate (435); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/46ef50992bc930ade30b4610e601b1] .. remaining tasks omitted. Aug-17 10:30:33.666 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 434; name: POREC:digest_align_annotate (425); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/30cfa481353de47ff17787a39c4022] Aug-17 10:30:33.730 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (425)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/30cfa481353de47ff17787a39c4022/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:30:33.731 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:30:33.769 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:30:33.770 [Task submitter] INFO nextflow.Session - [8a/949443] Submitted process > POREC:digest_align_annotate (426) Aug-17 10:32:11.083 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 435; name: POREC:digest_align_annotate (426); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/949443d59a31f562feaf0f42f97aa4] Aug-17 10:32:11.083 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (426)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/949443d59a31f562feaf0f42f97aa4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:32:11.084 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:32:11.090 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:32:11.090 [Task submitter] INFO nextflow.Session - [af/3cf63f] Submitted process > POREC:digest_align_annotate (428) Aug-17 10:33:37.281 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 437; name: POREC:digest_align_annotate (428); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/3cf63f3b01f8a41d2f55627277be80] Aug-17 10:33:47.145 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 437; name: POREC:digest_align_annotate (428); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/3cf63f3b01f8a41d2f55627277be80] Aug-17 10:33:47.146 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (428)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/3cf63f3b01f8a41d2f55627277be80/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:33:47.146 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:33:47.173 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:33:47.173 [Task submitter] INFO nextflow.Session - [2a/054248] Submitted process > POREC:digest_align_annotate (427) Aug-17 10:35:05.395 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 438; name: POREC:digest_align_annotate (429); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/1707ba73e2d9b12b0890fcee2d7d10] ~> TaskHandler[id: 439; name: POREC:digest_align_annotate (430); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d8a8d71b085782708158ac649a51e9] ~> TaskHandler[id: 440; name: POREC:digest_align_annotate (431); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/4224b77c0d7f9707af0aa2fe845e49] ~> TaskHandler[id: 442; name: POREC:digest_align_annotate (433); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/fb1686347be40d40d7ca41bdddea20] ~> TaskHandler[id: 441; name: POREC:digest_align_annotate (432); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1e897d954f1a20c5301e888c86405f] ~> TaskHandler[id: 443; name: POREC:digest_align_annotate (434); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/d50e6688788a4155d13db88b48759b] ~> TaskHandler[id: 444; name: POREC:digest_align_annotate (435); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/46ef50992bc930ade30b4610e601b1] ~> TaskHandler[id: 445; name: POREC:digest_align_annotate (436); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/460f36e4826dfda106a61f6558bbea] ~> TaskHandler[id: 446; name: POREC:digest_align_annotate (437); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/1f1c69220053aa33cb481d2d15a7ad] ~> TaskHandler[id: 448; name: POREC:digest_align_annotate (439); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/6f9f0f76a27ef06cd21fa9800a60a2] .. remaining tasks omitted. Aug-17 10:35:27.128 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 436; name: POREC:digest_align_annotate (427); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/05424885f52ec0623d65884f949f94] Aug-17 10:35:27.129 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (427)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/05424885f52ec0623d65884f949f94/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:35:27.130 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:35:27.158 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:35:27.158 [Task submitter] INFO nextflow.Session - [b8/1707ba] Submitted process > POREC:digest_align_annotate (429) Aug-17 10:37:07.546 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 438; name: POREC:digest_align_annotate (429); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/1707ba73e2d9b12b0890fcee2d7d10] Aug-17 10:37:07.546 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (429)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/1707ba73e2d9b12b0890fcee2d7d10/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:37:07.547 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:37:07.574 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:37:07.574 [Task submitter] INFO nextflow.Session - [df/d8a8d7] Submitted process > POREC:digest_align_annotate (430) Aug-17 10:38:37.348 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 439; name: POREC:digest_align_annotate (430); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d8a8d71b085782708158ac649a51e9] Aug-17 10:38:53.946 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 439; name: POREC:digest_align_annotate (430); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d8a8d71b085782708158ac649a51e9] Aug-17 10:38:53.948 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (430)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/d8a8d71b085782708158ac649a51e9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:38:53.949 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:38:53.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:38:53.955 [Task submitter] INFO nextflow.Session - [b9/4224b7] Submitted process > POREC:digest_align_annotate (431) Aug-17 10:40:06.166 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 442; name: POREC:digest_align_annotate (433); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/fb1686347be40d40d7ca41bdddea20] ~> TaskHandler[id: 441; name: POREC:digest_align_annotate (432); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1e897d954f1a20c5301e888c86405f] ~> TaskHandler[id: 443; name: POREC:digest_align_annotate (434); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/d50e6688788a4155d13db88b48759b] ~> TaskHandler[id: 444; name: POREC:digest_align_annotate (435); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/46ef50992bc930ade30b4610e601b1] ~> TaskHandler[id: 445; name: POREC:digest_align_annotate (436); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/460f36e4826dfda106a61f6558bbea] ~> TaskHandler[id: 446; name: POREC:digest_align_annotate (437); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/1f1c69220053aa33cb481d2d15a7ad] ~> TaskHandler[id: 448; name: POREC:digest_align_annotate (439); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/6f9f0f76a27ef06cd21fa9800a60a2] ~> TaskHandler[id: 447; name: POREC:digest_align_annotate (438); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/64b19e9fbf98360bf2f92da2c840f8] ~> TaskHandler[id: 449; name: POREC:digest_align_annotate (440); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/cdd2ad776e9aa746b449328343190d] ~> TaskHandler[id: 450; name: POREC:digest_align_annotate (441); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/b1a235a0df30af40390866494acafe] .. remaining tasks omitted. Aug-17 10:40:26.938 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 440; name: POREC:digest_align_annotate (431); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/4224b77c0d7f9707af0aa2fe845e49] Aug-17 10:40:26.939 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (431)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/4224b77c0d7f9707af0aa2fe845e49/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:40:26.940 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:40:27.028 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:40:27.029 [Task submitter] INFO nextflow.Session - [7a/fb1686] Submitted process > POREC:digest_align_annotate (433) Aug-17 10:42:06.983 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 442; name: POREC:digest_align_annotate (433); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/fb1686347be40d40d7ca41bdddea20] Aug-17 10:42:06.985 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (433)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/fb1686347be40d40d7ca41bdddea20/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:42:06.987 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:42:06.992 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:42:06.993 [Task submitter] INFO nextflow.Session - [b7/1e897d] Submitted process > POREC:digest_align_annotate (432) Aug-17 10:43:37.447 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 441; name: POREC:digest_align_annotate (432); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1e897d954f1a20c5301e888c86405f] Aug-17 10:43:44.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 441; name: POREC:digest_align_annotate (432); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1e897d954f1a20c5301e888c86405f] Aug-17 10:43:44.715 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (432)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1e897d954f1a20c5301e888c86405f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:43:44.719 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:43:44.732 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:43:44.732 [Task submitter] INFO nextflow.Session - [8b/d50e66] Submitted process > POREC:digest_align_annotate (434) Aug-17 10:45:07.012 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 444; name: POREC:digest_align_annotate (435); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/46ef50992bc930ade30b4610e601b1] ~> TaskHandler[id: 445; name: POREC:digest_align_annotate (436); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/460f36e4826dfda106a61f6558bbea] ~> TaskHandler[id: 446; name: POREC:digest_align_annotate (437); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/1f1c69220053aa33cb481d2d15a7ad] ~> TaskHandler[id: 448; name: POREC:digest_align_annotate (439); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/6f9f0f76a27ef06cd21fa9800a60a2] ~> TaskHandler[id: 447; name: POREC:digest_align_annotate (438); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/64b19e9fbf98360bf2f92da2c840f8] ~> TaskHandler[id: 449; name: POREC:digest_align_annotate (440); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/cdd2ad776e9aa746b449328343190d] ~> TaskHandler[id: 450; name: POREC:digest_align_annotate (441); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/b1a235a0df30af40390866494acafe] ~> TaskHandler[id: 451; name: POREC:digest_align_annotate (442); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7e07bf8ea2660eda37fc31652c2668] ~> TaskHandler[id: 452; name: POREC:digest_align_annotate (443); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/53364da6b881215757be4ff9e973db] ~> TaskHandler[id: 453; name: POREC:digest_align_annotate (444); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/faefc8bf9414eb1d549a385930ddff] .. remaining tasks omitted. Aug-17 10:45:17.168 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 443; name: POREC:digest_align_annotate (434); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/d50e6688788a4155d13db88b48759b] Aug-17 10:45:17.169 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (434)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/d50e6688788a4155d13db88b48759b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:45:17.170 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:45:17.179 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:45:17.179 [Task submitter] INFO nextflow.Session - [6d/46ef50] Submitted process > POREC:digest_align_annotate (435) Aug-17 10:46:52.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 444; name: POREC:digest_align_annotate (435); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/46ef50992bc930ade30b4610e601b1] Aug-17 10:46:52.619 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (435)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/46ef50992bc930ade30b4610e601b1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:46:52.621 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:46:52.628 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:46:52.628 [Task submitter] INFO nextflow.Session - [0b/460f36] Submitted process > POREC:digest_align_annotate (436) Aug-17 10:48:26.666 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 445; name: POREC:digest_align_annotate (436); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/460f36e4826dfda106a61f6558bbea] Aug-17 10:48:26.667 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (436)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/460f36e4826dfda106a61f6558bbea/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:48:26.669 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:48:26.688 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:48:26.688 [Task submitter] INFO nextflow.Session - [e7/1f1c69] Submitted process > POREC:digest_align_annotate (437) Aug-17 10:48:37.477 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 446; name: POREC:digest_align_annotate (437); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/1f1c69220053aa33cb481d2d15a7ad] Aug-17 10:50:03.707 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 446; name: POREC:digest_align_annotate (437); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/1f1c69220053aa33cb481d2d15a7ad] Aug-17 10:50:03.708 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (437)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/1f1c69220053aa33cb481d2d15a7ad/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:50:03.708 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:50:03.713 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:50:03.713 [Task submitter] INFO nextflow.Session - [5c/6f9f0f] Submitted process > POREC:digest_align_annotate (439) Aug-17 10:50:07.732 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 447; name: POREC:digest_align_annotate (438); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/64b19e9fbf98360bf2f92da2c840f8] ~> TaskHandler[id: 449; name: POREC:digest_align_annotate (440); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/cdd2ad776e9aa746b449328343190d] ~> TaskHandler[id: 450; name: POREC:digest_align_annotate (441); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/b1a235a0df30af40390866494acafe] ~> TaskHandler[id: 451; name: POREC:digest_align_annotate (442); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7e07bf8ea2660eda37fc31652c2668] ~> TaskHandler[id: 452; name: POREC:digest_align_annotate (443); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/53364da6b881215757be4ff9e973db] ~> TaskHandler[id: 453; name: POREC:digest_align_annotate (444); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/faefc8bf9414eb1d549a385930ddff] ~> TaskHandler[id: 454; name: POREC:digest_align_annotate (445); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/68b717025166589e2d3325cadc54e7] ~> TaskHandler[id: 456; name: POREC:digest_align_annotate (447); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/bfc35c9d8ebff5d37e897de3f0e162] ~> TaskHandler[id: 455; name: POREC:digest_align_annotate (446); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/c74521d708db729fb4b7dd3f242cf8] ~> TaskHandler[id: 457; name: POREC:digest_align_annotate (448); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/58d0d4210b25e99c531c129cb8b62b] .. remaining tasks omitted. Aug-17 10:51:38.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 448; name: POREC:digest_align_annotate (439); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/6f9f0f76a27ef06cd21fa9800a60a2] Aug-17 10:51:38.705 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (439)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/6f9f0f76a27ef06cd21fa9800a60a2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:51:38.706 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:51:38.724 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:51:38.724 [Task submitter] INFO nextflow.Session - [61/64b19e] Submitted process > POREC:digest_align_annotate (438) Aug-17 10:53:21.311 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 447; name: POREC:digest_align_annotate (438); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/64b19e9fbf98360bf2f92da2c840f8] Aug-17 10:53:21.313 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (438)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/64b19e9fbf98360bf2f92da2c840f8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:53:21.314 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:53:21.345 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:53:21.345 [Task submitter] INFO nextflow.Session - [02/cdd2ad] Submitted process > POREC:digest_align_annotate (440) Aug-17 10:53:37.531 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 449; name: POREC:digest_align_annotate (440); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/cdd2ad776e9aa746b449328343190d] Aug-17 10:55:08.668 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 450; name: POREC:digest_align_annotate (441); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/b1a235a0df30af40390866494acafe] ~> TaskHandler[id: 451; name: POREC:digest_align_annotate (442); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7e07bf8ea2660eda37fc31652c2668] ~> TaskHandler[id: 452; name: POREC:digest_align_annotate (443); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/53364da6b881215757be4ff9e973db] ~> TaskHandler[id: 453; name: POREC:digest_align_annotate (444); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/faefc8bf9414eb1d549a385930ddff] ~> TaskHandler[id: 454; name: POREC:digest_align_annotate (445); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/68b717025166589e2d3325cadc54e7] ~> TaskHandler[id: 456; name: POREC:digest_align_annotate (447); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/bfc35c9d8ebff5d37e897de3f0e162] ~> TaskHandler[id: 455; name: POREC:digest_align_annotate (446); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/c74521d708db729fb4b7dd3f242cf8] ~> TaskHandler[id: 457; name: POREC:digest_align_annotate (448); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/58d0d4210b25e99c531c129cb8b62b] ~> TaskHandler[id: 458; name: POREC:digest_align_annotate (449); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/0b49b5fb52768f568bb87c01cd42fd] ~> TaskHandler[id: 488; name: POREC:digest_align_annotate (479); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/303b0f23f12ed39289c9e265e9f49e] .. remaining tasks omitted. Aug-17 10:55:09.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 449; name: POREC:digest_align_annotate (440); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/cdd2ad776e9aa746b449328343190d] Aug-17 10:55:09.648 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (440)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/cdd2ad776e9aa746b449328343190d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:55:09.650 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:55:09.724 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:55:09.724 [Task submitter] INFO nextflow.Session - [22/b1a235] Submitted process > POREC:digest_align_annotate (441) Aug-17 10:56:46.027 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 450; name: POREC:digest_align_annotate (441); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/b1a235a0df30af40390866494acafe] Aug-17 10:56:46.028 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (441)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/b1a235a0df30af40390866494acafe/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:56:46.029 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:56:46.068 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:56:46.068 [Task submitter] INFO nextflow.Session - [47/7e07bf] Submitted process > POREC:digest_align_annotate (442) Aug-17 10:58:28.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 451; name: POREC:digest_align_annotate (442); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7e07bf8ea2660eda37fc31652c2668] Aug-17 10:58:28.772 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (442)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7e07bf8ea2660eda37fc31652c2668/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 10:58:28.773 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 10:58:28.778 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 10:58:28.778 [Task submitter] INFO nextflow.Session - [d8/53364d] Submitted process > POREC:digest_align_annotate (443) Aug-17 10:58:37.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 452; name: POREC:digest_align_annotate (443); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/53364da6b881215757be4ff9e973db] Aug-17 11:00:09.085 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 453; name: POREC:digest_align_annotate (444); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/faefc8bf9414eb1d549a385930ddff] ~> TaskHandler[id: 454; name: POREC:digest_align_annotate (445); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/68b717025166589e2d3325cadc54e7] ~> TaskHandler[id: 456; name: POREC:digest_align_annotate (447); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/bfc35c9d8ebff5d37e897de3f0e162] ~> TaskHandler[id: 455; name: POREC:digest_align_annotate (446); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/c74521d708db729fb4b7dd3f242cf8] ~> TaskHandler[id: 457; name: POREC:digest_align_annotate (448); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/58d0d4210b25e99c531c129cb8b62b] ~> TaskHandler[id: 458; name: POREC:digest_align_annotate (449); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/0b49b5fb52768f568bb87c01cd42fd] ~> TaskHandler[id: 488; name: POREC:digest_align_annotate (479); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/303b0f23f12ed39289c9e265e9f49e] ~> TaskHandler[id: 459; name: POREC:digest_align_annotate (450); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/cb9c6d214378ed924aff5eff949a61] ~> TaskHandler[id: 460; name: POREC:digest_align_annotate (451); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/8cdc47af2f103c0bc74a96557a9fc8] ~> TaskHandler[id: 461; name: POREC:digest_align_annotate (452); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/d81643dcc9e52a679bd4ea31e13d90] .. remaining tasks omitted. Aug-17 11:00:17.142 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 452; name: POREC:digest_align_annotate (443); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/53364da6b881215757be4ff9e973db] Aug-17 11:00:17.144 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (443)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/53364da6b881215757be4ff9e973db/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:00:17.145 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:00:17.153 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:00:17.153 [Task submitter] INFO nextflow.Session - [da/faefc8] Submitted process > POREC:digest_align_annotate (444) Aug-17 11:02:04.364 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 453; name: POREC:digest_align_annotate (444); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/faefc8bf9414eb1d549a385930ddff] Aug-17 11:02:04.364 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (444)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/faefc8bf9414eb1d549a385930ddff/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:02:04.364 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:02:04.382 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:02:04.382 [Task submitter] INFO nextflow.Session - [2f/68b717] Submitted process > POREC:digest_align_annotate (445) Aug-17 11:03:37.677 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 454; name: POREC:digest_align_annotate (445); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/68b717025166589e2d3325cadc54e7] Aug-17 11:03:59.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 454; name: POREC:digest_align_annotate (445); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/68b717025166589e2d3325cadc54e7] Aug-17 11:03:59.060 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (445)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/68b717025166589e2d3325cadc54e7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:03:59.061 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:03:59.083 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:03:59.083 [Task submitter] INFO nextflow.Session - [f4/bfc35c] Submitted process > POREC:digest_align_annotate (447) Aug-17 11:05:09.330 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 455; name: POREC:digest_align_annotate (446); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/c74521d708db729fb4b7dd3f242cf8] ~> TaskHandler[id: 457; name: POREC:digest_align_annotate (448); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/58d0d4210b25e99c531c129cb8b62b] ~> TaskHandler[id: 458; name: POREC:digest_align_annotate (449); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/0b49b5fb52768f568bb87c01cd42fd] ~> TaskHandler[id: 488; name: POREC:digest_align_annotate (479); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/303b0f23f12ed39289c9e265e9f49e] ~> TaskHandler[id: 459; name: POREC:digest_align_annotate (450); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/cb9c6d214378ed924aff5eff949a61] ~> TaskHandler[id: 460; name: POREC:digest_align_annotate (451); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/8cdc47af2f103c0bc74a96557a9fc8] ~> TaskHandler[id: 461; name: POREC:digest_align_annotate (452); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/d81643dcc9e52a679bd4ea31e13d90] ~> TaskHandler[id: 462; name: POREC:digest_align_annotate (453); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b21c4e049e83848eeae81479a5be] ~> TaskHandler[id: 464; name: POREC:digest_align_annotate (455); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6601959352d65523ba14f6c242cf13] ~> TaskHandler[id: 463; name: POREC:digest_align_annotate (454); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/fd404b46b1172f86b96c2585a34839] .. remaining tasks omitted. Aug-17 11:05:55.806 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 456; name: POREC:digest_align_annotate (447); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/bfc35c9d8ebff5d37e897de3f0e162] Aug-17 11:05:55.807 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (447)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/bfc35c9d8ebff5d37e897de3f0e162/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:05:55.808 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:05:55.824 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:05:55.847 [Task submitter] INFO nextflow.Session - [14/c74521] Submitted process > POREC:digest_align_annotate (446) Aug-17 11:07:43.272 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 455; name: POREC:digest_align_annotate (446); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/c74521d708db729fb4b7dd3f242cf8] Aug-17 11:07:43.274 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (446)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/c74521d708db729fb4b7dd3f242cf8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:07:43.275 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:07:43.286 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:07:43.287 [Task submitter] INFO nextflow.Session - [9d/58d0d4] Submitted process > POREC:digest_align_annotate (448) Aug-17 11:08:37.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 457; name: POREC:digest_align_annotate (448); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/58d0d4210b25e99c531c129cb8b62b] Aug-17 11:09:20.838 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 457; name: POREC:digest_align_annotate (448); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/58d0d4210b25e99c531c129cb8b62b] Aug-17 11:09:20.838 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (448)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/58d0d4210b25e99c531c129cb8b62b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:09:20.839 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:09:20.869 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:09:20.869 [Task submitter] INFO nextflow.Session - [9c/0b49b5] Submitted process > POREC:digest_align_annotate (449) Aug-17 11:10:10.029 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 488; name: POREC:digest_align_annotate (479); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/303b0f23f12ed39289c9e265e9f49e] ~> TaskHandler[id: 459; name: POREC:digest_align_annotate (450); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/cb9c6d214378ed924aff5eff949a61] ~> TaskHandler[id: 460; name: POREC:digest_align_annotate (451); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/8cdc47af2f103c0bc74a96557a9fc8] ~> TaskHandler[id: 461; name: POREC:digest_align_annotate (452); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/d81643dcc9e52a679bd4ea31e13d90] ~> TaskHandler[id: 462; name: POREC:digest_align_annotate (453); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b21c4e049e83848eeae81479a5be] ~> TaskHandler[id: 464; name: POREC:digest_align_annotate (455); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6601959352d65523ba14f6c242cf13] ~> TaskHandler[id: 463; name: POREC:digest_align_annotate (454); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/fd404b46b1172f86b96c2585a34839] ~> TaskHandler[id: 465; name: POREC:digest_align_annotate (456); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/3fec5c6974e9cd99190543a2c1b812] ~> TaskHandler[id: 466; name: POREC:digest_align_annotate (457); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/e0088a8226db27ca15136a8782014f] ~> TaskHandler[id: 467; name: POREC:digest_align_annotate (458); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/907f309de459ad65eb2d525ae0d472] .. remaining tasks omitted. Aug-17 11:11:10.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 458; name: POREC:digest_align_annotate (449); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/0b49b5fb52768f568bb87c01cd42fd] Aug-17 11:11:10.496 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (449)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/0b49b5fb52768f568bb87c01cd42fd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:11:10.497 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:11:10.518 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:11:10.518 [Task submitter] INFO nextflow.Session - [3b/303b0f] Submitted process > POREC:digest_align_annotate (479) Aug-17 11:12:47.025 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 488; name: POREC:digest_align_annotate (479); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/303b0f23f12ed39289c9e265e9f49e] Aug-17 11:12:47.027 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (479)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/303b0f23f12ed39289c9e265e9f49e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:12:47.028 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:12:47.076 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:12:47.076 [Task submitter] INFO nextflow.Session - [19/cb9c6d] Submitted process > POREC:digest_align_annotate (450) Aug-17 11:13:37.790 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 459; name: POREC:digest_align_annotate (450); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/cb9c6d214378ed924aff5eff949a61] Aug-17 11:14:20.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 459; name: POREC:digest_align_annotate (450); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/cb9c6d214378ed924aff5eff949a61] Aug-17 11:14:20.110 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (450)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/cb9c6d214378ed924aff5eff949a61/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:14:20.110 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:14:20.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:14:20.163 [Task submitter] INFO nextflow.Session - [46/8cdc47] Submitted process > POREC:digest_align_annotate (451) Aug-17 11:15:10.314 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 461; name: POREC:digest_align_annotate (452); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/d81643dcc9e52a679bd4ea31e13d90] ~> TaskHandler[id: 462; name: POREC:digest_align_annotate (453); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b21c4e049e83848eeae81479a5be] ~> TaskHandler[id: 464; name: POREC:digest_align_annotate (455); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6601959352d65523ba14f6c242cf13] ~> TaskHandler[id: 463; name: POREC:digest_align_annotate (454); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/fd404b46b1172f86b96c2585a34839] ~> TaskHandler[id: 465; name: POREC:digest_align_annotate (456); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/3fec5c6974e9cd99190543a2c1b812] ~> TaskHandler[id: 466; name: POREC:digest_align_annotate (457); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/e0088a8226db27ca15136a8782014f] ~> TaskHandler[id: 467; name: POREC:digest_align_annotate (458); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/907f309de459ad65eb2d525ae0d472] ~> TaskHandler[id: 468; name: POREC:digest_align_annotate (459); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/6b72f72e3494e9d69235c71353178f] ~> TaskHandler[id: 469; name: POREC:digest_align_annotate (460); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/0c735047b9f724f2266389a07b2824] ~> TaskHandler[id: 470; name: POREC:digest_align_annotate (461); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/f01353bc45369a1de08b6451ae2071] .. remaining tasks omitted. Aug-17 11:15:54.998 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 460; name: POREC:digest_align_annotate (451); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/8cdc47af2f103c0bc74a96557a9fc8] Aug-17 11:15:54.998 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (451)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/8cdc47af2f103c0bc74a96557a9fc8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:15:54.999 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:15:55.005 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:15:55.005 [Task submitter] INFO nextflow.Session - [25/d81643] Submitted process > POREC:digest_align_annotate (452) Aug-17 11:17:29.129 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 461; name: POREC:digest_align_annotate (452); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/d81643dcc9e52a679bd4ea31e13d90] Aug-17 11:17:29.131 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (452)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/d81643dcc9e52a679bd4ea31e13d90/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:17:29.156 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:17:29.156 [Task submitter] INFO nextflow.Session - [11/13b21c] Submitted process > POREC:digest_align_annotate (453) Aug-17 11:17:29.157 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:18:37.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 462; name: POREC:digest_align_annotate (453); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b21c4e049e83848eeae81479a5be] Aug-17 11:19:07.608 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 462; name: POREC:digest_align_annotate (453); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b21c4e049e83848eeae81479a5be] Aug-17 11:19:07.609 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (453)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b21c4e049e83848eeae81479a5be/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:19:07.609 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:19:07.646 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:19:07.646 [Task submitter] INFO nextflow.Session - [ce/660195] Submitted process > POREC:digest_align_annotate (455) Aug-17 11:20:10.826 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 463; name: POREC:digest_align_annotate (454); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/fd404b46b1172f86b96c2585a34839] ~> TaskHandler[id: 465; name: POREC:digest_align_annotate (456); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/3fec5c6974e9cd99190543a2c1b812] ~> TaskHandler[id: 466; name: POREC:digest_align_annotate (457); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/e0088a8226db27ca15136a8782014f] ~> TaskHandler[id: 467; name: POREC:digest_align_annotate (458); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/907f309de459ad65eb2d525ae0d472] ~> TaskHandler[id: 468; name: POREC:digest_align_annotate (459); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/6b72f72e3494e9d69235c71353178f] ~> TaskHandler[id: 469; name: POREC:digest_align_annotate (460); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/0c735047b9f724f2266389a07b2824] ~> TaskHandler[id: 470; name: POREC:digest_align_annotate (461); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/f01353bc45369a1de08b6451ae2071] ~> TaskHandler[id: 471; name: POREC:digest_align_annotate (462); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/4d147b70f12e642203f8000679e240] ~> TaskHandler[id: 472; name: POREC:digest_align_annotate (463); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/bc8092b3ec5279f611c96aad154689] ~> TaskHandler[id: 473; name: POREC:digest_align_annotate (464); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/881e58e73b620366550966ba5de103] .. remaining tasks omitted. Aug-17 11:20:42.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 464; name: POREC:digest_align_annotate (455); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6601959352d65523ba14f6c242cf13] Aug-17 11:20:42.265 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (455)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6601959352d65523ba14f6c242cf13/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:20:42.266 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:20:42.275 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:20:42.275 [Task submitter] INFO nextflow.Session - [a6/fd404b] Submitted process > POREC:digest_align_annotate (454) Aug-17 11:22:20.051 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 463; name: POREC:digest_align_annotate (454); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/fd404b46b1172f86b96c2585a34839] Aug-17 11:22:20.051 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (454)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/fd404b46b1172f86b96c2585a34839/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:22:20.052 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:22:20.085 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:22:20.085 [Task submitter] INFO nextflow.Session - [c3/3fec5c] Submitted process > POREC:digest_align_annotate (456) Aug-17 11:23:37.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 465; name: POREC:digest_align_annotate (456); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/3fec5c6974e9cd99190543a2c1b812] Aug-17 11:24:03.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 465; name: POREC:digest_align_annotate (456); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/3fec5c6974e9cd99190543a2c1b812] Aug-17 11:24:03.630 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (456)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/3fec5c6974e9cd99190543a2c1b812/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:24:03.631 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:24:03.657 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:24:03.657 [Task submitter] INFO nextflow.Session - [3a/e0088a] Submitted process > POREC:digest_align_annotate (457) Aug-17 11:25:10.855 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 467; name: POREC:digest_align_annotate (458); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/907f309de459ad65eb2d525ae0d472] ~> TaskHandler[id: 468; name: POREC:digest_align_annotate (459); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/6b72f72e3494e9d69235c71353178f] ~> TaskHandler[id: 469; name: POREC:digest_align_annotate (460); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/0c735047b9f724f2266389a07b2824] ~> TaskHandler[id: 470; name: POREC:digest_align_annotate (461); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/f01353bc45369a1de08b6451ae2071] ~> TaskHandler[id: 471; name: POREC:digest_align_annotate (462); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/4d147b70f12e642203f8000679e240] ~> TaskHandler[id: 472; name: POREC:digest_align_annotate (463); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/bc8092b3ec5279f611c96aad154689] ~> TaskHandler[id: 473; name: POREC:digest_align_annotate (464); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/881e58e73b620366550966ba5de103] ~> TaskHandler[id: 477; name: POREC:digest_align_annotate (468); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/62ebf8cfd54bdc4bdf6a7173761fee] ~> TaskHandler[id: 475; name: POREC:digest_align_annotate (466); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/4a471ff1d51e0f802788492e863f1e] ~> TaskHandler[id: 474; name: POREC:digest_align_annotate (465); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/b80f0e0f38a496b04e3b85e59e9086] .. remaining tasks omitted. Aug-17 11:25:33.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 466; name: POREC:digest_align_annotate (457); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/e0088a8226db27ca15136a8782014f] Aug-17 11:25:33.254 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (457)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/e0088a8226db27ca15136a8782014f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:25:33.255 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:25:33.291 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:25:33.291 [Task submitter] INFO nextflow.Session - [02/907f30] Submitted process > POREC:digest_align_annotate (458) Aug-17 11:27:15.199 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 467; name: POREC:digest_align_annotate (458); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/907f309de459ad65eb2d525ae0d472] Aug-17 11:27:15.200 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (458)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/907f309de459ad65eb2d525ae0d472/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:27:15.201 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:27:15.221 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:27:15.221 [Task submitter] INFO nextflow.Session - [50/6b72f7] Submitted process > POREC:digest_align_annotate (459) Aug-17 11:28:37.899 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 468; name: POREC:digest_align_annotate (459); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/6b72f72e3494e9d69235c71353178f] Aug-17 11:29:02.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 468; name: POREC:digest_align_annotate (459); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/6b72f72e3494e9d69235c71353178f] Aug-17 11:29:02.858 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (459)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/6b72f72e3494e9d69235c71353178f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:29:02.859 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:29:02.882 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:29:02.882 [Task submitter] INFO nextflow.Session - [43/0c7350] Submitted process > POREC:digest_align_annotate (460) Aug-17 11:30:11.084 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 470; name: POREC:digest_align_annotate (461); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/f01353bc45369a1de08b6451ae2071] ~> TaskHandler[id: 471; name: POREC:digest_align_annotate (462); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/4d147b70f12e642203f8000679e240] ~> TaskHandler[id: 472; name: POREC:digest_align_annotate (463); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/bc8092b3ec5279f611c96aad154689] ~> TaskHandler[id: 473; name: POREC:digest_align_annotate (464); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/881e58e73b620366550966ba5de103] ~> TaskHandler[id: 477; name: POREC:digest_align_annotate (468); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/62ebf8cfd54bdc4bdf6a7173761fee] ~> TaskHandler[id: 475; name: POREC:digest_align_annotate (466); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/4a471ff1d51e0f802788492e863f1e] ~> TaskHandler[id: 474; name: POREC:digest_align_annotate (465); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/b80f0e0f38a496b04e3b85e59e9086] ~> TaskHandler[id: 507; name: POREC:digest_align_annotate (498); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/01814d07e2493dfe5626b3e8f66cbe] ~> TaskHandler[id: 476; name: POREC:digest_align_annotate (467); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a62a1eb01d1b2a8075799e2da2b092] ~> TaskHandler[id: 478; name: POREC:digest_align_annotate (469); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/cda76329b76a2adc6e18fcb227e95b] .. remaining tasks omitted. Aug-17 11:30:40.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 469; name: POREC:digest_align_annotate (460); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/0c735047b9f724f2266389a07b2824] Aug-17 11:30:40.470 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (460)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/0c735047b9f724f2266389a07b2824/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:30:40.470 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:30:40.494 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:30:40.495 [Task submitter] INFO nextflow.Session - [eb/f01353] Submitted process > POREC:digest_align_annotate (461) Aug-17 11:32:17.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 470; name: POREC:digest_align_annotate (461); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/f01353bc45369a1de08b6451ae2071] Aug-17 11:32:17.159 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (461)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/f01353bc45369a1de08b6451ae2071/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:32:17.160 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:32:17.191 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:32:17.221 [Task submitter] INFO nextflow.Session - [15/4d147b] Submitted process > POREC:digest_align_annotate (462) Aug-17 11:33:37.980 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 471; name: POREC:digest_align_annotate (462); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/4d147b70f12e642203f8000679e240] Aug-17 11:33:55.201 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 471; name: POREC:digest_align_annotate (462); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/4d147b70f12e642203f8000679e240] Aug-17 11:33:55.202 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (462)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/4d147b70f12e642203f8000679e240/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:33:55.204 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:33:55.238 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:33:55.238 [Task submitter] INFO nextflow.Session - [be/bc8092] Submitted process > POREC:digest_align_annotate (463) Aug-17 11:35:11.468 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 473; name: POREC:digest_align_annotate (464); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/881e58e73b620366550966ba5de103] ~> TaskHandler[id: 477; name: POREC:digest_align_annotate (468); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/62ebf8cfd54bdc4bdf6a7173761fee] ~> TaskHandler[id: 475; name: POREC:digest_align_annotate (466); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/4a471ff1d51e0f802788492e863f1e] ~> TaskHandler[id: 474; name: POREC:digest_align_annotate (465); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/b80f0e0f38a496b04e3b85e59e9086] ~> TaskHandler[id: 507; name: POREC:digest_align_annotate (498); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/01814d07e2493dfe5626b3e8f66cbe] ~> TaskHandler[id: 476; name: POREC:digest_align_annotate (467); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a62a1eb01d1b2a8075799e2da2b092] ~> TaskHandler[id: 478; name: POREC:digest_align_annotate (469); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/cda76329b76a2adc6e18fcb227e95b] ~> TaskHandler[id: 481; name: POREC:digest_align_annotate (472); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/dd6ad9b01a63afe35845ecca5e51c4] ~> TaskHandler[id: 483; name: POREC:digest_align_annotate (474); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/8852a411b750b697fc687208bfb109] ~> TaskHandler[id: 482; name: POREC:digest_align_annotate (473); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/fd9ac4ad30b1ab6dfa0f92e1a4eec6] .. remaining tasks omitted. Aug-17 11:35:27.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 472; name: POREC:digest_align_annotate (463); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/bc8092b3ec5279f611c96aad154689] Aug-17 11:35:27.233 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (463)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/bc8092b3ec5279f611c96aad154689/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:35:27.234 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:35:27.265 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:35:27.266 [Task submitter] INFO nextflow.Session - [61/881e58] Submitted process > POREC:digest_align_annotate (464) Aug-17 11:37:05.461 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 473; name: POREC:digest_align_annotate (464); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/881e58e73b620366550966ba5de103] Aug-17 11:37:05.462 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (464)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/881e58e73b620366550966ba5de103/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:37:05.463 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:37:05.483 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:37:05.483 [Task submitter] INFO nextflow.Session - [99/62ebf8] Submitted process > POREC:digest_align_annotate (468) Aug-17 11:38:37.982 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 477; name: POREC:digest_align_annotate (468); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/62ebf8cfd54bdc4bdf6a7173761fee] Aug-17 11:38:47.957 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 477; name: POREC:digest_align_annotate (468); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/62ebf8cfd54bdc4bdf6a7173761fee] Aug-17 11:38:47.958 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (468)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/62ebf8cfd54bdc4bdf6a7173761fee/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:38:47.959 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:38:47.963 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:38:47.984 [Task submitter] INFO nextflow.Session - [e4/4a471f] Submitted process > POREC:digest_align_annotate (466) Aug-17 11:40:12.232 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 474; name: POREC:digest_align_annotate (465); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/b80f0e0f38a496b04e3b85e59e9086] ~> TaskHandler[id: 507; name: POREC:digest_align_annotate (498); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/01814d07e2493dfe5626b3e8f66cbe] ~> TaskHandler[id: 476; name: POREC:digest_align_annotate (467); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a62a1eb01d1b2a8075799e2da2b092] ~> TaskHandler[id: 478; name: POREC:digest_align_annotate (469); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/cda76329b76a2adc6e18fcb227e95b] ~> TaskHandler[id: 481; name: POREC:digest_align_annotate (472); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/dd6ad9b01a63afe35845ecca5e51c4] ~> TaskHandler[id: 483; name: POREC:digest_align_annotate (474); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/8852a411b750b697fc687208bfb109] ~> TaskHandler[id: 482; name: POREC:digest_align_annotate (473); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/fd9ac4ad30b1ab6dfa0f92e1a4eec6] ~> TaskHandler[id: 479; name: POREC:digest_align_annotate (470); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b02ef11125b40cce39bac4135de2ba] ~> TaskHandler[id: 480; name: POREC:digest_align_annotate (471); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/c272150464aabc6a7a71b15183a11d] ~> TaskHandler[id: 484; name: POREC:digest_align_annotate (475); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4922ce7b28e1ecdb8b34a55d76b5e2] .. remaining tasks omitted. Aug-17 11:40:25.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 475; name: POREC:digest_align_annotate (466); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/4a471ff1d51e0f802788492e863f1e] Aug-17 11:40:25.314 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (466)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/4a471ff1d51e0f802788492e863f1e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:40:25.315 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:40:25.329 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:40:25.329 [Task submitter] INFO nextflow.Session - [72/b80f0e] Submitted process > POREC:digest_align_annotate (465) Aug-17 11:42:12.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 474; name: POREC:digest_align_annotate (465); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/b80f0e0f38a496b04e3b85e59e9086] Aug-17 11:42:12.338 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (465)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/b80f0e0f38a496b04e3b85e59e9086/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:42:12.343 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:42:12.366 [Task submitter] INFO nextflow.Session - [d2/01814d] Submitted process > POREC:digest_align_annotate (498) Aug-17 11:42:12.366 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:43:38.060 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 507; name: POREC:digest_align_annotate (498); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/01814d07e2493dfe5626b3e8f66cbe] Aug-17 11:44:00.359 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 507; name: POREC:digest_align_annotate (498); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/01814d07e2493dfe5626b3e8f66cbe] Aug-17 11:44:00.361 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (498)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/01814d07e2493dfe5626b3e8f66cbe/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:44:00.362 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:44:00.375 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:44:00.375 [Task submitter] INFO nextflow.Session - [dc/a62a1e] Submitted process > POREC:digest_align_annotate (467) Aug-17 11:45:12.603 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 478; name: POREC:digest_align_annotate (469); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/cda76329b76a2adc6e18fcb227e95b] ~> TaskHandler[id: 481; name: POREC:digest_align_annotate (472); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/dd6ad9b01a63afe35845ecca5e51c4] ~> TaskHandler[id: 483; name: POREC:digest_align_annotate (474); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/8852a411b750b697fc687208bfb109] ~> TaskHandler[id: 482; name: POREC:digest_align_annotate (473); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/fd9ac4ad30b1ab6dfa0f92e1a4eec6] ~> TaskHandler[id: 479; name: POREC:digest_align_annotate (470); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b02ef11125b40cce39bac4135de2ba] ~> TaskHandler[id: 480; name: POREC:digest_align_annotate (471); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/c272150464aabc6a7a71b15183a11d] ~> TaskHandler[id: 484; name: POREC:digest_align_annotate (475); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4922ce7b28e1ecdb8b34a55d76b5e2] ~> TaskHandler[id: 485; name: POREC:digest_align_annotate (476); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2d135612e0e2ce2d8ac869d33cb515] ~> TaskHandler[id: 486; name: POREC:digest_align_annotate (477); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/04fabe77f41fce03a31a81b0b6c814] ~> TaskHandler[id: 487; name: POREC:digest_align_annotate (478); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/60e7c556a69a9f1b32ead7695c196c] .. remaining tasks omitted. Aug-17 11:45:46.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 476; name: POREC:digest_align_annotate (467); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a62a1eb01d1b2a8075799e2da2b092] Aug-17 11:45:46.047 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (467)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a62a1eb01d1b2a8075799e2da2b092/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:45:46.048 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:45:46.073 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:45:46.073 [Task submitter] INFO nextflow.Session - [3e/cda763] Submitted process > POREC:digest_align_annotate (469) Aug-17 11:47:41.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 478; name: POREC:digest_align_annotate (469); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/cda76329b76a2adc6e18fcb227e95b] Aug-17 11:47:41.165 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (469)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/cda76329b76a2adc6e18fcb227e95b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:47:41.166 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:47:41.173 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:47:41.173 [Task submitter] INFO nextflow.Session - [d8/dd6ad9] Submitted process > POREC:digest_align_annotate (472) Aug-17 11:48:38.123 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 481; name: POREC:digest_align_annotate (472); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/dd6ad9b01a63afe35845ecca5e51c4] Aug-17 11:49:27.018 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 481; name: POREC:digest_align_annotate (472); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/dd6ad9b01a63afe35845ecca5e51c4] Aug-17 11:49:27.019 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (472)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/dd6ad9b01a63afe35845ecca5e51c4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:49:27.019 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:49:27.039 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:49:27.039 [Task submitter] INFO nextflow.Session - [ba/8852a4] Submitted process > POREC:digest_align_annotate (474) Aug-17 11:50:13.195 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 482; name: POREC:digest_align_annotate (473); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/fd9ac4ad30b1ab6dfa0f92e1a4eec6] ~> TaskHandler[id: 479; name: POREC:digest_align_annotate (470); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b02ef11125b40cce39bac4135de2ba] ~> TaskHandler[id: 480; name: POREC:digest_align_annotate (471); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/c272150464aabc6a7a71b15183a11d] ~> TaskHandler[id: 484; name: POREC:digest_align_annotate (475); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4922ce7b28e1ecdb8b34a55d76b5e2] ~> TaskHandler[id: 485; name: POREC:digest_align_annotate (476); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2d135612e0e2ce2d8ac869d33cb515] ~> TaskHandler[id: 486; name: POREC:digest_align_annotate (477); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/04fabe77f41fce03a31a81b0b6c814] ~> TaskHandler[id: 487; name: POREC:digest_align_annotate (478); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/60e7c556a69a9f1b32ead7695c196c] ~> TaskHandler[id: 489; name: POREC:digest_align_annotate (480); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/126fbea60b05ae5e501f384a900adf] ~> TaskHandler[id: 491; name: POREC:digest_align_annotate (482); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be54822e4d874ccfd21d2ccdcb1ab5] ~> TaskHandler[id: 490; name: POREC:digest_align_annotate (481); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/f772cb8e63f9d89f5bc24f301a55a2] .. remaining tasks omitted. Aug-17 11:51:11.422 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 483; name: POREC:digest_align_annotate (474); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/8852a411b750b697fc687208bfb109] Aug-17 11:51:11.423 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (474)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/8852a411b750b697fc687208bfb109/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:51:11.424 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:51:11.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:51:11.445 [Task submitter] INFO nextflow.Session - [f2/fd9ac4] Submitted process > POREC:digest_align_annotate (473) Aug-17 11:53:00.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 482; name: POREC:digest_align_annotate (473); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/fd9ac4ad30b1ab6dfa0f92e1a4eec6] Aug-17 11:53:00.264 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (473)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/fd9ac4ad30b1ab6dfa0f92e1a4eec6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:53:00.265 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:53:00.271 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:53:00.271 [Task submitter] INFO nextflow.Session - [82/b02ef1] Submitted process > POREC:digest_align_annotate (470) Aug-17 11:53:38.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 479; name: POREC:digest_align_annotate (470); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b02ef11125b40cce39bac4135de2ba] Aug-17 11:54:43.900 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 479; name: POREC:digest_align_annotate (470); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b02ef11125b40cce39bac4135de2ba] Aug-17 11:54:43.902 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (470)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b02ef11125b40cce39bac4135de2ba/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:54:43.903 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:54:43.911 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:54:43.911 [Task submitter] INFO nextflow.Session - [9e/c27215] Submitted process > POREC:digest_align_annotate (471) Aug-17 11:55:14.019 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 484; name: POREC:digest_align_annotate (475); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4922ce7b28e1ecdb8b34a55d76b5e2] ~> TaskHandler[id: 485; name: POREC:digest_align_annotate (476); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2d135612e0e2ce2d8ac869d33cb515] ~> TaskHandler[id: 486; name: POREC:digest_align_annotate (477); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/04fabe77f41fce03a31a81b0b6c814] ~> TaskHandler[id: 487; name: POREC:digest_align_annotate (478); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/60e7c556a69a9f1b32ead7695c196c] ~> TaskHandler[id: 489; name: POREC:digest_align_annotate (480); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/126fbea60b05ae5e501f384a900adf] ~> TaskHandler[id: 491; name: POREC:digest_align_annotate (482); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be54822e4d874ccfd21d2ccdcb1ab5] ~> TaskHandler[id: 490; name: POREC:digest_align_annotate (481); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/f772cb8e63f9d89f5bc24f301a55a2] ~> TaskHandler[id: 492; name: POREC:digest_align_annotate (483); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/dbc75efde6bd8cfa68446a0ba947f6] ~> TaskHandler[id: 494; name: POREC:digest_align_annotate (485); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/d964339474f3ba500662868cadfa7a] ~> TaskHandler[id: 495; name: POREC:digest_align_annotate (486); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/a36e97f84fbe1fbe5edc0b9f888d35] .. remaining tasks omitted. Aug-17 11:56:14.701 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 480; name: POREC:digest_align_annotate (471); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/c272150464aabc6a7a71b15183a11d] Aug-17 11:56:14.703 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (471)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/c272150464aabc6a7a71b15183a11d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:56:14.705 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:56:14.710 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:56:14.725 [Task submitter] INFO nextflow.Session - [34/4922ce] Submitted process > POREC:digest_align_annotate (475) Aug-17 11:57:53.295 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 484; name: POREC:digest_align_annotate (475); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4922ce7b28e1ecdb8b34a55d76b5e2] Aug-17 11:57:53.296 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (475)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4922ce7b28e1ecdb8b34a55d76b5e2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:57:53.297 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:57:53.303 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:57:53.303 [Task submitter] INFO nextflow.Session - [a9/2d1356] Submitted process > POREC:digest_align_annotate (476) Aug-17 11:58:38.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 485; name: POREC:digest_align_annotate (476); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2d135612e0e2ce2d8ac869d33cb515] Aug-17 11:59:29.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 485; name: POREC:digest_align_annotate (476); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2d135612e0e2ce2d8ac869d33cb515] Aug-17 11:59:29.691 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (476)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/2d135612e0e2ce2d8ac869d33cb515/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 11:59:29.692 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 11:59:29.700 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 11:59:29.700 [Task submitter] INFO nextflow.Session - [a1/04fabe] Submitted process > POREC:digest_align_annotate (477) Aug-17 12:00:14.844 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 487; name: POREC:digest_align_annotate (478); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/60e7c556a69a9f1b32ead7695c196c] ~> TaskHandler[id: 489; name: POREC:digest_align_annotate (480); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/126fbea60b05ae5e501f384a900adf] ~> TaskHandler[id: 491; name: POREC:digest_align_annotate (482); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be54822e4d874ccfd21d2ccdcb1ab5] ~> TaskHandler[id: 490; name: POREC:digest_align_annotate (481); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/f772cb8e63f9d89f5bc24f301a55a2] ~> TaskHandler[id: 492; name: POREC:digest_align_annotate (483); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/dbc75efde6bd8cfa68446a0ba947f6] ~> TaskHandler[id: 494; name: POREC:digest_align_annotate (485); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/d964339474f3ba500662868cadfa7a] ~> TaskHandler[id: 495; name: POREC:digest_align_annotate (486); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/a36e97f84fbe1fbe5edc0b9f888d35] ~> TaskHandler[id: 497; name: POREC:digest_align_annotate (488); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/9d657ec81551f257f6503b04f07f94] ~> TaskHandler[id: 496; name: POREC:digest_align_annotate (487); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/b5bd8ef9c499a4fdb00ec43f5a9153] ~> TaskHandler[id: 493; name: POREC:digest_align_annotate (484); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/cd0920c2bf9b59131117a7fa94e3d6] .. remaining tasks omitted. Aug-17 12:01:01.716 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 486; name: POREC:digest_align_annotate (477); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/04fabe77f41fce03a31a81b0b6c814] Aug-17 12:01:01.717 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (477)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/04fabe77f41fce03a31a81b0b6c814/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:01:01.718 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:01:01.757 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:01:01.757 [Task submitter] INFO nextflow.Session - [1b/60e7c5] Submitted process > POREC:digest_align_annotate (478) Aug-17 12:02:37.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 487; name: POREC:digest_align_annotate (478); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/60e7c556a69a9f1b32ead7695c196c] Aug-17 12:02:37.561 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (478)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/60e7c556a69a9f1b32ead7695c196c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:02:37.562 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:02:37.568 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:02:37.568 [Task submitter] INFO nextflow.Session - [35/126fbe] Submitted process > POREC:digest_align_annotate (480) Aug-17 12:03:38.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 489; name: POREC:digest_align_annotate (480); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/126fbea60b05ae5e501f384a900adf] Aug-17 12:04:13.497 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 489; name: POREC:digest_align_annotate (480); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/126fbea60b05ae5e501f384a900adf] Aug-17 12:04:13.498 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (480)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/126fbea60b05ae5e501f384a900adf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:04:13.499 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:04:13.505 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:04:13.506 [Task submitter] INFO nextflow.Session - [91/be5482] Submitted process > POREC:digest_align_annotate (482) Aug-17 12:05:15.684 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 490; name: POREC:digest_align_annotate (481); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/f772cb8e63f9d89f5bc24f301a55a2] ~> TaskHandler[id: 492; name: POREC:digest_align_annotate (483); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/dbc75efde6bd8cfa68446a0ba947f6] ~> TaskHandler[id: 494; name: POREC:digest_align_annotate (485); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/d964339474f3ba500662868cadfa7a] ~> TaskHandler[id: 495; name: POREC:digest_align_annotate (486); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/a36e97f84fbe1fbe5edc0b9f888d35] ~> TaskHandler[id: 497; name: POREC:digest_align_annotate (488); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/9d657ec81551f257f6503b04f07f94] ~> TaskHandler[id: 496; name: POREC:digest_align_annotate (487); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/b5bd8ef9c499a4fdb00ec43f5a9153] ~> TaskHandler[id: 493; name: POREC:digest_align_annotate (484); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/cd0920c2bf9b59131117a7fa94e3d6] ~> TaskHandler[id: 499; name: POREC:digest_align_annotate (490); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/228c217fa8c4087ea7233910dabb27] ~> TaskHandler[id: 498; name: POREC:digest_align_annotate (489); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/d51eab78b5b8e496d906bcef91a4a1] ~> TaskHandler[id: 500; name: POREC:digest_align_annotate (491); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/25bf5fe4088d0ccd6c1fc56ccdb8ac] .. remaining tasks omitted. Aug-17 12:05:47.242 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 491; name: POREC:digest_align_annotate (482); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be54822e4d874ccfd21d2ccdcb1ab5] Aug-17 12:05:47.243 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (482)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be54822e4d874ccfd21d2ccdcb1ab5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:05:47.243 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:05:47.334 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:05:47.334 [Task submitter] INFO nextflow.Session - [c4/f772cb] Submitted process > POREC:digest_align_annotate (481) Aug-17 12:07:25.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 490; name: POREC:digest_align_annotate (481); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/f772cb8e63f9d89f5bc24f301a55a2] Aug-17 12:07:25.310 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (481)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/f772cb8e63f9d89f5bc24f301a55a2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:07:25.316 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:07:25.346 [Task submitter] INFO nextflow.Session - [23/dbc75e] Submitted process > POREC:digest_align_annotate (483) Aug-17 12:07:25.347 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:08:38.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 492; name: POREC:digest_align_annotate (483); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/dbc75efde6bd8cfa68446a0ba947f6] Aug-17 12:09:04.492 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 492; name: POREC:digest_align_annotate (483); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/dbc75efde6bd8cfa68446a0ba947f6] Aug-17 12:09:04.492 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (483)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/dbc75efde6bd8cfa68446a0ba947f6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:09:04.493 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:09:04.498 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:09:04.498 [Task submitter] INFO nextflow.Session - [16/d96433] Submitted process > POREC:digest_align_annotate (485) Aug-17 12:10:15.722 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 495; name: POREC:digest_align_annotate (486); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/a36e97f84fbe1fbe5edc0b9f888d35] ~> TaskHandler[id: 497; name: POREC:digest_align_annotate (488); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/9d657ec81551f257f6503b04f07f94] ~> TaskHandler[id: 496; name: POREC:digest_align_annotate (487); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/b5bd8ef9c499a4fdb00ec43f5a9153] ~> TaskHandler[id: 493; name: POREC:digest_align_annotate (484); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/cd0920c2bf9b59131117a7fa94e3d6] ~> TaskHandler[id: 499; name: POREC:digest_align_annotate (490); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/228c217fa8c4087ea7233910dabb27] ~> TaskHandler[id: 498; name: POREC:digest_align_annotate (489); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/d51eab78b5b8e496d906bcef91a4a1] ~> TaskHandler[id: 500; name: POREC:digest_align_annotate (491); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/25bf5fe4088d0ccd6c1fc56ccdb8ac] ~> TaskHandler[id: 501; name: POREC:digest_align_annotate (492); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/f47596559f7feef4d30423ac3435e1] ~> TaskHandler[id: 502; name: POREC:digest_align_annotate (493); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/91f0360fe8f1876f4579b381659846] ~> TaskHandler[id: 503; name: POREC:digest_align_annotate (494); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/17ccfabab89cc84968bf4da01e5565] .. remaining tasks omitted. Aug-17 12:10:42.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 494; name: POREC:digest_align_annotate (485); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/d964339474f3ba500662868cadfa7a] Aug-17 12:10:42.090 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (485)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/d964339474f3ba500662868cadfa7a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:10:42.091 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:10:42.097 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:10:42.097 [Task submitter] INFO nextflow.Session - [09/a36e97] Submitted process > POREC:digest_align_annotate (486) Aug-17 12:12:20.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 495; name: POREC:digest_align_annotate (486); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/a36e97f84fbe1fbe5edc0b9f888d35] Aug-17 12:12:20.313 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (486)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/a36e97f84fbe1fbe5edc0b9f888d35/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:12:20.313 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:12:20.318 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:12:20.318 [Task submitter] INFO nextflow.Session - [eb/9d657e] Submitted process > POREC:digest_align_annotate (488) Aug-17 12:13:38.511 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 497; name: POREC:digest_align_annotate (488); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/9d657ec81551f257f6503b04f07f94] Aug-17 12:13:58.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 497; name: POREC:digest_align_annotate (488); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/9d657ec81551f257f6503b04f07f94] Aug-17 12:13:58.751 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (488)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/9d657ec81551f257f6503b04f07f94/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:13:58.753 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:13:58.769 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:13:58.770 [Task submitter] INFO nextflow.Session - [b5/b5bd8e] Submitted process > POREC:digest_align_annotate (487) Aug-17 12:15:15.996 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 493; name: POREC:digest_align_annotate (484); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/cd0920c2bf9b59131117a7fa94e3d6] ~> TaskHandler[id: 499; name: POREC:digest_align_annotate (490); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/228c217fa8c4087ea7233910dabb27] ~> TaskHandler[id: 498; name: POREC:digest_align_annotate (489); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/d51eab78b5b8e496d906bcef91a4a1] ~> TaskHandler[id: 500; name: POREC:digest_align_annotate (491); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/25bf5fe4088d0ccd6c1fc56ccdb8ac] ~> TaskHandler[id: 501; name: POREC:digest_align_annotate (492); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/f47596559f7feef4d30423ac3435e1] ~> TaskHandler[id: 502; name: POREC:digest_align_annotate (493); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/91f0360fe8f1876f4579b381659846] ~> TaskHandler[id: 503; name: POREC:digest_align_annotate (494); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/17ccfabab89cc84968bf4da01e5565] ~> TaskHandler[id: 504; name: POREC:digest_align_annotate (495); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/aa6251be4249ad46de275dbd96c3d1] ~> TaskHandler[id: 505; name: POREC:digest_align_annotate (496); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6368aea81e11e4509ff34cba68a2c9] ~> TaskHandler[id: 506; name: POREC:digest_align_annotate (497); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/8b7845ff6210d18689c749717b0a2c] .. remaining tasks omitted. Aug-17 12:15:39.500 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 496; name: POREC:digest_align_annotate (487); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/b5bd8ef9c499a4fdb00ec43f5a9153] Aug-17 12:15:39.501 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (487)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/b5bd8ef9c499a4fdb00ec43f5a9153/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:15:39.502 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:15:39.506 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:15:39.507 [Task submitter] INFO nextflow.Session - [f2/cd0920] Submitted process > POREC:digest_align_annotate (484) Aug-17 12:17:34.281 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 493; name: POREC:digest_align_annotate (484); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/cd0920c2bf9b59131117a7fa94e3d6] Aug-17 12:17:34.283 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (484)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/cd0920c2bf9b59131117a7fa94e3d6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:17:34.283 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:17:34.289 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:17:34.289 [Task submitter] INFO nextflow.Session - [4c/228c21] Submitted process > POREC:digest_align_annotate (490) Aug-17 12:18:38.585 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 499; name: POREC:digest_align_annotate (490); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/228c217fa8c4087ea7233910dabb27] Aug-17 12:19:25.251 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 499; name: POREC:digest_align_annotate (490); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/228c217fa8c4087ea7233910dabb27] Aug-17 12:19:25.251 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (490)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/228c217fa8c4087ea7233910dabb27/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:19:25.252 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:19:25.258 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:19:25.259 [Task submitter] INFO nextflow.Session - [2a/d51eab] Submitted process > POREC:digest_align_annotate (489) Aug-17 12:20:16.427 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 500; name: POREC:digest_align_annotate (491); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/25bf5fe4088d0ccd6c1fc56ccdb8ac] ~> TaskHandler[id: 501; name: POREC:digest_align_annotate (492); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/f47596559f7feef4d30423ac3435e1] ~> TaskHandler[id: 502; name: POREC:digest_align_annotate (493); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/91f0360fe8f1876f4579b381659846] ~> TaskHandler[id: 503; name: POREC:digest_align_annotate (494); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/17ccfabab89cc84968bf4da01e5565] ~> TaskHandler[id: 504; name: POREC:digest_align_annotate (495); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/aa6251be4249ad46de275dbd96c3d1] ~> TaskHandler[id: 505; name: POREC:digest_align_annotate (496); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6368aea81e11e4509ff34cba68a2c9] ~> TaskHandler[id: 506; name: POREC:digest_align_annotate (497); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/8b7845ff6210d18689c749717b0a2c] ~> TaskHandler[id: 509; name: POREC:digest_align_annotate (500); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/afa08587361bb8c5f16c2e29975102] ~> TaskHandler[id: 511; name: POREC:digest_align_annotate (502); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/e4dfa02927b07b5c119df22c8b8d4e] ~> TaskHandler[id: 510; name: POREC:digest_align_annotate (501); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/5182506619a497ff6198f8992cc5ca] .. remaining tasks omitted. Aug-17 12:21:09.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 498; name: POREC:digest_align_annotate (489); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/d51eab78b5b8e496d906bcef91a4a1] Aug-17 12:21:09.535 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (489)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/d51eab78b5b8e496d906bcef91a4a1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:21:09.540 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:21:09.575 [Task submitter] INFO nextflow.Session - [e1/25bf5f] Submitted process > POREC:digest_align_annotate (491) Aug-17 12:21:09.575 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:22:58.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 500; name: POREC:digest_align_annotate (491); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/25bf5fe4088d0ccd6c1fc56ccdb8ac] Aug-17 12:22:58.612 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (491)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/25bf5fe4088d0ccd6c1fc56ccdb8ac/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:22:58.612 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:22:58.617 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:22:58.617 [Task submitter] INFO nextflow.Session - [08/f47596] Submitted process > POREC:digest_align_annotate (492) Aug-17 12:23:38.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 501; name: POREC:digest_align_annotate (492); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/f47596559f7feef4d30423ac3435e1] Aug-17 12:24:45.697 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 501; name: POREC:digest_align_annotate (492); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/f47596559f7feef4d30423ac3435e1] Aug-17 12:24:45.698 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (492)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/f47596559f7feef4d30423ac3435e1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:24:45.699 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:24:45.706 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:24:45.706 [Task submitter] INFO nextflow.Session - [40/91f036] Submitted process > POREC:digest_align_annotate (493) Aug-17 12:25:16.811 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 503; name: POREC:digest_align_annotate (494); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/17ccfabab89cc84968bf4da01e5565] ~> TaskHandler[id: 504; name: POREC:digest_align_annotate (495); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/aa6251be4249ad46de275dbd96c3d1] ~> TaskHandler[id: 505; name: POREC:digest_align_annotate (496); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6368aea81e11e4509ff34cba68a2c9] ~> TaskHandler[id: 506; name: POREC:digest_align_annotate (497); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/8b7845ff6210d18689c749717b0a2c] ~> TaskHandler[id: 509; name: POREC:digest_align_annotate (500); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/afa08587361bb8c5f16c2e29975102] ~> TaskHandler[id: 511; name: POREC:digest_align_annotate (502); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/e4dfa02927b07b5c119df22c8b8d4e] ~> TaskHandler[id: 510; name: POREC:digest_align_annotate (501); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/5182506619a497ff6198f8992cc5ca] ~> TaskHandler[id: 513; name: POREC:digest_align_annotate (504); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/5d9fb9fdb75833846783b9e0a3ba0a] ~> TaskHandler[id: 512; name: POREC:digest_align_annotate (503); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/cb4ac87976f90842dfcf275280775f] ~> TaskHandler[id: 514; name: POREC:digest_align_annotate (505); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/f10582f8986267c5542782fb22f66f] .. remaining tasks omitted. Aug-17 12:26:39.238 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 502; name: POREC:digest_align_annotate (493); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/91f0360fe8f1876f4579b381659846] Aug-17 12:26:39.239 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (493)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/91f0360fe8f1876f4579b381659846/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:26:39.239 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:26:39.244 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:26:39.245 [Task submitter] INFO nextflow.Session - [eb/17ccfa] Submitted process > POREC:digest_align_annotate (494) Aug-17 12:28:25.249 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 503; name: POREC:digest_align_annotate (494); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/17ccfabab89cc84968bf4da01e5565] Aug-17 12:28:25.250 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (494)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/17ccfabab89cc84968bf4da01e5565/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:28:25.250 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:28:25.256 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:28:25.256 [Task submitter] INFO nextflow.Session - [d8/aa6251] Submitted process > POREC:digest_align_annotate (495) Aug-17 12:28:38.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 504; name: POREC:digest_align_annotate (495); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/aa6251be4249ad46de275dbd96c3d1] Aug-17 12:30:13.098 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 504; name: POREC:digest_align_annotate (495); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/aa6251be4249ad46de275dbd96c3d1] Aug-17 12:30:13.099 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (495)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/aa6251be4249ad46de275dbd96c3d1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:30:13.125 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:30:13.125 [Task submitter] INFO nextflow.Session - [ae/6368ae] Submitted process > POREC:digest_align_annotate (496) Aug-17 12:30:13.126 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:30:17.144 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 506; name: POREC:digest_align_annotate (497); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/8b7845ff6210d18689c749717b0a2c] ~> TaskHandler[id: 509; name: POREC:digest_align_annotate (500); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/afa08587361bb8c5f16c2e29975102] ~> TaskHandler[id: 511; name: POREC:digest_align_annotate (502); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/e4dfa02927b07b5c119df22c8b8d4e] ~> TaskHandler[id: 510; name: POREC:digest_align_annotate (501); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/5182506619a497ff6198f8992cc5ca] ~> TaskHandler[id: 513; name: POREC:digest_align_annotate (504); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/5d9fb9fdb75833846783b9e0a3ba0a] ~> TaskHandler[id: 512; name: POREC:digest_align_annotate (503); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/cb4ac87976f90842dfcf275280775f] ~> TaskHandler[id: 514; name: POREC:digest_align_annotate (505); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/f10582f8986267c5542782fb22f66f] ~> TaskHandler[id: 515; name: POREC:digest_align_annotate (506); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4d4a95d7a74e2758515009cbbe17bd] ~> TaskHandler[id: 516; name: POREC:digest_align_annotate (507); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/5cb59f6fc7e3c74fcd492447f2f870] ~> TaskHandler[id: 518; name: POREC:digest_align_annotate (509); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/f6e8567c9a74c6a1de08bf4f834fec] .. remaining tasks omitted. Aug-17 12:32:00.454 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 505; name: POREC:digest_align_annotate (496); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6368aea81e11e4509ff34cba68a2c9] Aug-17 12:32:00.454 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (496)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6368aea81e11e4509ff34cba68a2c9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:32:00.455 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:32:00.462 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:32:00.462 [Task submitter] INFO nextflow.Session - [dc/8b7845] Submitted process > POREC:digest_align_annotate (497) Aug-17 12:33:38.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 506; name: POREC:digest_align_annotate (497); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/8b7845ff6210d18689c749717b0a2c] Aug-17 12:33:49.528 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 506; name: POREC:digest_align_annotate (497); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/8b7845ff6210d18689c749717b0a2c] Aug-17 12:33:49.529 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (497)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/8b7845ff6210d18689c749717b0a2c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:33:49.530 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:33:49.535 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:33:49.535 [Task submitter] INFO nextflow.Session - [5d/afa085] Submitted process > POREC:digest_align_annotate (500) Aug-17 12:35:17.796 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 511; name: POREC:digest_align_annotate (502); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/e4dfa02927b07b5c119df22c8b8d4e] ~> TaskHandler[id: 510; name: POREC:digest_align_annotate (501); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/5182506619a497ff6198f8992cc5ca] ~> TaskHandler[id: 513; name: POREC:digest_align_annotate (504); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/5d9fb9fdb75833846783b9e0a3ba0a] ~> TaskHandler[id: 512; name: POREC:digest_align_annotate (503); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/cb4ac87976f90842dfcf275280775f] ~> TaskHandler[id: 514; name: POREC:digest_align_annotate (505); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/f10582f8986267c5542782fb22f66f] ~> TaskHandler[id: 515; name: POREC:digest_align_annotate (506); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4d4a95d7a74e2758515009cbbe17bd] ~> TaskHandler[id: 516; name: POREC:digest_align_annotate (507); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/5cb59f6fc7e3c74fcd492447f2f870] ~> TaskHandler[id: 518; name: POREC:digest_align_annotate (509); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/f6e8567c9a74c6a1de08bf4f834fec] ~> TaskHandler[id: 517; name: POREC:digest_align_annotate (508); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/1614515cef27af988fed48b2cb71cc] ~> TaskHandler[id: 520; name: POREC:digest_align_annotate (511); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/5ea83c2eb12627b637f9c450b6ae7a] .. remaining tasks omitted. Aug-17 12:35:26.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 509; name: POREC:digest_align_annotate (500); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/afa08587361bb8c5f16c2e29975102] Aug-17 12:35:26.548 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (500)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/afa08587361bb8c5f16c2e29975102/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:35:26.549 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:35:26.555 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:35:26.565 [Task submitter] INFO nextflow.Session - [7f/e4dfa0] Submitted process > POREC:digest_align_annotate (502) Aug-17 12:37:00.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 511; name: POREC:digest_align_annotate (502); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/e4dfa02927b07b5c119df22c8b8d4e] Aug-17 12:37:00.562 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (502)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/e4dfa02927b07b5c119df22c8b8d4e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:37:00.563 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:37:00.569 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:37:00.569 [Task submitter] INFO nextflow.Session - [5c/518250] Submitted process > POREC:digest_align_annotate (501) Aug-17 12:38:38.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 510; name: POREC:digest_align_annotate (501); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/5182506619a497ff6198f8992cc5ca] Aug-17 12:38:40.451 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 510; name: POREC:digest_align_annotate (501); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/5182506619a497ff6198f8992cc5ca] Aug-17 12:38:40.452 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (501)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/5182506619a497ff6198f8992cc5ca/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:38:40.452 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:38:40.458 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:38:40.458 [Task submitter] INFO nextflow.Session - [ae/5d9fb9] Submitted process > POREC:digest_align_annotate (504) Aug-17 12:40:16.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 513; name: POREC:digest_align_annotate (504); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/5d9fb9fdb75833846783b9e0a3ba0a] Aug-17 12:40:16.482 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (504)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/5d9fb9fdb75833846783b9e0a3ba0a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:40:16.483 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:40:16.489 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:40:16.490 [Task submitter] INFO nextflow.Session - [fa/cb4ac8] Submitted process > POREC:digest_align_annotate (503) Aug-17 12:40:18.502 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 514; name: POREC:digest_align_annotate (505); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/f10582f8986267c5542782fb22f66f] ~> TaskHandler[id: 515; name: POREC:digest_align_annotate (506); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4d4a95d7a74e2758515009cbbe17bd] ~> TaskHandler[id: 516; name: POREC:digest_align_annotate (507); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/5cb59f6fc7e3c74fcd492447f2f870] ~> TaskHandler[id: 518; name: POREC:digest_align_annotate (509); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/f6e8567c9a74c6a1de08bf4f834fec] ~> TaskHandler[id: 517; name: POREC:digest_align_annotate (508); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/1614515cef27af988fed48b2cb71cc] ~> TaskHandler[id: 520; name: POREC:digest_align_annotate (511); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/5ea83c2eb12627b637f9c450b6ae7a] ~> TaskHandler[id: 519; name: POREC:digest_align_annotate (510); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/aa52da8a1f31298620afa0bc320b99] ~> TaskHandler[id: 521; name: POREC:digest_align_annotate (512); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/26cbdf4619abba6517d6a9139b3877] ~> TaskHandler[id: 522; name: POREC:digest_align_annotate (513); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/f19c6f30edc3102128e7f74aac319f] ~> TaskHandler[id: 523; name: POREC:digest_align_annotate (514); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/0ea2a0846df21134c8e61e721f38a1] .. remaining tasks omitted. Aug-17 12:41:56.875 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 512; name: POREC:digest_align_annotate (503); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/cb4ac87976f90842dfcf275280775f] Aug-17 12:41:56.875 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (503)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/cb4ac87976f90842dfcf275280775f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:41:56.876 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:41:56.882 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:41:56.882 [Task submitter] INFO nextflow.Session - [43/f10582] Submitted process > POREC:digest_align_annotate (505) Aug-17 12:43:38.705 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 514; name: POREC:digest_align_annotate (505); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/f10582f8986267c5542782fb22f66f] Aug-17 12:43:42.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 514; name: POREC:digest_align_annotate (505); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/f10582f8986267c5542782fb22f66f] Aug-17 12:43:42.851 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (505)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/f10582f8986267c5542782fb22f66f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:43:42.852 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:43:42.856 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:43:42.865 [Task submitter] INFO nextflow.Session - [b5/4d4a95] Submitted process > POREC:digest_align_annotate (506) Aug-17 12:45:19.172 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 516; name: POREC:digest_align_annotate (507); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/5cb59f6fc7e3c74fcd492447f2f870] ~> TaskHandler[id: 518; name: POREC:digest_align_annotate (509); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/f6e8567c9a74c6a1de08bf4f834fec] ~> TaskHandler[id: 517; name: POREC:digest_align_annotate (508); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/1614515cef27af988fed48b2cb71cc] ~> TaskHandler[id: 520; name: POREC:digest_align_annotate (511); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/5ea83c2eb12627b637f9c450b6ae7a] ~> TaskHandler[id: 519; name: POREC:digest_align_annotate (510); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/aa52da8a1f31298620afa0bc320b99] ~> TaskHandler[id: 521; name: POREC:digest_align_annotate (512); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/26cbdf4619abba6517d6a9139b3877] ~> TaskHandler[id: 522; name: POREC:digest_align_annotate (513); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/f19c6f30edc3102128e7f74aac319f] ~> TaskHandler[id: 523; name: POREC:digest_align_annotate (514); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/0ea2a0846df21134c8e61e721f38a1] ~> TaskHandler[id: 524; name: POREC:digest_align_annotate (515); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9c2d12e3ea5bf2c410e457912f466a] ~> TaskHandler[id: 525; name: POREC:digest_align_annotate (516); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/632fa1a685d7f5e2b4769a214f70f5] .. remaining tasks omitted. Aug-17 12:45:19.261 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 515; name: POREC:digest_align_annotate (506); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4d4a95d7a74e2758515009cbbe17bd] Aug-17 12:45:19.262 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (506)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4d4a95d7a74e2758515009cbbe17bd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:45:19.262 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:45:19.275 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:45:19.275 [Task submitter] INFO nextflow.Session - [50/5cb59f] Submitted process > POREC:digest_align_annotate (507) Aug-17 12:46:53.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 516; name: POREC:digest_align_annotate (507); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/5cb59f6fc7e3c74fcd492447f2f870] Aug-17 12:46:53.506 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (507)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/5cb59f6fc7e3c74fcd492447f2f870/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:46:53.518 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:46:53.532 [Task submitter] INFO nextflow.Session - [5c/f6e856] Submitted process > POREC:digest_align_annotate (509) Aug-17 12:46:53.533 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:48:38.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 518; name: POREC:digest_align_annotate (509); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/f6e8567c9a74c6a1de08bf4f834fec] Aug-17 12:48:44.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 518; name: POREC:digest_align_annotate (509); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/f6e8567c9a74c6a1de08bf4f834fec] Aug-17 12:48:44.828 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (509)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/f6e8567c9a74c6a1de08bf4f834fec/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:48:44.829 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:48:44.847 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:48:44.848 [Task submitter] INFO nextflow.Session - [22/161451] Submitted process > POREC:digest_align_annotate (508) Aug-17 12:50:20.136 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 520; name: POREC:digest_align_annotate (511); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/5ea83c2eb12627b637f9c450b6ae7a] ~> TaskHandler[id: 519; name: POREC:digest_align_annotate (510); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/aa52da8a1f31298620afa0bc320b99] ~> TaskHandler[id: 521; name: POREC:digest_align_annotate (512); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/26cbdf4619abba6517d6a9139b3877] ~> TaskHandler[id: 522; name: POREC:digest_align_annotate (513); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/f19c6f30edc3102128e7f74aac319f] ~> TaskHandler[id: 523; name: POREC:digest_align_annotate (514); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/0ea2a0846df21134c8e61e721f38a1] ~> TaskHandler[id: 524; name: POREC:digest_align_annotate (515); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9c2d12e3ea5bf2c410e457912f466a] ~> TaskHandler[id: 525; name: POREC:digest_align_annotate (516); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/632fa1a685d7f5e2b4769a214f70f5] ~> TaskHandler[id: 555; name: POREC:digest_align_annotate (546); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/29774ab9f967b378612e078cf8c51c] ~> TaskHandler[id: 527; name: POREC:digest_align_annotate (518); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/6943c6e9dfa92926e1b10ee4da71c4] ~> TaskHandler[id: 526; name: POREC:digest_align_annotate (517); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/11a5eff72235386ce77b3923a84121] .. remaining tasks omitted. Aug-17 12:50:26.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 517; name: POREC:digest_align_annotate (508); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/1614515cef27af988fed48b2cb71cc] Aug-17 12:50:26.272 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (508)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/1614515cef27af988fed48b2cb71cc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:50:26.274 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:50:26.278 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:50:26.278 [Task submitter] INFO nextflow.Session - [45/5ea83c] Submitted process > POREC:digest_align_annotate (511) Aug-17 12:52:04.145 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 520; name: POREC:digest_align_annotate (511); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/5ea83c2eb12627b637f9c450b6ae7a] Aug-17 12:52:04.146 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (511)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/5ea83c2eb12627b637f9c450b6ae7a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:52:04.147 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:52:04.151 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:52:04.151 [Task submitter] INFO nextflow.Session - [5b/aa52da] Submitted process > POREC:digest_align_annotate (510) Aug-17 12:53:38.763 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 519; name: POREC:digest_align_annotate (510); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/aa52da8a1f31298620afa0bc320b99] Aug-17 12:53:43.643 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 519; name: POREC:digest_align_annotate (510); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/aa52da8a1f31298620afa0bc320b99] Aug-17 12:53:43.644 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (510)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/aa52da8a1f31298620afa0bc320b99/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:53:43.644 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:53:43.649 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:53:43.649 [Task submitter] INFO nextflow.Session - [ac/26cbdf] Submitted process > POREC:digest_align_annotate (512) Aug-17 12:55:20.997 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 522; name: POREC:digest_align_annotate (513); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/f19c6f30edc3102128e7f74aac319f] ~> TaskHandler[id: 523; name: POREC:digest_align_annotate (514); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/0ea2a0846df21134c8e61e721f38a1] ~> TaskHandler[id: 524; name: POREC:digest_align_annotate (515); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9c2d12e3ea5bf2c410e457912f466a] ~> TaskHandler[id: 525; name: POREC:digest_align_annotate (516); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/632fa1a685d7f5e2b4769a214f70f5] ~> TaskHandler[id: 555; name: POREC:digest_align_annotate (546); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/29774ab9f967b378612e078cf8c51c] ~> TaskHandler[id: 527; name: POREC:digest_align_annotate (518); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/6943c6e9dfa92926e1b10ee4da71c4] ~> TaskHandler[id: 526; name: POREC:digest_align_annotate (517); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/11a5eff72235386ce77b3923a84121] ~> TaskHandler[id: 528; name: POREC:digest_align_annotate (519); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3f508b95d26d61680013636d0dffe0] ~> TaskHandler[id: 529; name: POREC:digest_align_annotate (520); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/152219368c21cd7b1eb97126110b79] ~> TaskHandler[id: 530; name: POREC:digest_align_annotate (521); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/648eb7500d4b0378c0fd8655bfdd61] .. remaining tasks omitted. Aug-17 12:55:22.434 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 521; name: POREC:digest_align_annotate (512); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/26cbdf4619abba6517d6a9139b3877] Aug-17 12:55:22.436 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (512)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/26cbdf4619abba6517d6a9139b3877/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:55:22.437 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:55:22.444 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:55:22.444 [Task submitter] INFO nextflow.Session - [63/f19c6f] Submitted process > POREC:digest_align_annotate (513) Aug-17 12:56:59.835 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 522; name: POREC:digest_align_annotate (513); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/f19c6f30edc3102128e7f74aac319f] Aug-17 12:56:59.865 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (513)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/f19c6f30edc3102128e7f74aac319f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:56:59.866 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:56:59.870 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:56:59.870 [Task submitter] INFO nextflow.Session - [4c/0ea2a0] Submitted process > POREC:digest_align_annotate (514) Aug-17 12:58:38.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 523; name: POREC:digest_align_annotate (514); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/0ea2a0846df21134c8e61e721f38a1] Aug-17 12:58:48.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 523; name: POREC:digest_align_annotate (514); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/0ea2a0846df21134c8e61e721f38a1] Aug-17 12:58:48.869 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (514)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/0ea2a0846df21134c8e61e721f38a1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 12:58:48.869 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 12:58:48.873 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 12:58:48.873 [Task submitter] INFO nextflow.Session - [8f/9c2d12] Submitted process > POREC:digest_align_annotate (515) Aug-17 13:00:21.190 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 525; name: POREC:digest_align_annotate (516); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/632fa1a685d7f5e2b4769a214f70f5] ~> TaskHandler[id: 555; name: POREC:digest_align_annotate (546); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/29774ab9f967b378612e078cf8c51c] ~> TaskHandler[id: 527; name: POREC:digest_align_annotate (518); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/6943c6e9dfa92926e1b10ee4da71c4] ~> TaskHandler[id: 526; name: POREC:digest_align_annotate (517); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/11a5eff72235386ce77b3923a84121] ~> TaskHandler[id: 528; name: POREC:digest_align_annotate (519); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3f508b95d26d61680013636d0dffe0] ~> TaskHandler[id: 529; name: POREC:digest_align_annotate (520); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/152219368c21cd7b1eb97126110b79] ~> TaskHandler[id: 530; name: POREC:digest_align_annotate (521); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/648eb7500d4b0378c0fd8655bfdd61] ~> TaskHandler[id: 531; name: POREC:digest_align_annotate (522); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ecfd17a23f660a49e321902dde66ad] ~> TaskHandler[id: 532; name: POREC:digest_align_annotate (523); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/019080e929bd1432e03a1215a91671] ~> TaskHandler[id: 533; name: POREC:digest_align_annotate (524); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/a3cef49c43622d452bdd8931641933] .. remaining tasks omitted. Aug-17 13:00:33.712 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 524; name: POREC:digest_align_annotate (515); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9c2d12e3ea5bf2c410e457912f466a] Aug-17 13:00:33.713 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (515)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9c2d12e3ea5bf2c410e457912f466a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:00:33.714 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:00:33.718 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:00:33.751 [Task submitter] INFO nextflow.Session - [45/632fa1] Submitted process > POREC:digest_align_annotate (516) Aug-17 13:02:23.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 525; name: POREC:digest_align_annotate (516); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/632fa1a685d7f5e2b4769a214f70f5] Aug-17 13:02:23.537 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (516)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/632fa1a685d7f5e2b4769a214f70f5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:02:23.538 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:02:23.545 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:02:23.545 [Task submitter] INFO nextflow.Session - [c3/29774a] Submitted process > POREC:digest_align_annotate (546) Aug-17 13:03:38.829 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 555; name: POREC:digest_align_annotate (546); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/29774ab9f967b378612e078cf8c51c] Aug-17 13:04:07.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 555; name: POREC:digest_align_annotate (546); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/29774ab9f967b378612e078cf8c51c] Aug-17 13:04:07.843 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (546)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/29774ab9f967b378612e078cf8c51c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:04:07.844 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:04:07.854 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:04:07.855 [Task submitter] INFO nextflow.Session - [97/6943c6] Submitted process > POREC:digest_align_annotate (518) Aug-17 13:05:22.103 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 526; name: POREC:digest_align_annotate (517); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/11a5eff72235386ce77b3923a84121] ~> TaskHandler[id: 528; name: POREC:digest_align_annotate (519); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3f508b95d26d61680013636d0dffe0] ~> TaskHandler[id: 529; name: POREC:digest_align_annotate (520); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/152219368c21cd7b1eb97126110b79] ~> TaskHandler[id: 530; name: POREC:digest_align_annotate (521); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/648eb7500d4b0378c0fd8655bfdd61] ~> TaskHandler[id: 531; name: POREC:digest_align_annotate (522); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ecfd17a23f660a49e321902dde66ad] ~> TaskHandler[id: 532; name: POREC:digest_align_annotate (523); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/019080e929bd1432e03a1215a91671] ~> TaskHandler[id: 533; name: POREC:digest_align_annotate (524); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/a3cef49c43622d452bdd8931641933] ~> TaskHandler[id: 534; name: POREC:digest_align_annotate (525); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/670dfe8e5de8f613fc6143d9f48e4b] ~> TaskHandler[id: 535; name: POREC:digest_align_annotate (526); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/bb992f387670a28c6474427185fed1] ~> TaskHandler[id: 536; name: POREC:digest_align_annotate (527); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/1bcfb68bc4015f03748daf658c3fe2] .. remaining tasks omitted. Aug-17 13:05:55.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 527; name: POREC:digest_align_annotate (518); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/6943c6e9dfa92926e1b10ee4da71c4] Aug-17 13:05:55.215 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (518)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/6943c6e9dfa92926e1b10ee4da71c4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:05:55.216 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:05:55.221 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:05:55.221 [Task submitter] INFO nextflow.Session - [f3/11a5ef] Submitted process > POREC:digest_align_annotate (517) Aug-17 13:07:32.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 526; name: POREC:digest_align_annotate (517); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/11a5eff72235386ce77b3923a84121] Aug-17 13:07:32.678 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (517)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/11a5eff72235386ce77b3923a84121/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:07:32.679 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:07:32.685 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:07:32.685 [Task submitter] INFO nextflow.Session - [2d/3f508b] Submitted process > POREC:digest_align_annotate (519) Aug-17 13:08:38.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 528; name: POREC:digest_align_annotate (519); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3f508b95d26d61680013636d0dffe0] Aug-17 13:09:21.664 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 528; name: POREC:digest_align_annotate (519); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3f508b95d26d61680013636d0dffe0] Aug-17 13:09:21.665 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (519)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3f508b95d26d61680013636d0dffe0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:09:21.666 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:09:21.669 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:09:21.691 [Task submitter] INFO nextflow.Session - [6e/152219] Submitted process > POREC:digest_align_annotate (520) Aug-17 13:10:22.880 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 530; name: POREC:digest_align_annotate (521); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/648eb7500d4b0378c0fd8655bfdd61] ~> TaskHandler[id: 531; name: POREC:digest_align_annotate (522); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ecfd17a23f660a49e321902dde66ad] ~> TaskHandler[id: 532; name: POREC:digest_align_annotate (523); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/019080e929bd1432e03a1215a91671] ~> TaskHandler[id: 533; name: POREC:digest_align_annotate (524); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/a3cef49c43622d452bdd8931641933] ~> TaskHandler[id: 534; name: POREC:digest_align_annotate (525); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/670dfe8e5de8f613fc6143d9f48e4b] ~> TaskHandler[id: 535; name: POREC:digest_align_annotate (526); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/bb992f387670a28c6474427185fed1] ~> TaskHandler[id: 536; name: POREC:digest_align_annotate (527); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/1bcfb68bc4015f03748daf658c3fe2] ~> TaskHandler[id: 537; name: POREC:digest_align_annotate (528); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d0fd5b2702d04dadd9b423b983d3cf] ~> TaskHandler[id: 538; name: POREC:digest_align_annotate (529); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/68ab44504b2472787a5d057f7ae4f9] ~> TaskHandler[id: 539; name: POREC:digest_align_annotate (530); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/6480e2928758249d2c8f707f337a34] .. remaining tasks omitted. Aug-17 13:11:06.406 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 529; name: POREC:digest_align_annotate (520); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/152219368c21cd7b1eb97126110b79] Aug-17 13:11:06.408 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (520)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/152219368c21cd7b1eb97126110b79/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:11:06.409 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:11:06.414 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:11:06.414 [Task submitter] INFO nextflow.Session - [4e/648eb7] Submitted process > POREC:digest_align_annotate (521) Aug-17 13:12:54.219 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 530; name: POREC:digest_align_annotate (521); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/648eb7500d4b0378c0fd8655bfdd61] Aug-17 13:12:54.220 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (521)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/648eb7500d4b0378c0fd8655bfdd61/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:12:54.226 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:12:54.238 [Task submitter] INFO nextflow.Session - [96/ecfd17] Submitted process > POREC:digest_align_annotate (522) Aug-17 13:12:54.239 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:13:38.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 531; name: POREC:digest_align_annotate (522); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ecfd17a23f660a49e321902dde66ad] Aug-17 13:14:35.291 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 531; name: POREC:digest_align_annotate (522); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ecfd17a23f660a49e321902dde66ad] Aug-17 13:14:35.292 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (522)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ecfd17a23f660a49e321902dde66ad/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:14:35.292 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:14:35.296 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:14:35.296 [Task submitter] INFO nextflow.Session - [16/019080] Submitted process > POREC:digest_align_annotate (523) Aug-17 13:15:23.452 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 533; name: POREC:digest_align_annotate (524); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/a3cef49c43622d452bdd8931641933] ~> TaskHandler[id: 534; name: POREC:digest_align_annotate (525); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/670dfe8e5de8f613fc6143d9f48e4b] ~> TaskHandler[id: 535; name: POREC:digest_align_annotate (526); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/bb992f387670a28c6474427185fed1] ~> TaskHandler[id: 536; name: POREC:digest_align_annotate (527); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/1bcfb68bc4015f03748daf658c3fe2] ~> TaskHandler[id: 537; name: POREC:digest_align_annotate (528); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d0fd5b2702d04dadd9b423b983d3cf] ~> TaskHandler[id: 538; name: POREC:digest_align_annotate (529); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/68ab44504b2472787a5d057f7ae4f9] ~> TaskHandler[id: 539; name: POREC:digest_align_annotate (530); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/6480e2928758249d2c8f707f337a34] ~> TaskHandler[id: 540; name: POREC:digest_align_annotate (531); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/9d3aa7257f1ae47b2d4fe1ed3d88fb] ~> TaskHandler[id: 542; name: POREC:digest_align_annotate (533); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/522c6377c2ff9f6527d3af29a1b305] ~> TaskHandler[id: 543; name: POREC:digest_align_annotate (534); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/b8d0598c454ab320063f65a58c6022] .. remaining tasks omitted. Aug-17 13:16:12.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 532; name: POREC:digest_align_annotate (523); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/019080e929bd1432e03a1215a91671] Aug-17 13:16:12.870 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (523)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/019080e929bd1432e03a1215a91671/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:16:12.871 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:16:12.877 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:16:12.877 [Task submitter] INFO nextflow.Session - [6d/a3cef4] Submitted process > POREC:digest_align_annotate (524) Aug-17 13:17:50.094 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 533; name: POREC:digest_align_annotate (524); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/a3cef49c43622d452bdd8931641933] Aug-17 13:17:50.094 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (524)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/a3cef49c43622d452bdd8931641933/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:17:50.095 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:17:50.099 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:17:50.099 [Task submitter] INFO nextflow.Session - [16/670dfe] Submitted process > POREC:digest_align_annotate (525) Aug-17 13:18:38.943 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 534; name: POREC:digest_align_annotate (525); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/670dfe8e5de8f613fc6143d9f48e4b] Aug-17 13:19:24.999 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 534; name: POREC:digest_align_annotate (525); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/670dfe8e5de8f613fc6143d9f48e4b] Aug-17 13:19:25.000 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (525)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/670dfe8e5de8f613fc6143d9f48e4b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:19:25.000 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:19:25.027 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:19:25.027 [Task submitter] INFO nextflow.Session - [36/bb992f] Submitted process > POREC:digest_align_annotate (526) Aug-17 13:20:24.197 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 536; name: POREC:digest_align_annotate (527); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/1bcfb68bc4015f03748daf658c3fe2] ~> TaskHandler[id: 537; name: POREC:digest_align_annotate (528); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d0fd5b2702d04dadd9b423b983d3cf] ~> TaskHandler[id: 538; name: POREC:digest_align_annotate (529); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/68ab44504b2472787a5d057f7ae4f9] ~> TaskHandler[id: 539; name: POREC:digest_align_annotate (530); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/6480e2928758249d2c8f707f337a34] ~> TaskHandler[id: 540; name: POREC:digest_align_annotate (531); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/9d3aa7257f1ae47b2d4fe1ed3d88fb] ~> TaskHandler[id: 542; name: POREC:digest_align_annotate (533); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/522c6377c2ff9f6527d3af29a1b305] ~> TaskHandler[id: 543; name: POREC:digest_align_annotate (534); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/b8d0598c454ab320063f65a58c6022] ~> TaskHandler[id: 541; name: POREC:digest_align_annotate (532); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/967aa76e968c502c56c8243f01a366] ~> TaskHandler[id: 544; name: POREC:digest_align_annotate (535); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/019e1115ad7ab67d6cde65a0012776] ~> TaskHandler[id: 574; name: POREC:digest_align_annotate (565); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/908864617d175f962a0e017b09b4e9] .. remaining tasks omitted. Aug-17 13:21:05.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 535; name: POREC:digest_align_annotate (526); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/bb992f387670a28c6474427185fed1] Aug-17 13:21:05.403 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (526)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/bb992f387670a28c6474427185fed1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:21:05.403 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:21:05.409 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:21:05.409 [Task submitter] INFO nextflow.Session - [73/1bcfb6] Submitted process > POREC:digest_align_annotate (527) Aug-17 13:22:42.897 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 536; name: POREC:digest_align_annotate (527); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/1bcfb68bc4015f03748daf658c3fe2] Aug-17 13:22:42.899 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (527)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/1bcfb68bc4015f03748daf658c3fe2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:22:42.900 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:22:42.910 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:22:42.910 [Task submitter] INFO nextflow.Session - [67/d0fd5b] Submitted process > POREC:digest_align_annotate (528) Aug-17 13:23:38.971 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 537; name: POREC:digest_align_annotate (528); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d0fd5b2702d04dadd9b423b983d3cf] Aug-17 13:24:17.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 537; name: POREC:digest_align_annotate (528); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d0fd5b2702d04dadd9b423b983d3cf] Aug-17 13:24:17.210 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (528)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d0fd5b2702d04dadd9b423b983d3cf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:24:17.212 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:24:17.216 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:24:17.216 [Task submitter] INFO nextflow.Session - [a3/68ab44] Submitted process > POREC:digest_align_annotate (529) Aug-17 13:25:24.408 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 539; name: POREC:digest_align_annotate (530); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/6480e2928758249d2c8f707f337a34] ~> TaskHandler[id: 540; name: POREC:digest_align_annotate (531); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/9d3aa7257f1ae47b2d4fe1ed3d88fb] ~> TaskHandler[id: 542; name: POREC:digest_align_annotate (533); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/522c6377c2ff9f6527d3af29a1b305] ~> TaskHandler[id: 543; name: POREC:digest_align_annotate (534); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/b8d0598c454ab320063f65a58c6022] ~> TaskHandler[id: 541; name: POREC:digest_align_annotate (532); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/967aa76e968c502c56c8243f01a366] ~> TaskHandler[id: 544; name: POREC:digest_align_annotate (535); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/019e1115ad7ab67d6cde65a0012776] ~> TaskHandler[id: 574; name: POREC:digest_align_annotate (565); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/908864617d175f962a0e017b09b4e9] ~> TaskHandler[id: 545; name: POREC:digest_align_annotate (536); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/63cab1a95b8252c22f3dcc33d68e4a] ~> TaskHandler[id: 546; name: POREC:digest_align_annotate (537); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/a208dee6e584ef88cf52a1b011f31c] ~> TaskHandler[id: 547; name: POREC:digest_align_annotate (538); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/fe27350e8597dd4902391ebf57a489] .. remaining tasks omitted. Aug-17 13:25:49.776 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 538; name: POREC:digest_align_annotate (529); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/68ab44504b2472787a5d057f7ae4f9] Aug-17 13:25:49.777 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (529)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/68ab44504b2472787a5d057f7ae4f9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:25:49.783 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:25:49.792 [Task submitter] INFO nextflow.Session - [31/6480e2] Submitted process > POREC:digest_align_annotate (530) Aug-17 13:25:49.792 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:27:29.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 539; name: POREC:digest_align_annotate (530); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/6480e2928758249d2c8f707f337a34] Aug-17 13:27:29.627 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (530)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/6480e2928758249d2c8f707f337a34/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:27:29.628 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:27:29.632 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:27:29.632 [Task submitter] INFO nextflow.Session - [ce/9d3aa7] Submitted process > POREC:digest_align_annotate (531) Aug-17 13:28:39.014 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 540; name: POREC:digest_align_annotate (531); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/9d3aa7257f1ae47b2d4fe1ed3d88fb] Aug-17 13:29:11.538 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 540; name: POREC:digest_align_annotate (531); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/9d3aa7257f1ae47b2d4fe1ed3d88fb] Aug-17 13:29:11.539 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (531)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/9d3aa7257f1ae47b2d4fe1ed3d88fb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:29:11.540 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:29:11.544 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:29:11.545 [Task submitter] INFO nextflow.Session - [24/522c63] Submitted process > POREC:digest_align_annotate (533) Aug-17 13:30:24.770 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 543; name: POREC:digest_align_annotate (534); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/b8d0598c454ab320063f65a58c6022] ~> TaskHandler[id: 541; name: POREC:digest_align_annotate (532); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/967aa76e968c502c56c8243f01a366] ~> TaskHandler[id: 544; name: POREC:digest_align_annotate (535); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/019e1115ad7ab67d6cde65a0012776] ~> TaskHandler[id: 574; name: POREC:digest_align_annotate (565); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/908864617d175f962a0e017b09b4e9] ~> TaskHandler[id: 545; name: POREC:digest_align_annotate (536); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/63cab1a95b8252c22f3dcc33d68e4a] ~> TaskHandler[id: 546; name: POREC:digest_align_annotate (537); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/a208dee6e584ef88cf52a1b011f31c] ~> TaskHandler[id: 547; name: POREC:digest_align_annotate (538); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/fe27350e8597dd4902391ebf57a489] ~> TaskHandler[id: 549; name: POREC:digest_align_annotate (540); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/3efac6a7480390ccba370925b3af51] ~> TaskHandler[id: 548; name: POREC:digest_align_annotate (539); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ca07a067efacebc9d51a426f2e01cd] ~> TaskHandler[id: 550; name: POREC:digest_align_annotate (541); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/088e29637044323124ff3766ee36b0] .. remaining tasks omitted. Aug-17 13:30:50.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 542; name: POREC:digest_align_annotate (533); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/522c6377c2ff9f6527d3af29a1b305] Aug-17 13:30:50.801 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (533)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/522c6377c2ff9f6527d3af29a1b305/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:30:50.801 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:30:50.806 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:30:50.807 [Task submitter] INFO nextflow.Session - [e7/b8d059] Submitted process > POREC:digest_align_annotate (534) Aug-17 13:32:36.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 543; name: POREC:digest_align_annotate (534); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/b8d0598c454ab320063f65a58c6022] Aug-17 13:32:36.194 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (534)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/b8d0598c454ab320063f65a58c6022/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:32:36.195 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:32:36.199 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:32:36.199 [Task submitter] INFO nextflow.Session - [83/967aa7] Submitted process > POREC:digest_align_annotate (532) Aug-17 13:33:39.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 541; name: POREC:digest_align_annotate (532); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/967aa76e968c502c56c8243f01a366] Aug-17 13:34:14.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 541; name: POREC:digest_align_annotate (532); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/967aa76e968c502c56c8243f01a366] Aug-17 13:34:14.433 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (532)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/967aa76e968c502c56c8243f01a366/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:34:14.436 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:34:14.455 [Task submitter] INFO nextflow.Session - [79/019e11] Submitted process > POREC:digest_align_annotate (535) Aug-17 13:34:14.456 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:35:25.676 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 574; name: POREC:digest_align_annotate (565); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/908864617d175f962a0e017b09b4e9] ~> TaskHandler[id: 545; name: POREC:digest_align_annotate (536); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/63cab1a95b8252c22f3dcc33d68e4a] ~> TaskHandler[id: 546; name: POREC:digest_align_annotate (537); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/a208dee6e584ef88cf52a1b011f31c] ~> TaskHandler[id: 547; name: POREC:digest_align_annotate (538); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/fe27350e8597dd4902391ebf57a489] ~> TaskHandler[id: 549; name: POREC:digest_align_annotate (540); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/3efac6a7480390ccba370925b3af51] ~> TaskHandler[id: 548; name: POREC:digest_align_annotate (539); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ca07a067efacebc9d51a426f2e01cd] ~> TaskHandler[id: 550; name: POREC:digest_align_annotate (541); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/088e29637044323124ff3766ee36b0] ~> TaskHandler[id: 551; name: POREC:digest_align_annotate (542); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6401ad739f393b68b42e2ab68c4e4a] ~> TaskHandler[id: 552; name: POREC:digest_align_annotate (543); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/9538bf92d8ee66ef99e9d3119fb57e] ~> TaskHandler[id: 553; name: POREC:digest_align_annotate (544); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/59f1b00aacf3376f39935494712dfb] .. remaining tasks omitted. Aug-17 13:36:10.651 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 544; name: POREC:digest_align_annotate (535); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/019e1115ad7ab67d6cde65a0012776] Aug-17 13:36:10.652 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (535)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/019e1115ad7ab67d6cde65a0012776/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:36:10.652 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:36:10.657 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:36:10.657 [Task submitter] INFO nextflow.Session - [78/908864] Submitted process > POREC:digest_align_annotate (565) Aug-17 13:37:52.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 574; name: POREC:digest_align_annotate (565); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/908864617d175f962a0e017b09b4e9] Aug-17 13:37:52.866 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (565)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/908864617d175f962a0e017b09b4e9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:37:52.870 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:37:52.897 [Task submitter] INFO nextflow.Session - [98/63cab1] Submitted process > POREC:digest_align_annotate (536) Aug-17 13:37:52.898 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:38:39.126 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 545; name: POREC:digest_align_annotate (536); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/63cab1a95b8252c22f3dcc33d68e4a] Aug-17 13:39:43.221 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 545; name: POREC:digest_align_annotate (536); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/63cab1a95b8252c22f3dcc33d68e4a] Aug-17 13:39:43.222 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (536)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/63cab1a95b8252c22f3dcc33d68e4a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:39:43.222 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:39:43.227 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:39:43.227 [Task submitter] INFO nextflow.Session - [4a/a208de] Submitted process > POREC:digest_align_annotate (537) Aug-17 13:40:26.372 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 547; name: POREC:digest_align_annotate (538); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/fe27350e8597dd4902391ebf57a489] ~> TaskHandler[id: 549; name: POREC:digest_align_annotate (540); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/3efac6a7480390ccba370925b3af51] ~> TaskHandler[id: 548; name: POREC:digest_align_annotate (539); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ca07a067efacebc9d51a426f2e01cd] ~> TaskHandler[id: 550; name: POREC:digest_align_annotate (541); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/088e29637044323124ff3766ee36b0] ~> TaskHandler[id: 551; name: POREC:digest_align_annotate (542); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6401ad739f393b68b42e2ab68c4e4a] ~> TaskHandler[id: 552; name: POREC:digest_align_annotate (543); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/9538bf92d8ee66ef99e9d3119fb57e] ~> TaskHandler[id: 553; name: POREC:digest_align_annotate (544); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/59f1b00aacf3376f39935494712dfb] ~> TaskHandler[id: 554; name: POREC:digest_align_annotate (545); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/91d954f7ff5dfb1f235fef67683acd] ~> TaskHandler[id: 556; name: POREC:digest_align_annotate (547); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/af16fa67a9c2742efa309ab736ccb8] ~> TaskHandler[id: 557; name: POREC:digest_align_annotate (548); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b3a7191f3b645f4a93c37f36b38890] .. remaining tasks omitted. Aug-17 13:41:34.321 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 546; name: POREC:digest_align_annotate (537); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/a208dee6e584ef88cf52a1b011f31c] Aug-17 13:41:34.322 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (537)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/a208dee6e584ef88cf52a1b011f31c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:41:34.322 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:41:34.326 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:41:34.326 [Task submitter] INFO nextflow.Session - [8d/fe2735] Submitted process > POREC:digest_align_annotate (538) Aug-17 13:43:28.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 547; name: POREC:digest_align_annotate (538); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/fe27350e8597dd4902391ebf57a489] Aug-17 13:43:28.830 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (538)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/fe27350e8597dd4902391ebf57a489/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:43:28.831 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:43:28.836 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:43:28.836 [Task submitter] INFO nextflow.Session - [85/3efac6] Submitted process > POREC:digest_align_annotate (540) Aug-17 13:43:39.140 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 549; name: POREC:digest_align_annotate (540); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/3efac6a7480390ccba370925b3af51] Aug-17 13:45:20.291 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 549; name: POREC:digest_align_annotate (540); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/3efac6a7480390ccba370925b3af51] Aug-17 13:45:20.293 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (540)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/3efac6a7480390ccba370925b3af51/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:45:20.294 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:45:20.301 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:45:20.301 [Task submitter] INFO nextflow.Session - [91/ca07a0] Submitted process > POREC:digest_align_annotate (539) Aug-17 13:45:27.332 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 550; name: POREC:digest_align_annotate (541); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/088e29637044323124ff3766ee36b0] ~> TaskHandler[id: 551; name: POREC:digest_align_annotate (542); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6401ad739f393b68b42e2ab68c4e4a] ~> TaskHandler[id: 552; name: POREC:digest_align_annotate (543); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/9538bf92d8ee66ef99e9d3119fb57e] ~> TaskHandler[id: 553; name: POREC:digest_align_annotate (544); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/59f1b00aacf3376f39935494712dfb] ~> TaskHandler[id: 554; name: POREC:digest_align_annotate (545); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/91d954f7ff5dfb1f235fef67683acd] ~> TaskHandler[id: 556; name: POREC:digest_align_annotate (547); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/af16fa67a9c2742efa309ab736ccb8] ~> TaskHandler[id: 557; name: POREC:digest_align_annotate (548); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b3a7191f3b645f4a93c37f36b38890] ~> TaskHandler[id: 558; name: POREC:digest_align_annotate (549); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/7612c9c10892219fce4c1e0ce03d80] ~> TaskHandler[id: 559; name: POREC:digest_align_annotate (550); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6994c7228d85e90ef702e9e72e87bc] ~> TaskHandler[id: 560; name: POREC:digest_align_annotate (551); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/35c63cd935dfb8946634caedfc2ac4] .. remaining tasks omitted. Aug-17 13:47:02.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 548; name: POREC:digest_align_annotate (539); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ca07a067efacebc9d51a426f2e01cd] Aug-17 13:47:02.905 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (539)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ca07a067efacebc9d51a426f2e01cd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:47:02.906 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:47:02.910 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:47:02.910 [Task submitter] INFO nextflow.Session - [68/088e29] Submitted process > POREC:digest_align_annotate (541) Aug-17 13:48:39.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 550; name: POREC:digest_align_annotate (541); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/088e29637044323124ff3766ee36b0] Aug-17 13:48:51.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 550; name: POREC:digest_align_annotate (541); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/088e29637044323124ff3766ee36b0] Aug-17 13:48:51.362 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (541)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/088e29637044323124ff3766ee36b0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:48:51.362 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:48:51.366 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:48:51.394 [Task submitter] INFO nextflow.Session - [9e/6401ad] Submitted process > POREC:digest_align_annotate (542) Aug-17 13:50:27.686 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 552; name: POREC:digest_align_annotate (543); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/9538bf92d8ee66ef99e9d3119fb57e] ~> TaskHandler[id: 553; name: POREC:digest_align_annotate (544); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/59f1b00aacf3376f39935494712dfb] ~> TaskHandler[id: 554; name: POREC:digest_align_annotate (545); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/91d954f7ff5dfb1f235fef67683acd] ~> TaskHandler[id: 556; name: POREC:digest_align_annotate (547); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/af16fa67a9c2742efa309ab736ccb8] ~> TaskHandler[id: 557; name: POREC:digest_align_annotate (548); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b3a7191f3b645f4a93c37f36b38890] ~> TaskHandler[id: 558; name: POREC:digest_align_annotate (549); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/7612c9c10892219fce4c1e0ce03d80] ~> TaskHandler[id: 559; name: POREC:digest_align_annotate (550); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6994c7228d85e90ef702e9e72e87bc] ~> TaskHandler[id: 560; name: POREC:digest_align_annotate (551); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/35c63cd935dfb8946634caedfc2ac4] ~> TaskHandler[id: 561; name: POREC:digest_align_annotate (552); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/502e005305ef6af43bddd64f16718b] ~> TaskHandler[id: 562; name: POREC:digest_align_annotate (553); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7aa37561ca49bd2850334019ffeb67] .. remaining tasks omitted. Aug-17 13:50:31.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 551; name: POREC:digest_align_annotate (542); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6401ad739f393b68b42e2ab68c4e4a] Aug-17 13:50:31.253 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (542)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6401ad739f393b68b42e2ab68c4e4a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:50:31.254 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:50:31.260 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:50:31.260 [Task submitter] INFO nextflow.Session - [f9/9538bf] Submitted process > POREC:digest_align_annotate (543) Aug-17 13:52:07.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 552; name: POREC:digest_align_annotate (543); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/9538bf92d8ee66ef99e9d3119fb57e] Aug-17 13:52:07.197 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (543)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/9538bf92d8ee66ef99e9d3119fb57e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:52:07.202 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:52:07.228 [Task submitter] INFO nextflow.Session - [2d/59f1b0] Submitted process > POREC:digest_align_annotate (544) Aug-17 13:52:07.229 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:53:39.211 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 553; name: POREC:digest_align_annotate (544); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/59f1b00aacf3376f39935494712dfb] Aug-17 13:53:44.672 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 553; name: POREC:digest_align_annotate (544); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/59f1b00aacf3376f39935494712dfb] Aug-17 13:53:44.672 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (544)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/59f1b00aacf3376f39935494712dfb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:53:44.673 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:53:44.678 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:53:44.678 [Task submitter] INFO nextflow.Session - [da/91d954] Submitted process > POREC:digest_align_annotate (545) Aug-17 13:55:20.128 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 554; name: POREC:digest_align_annotate (545); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/91d954f7ff5dfb1f235fef67683acd] Aug-17 13:55:20.129 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (545)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/91d954f7ff5dfb1f235fef67683acd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:55:20.130 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:55:20.135 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:55:20.135 [Task submitter] INFO nextflow.Session - [b7/af16fa] Submitted process > POREC:digest_align_annotate (547) Aug-17 13:55:28.166 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 557; name: POREC:digest_align_annotate (548); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b3a7191f3b645f4a93c37f36b38890] ~> TaskHandler[id: 558; name: POREC:digest_align_annotate (549); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/7612c9c10892219fce4c1e0ce03d80] ~> TaskHandler[id: 559; name: POREC:digest_align_annotate (550); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6994c7228d85e90ef702e9e72e87bc] ~> TaskHandler[id: 560; name: POREC:digest_align_annotate (551); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/35c63cd935dfb8946634caedfc2ac4] ~> TaskHandler[id: 561; name: POREC:digest_align_annotate (552); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/502e005305ef6af43bddd64f16718b] ~> TaskHandler[id: 562; name: POREC:digest_align_annotate (553); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7aa37561ca49bd2850334019ffeb67] ~> TaskHandler[id: 563; name: POREC:digest_align_annotate (554); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/74c133c9408bd5e75b8dc930d5c84a] ~> TaskHandler[id: 564; name: POREC:digest_align_annotate (555); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/93cfe4c76dbd2ad28791f44701887a] ~> TaskHandler[id: 566; name: POREC:digest_align_annotate (557); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/5dd6c13aba04c65e8092c672f20f10] ~> TaskHandler[id: 565; name: POREC:digest_align_annotate (556); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/c6e7dfcef3ff4352f8c334248213ad] .. remaining tasks omitted. Aug-17 13:56:56.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 556; name: POREC:digest_align_annotate (547); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/af16fa67a9c2742efa309ab736ccb8] Aug-17 13:56:56.996 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (547)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/af16fa67a9c2742efa309ab736ccb8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:56:56.997 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:56:57.001 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:56:57.002 [Task submitter] INFO nextflow.Session - [a9/b3a719] Submitted process > POREC:digest_align_annotate (548) Aug-17 13:58:39.297 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 557; name: POREC:digest_align_annotate (548); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b3a7191f3b645f4a93c37f36b38890] Aug-17 13:59:00.053 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 557; name: POREC:digest_align_annotate (548); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b3a7191f3b645f4a93c37f36b38890] Aug-17 13:59:00.054 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (548)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b3a7191f3b645f4a93c37f36b38890/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 13:59:00.054 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 13:59:00.100 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 13:59:00.100 [Task submitter] INFO nextflow.Session - [5c/7612c9] Submitted process > POREC:digest_align_annotate (549) Aug-17 14:00:28.421 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 559; name: POREC:digest_align_annotate (550); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6994c7228d85e90ef702e9e72e87bc] ~> TaskHandler[id: 560; name: POREC:digest_align_annotate (551); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/35c63cd935dfb8946634caedfc2ac4] ~> TaskHandler[id: 561; name: POREC:digest_align_annotate (552); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/502e005305ef6af43bddd64f16718b] ~> TaskHandler[id: 562; name: POREC:digest_align_annotate (553); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7aa37561ca49bd2850334019ffeb67] ~> TaskHandler[id: 563; name: POREC:digest_align_annotate (554); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/74c133c9408bd5e75b8dc930d5c84a] ~> TaskHandler[id: 564; name: POREC:digest_align_annotate (555); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/93cfe4c76dbd2ad28791f44701887a] ~> TaskHandler[id: 566; name: POREC:digest_align_annotate (557); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/5dd6c13aba04c65e8092c672f20f10] ~> TaskHandler[id: 565; name: POREC:digest_align_annotate (556); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/c6e7dfcef3ff4352f8c334248213ad] ~> TaskHandler[id: 567; name: POREC:digest_align_annotate (558); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1e928db64743fe16aea492841f82c2] ~> TaskHandler[id: 568; name: POREC:digest_align_annotate (559); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/dd7b947f108664ee446dac01015468] .. remaining tasks omitted. Aug-17 14:00:38.427 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 558; name: POREC:digest_align_annotate (549); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/7612c9c10892219fce4c1e0ce03d80] Aug-17 14:00:38.428 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (549)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/7612c9c10892219fce4c1e0ce03d80/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:00:38.429 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:00:38.463 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:00:38.463 [Task submitter] INFO nextflow.Session - [9e/6994c7] Submitted process > POREC:digest_align_annotate (550) Aug-17 14:02:10.179 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 559; name: POREC:digest_align_annotate (550); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6994c7228d85e90ef702e9e72e87bc] Aug-17 14:02:10.179 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (550)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/6994c7228d85e90ef702e9e72e87bc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:02:10.180 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:02:10.195 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:02:10.195 [Task submitter] INFO nextflow.Session - [da/35c63c] Submitted process > POREC:digest_align_annotate (551) Aug-17 14:03:39.392 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 560; name: POREC:digest_align_annotate (551); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/35c63cd935dfb8946634caedfc2ac4] Aug-17 14:03:48.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 560; name: POREC:digest_align_annotate (551); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/35c63cd935dfb8946634caedfc2ac4] Aug-17 14:03:48.754 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (551)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/35c63cd935dfb8946634caedfc2ac4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:03:48.755 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:03:48.762 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:03:48.762 [Task submitter] INFO nextflow.Session - [e9/502e00] Submitted process > POREC:digest_align_annotate (552) Aug-17 14:05:28.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 561; name: POREC:digest_align_annotate (552); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/502e005305ef6af43bddd64f16718b] Aug-17 14:05:28.561 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (552)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/502e005305ef6af43bddd64f16718b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:05:28.562 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:05:28.565 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:05:28.565 [Task submitter] INFO nextflow.Session - [bf/7aa375] Submitted process > POREC:digest_align_annotate (553) Aug-17 14:05:28.617 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 898 -- tasks to be submitted are shown below ~> TaskHandler[id: 563; name: POREC:digest_align_annotate (554); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/74c133c9408bd5e75b8dc930d5c84a] ~> TaskHandler[id: 564; name: POREC:digest_align_annotate (555); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/93cfe4c76dbd2ad28791f44701887a] ~> TaskHandler[id: 566; name: POREC:digest_align_annotate (557); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/5dd6c13aba04c65e8092c672f20f10] ~> TaskHandler[id: 565; name: POREC:digest_align_annotate (556); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/c6e7dfcef3ff4352f8c334248213ad] ~> TaskHandler[id: 567; name: POREC:digest_align_annotate (558); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1e928db64743fe16aea492841f82c2] ~> TaskHandler[id: 568; name: POREC:digest_align_annotate (559); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/dd7b947f108664ee446dac01015468] ~> TaskHandler[id: 569; name: POREC:digest_align_annotate (560); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/bfc380dbafe38c7c9de71f14d07b86] ~> TaskHandler[id: 572; name: POREC:digest_align_annotate (563); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/80ae2ca4da347d2634a306314404b9] ~> TaskHandler[id: 570; name: POREC:digest_align_annotate (561); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/2accacd27d6226eed25f072c00362a] ~> TaskHandler[id: 573; name: POREC:digest_align_annotate (564); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/c22d9f5b05dd51aaa747641238043f] .. remaining tasks omitted. Aug-17 14:07:07.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 562; name: POREC:digest_align_annotate (553); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7aa37561ca49bd2850334019ffeb67] Aug-17 14:07:07.743 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (553)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7aa37561ca49bd2850334019ffeb67/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:07:07.744 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:07:07.748 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:07:07.748 [Task submitter] INFO nextflow.Session - [92/74c133] Submitted process > POREC:digest_align_annotate (554) Aug-17 14:08:39.470 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 563; name: POREC:digest_align_annotate (554); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/74c133c9408bd5e75b8dc930d5c84a] Aug-17 14:08:55.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 563; name: POREC:digest_align_annotate (554); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/74c133c9408bd5e75b8dc930d5c84a] Aug-17 14:08:55.686 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (554)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/74c133c9408bd5e75b8dc930d5c84a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:08:55.687 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:08:55.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:08:55.692 [Task submitter] INFO nextflow.Session - [41/93cfe4] Submitted process > POREC:digest_align_annotate (555) Aug-17 14:10:28.970 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 566; name: POREC:digest_align_annotate (557); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/5dd6c13aba04c65e8092c672f20f10] ~> TaskHandler[id: 565; name: POREC:digest_align_annotate (556); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/c6e7dfcef3ff4352f8c334248213ad] ~> TaskHandler[id: 567; name: POREC:digest_align_annotate (558); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1e928db64743fe16aea492841f82c2] ~> TaskHandler[id: 568; name: POREC:digest_align_annotate (559); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/dd7b947f108664ee446dac01015468] ~> TaskHandler[id: 569; name: POREC:digest_align_annotate (560); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/bfc380dbafe38c7c9de71f14d07b86] ~> TaskHandler[id: 572; name: POREC:digest_align_annotate (563); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/80ae2ca4da347d2634a306314404b9] ~> TaskHandler[id: 570; name: POREC:digest_align_annotate (561); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/2accacd27d6226eed25f072c00362a] ~> TaskHandler[id: 573; name: POREC:digest_align_annotate (564); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/c22d9f5b05dd51aaa747641238043f] ~> TaskHandler[id: 571; name: POREC:digest_align_annotate (562); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/2e3be015801fd559d269dc57b5091c] ~> TaskHandler[id: 575; name: POREC:digest_align_annotate (566); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/3f20610ff68c3c0f33d4206c596a70] .. remaining tasks omitted. Aug-17 14:10:32.236 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 564; name: POREC:digest_align_annotate (555); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/93cfe4c76dbd2ad28791f44701887a] Aug-17 14:10:32.237 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (555)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/93cfe4c76dbd2ad28791f44701887a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:10:32.238 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:10:32.242 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:10:32.242 [Task submitter] INFO nextflow.Session - [88/5dd6c1] Submitted process > POREC:digest_align_annotate (557) Aug-17 14:12:31.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 566; name: POREC:digest_align_annotate (557); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/5dd6c13aba04c65e8092c672f20f10] Aug-17 14:12:31.990 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (557)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/5dd6c13aba04c65e8092c672f20f10/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:12:31.991 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:12:31.996 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:12:31.996 [Task submitter] INFO nextflow.Session - [07/c6e7df] Submitted process > POREC:digest_align_annotate (556) Aug-17 14:13:39.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 565; name: POREC:digest_align_annotate (556); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/c6e7dfcef3ff4352f8c334248213ad] Aug-17 14:14:07.746 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 565; name: POREC:digest_align_annotate (556); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/c6e7dfcef3ff4352f8c334248213ad] Aug-17 14:14:07.747 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (556)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/c6e7dfcef3ff4352f8c334248213ad/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:14:07.748 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:14:07.761 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:14:07.761 [Task submitter] INFO nextflow.Session - [c9/1e928d] Submitted process > POREC:digest_align_annotate (558) Aug-17 14:15:29.002 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 568; name: POREC:digest_align_annotate (559); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/dd7b947f108664ee446dac01015468] ~> TaskHandler[id: 569; name: POREC:digest_align_annotate (560); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/bfc380dbafe38c7c9de71f14d07b86] ~> TaskHandler[id: 572; name: POREC:digest_align_annotate (563); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/80ae2ca4da347d2634a306314404b9] ~> TaskHandler[id: 570; name: POREC:digest_align_annotate (561); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/2accacd27d6226eed25f072c00362a] ~> TaskHandler[id: 573; name: POREC:digest_align_annotate (564); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/c22d9f5b05dd51aaa747641238043f] ~> TaskHandler[id: 571; name: POREC:digest_align_annotate (562); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/2e3be015801fd559d269dc57b5091c] ~> TaskHandler[id: 575; name: POREC:digest_align_annotate (566); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/3f20610ff68c3c0f33d4206c596a70] ~> TaskHandler[id: 576; name: POREC:digest_align_annotate (567); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/7fdf49a6c3cfe0936f1cb9101b9c5e] ~> TaskHandler[id: 578; name: POREC:digest_align_annotate (569); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/84f179e67a4ff4b947e202a59b51ce] ~> TaskHandler[id: 577; name: POREC:digest_align_annotate (568); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/43694dee9e87c2ca3d29708f7367c9] .. remaining tasks omitted. Aug-17 14:15:58.277 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 567; name: POREC:digest_align_annotate (558); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1e928db64743fe16aea492841f82c2] Aug-17 14:15:58.277 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (558)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/1e928db64743fe16aea492841f82c2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:15:58.278 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:15:58.283 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:15:58.283 [Task submitter] INFO nextflow.Session - [32/dd7b94] Submitted process > POREC:digest_align_annotate (559) Aug-17 14:17:57.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 568; name: POREC:digest_align_annotate (559); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/dd7b947f108664ee446dac01015468] Aug-17 14:17:57.785 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (559)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/dd7b947f108664ee446dac01015468/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:17:57.789 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:17:57.793 [Task submitter] INFO nextflow.Session - [6b/bfc380] Submitted process > POREC:digest_align_annotate (560) Aug-17 14:17:57.794 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:18:39.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 569; name: POREC:digest_align_annotate (560); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/bfc380dbafe38c7c9de71f14d07b86] Aug-17 14:19:34.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 569; name: POREC:digest_align_annotate (560); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/bfc380dbafe38c7c9de71f14d07b86] Aug-17 14:19:34.800 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (560)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/bfc380dbafe38c7c9de71f14d07b86/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:19:34.801 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:19:34.813 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:19:34.813 [Task submitter] INFO nextflow.Session - [c2/80ae2c] Submitted process > POREC:digest_align_annotate (563) Aug-17 14:20:29.992 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 570; name: POREC:digest_align_annotate (561); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/2accacd27d6226eed25f072c00362a] ~> TaskHandler[id: 573; name: POREC:digest_align_annotate (564); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/c22d9f5b05dd51aaa747641238043f] ~> TaskHandler[id: 571; name: POREC:digest_align_annotate (562); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/2e3be015801fd559d269dc57b5091c] ~> TaskHandler[id: 575; name: POREC:digest_align_annotate (566); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/3f20610ff68c3c0f33d4206c596a70] ~> TaskHandler[id: 576; name: POREC:digest_align_annotate (567); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/7fdf49a6c3cfe0936f1cb9101b9c5e] ~> TaskHandler[id: 578; name: POREC:digest_align_annotate (569); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/84f179e67a4ff4b947e202a59b51ce] ~> TaskHandler[id: 577; name: POREC:digest_align_annotate (568); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/43694dee9e87c2ca3d29708f7367c9] ~> TaskHandler[id: 579; name: POREC:digest_align_annotate (570); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3e682d03409cab9b4ee8e1671990ea] ~> TaskHandler[id: 580; name: POREC:digest_align_annotate (571); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/5e5d395b65e16865534c1dea489631] ~> TaskHandler[id: 581; name: POREC:digest_align_annotate (572); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/a43df1abef177c9bddcf1143943bf4] .. remaining tasks omitted. Aug-17 14:21:20.354 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 572; name: POREC:digest_align_annotate (563); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/80ae2ca4da347d2634a306314404b9] Aug-17 14:21:20.355 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (563)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/80ae2ca4da347d2634a306314404b9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:21:20.356 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:21:20.361 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:21:20.361 [Task submitter] INFO nextflow.Session - [5e/2accac] Submitted process > POREC:digest_align_annotate (561) Aug-17 14:23:03.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 570; name: POREC:digest_align_annotate (561); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/2accacd27d6226eed25f072c00362a] Aug-17 14:23:03.595 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (561)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/2accacd27d6226eed25f072c00362a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:23:03.595 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:23:03.600 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:23:03.600 [Task submitter] INFO nextflow.Session - [c5/c22d9f] Submitted process > POREC:digest_align_annotate (564) Aug-17 14:23:39.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 573; name: POREC:digest_align_annotate (564); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/c22d9f5b05dd51aaa747641238043f] Aug-17 14:24:51.086 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 573; name: POREC:digest_align_annotate (564); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/c22d9f5b05dd51aaa747641238043f] Aug-17 14:24:51.087 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (564)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/c22d9f5b05dd51aaa747641238043f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:24:51.088 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:24:51.093 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:24:51.093 [Task submitter] INFO nextflow.Session - [3a/2e3be0] Submitted process > POREC:digest_align_annotate (562) Aug-17 14:25:30.229 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 575; name: POREC:digest_align_annotate (566); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/3f20610ff68c3c0f33d4206c596a70] ~> TaskHandler[id: 576; name: POREC:digest_align_annotate (567); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/7fdf49a6c3cfe0936f1cb9101b9c5e] ~> TaskHandler[id: 578; name: POREC:digest_align_annotate (569); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/84f179e67a4ff4b947e202a59b51ce] ~> TaskHandler[id: 577; name: POREC:digest_align_annotate (568); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/43694dee9e87c2ca3d29708f7367c9] ~> TaskHandler[id: 579; name: POREC:digest_align_annotate (570); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3e682d03409cab9b4ee8e1671990ea] ~> TaskHandler[id: 580; name: POREC:digest_align_annotate (571); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/5e5d395b65e16865534c1dea489631] ~> TaskHandler[id: 581; name: POREC:digest_align_annotate (572); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/a43df1abef177c9bddcf1143943bf4] ~> TaskHandler[id: 582; name: POREC:digest_align_annotate (573); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/bc5aabd2eb740c25a902e0752e8eef] ~> TaskHandler[id: 583; name: POREC:digest_align_annotate (574); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/7d3a0647b031ed3ce6064cc38eee37] ~> TaskHandler[id: 584; name: POREC:digest_align_annotate (575); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/e1b277dbdb70990dd24adc0ead29ce] .. remaining tasks omitted. Aug-17 14:26:39.273 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 571; name: POREC:digest_align_annotate (562); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/2e3be015801fd559d269dc57b5091c] Aug-17 14:26:39.274 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (562)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/2e3be015801fd559d269dc57b5091c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:26:39.275 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:26:39.279 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:26:39.279 [Task submitter] INFO nextflow.Session - [17/3f2061] Submitted process > POREC:digest_align_annotate (566) Aug-17 14:28:31.846 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 575; name: POREC:digest_align_annotate (566); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/3f20610ff68c3c0f33d4206c596a70] Aug-17 14:28:31.847 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (566)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/3f20610ff68c3c0f33d4206c596a70/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:28:31.847 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:28:31.852 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:28:31.852 [Task submitter] INFO nextflow.Session - [ea/7fdf49] Submitted process > POREC:digest_align_annotate (567) Aug-17 14:28:39.754 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 576; name: POREC:digest_align_annotate (567); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/7fdf49a6c3cfe0936f1cb9101b9c5e] Aug-17 14:30:19.798 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 576; name: POREC:digest_align_annotate (567); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/7fdf49a6c3cfe0936f1cb9101b9c5e] Aug-17 14:30:19.799 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (567)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/7fdf49a6c3cfe0936f1cb9101b9c5e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:30:19.800 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:30:19.813 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:30:19.813 [Task submitter] INFO nextflow.Session - [2e/84f179] Submitted process > POREC:digest_align_annotate (569) Aug-17 14:30:30.855 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 577; name: POREC:digest_align_annotate (568); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/43694dee9e87c2ca3d29708f7367c9] ~> TaskHandler[id: 579; name: POREC:digest_align_annotate (570); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3e682d03409cab9b4ee8e1671990ea] ~> TaskHandler[id: 580; name: POREC:digest_align_annotate (571); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/5e5d395b65e16865534c1dea489631] ~> TaskHandler[id: 581; name: POREC:digest_align_annotate (572); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/a43df1abef177c9bddcf1143943bf4] ~> TaskHandler[id: 582; name: POREC:digest_align_annotate (573); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/bc5aabd2eb740c25a902e0752e8eef] ~> TaskHandler[id: 583; name: POREC:digest_align_annotate (574); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/7d3a0647b031ed3ce6064cc38eee37] ~> TaskHandler[id: 584; name: POREC:digest_align_annotate (575); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/e1b277dbdb70990dd24adc0ead29ce] ~> TaskHandler[id: 586; name: POREC:digest_align_annotate (577); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4972b20c46a700564562b73d8bff34] ~> TaskHandler[id: 615; name: POREC:digest_align_annotate (606); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1474755fde273f4adfdc6dfe4a4524] ~> TaskHandler[id: 585; name: POREC:digest_align_annotate (576); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/17a149a580af0aa97950ec7333e1d1] .. remaining tasks omitted. Aug-17 14:32:02.892 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 578; name: POREC:digest_align_annotate (569); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/84f179e67a4ff4b947e202a59b51ce] Aug-17 14:32:02.893 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (569)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/84f179e67a4ff4b947e202a59b51ce/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:32:02.899 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:32:02.910 [Task submitter] INFO nextflow.Session - [69/43694d] Submitted process > POREC:digest_align_annotate (568) Aug-17 14:32:02.911 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:33:39.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 577; name: POREC:digest_align_annotate (568); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/43694dee9e87c2ca3d29708f7367c9] Aug-17 14:33:52.287 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 577; name: POREC:digest_align_annotate (568); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/43694dee9e87c2ca3d29708f7367c9] Aug-17 14:33:52.288 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (568)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/43694dee9e87c2ca3d29708f7367c9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:33:52.288 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:33:52.293 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:33:52.293 [Task submitter] INFO nextflow.Session - [9a/3e682d] Submitted process > POREC:digest_align_annotate (570) Aug-17 14:35:31.603 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 580; name: POREC:digest_align_annotate (571); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/5e5d395b65e16865534c1dea489631] ~> TaskHandler[id: 581; name: POREC:digest_align_annotate (572); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/a43df1abef177c9bddcf1143943bf4] ~> TaskHandler[id: 582; name: POREC:digest_align_annotate (573); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/bc5aabd2eb740c25a902e0752e8eef] ~> TaskHandler[id: 583; name: POREC:digest_align_annotate (574); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/7d3a0647b031ed3ce6064cc38eee37] ~> TaskHandler[id: 584; name: POREC:digest_align_annotate (575); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/e1b277dbdb70990dd24adc0ead29ce] ~> TaskHandler[id: 586; name: POREC:digest_align_annotate (577); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4972b20c46a700564562b73d8bff34] ~> TaskHandler[id: 615; name: POREC:digest_align_annotate (606); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1474755fde273f4adfdc6dfe4a4524] ~> TaskHandler[id: 585; name: POREC:digest_align_annotate (576); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/17a149a580af0aa97950ec7333e1d1] ~> TaskHandler[id: 587; name: POREC:digest_align_annotate (578); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/6c1ebd1a954a0c1a59ee61127756e6] ~> TaskHandler[id: 588; name: POREC:digest_align_annotate (579); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/052080d820e6ad4c9efb1e0c63b5e7] .. remaining tasks omitted. Aug-17 14:35:37.014 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 579; name: POREC:digest_align_annotate (570); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3e682d03409cab9b4ee8e1671990ea] Aug-17 14:35:37.015 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (570)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3e682d03409cab9b4ee8e1671990ea/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:35:37.016 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:35:37.021 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:35:37.021 [Task submitter] INFO nextflow.Session - [5e/5e5d39] Submitted process > POREC:digest_align_annotate (571) Aug-17 14:37:06.395 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 580; name: POREC:digest_align_annotate (571); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/5e5d395b65e16865534c1dea489631] Aug-17 14:37:06.396 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (571)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/5e5d395b65e16865534c1dea489631/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:37:06.397 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:37:06.402 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:37:06.402 [Task submitter] INFO nextflow.Session - [ce/a43df1] Submitted process > POREC:digest_align_annotate (572) Aug-17 14:38:39.811 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 581; name: POREC:digest_align_annotate (572); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/a43df1abef177c9bddcf1143943bf4] Aug-17 14:38:45.218 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 581; name: POREC:digest_align_annotate (572); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/a43df1abef177c9bddcf1143943bf4] Aug-17 14:38:45.219 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (572)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/a43df1abef177c9bddcf1143943bf4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:38:45.220 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:38:45.225 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:38:45.225 [Task submitter] INFO nextflow.Session - [82/bc5aab] Submitted process > POREC:digest_align_annotate (573) Aug-17 14:40:14.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 582; name: POREC:digest_align_annotate (573); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/bc5aabd2eb740c25a902e0752e8eef] Aug-17 14:40:14.538 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (573)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/bc5aabd2eb740c25a902e0752e8eef/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:40:14.550 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:40:14.553 [Task submitter] INFO nextflow.Session - [15/7d3a06] Submitted process > POREC:digest_align_annotate (574) Aug-17 14:40:14.553 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:40:31.617 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 584; name: POREC:digest_align_annotate (575); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/e1b277dbdb70990dd24adc0ead29ce] ~> TaskHandler[id: 586; name: POREC:digest_align_annotate (577); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4972b20c46a700564562b73d8bff34] ~> TaskHandler[id: 615; name: POREC:digest_align_annotate (606); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1474755fde273f4adfdc6dfe4a4524] ~> TaskHandler[id: 585; name: POREC:digest_align_annotate (576); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/17a149a580af0aa97950ec7333e1d1] ~> TaskHandler[id: 587; name: POREC:digest_align_annotate (578); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/6c1ebd1a954a0c1a59ee61127756e6] ~> TaskHandler[id: 588; name: POREC:digest_align_annotate (579); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/052080d820e6ad4c9efb1e0c63b5e7] ~> TaskHandler[id: 589; name: POREC:digest_align_annotate (580); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/8667b68f220a784ef3a2993adb0e76] ~> TaskHandler[id: 590; name: POREC:digest_align_annotate (581); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/fe82e1985a2c498f058b472c6b6059] ~> TaskHandler[id: 591; name: POREC:digest_align_annotate (582); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/03c73183433f7e53195fd86301b35c] ~> TaskHandler[id: 592; name: POREC:digest_align_annotate (583); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/00fd6b01faaa0bc5062a329b6f97fe] .. remaining tasks omitted. Aug-17 14:41:49.811 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 583; name: POREC:digest_align_annotate (574); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/7d3a0647b031ed3ce6064cc38eee37] Aug-17 14:41:49.812 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (574)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/7d3a0647b031ed3ce6064cc38eee37/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:41:49.812 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:41:49.817 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:41:49.817 [Task submitter] INFO nextflow.Session - [4d/e1b277] Submitted process > POREC:digest_align_annotate (575) Aug-17 14:43:24.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 584; name: POREC:digest_align_annotate (575); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/e1b277dbdb70990dd24adc0ead29ce] Aug-17 14:43:24.688 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (575)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/e1b277dbdb70990dd24adc0ead29ce/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:43:24.689 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:43:24.693 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:43:24.693 [Task submitter] INFO nextflow.Session - [b5/4972b2] Submitted process > POREC:digest_align_annotate (577) Aug-17 14:43:39.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 586; name: POREC:digest_align_annotate (577); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4972b20c46a700564562b73d8bff34] Aug-17 14:44:58.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 586; name: POREC:digest_align_annotate (577); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4972b20c46a700564562b73d8bff34] Aug-17 14:44:58.510 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (577)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4972b20c46a700564562b73d8bff34/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:44:58.511 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:44:58.517 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:44:58.517 [Task submitter] INFO nextflow.Session - [4d/147475] Submitted process > POREC:digest_align_annotate (606) Aug-17 14:45:31.629 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 585; name: POREC:digest_align_annotate (576); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/17a149a580af0aa97950ec7333e1d1] ~> TaskHandler[id: 587; name: POREC:digest_align_annotate (578); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/6c1ebd1a954a0c1a59ee61127756e6] ~> TaskHandler[id: 588; name: POREC:digest_align_annotate (579); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/052080d820e6ad4c9efb1e0c63b5e7] ~> TaskHandler[id: 589; name: POREC:digest_align_annotate (580); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/8667b68f220a784ef3a2993adb0e76] ~> TaskHandler[id: 590; name: POREC:digest_align_annotate (581); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/fe82e1985a2c498f058b472c6b6059] ~> TaskHandler[id: 591; name: POREC:digest_align_annotate (582); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/03c73183433f7e53195fd86301b35c] ~> TaskHandler[id: 592; name: POREC:digest_align_annotate (583); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/00fd6b01faaa0bc5062a329b6f97fe] ~> TaskHandler[id: 593; name: POREC:digest_align_annotate (584); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/f012959fe913e7dfef9a65bae00daa] ~> TaskHandler[id: 594; name: POREC:digest_align_annotate (585); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/c03089bbc491479e20854f63f9d5f8] ~> TaskHandler[id: 595; name: POREC:digest_align_annotate (586); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/3792ae68bba3d74f72bb7dbabf2973] .. remaining tasks omitted. Aug-17 14:46:37.323 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 615; name: POREC:digest_align_annotate (606); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1474755fde273f4adfdc6dfe4a4524] Aug-17 14:46:37.323 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (606)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1474755fde273f4adfdc6dfe4a4524/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:46:37.324 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:46:37.328 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:46:37.328 [Task submitter] INFO nextflow.Session - [67/17a149] Submitted process > POREC:digest_align_annotate (576) Aug-17 14:48:14.346 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 585; name: POREC:digest_align_annotate (576); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/17a149a580af0aa97950ec7333e1d1] Aug-17 14:48:14.346 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (576)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/17a149a580af0aa97950ec7333e1d1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:48:14.347 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:48:14.352 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:48:14.352 [Task submitter] INFO nextflow.Session - [eb/6c1ebd] Submitted process > POREC:digest_align_annotate (578) Aug-17 14:48:39.979 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 587; name: POREC:digest_align_annotate (578); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/6c1ebd1a954a0c1a59ee61127756e6] Aug-17 14:49:48.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 587; name: POREC:digest_align_annotate (578); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/6c1ebd1a954a0c1a59ee61127756e6] Aug-17 14:49:48.553 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (578)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/6c1ebd1a954a0c1a59ee61127756e6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:49:48.553 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:49:48.558 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:49:48.558 [Task submitter] INFO nextflow.Session - [74/052080] Submitted process > POREC:digest_align_annotate (579) Aug-17 14:50:31.712 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 589; name: POREC:digest_align_annotate (580); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/8667b68f220a784ef3a2993adb0e76] ~> TaskHandler[id: 590; name: POREC:digest_align_annotate (581); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/fe82e1985a2c498f058b472c6b6059] ~> TaskHandler[id: 591; name: POREC:digest_align_annotate (582); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/03c73183433f7e53195fd86301b35c] ~> TaskHandler[id: 592; name: POREC:digest_align_annotate (583); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/00fd6b01faaa0bc5062a329b6f97fe] ~> TaskHandler[id: 593; name: POREC:digest_align_annotate (584); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/f012959fe913e7dfef9a65bae00daa] ~> TaskHandler[id: 594; name: POREC:digest_align_annotate (585); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/c03089bbc491479e20854f63f9d5f8] ~> TaskHandler[id: 595; name: POREC:digest_align_annotate (586); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/3792ae68bba3d74f72bb7dbabf2973] ~> TaskHandler[id: 596; name: POREC:digest_align_annotate (587); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/2c00cae342014200dbac02a6b2d647] ~> TaskHandler[id: 597; name: POREC:digest_align_annotate (588); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/c84b20c3fbe3034bb823b40b6854de] ~> TaskHandler[id: 598; name: POREC:digest_align_annotate (589); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/81063c1b850fdd63b8c4b6476915a9] .. remaining tasks omitted. Aug-17 14:51:29.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 588; name: POREC:digest_align_annotate (579); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/052080d820e6ad4c9efb1e0c63b5e7] Aug-17 14:51:29.961 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (579)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/052080d820e6ad4c9efb1e0c63b5e7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:51:29.962 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:51:29.969 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:51:29.969 [Task submitter] INFO nextflow.Session - [41/8667b6] Submitted process > POREC:digest_align_annotate (580) Aug-17 14:53:07.086 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 589; name: POREC:digest_align_annotate (580); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/8667b68f220a784ef3a2993adb0e76] Aug-17 14:53:07.086 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (580)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/8667b68f220a784ef3a2993adb0e76/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:53:07.087 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:53:07.092 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:53:07.092 [Task submitter] INFO nextflow.Session - [ab/fe82e1] Submitted process > POREC:digest_align_annotate (581) Aug-17 14:53:40.029 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 590; name: POREC:digest_align_annotate (581); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/fe82e1985a2c498f058b472c6b6059] Aug-17 14:54:50.165 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 590; name: POREC:digest_align_annotate (581); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/fe82e1985a2c498f058b472c6b6059] Aug-17 14:54:50.167 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (581)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/fe82e1985a2c498f058b472c6b6059/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:54:50.168 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:54:50.176 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:54:50.176 [Task submitter] INFO nextflow.Session - [c9/03c731] Submitted process > POREC:digest_align_annotate (582) Aug-17 14:55:32.314 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 592; name: POREC:digest_align_annotate (583); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/00fd6b01faaa0bc5062a329b6f97fe] ~> TaskHandler[id: 593; name: POREC:digest_align_annotate (584); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/f012959fe913e7dfef9a65bae00daa] ~> TaskHandler[id: 594; name: POREC:digest_align_annotate (585); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/c03089bbc491479e20854f63f9d5f8] ~> TaskHandler[id: 595; name: POREC:digest_align_annotate (586); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/3792ae68bba3d74f72bb7dbabf2973] ~> TaskHandler[id: 596; name: POREC:digest_align_annotate (587); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/2c00cae342014200dbac02a6b2d647] ~> TaskHandler[id: 597; name: POREC:digest_align_annotate (588); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/c84b20c3fbe3034bb823b40b6854de] ~> TaskHandler[id: 598; name: POREC:digest_align_annotate (589); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/81063c1b850fdd63b8c4b6476915a9] ~> TaskHandler[id: 599; name: POREC:digest_align_annotate (590); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/e3f2318263d61dd10762a313354641] ~> TaskHandler[id: 600; name: POREC:digest_align_annotate (591); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/b6b56012ae95a021db71d29c371626] ~> TaskHandler[id: 601; name: POREC:digest_align_annotate (592); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/26d4c060a8236d6f254cc5bc95a916] .. remaining tasks omitted. Aug-17 14:56:27.403 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 591; name: POREC:digest_align_annotate (582); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/03c73183433f7e53195fd86301b35c] Aug-17 14:56:27.404 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (582)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/03c73183433f7e53195fd86301b35c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:56:27.409 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:56:27.415 [Task submitter] INFO nextflow.Session - [d8/00fd6b] Submitted process > POREC:digest_align_annotate (583) Aug-17 14:56:27.416 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:58:04.925 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 592; name: POREC:digest_align_annotate (583); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/00fd6b01faaa0bc5062a329b6f97fe] Aug-17 14:58:04.927 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (583)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/00fd6b01faaa0bc5062a329b6f97fe/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:58:04.928 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:58:04.939 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:58:04.940 [Task submitter] INFO nextflow.Session - [4f/f01295] Submitted process > POREC:digest_align_annotate (584) Aug-17 14:58:40.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 593; name: POREC:digest_align_annotate (584); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/f012959fe913e7dfef9a65bae00daa] Aug-17 14:59:39.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 593; name: POREC:digest_align_annotate (584); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/f012959fe913e7dfef9a65bae00daa] Aug-17 14:59:39.885 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (584)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/f012959fe913e7dfef9a65bae00daa/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 14:59:39.886 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 14:59:39.890 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 14:59:39.956 [Task submitter] INFO nextflow.Session - [8d/c03089] Submitted process > POREC:digest_align_annotate (585) Aug-17 15:00:33.124 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 595; name: POREC:digest_align_annotate (586); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/3792ae68bba3d74f72bb7dbabf2973] ~> TaskHandler[id: 596; name: POREC:digest_align_annotate (587); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/2c00cae342014200dbac02a6b2d647] ~> TaskHandler[id: 597; name: POREC:digest_align_annotate (588); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/c84b20c3fbe3034bb823b40b6854de] ~> TaskHandler[id: 598; name: POREC:digest_align_annotate (589); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/81063c1b850fdd63b8c4b6476915a9] ~> TaskHandler[id: 599; name: POREC:digest_align_annotate (590); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/e3f2318263d61dd10762a313354641] ~> TaskHandler[id: 600; name: POREC:digest_align_annotate (591); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/b6b56012ae95a021db71d29c371626] ~> TaskHandler[id: 601; name: POREC:digest_align_annotate (592); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/26d4c060a8236d6f254cc5bc95a916] ~> TaskHandler[id: 632; name: POREC:digest_align_annotate (623); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/05a65dffa8d9300b86729e48b3d036] ~> TaskHandler[id: 602; name: POREC:digest_align_annotate (593); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/556caf2ca38f155f601485e55e622d] ~> TaskHandler[id: 603; name: POREC:digest_align_annotate (594); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/fa2066928710a194f0968739efb287] .. remaining tasks omitted. Aug-17 15:01:14.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 594; name: POREC:digest_align_annotate (585); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/c03089bbc491479e20854f63f9d5f8] Aug-17 15:01:14.544 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (585)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/c03089bbc491479e20854f63f9d5f8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:01:14.544 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:01:14.549 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:01:14.550 [Task submitter] INFO nextflow.Session - [7d/3792ae] Submitted process > POREC:digest_align_annotate (586) Aug-17 15:02:48.949 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 595; name: POREC:digest_align_annotate (586); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/3792ae68bba3d74f72bb7dbabf2973] Aug-17 15:02:48.950 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (586)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/3792ae68bba3d74f72bb7dbabf2973/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:02:48.950 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:02:48.955 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:02:48.955 [Task submitter] INFO nextflow.Session - [6b/2c00ca] Submitted process > POREC:digest_align_annotate (587) Aug-17 15:03:40.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 596; name: POREC:digest_align_annotate (587); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/2c00cae342014200dbac02a6b2d647] Aug-17 15:04:28.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 596; name: POREC:digest_align_annotate (587); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/2c00cae342014200dbac02a6b2d647] Aug-17 15:04:28.159 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (587)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/2c00cae342014200dbac02a6b2d647/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:04:28.164 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:04:28.186 [Task submitter] INFO nextflow.Session - [2d/c84b20] Submitted process > POREC:digest_align_annotate (588) Aug-17 15:04:28.186 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:05:33.384 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 598; name: POREC:digest_align_annotate (589); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/81063c1b850fdd63b8c4b6476915a9] ~> TaskHandler[id: 599; name: POREC:digest_align_annotate (590); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/e3f2318263d61dd10762a313354641] ~> TaskHandler[id: 600; name: POREC:digest_align_annotate (591); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/b6b56012ae95a021db71d29c371626] ~> TaskHandler[id: 601; name: POREC:digest_align_annotate (592); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/26d4c060a8236d6f254cc5bc95a916] ~> TaskHandler[id: 632; name: POREC:digest_align_annotate (623); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/05a65dffa8d9300b86729e48b3d036] ~> TaskHandler[id: 602; name: POREC:digest_align_annotate (593); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/556caf2ca38f155f601485e55e622d] ~> TaskHandler[id: 603; name: POREC:digest_align_annotate (594); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/fa2066928710a194f0968739efb287] ~> TaskHandler[id: 604; name: POREC:digest_align_annotate (595); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/2ad29697e8db31a1fc7f38992f336a] ~> TaskHandler[id: 605; name: POREC:digest_align_annotate (596); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/1a90c65d6f69dc991d762ef9de4cb6] ~> TaskHandler[id: 606; name: POREC:digest_align_annotate (597); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/32c290ecb41dfbc05f49ac95b050ee] .. remaining tasks omitted. Aug-17 15:05:58.968 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 597; name: POREC:digest_align_annotate (588); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/c84b20c3fbe3034bb823b40b6854de] Aug-17 15:05:58.969 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (588)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/c84b20c3fbe3034bb823b40b6854de/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:05:58.969 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:05:58.974 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:05:58.974 [Task submitter] INFO nextflow.Session - [bd/81063c] Submitted process > POREC:digest_align_annotate (589) Aug-17 15:07:34.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 598; name: POREC:digest_align_annotate (589); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/81063c1b850fdd63b8c4b6476915a9] Aug-17 15:07:34.504 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (589)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/81063c1b850fdd63b8c4b6476915a9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:07:34.504 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:07:34.509 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:07:34.509 [Task submitter] INFO nextflow.Session - [17/e3f231] Submitted process > POREC:digest_align_annotate (590) Aug-17 15:08:40.179 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 599; name: POREC:digest_align_annotate (590); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/e3f2318263d61dd10762a313354641] Aug-17 15:09:12.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 599; name: POREC:digest_align_annotate (590); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/e3f2318263d61dd10762a313354641] Aug-17 15:09:12.661 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (590)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/e3f2318263d61dd10762a313354641/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:09:12.662 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:09:12.667 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:09:12.667 [Task submitter] INFO nextflow.Session - [19/b6b560] Submitted process > POREC:digest_align_annotate (591) Aug-17 15:10:33.907 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 601; name: POREC:digest_align_annotate (592); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/26d4c060a8236d6f254cc5bc95a916] ~> TaskHandler[id: 632; name: POREC:digest_align_annotate (623); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/05a65dffa8d9300b86729e48b3d036] ~> TaskHandler[id: 602; name: POREC:digest_align_annotate (593); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/556caf2ca38f155f601485e55e622d] ~> TaskHandler[id: 603; name: POREC:digest_align_annotate (594); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/fa2066928710a194f0968739efb287] ~> TaskHandler[id: 604; name: POREC:digest_align_annotate (595); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/2ad29697e8db31a1fc7f38992f336a] ~> TaskHandler[id: 605; name: POREC:digest_align_annotate (596); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/1a90c65d6f69dc991d762ef9de4cb6] ~> TaskHandler[id: 606; name: POREC:digest_align_annotate (597); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/32c290ecb41dfbc05f49ac95b050ee] ~> TaskHandler[id: 607; name: POREC:digest_align_annotate (598); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/14a1ad29afe9500fae1244caf92c27] ~> TaskHandler[id: 608; name: POREC:digest_align_annotate (599); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/22d6ef8b6cca977e4b49eaf988e11f] ~> TaskHandler[id: 609; name: POREC:digest_align_annotate (600); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/0e74e175ef30b55eb49c373fe738e5] .. remaining tasks omitted. Aug-17 15:10:45.248 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 600; name: POREC:digest_align_annotate (591); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/b6b56012ae95a021db71d29c371626] Aug-17 15:10:45.248 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (591)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/b6b56012ae95a021db71d29c371626/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:10:45.249 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:10:45.254 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:10:45.254 [Task submitter] INFO nextflow.Session - [38/26d4c0] Submitted process > POREC:digest_align_annotate (592) Aug-17 15:12:20.365 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 601; name: POREC:digest_align_annotate (592); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/26d4c060a8236d6f254cc5bc95a916] Aug-17 15:12:20.366 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (592)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/26d4c060a8236d6f254cc5bc95a916/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:12:20.366 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:12:20.370 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:12:20.371 [Task submitter] INFO nextflow.Session - [fe/05a65d] Submitted process > POREC:digest_align_annotate (623) Aug-17 15:13:40.219 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 632; name: POREC:digest_align_annotate (623); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/05a65dffa8d9300b86729e48b3d036] Aug-17 15:13:58.916 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 632; name: POREC:digest_align_annotate (623); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/05a65dffa8d9300b86729e48b3d036] Aug-17 15:13:58.917 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (623)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/05a65dffa8d9300b86729e48b3d036/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:13:58.918 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:13:58.924 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:13:58.924 [Task submitter] INFO nextflow.Session - [3b/556caf] Submitted process > POREC:digest_align_annotate (593) Aug-17 15:15:34.211 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 603; name: POREC:digest_align_annotate (594); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/fa2066928710a194f0968739efb287] ~> TaskHandler[id: 604; name: POREC:digest_align_annotate (595); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/2ad29697e8db31a1fc7f38992f336a] ~> TaskHandler[id: 605; name: POREC:digest_align_annotate (596); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/1a90c65d6f69dc991d762ef9de4cb6] ~> TaskHandler[id: 606; name: POREC:digest_align_annotate (597); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/32c290ecb41dfbc05f49ac95b050ee] ~> TaskHandler[id: 607; name: POREC:digest_align_annotate (598); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/14a1ad29afe9500fae1244caf92c27] ~> TaskHandler[id: 608; name: POREC:digest_align_annotate (599); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/22d6ef8b6cca977e4b49eaf988e11f] ~> TaskHandler[id: 609; name: POREC:digest_align_annotate (600); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/0e74e175ef30b55eb49c373fe738e5] ~> TaskHandler[id: 611; name: POREC:digest_align_annotate (602); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/d07aea5059faf51e2960d0a50b67a1] ~> TaskHandler[id: 610; name: POREC:digest_align_annotate (601); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/43529fa0af234c4daba1e243ef2322] ~> TaskHandler[id: 612; name: POREC:digest_align_annotate (603); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/36bf7f924688dd5958b3ba27dea9d4] .. remaining tasks omitted. Aug-17 15:15:35.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 602; name: POREC:digest_align_annotate (593); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/556caf2ca38f155f601485e55e622d] Aug-17 15:15:35.422 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (593)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/556caf2ca38f155f601485e55e622d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:15:35.423 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:15:35.428 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:15:35.428 [Task submitter] INFO nextflow.Session - [b9/fa2066] Submitted process > POREC:digest_align_annotate (594) Aug-17 15:17:10.762 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 603; name: POREC:digest_align_annotate (594); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/fa2066928710a194f0968739efb287] Aug-17 15:17:10.796 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (594)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/fa2066928710a194f0968739efb287/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:17:10.796 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:17:10.801 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:17:10.801 [Task submitter] INFO nextflow.Session - [c7/2ad296] Submitted process > POREC:digest_align_annotate (595) Aug-17 15:18:40.278 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 604; name: POREC:digest_align_annotate (595); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/2ad29697e8db31a1fc7f38992f336a] Aug-17 15:19:00.059 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 604; name: POREC:digest_align_annotate (595); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/2ad29697e8db31a1fc7f38992f336a] Aug-17 15:19:00.060 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (595)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/2ad29697e8db31a1fc7f38992f336a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:19:00.061 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:19:00.065 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:19:00.065 [Task submitter] INFO nextflow.Session - [37/1a90c6] Submitted process > POREC:digest_align_annotate (596) Aug-17 15:20:34.350 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 606; name: POREC:digest_align_annotate (597); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/32c290ecb41dfbc05f49ac95b050ee] ~> TaskHandler[id: 607; name: POREC:digest_align_annotate (598); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/14a1ad29afe9500fae1244caf92c27] ~> TaskHandler[id: 608; name: POREC:digest_align_annotate (599); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/22d6ef8b6cca977e4b49eaf988e11f] ~> TaskHandler[id: 609; name: POREC:digest_align_annotate (600); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/0e74e175ef30b55eb49c373fe738e5] ~> TaskHandler[id: 611; name: POREC:digest_align_annotate (602); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/d07aea5059faf51e2960d0a50b67a1] ~> TaskHandler[id: 610; name: POREC:digest_align_annotate (601); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/43529fa0af234c4daba1e243ef2322] ~> TaskHandler[id: 612; name: POREC:digest_align_annotate (603); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/36bf7f924688dd5958b3ba27dea9d4] ~> TaskHandler[id: 613; name: POREC:digest_align_annotate (604); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/a4516f97bfa0202d06dd88b8dcb5cd] ~> TaskHandler[id: 614; name: POREC:digest_align_annotate (605); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/7901c4d6d5c981309bd7938ca246ad] ~> TaskHandler[id: 616; name: POREC:digest_align_annotate (607); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/20ac803beb875e952969ff1ac2c708] .. remaining tasks omitted. Aug-17 15:20:38.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 605; name: POREC:digest_align_annotate (596); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/1a90c65d6f69dc991d762ef9de4cb6] Aug-17 15:20:38.785 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (596)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/1a90c65d6f69dc991d762ef9de4cb6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:20:38.791 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:20:38.814 [Task submitter] INFO nextflow.Session - [9d/32c290] Submitted process > POREC:digest_align_annotate (597) Aug-17 15:20:38.815 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:22:16.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 606; name: POREC:digest_align_annotate (597); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/32c290ecb41dfbc05f49ac95b050ee] Aug-17 15:22:16.636 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (597)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/32c290ecb41dfbc05f49ac95b050ee/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:22:16.637 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:22:16.642 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:22:16.642 [Task submitter] INFO nextflow.Session - [6c/14a1ad] Submitted process > POREC:digest_align_annotate (598) Aug-17 15:23:40.339 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 607; name: POREC:digest_align_annotate (598); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/14a1ad29afe9500fae1244caf92c27] Aug-17 15:23:53.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 607; name: POREC:digest_align_annotate (598); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/14a1ad29afe9500fae1244caf92c27] Aug-17 15:23:53.045 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (598)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/14a1ad29afe9500fae1244caf92c27/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:23:53.045 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:23:53.053 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:23:53.054 [Task submitter] INFO nextflow.Session - [18/22d6ef] Submitted process > POREC:digest_align_annotate (599) Aug-17 15:25:22.519 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 608; name: POREC:digest_align_annotate (599); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/22d6ef8b6cca977e4b49eaf988e11f] Aug-17 15:25:22.520 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (599)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/22d6ef8b6cca977e4b49eaf988e11f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:25:22.521 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:25:22.526 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:25:22.550 [Task submitter] INFO nextflow.Session - [2f/0e74e1] Submitted process > POREC:digest_align_annotate (600) Aug-17 15:25:34.593 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 611; name: POREC:digest_align_annotate (602); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/d07aea5059faf51e2960d0a50b67a1] ~> TaskHandler[id: 610; name: POREC:digest_align_annotate (601); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/43529fa0af234c4daba1e243ef2322] ~> TaskHandler[id: 612; name: POREC:digest_align_annotate (603); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/36bf7f924688dd5958b3ba27dea9d4] ~> TaskHandler[id: 613; name: POREC:digest_align_annotate (604); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/a4516f97bfa0202d06dd88b8dcb5cd] ~> TaskHandler[id: 614; name: POREC:digest_align_annotate (605); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/7901c4d6d5c981309bd7938ca246ad] ~> TaskHandler[id: 616; name: POREC:digest_align_annotate (607); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/20ac803beb875e952969ff1ac2c708] ~> TaskHandler[id: 646; name: POREC:digest_align_annotate (637); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/a6dc003534300adaa626a04f2bf487] ~> TaskHandler[id: 617; name: POREC:digest_align_annotate (608); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/2f844f4e3226b722a4357057398fca] ~> TaskHandler[id: 618; name: POREC:digest_align_annotate (609); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/c736b8b0747cf308d4624122552b41] ~> TaskHandler[id: 649; name: POREC:digest_align_annotate (640); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7a22fb9acf14610d44959434a8b8ae] .. remaining tasks omitted. Aug-17 15:26:53.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 609; name: POREC:digest_align_annotate (600); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/0e74e175ef30b55eb49c373fe738e5] Aug-17 15:26:53.216 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (600)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/0e74e175ef30b55eb49c373fe738e5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:26:53.217 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:26:53.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:26:53.222 [Task submitter] INFO nextflow.Session - [7c/d07aea] Submitted process > POREC:digest_align_annotate (602) Aug-17 15:28:31.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 611; name: POREC:digest_align_annotate (602); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/d07aea5059faf51e2960d0a50b67a1] Aug-17 15:28:31.973 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (602)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/d07aea5059faf51e2960d0a50b67a1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:28:31.973 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:28:31.978 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:28:31.985 [Task submitter] INFO nextflow.Session - [57/43529f] Submitted process > POREC:digest_align_annotate (601) Aug-17 15:28:40.383 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 610; name: POREC:digest_align_annotate (601); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/43529fa0af234c4daba1e243ef2322] Aug-17 15:30:04.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 610; name: POREC:digest_align_annotate (601); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/43529fa0af234c4daba1e243ef2322] Aug-17 15:30:04.852 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (601)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/43529fa0af234c4daba1e243ef2322/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:30:04.853 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:30:04.858 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:30:04.858 [Task submitter] INFO nextflow.Session - [10/36bf7f] Submitted process > POREC:digest_align_annotate (603) Aug-17 15:30:34.955 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 613; name: POREC:digest_align_annotate (604); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/a4516f97bfa0202d06dd88b8dcb5cd] ~> TaskHandler[id: 614; name: POREC:digest_align_annotate (605); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/7901c4d6d5c981309bd7938ca246ad] ~> TaskHandler[id: 616; name: POREC:digest_align_annotate (607); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/20ac803beb875e952969ff1ac2c708] ~> TaskHandler[id: 646; name: POREC:digest_align_annotate (637); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/a6dc003534300adaa626a04f2bf487] ~> TaskHandler[id: 617; name: POREC:digest_align_annotate (608); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/2f844f4e3226b722a4357057398fca] ~> TaskHandler[id: 618; name: POREC:digest_align_annotate (609); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/c736b8b0747cf308d4624122552b41] ~> TaskHandler[id: 649; name: POREC:digest_align_annotate (640); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7a22fb9acf14610d44959434a8b8ae] ~> TaskHandler[id: 619; name: POREC:digest_align_annotate (610); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/93e7751a14dbee82aa36f79101f981] ~> TaskHandler[id: 620; name: POREC:digest_align_annotate (611); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/8f41b94ff96fe3852bc69dd48c2e79] ~> TaskHandler[id: 621; name: POREC:digest_align_annotate (612); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/4210272b089babe086b6787d2a58ae] .. remaining tasks omitted. Aug-17 15:32:08.517 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 612; name: POREC:digest_align_annotate (603); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/36bf7f924688dd5958b3ba27dea9d4] Aug-17 15:32:08.532 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (603)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/36bf7f924688dd5958b3ba27dea9d4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:32:08.533 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:32:08.570 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:32:08.570 [Task submitter] INFO nextflow.Session - [ef/a4516f] Submitted process > POREC:digest_align_annotate (604) Aug-17 15:33:40.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 613; name: POREC:digest_align_annotate (604); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/a4516f97bfa0202d06dd88b8dcb5cd] Aug-17 15:33:45.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 613; name: POREC:digest_align_annotate (604); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/a4516f97bfa0202d06dd88b8dcb5cd] Aug-17 15:33:45.361 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (604)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/a4516f97bfa0202d06dd88b8dcb5cd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:33:45.362 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:33:45.403 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:33:45.403 [Task submitter] INFO nextflow.Session - [a9/7901c4] Submitted process > POREC:digest_align_annotate (605) Aug-17 15:35:16.874 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 614; name: POREC:digest_align_annotate (605); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/7901c4d6d5c981309bd7938ca246ad] Aug-17 15:35:16.875 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (605)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/7901c4d6d5c981309bd7938ca246ad/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:35:16.875 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:35:16.881 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:35:16.881 [Task submitter] INFO nextflow.Session - [29/20ac80] Submitted process > POREC:digest_align_annotate (607) Aug-17 15:35:35.953 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 646; name: POREC:digest_align_annotate (637); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/a6dc003534300adaa626a04f2bf487] ~> TaskHandler[id: 617; name: POREC:digest_align_annotate (608); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/2f844f4e3226b722a4357057398fca] ~> TaskHandler[id: 618; name: POREC:digest_align_annotate (609); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/c736b8b0747cf308d4624122552b41] ~> TaskHandler[id: 649; name: POREC:digest_align_annotate (640); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7a22fb9acf14610d44959434a8b8ae] ~> TaskHandler[id: 619; name: POREC:digest_align_annotate (610); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/93e7751a14dbee82aa36f79101f981] ~> TaskHandler[id: 620; name: POREC:digest_align_annotate (611); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/8f41b94ff96fe3852bc69dd48c2e79] ~> TaskHandler[id: 621; name: POREC:digest_align_annotate (612); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/4210272b089babe086b6787d2a58ae] ~> TaskHandler[id: 622; name: POREC:digest_align_annotate (613); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/222dbc1e0edbe3a58a65a38a17ae53] ~> TaskHandler[id: 623; name: POREC:digest_align_annotate (614); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/aea76af08ddde9325d1fe93533c83c] ~> TaskHandler[id: 624; name: POREC:digest_align_annotate (615); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/fef58ed27a1deb866071fb30354c1e] .. remaining tasks omitted. Aug-17 15:36:58.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 616; name: POREC:digest_align_annotate (607); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/20ac803beb875e952969ff1ac2c708] Aug-17 15:36:58.712 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (607)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/20ac803beb875e952969ff1ac2c708/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:36:58.713 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:36:58.726 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:36:58.726 [Task submitter] INFO nextflow.Session - [36/a6dc00] Submitted process > POREC:digest_align_annotate (637) Aug-17 15:38:37.531 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 646; name: POREC:digest_align_annotate (637); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/a6dc003534300adaa626a04f2bf487] Aug-17 15:38:37.533 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (637)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/a6dc003534300adaa626a04f2bf487/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:38:37.534 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:38:37.539 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:38:37.539 [Task submitter] INFO nextflow.Session - [14/2f844f] Submitted process > POREC:digest_align_annotate (608) Aug-17 15:38:40.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 617; name: POREC:digest_align_annotate (608); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/2f844f4e3226b722a4357057398fca] Aug-17 15:40:16.464 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 617; name: POREC:digest_align_annotate (608); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/2f844f4e3226b722a4357057398fca] Aug-17 15:40:16.484 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (608)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/2f844f4e3226b722a4357057398fca/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:40:16.485 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:40:16.490 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:40:16.490 [Task submitter] INFO nextflow.Session - [11/c736b8] Submitted process > POREC:digest_align_annotate (609) Aug-17 15:40:36.556 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 649; name: POREC:digest_align_annotate (640); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7a22fb9acf14610d44959434a8b8ae] ~> TaskHandler[id: 619; name: POREC:digest_align_annotate (610); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/93e7751a14dbee82aa36f79101f981] ~> TaskHandler[id: 620; name: POREC:digest_align_annotate (611); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/8f41b94ff96fe3852bc69dd48c2e79] ~> TaskHandler[id: 621; name: POREC:digest_align_annotate (612); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/4210272b089babe086b6787d2a58ae] ~> TaskHandler[id: 622; name: POREC:digest_align_annotate (613); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/222dbc1e0edbe3a58a65a38a17ae53] ~> TaskHandler[id: 623; name: POREC:digest_align_annotate (614); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/aea76af08ddde9325d1fe93533c83c] ~> TaskHandler[id: 624; name: POREC:digest_align_annotate (615); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/fef58ed27a1deb866071fb30354c1e] ~> TaskHandler[id: 625; name: POREC:digest_align_annotate (616); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2e37aa6de05f16af1afefdec4320b0] ~> TaskHandler[id: 626; name: POREC:digest_align_annotate (617); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f9467e2221ac8c4807bace8f94f254] ~> TaskHandler[id: 658; name: POREC:digest_align_annotate (649); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/78386cb33017fa3a0ba799b8f7c20f] .. remaining tasks omitted. Aug-17 15:41:54.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 618; name: POREC:digest_align_annotate (609); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/c736b8b0747cf308d4624122552b41] Aug-17 15:41:54.704 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (609)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/c736b8b0747cf308d4624122552b41/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:41:54.705 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:41:54.747 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:41:54.759 [Task submitter] INFO nextflow.Session - [92/7a22fb] Submitted process > POREC:digest_align_annotate (640) Aug-17 15:43:29.045 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 649; name: POREC:digest_align_annotate (640); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7a22fb9acf14610d44959434a8b8ae] Aug-17 15:43:29.046 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (640)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7a22fb9acf14610d44959434a8b8ae/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:43:29.046 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:43:29.061 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:43:29.061 [Task submitter] INFO nextflow.Session - [75/93e775] Submitted process > POREC:digest_align_annotate (610) Aug-17 15:43:40.556 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 619; name: POREC:digest_align_annotate (610); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/93e7751a14dbee82aa36f79101f981] Aug-17 15:45:06.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 619; name: POREC:digest_align_annotate (610); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/93e7751a14dbee82aa36f79101f981] Aug-17 15:45:06.401 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (610)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/93e7751a14dbee82aa36f79101f981/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:45:06.401 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:45:06.406 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:45:06.406 [Task submitter] INFO nextflow.Session - [a5/8f41b9] Submitted process > POREC:digest_align_annotate (611) Aug-17 15:45:37.511 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 621; name: POREC:digest_align_annotate (612); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/4210272b089babe086b6787d2a58ae] ~> TaskHandler[id: 622; name: POREC:digest_align_annotate (613); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/222dbc1e0edbe3a58a65a38a17ae53] ~> TaskHandler[id: 623; name: POREC:digest_align_annotate (614); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/aea76af08ddde9325d1fe93533c83c] ~> TaskHandler[id: 624; name: POREC:digest_align_annotate (615); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/fef58ed27a1deb866071fb30354c1e] ~> TaskHandler[id: 625; name: POREC:digest_align_annotate (616); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2e37aa6de05f16af1afefdec4320b0] ~> TaskHandler[id: 626; name: POREC:digest_align_annotate (617); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f9467e2221ac8c4807bace8f94f254] ~> TaskHandler[id: 658; name: POREC:digest_align_annotate (649); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/78386cb33017fa3a0ba799b8f7c20f] ~> TaskHandler[id: 627; name: POREC:digest_align_annotate (618); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/34758ea0f5460d069d33a75f5e4335] ~> TaskHandler[id: 628; name: POREC:digest_align_annotate (619); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/4a7e60f58845b403858c7f3b94d2f4] ~> TaskHandler[id: 630; name: POREC:digest_align_annotate (621); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/aa1ebfdee056f35b184553e648f5a5] .. remaining tasks omitted. Aug-17 15:46:43.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 620; name: POREC:digest_align_annotate (611); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/8f41b94ff96fe3852bc69dd48c2e79] Aug-17 15:46:43.091 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (611)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/8f41b94ff96fe3852bc69dd48c2e79/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:46:43.092 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:46:43.096 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:46:43.096 [Task submitter] INFO nextflow.Session - [29/421027] Submitted process > POREC:digest_align_annotate (612) Aug-17 15:48:31.396 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 621; name: POREC:digest_align_annotate (612); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/4210272b089babe086b6787d2a58ae] Aug-17 15:48:31.397 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (612)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/4210272b089babe086b6787d2a58ae/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:48:31.398 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:48:31.403 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:48:31.404 [Task submitter] INFO nextflow.Session - [bd/222dbc] Submitted process > POREC:digest_align_annotate (613) Aug-17 15:48:40.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 622; name: POREC:digest_align_annotate (613); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/222dbc1e0edbe3a58a65a38a17ae53] Aug-17 15:50:22.170 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 622; name: POREC:digest_align_annotate (613); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/222dbc1e0edbe3a58a65a38a17ae53] Aug-17 15:50:22.171 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (613)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/222dbc1e0edbe3a58a65a38a17ae53/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:50:22.172 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:50:22.176 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:50:22.191 [Task submitter] INFO nextflow.Session - [aa/aea76a] Submitted process > POREC:digest_align_annotate (614) Aug-17 15:50:38.252 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 624; name: POREC:digest_align_annotate (615); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/fef58ed27a1deb866071fb30354c1e] ~> TaskHandler[id: 625; name: POREC:digest_align_annotate (616); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2e37aa6de05f16af1afefdec4320b0] ~> TaskHandler[id: 626; name: POREC:digest_align_annotate (617); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f9467e2221ac8c4807bace8f94f254] ~> TaskHandler[id: 658; name: POREC:digest_align_annotate (649); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/78386cb33017fa3a0ba799b8f7c20f] ~> TaskHandler[id: 627; name: POREC:digest_align_annotate (618); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/34758ea0f5460d069d33a75f5e4335] ~> TaskHandler[id: 628; name: POREC:digest_align_annotate (619); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/4a7e60f58845b403858c7f3b94d2f4] ~> TaskHandler[id: 630; name: POREC:digest_align_annotate (621); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/aa1ebfdee056f35b184553e648f5a5] ~> TaskHandler[id: 629; name: POREC:digest_align_annotate (620); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/1342d53b50eecd35822f471cb33517] ~> TaskHandler[id: 631; name: POREC:digest_align_annotate (622); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be537e17341fdda39ac6db81da4318] ~> TaskHandler[id: 633; name: POREC:digest_align_annotate (624); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/ee44009455e8f31c6ea61ca0173bc2] .. remaining tasks omitted. Aug-17 15:52:09.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 623; name: POREC:digest_align_annotate (614); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/aea76af08ddde9325d1fe93533c83c] Aug-17 15:52:09.433 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (614)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/aea76af08ddde9325d1fe93533c83c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:52:09.434 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:52:09.438 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:52:09.438 [Task submitter] INFO nextflow.Session - [c8/fef58e] Submitted process > POREC:digest_align_annotate (615) Aug-17 15:53:40.649 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 624; name: POREC:digest_align_annotate (615); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/fef58ed27a1deb866071fb30354c1e] Aug-17 15:53:57.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 624; name: POREC:digest_align_annotate (615); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/fef58ed27a1deb866071fb30354c1e] Aug-17 15:53:57.290 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (615)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/fef58ed27a1deb866071fb30354c1e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:53:57.291 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:53:57.304 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:53:57.304 [Task submitter] INFO nextflow.Session - [5b/2e37aa] Submitted process > POREC:digest_align_annotate (616) Aug-17 15:55:38.608 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 626; name: POREC:digest_align_annotate (617); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f9467e2221ac8c4807bace8f94f254] ~> TaskHandler[id: 658; name: POREC:digest_align_annotate (649); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/78386cb33017fa3a0ba799b8f7c20f] ~> TaskHandler[id: 627; name: POREC:digest_align_annotate (618); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/34758ea0f5460d069d33a75f5e4335] ~> TaskHandler[id: 628; name: POREC:digest_align_annotate (619); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/4a7e60f58845b403858c7f3b94d2f4] ~> TaskHandler[id: 630; name: POREC:digest_align_annotate (621); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/aa1ebfdee056f35b184553e648f5a5] ~> TaskHandler[id: 629; name: POREC:digest_align_annotate (620); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/1342d53b50eecd35822f471cb33517] ~> TaskHandler[id: 631; name: POREC:digest_align_annotate (622); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be537e17341fdda39ac6db81da4318] ~> TaskHandler[id: 633; name: POREC:digest_align_annotate (624); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/ee44009455e8f31c6ea61ca0173bc2] ~> TaskHandler[id: 666; name: POREC:digest_align_annotate (657); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/5968236531b79b8a19215eb5d3d055] ~> TaskHandler[id: 634; name: POREC:digest_align_annotate (625); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/8c92b0d73dd035690541287f3acf98] .. remaining tasks omitted. Aug-17 15:55:44.243 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 625; name: POREC:digest_align_annotate (616); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2e37aa6de05f16af1afefdec4320b0] Aug-17 15:55:44.244 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (616)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/2e37aa6de05f16af1afefdec4320b0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:55:44.244 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:55:44.249 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:55:44.249 [Task submitter] INFO nextflow.Session - [85/f9467e] Submitted process > POREC:digest_align_annotate (617) Aug-17 15:57:28.866 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 626; name: POREC:digest_align_annotate (617); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f9467e2221ac8c4807bace8f94f254] Aug-17 15:57:28.866 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (617)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/85/f9467e2221ac8c4807bace8f94f254/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:57:28.867 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:57:28.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:57:28.871 [Task submitter] INFO nextflow.Session - [5f/78386c] Submitted process > POREC:digest_align_annotate (649) Aug-17 15:58:40.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 658; name: POREC:digest_align_annotate (649); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/78386cb33017fa3a0ba799b8f7c20f] Aug-17 15:59:15.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 658; name: POREC:digest_align_annotate (649); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/78386cb33017fa3a0ba799b8f7c20f] Aug-17 15:59:15.674 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (649)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/78386cb33017fa3a0ba799b8f7c20f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 15:59:15.675 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 15:59:15.679 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 15:59:15.679 [Task submitter] INFO nextflow.Session - [81/34758e] Submitted process > POREC:digest_align_annotate (618) Aug-17 16:00:38.936 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 628; name: POREC:digest_align_annotate (619); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/4a7e60f58845b403858c7f3b94d2f4] ~> TaskHandler[id: 630; name: POREC:digest_align_annotate (621); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/aa1ebfdee056f35b184553e648f5a5] ~> TaskHandler[id: 629; name: POREC:digest_align_annotate (620); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/1342d53b50eecd35822f471cb33517] ~> TaskHandler[id: 631; name: POREC:digest_align_annotate (622); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be537e17341fdda39ac6db81da4318] ~> TaskHandler[id: 633; name: POREC:digest_align_annotate (624); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/ee44009455e8f31c6ea61ca0173bc2] ~> TaskHandler[id: 666; name: POREC:digest_align_annotate (657); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/5968236531b79b8a19215eb5d3d055] ~> TaskHandler[id: 634; name: POREC:digest_align_annotate (625); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/8c92b0d73dd035690541287f3acf98] ~> TaskHandler[id: 635; name: POREC:digest_align_annotate (626); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/2c0c6425778d61b2e066091021bfb5] ~> TaskHandler[id: 636; name: POREC:digest_align_annotate (627); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/ea066bd3879a4aa1ceb22a465c494a] ~> TaskHandler[id: 637; name: POREC:digest_align_annotate (628); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/203cb170981f22ed927b3ea92885e0] .. remaining tasks omitted. Aug-17 16:01:04.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 627; name: POREC:digest_align_annotate (618); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/34758ea0f5460d069d33a75f5e4335] Aug-17 16:01:04.018 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (618)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/34758ea0f5460d069d33a75f5e4335/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:01:04.018 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:01:04.024 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:01:04.024 [Task submitter] INFO nextflow.Session - [7b/4a7e60] Submitted process > POREC:digest_align_annotate (619) Aug-17 16:02:56.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 628; name: POREC:digest_align_annotate (619); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/4a7e60f58845b403858c7f3b94d2f4] Aug-17 16:02:56.319 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (619)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/4a7e60f58845b403858c7f3b94d2f4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:02:56.319 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:02:56.324 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:02:56.324 [Task submitter] INFO nextflow.Session - [48/aa1ebf] Submitted process > POREC:digest_align_annotate (621) Aug-17 16:03:40.676 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 630; name: POREC:digest_align_annotate (621); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/aa1ebfdee056f35b184553e648f5a5] Aug-17 16:04:42.503 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 630; name: POREC:digest_align_annotate (621); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/aa1ebfdee056f35b184553e648f5a5] Aug-17 16:04:42.503 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (621)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/aa1ebfdee056f35b184553e648f5a5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:04:42.504 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:04:42.509 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:04:42.510 [Task submitter] INFO nextflow.Session - [75/1342d5] Submitted process > POREC:digest_align_annotate (620) Aug-17 16:05:39.698 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 631; name: POREC:digest_align_annotate (622); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be537e17341fdda39ac6db81da4318] ~> TaskHandler[id: 633; name: POREC:digest_align_annotate (624); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/ee44009455e8f31c6ea61ca0173bc2] ~> TaskHandler[id: 666; name: POREC:digest_align_annotate (657); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/5968236531b79b8a19215eb5d3d055] ~> TaskHandler[id: 634; name: POREC:digest_align_annotate (625); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/8c92b0d73dd035690541287f3acf98] ~> TaskHandler[id: 635; name: POREC:digest_align_annotate (626); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/2c0c6425778d61b2e066091021bfb5] ~> TaskHandler[id: 636; name: POREC:digest_align_annotate (627); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/ea066bd3879a4aa1ceb22a465c494a] ~> TaskHandler[id: 637; name: POREC:digest_align_annotate (628); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/203cb170981f22ed927b3ea92885e0] ~> TaskHandler[id: 638; name: POREC:digest_align_annotate (629); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/c53e63d3275fd8f586fd9c1bddf7fd] ~> TaskHandler[id: 639; name: POREC:digest_align_annotate (630); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6ed5518c9584723c2f59a08b3d410c] ~> TaskHandler[id: 640; name: POREC:digest_align_annotate (631); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/98e3e51b126c048995d34034fca048] .. remaining tasks omitted. Aug-17 16:06:16.441 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 629; name: POREC:digest_align_annotate (620); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/1342d53b50eecd35822f471cb33517] Aug-17 16:06:16.441 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (620)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/1342d53b50eecd35822f471cb33517/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:06:16.442 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:06:16.520 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:06:16.520 [Task submitter] INFO nextflow.Session - [91/be537e] Submitted process > POREC:digest_align_annotate (622) Aug-17 16:07:50.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 631; name: POREC:digest_align_annotate (622); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be537e17341fdda39ac6db81da4318] Aug-17 16:07:50.949 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (622)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/be537e17341fdda39ac6db81da4318/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:07:50.949 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:07:50.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:07:50.974 [Task submitter] INFO nextflow.Session - [e6/ee4400] Submitted process > POREC:digest_align_annotate (624) Aug-17 16:08:40.703 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 633; name: POREC:digest_align_annotate (624); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/ee44009455e8f31c6ea61ca0173bc2] Aug-17 16:09:26.713 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 633; name: POREC:digest_align_annotate (624); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/ee44009455e8f31c6ea61ca0173bc2] Aug-17 16:09:26.713 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (624)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/ee44009455e8f31c6ea61ca0173bc2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:09:26.713 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:09:26.731 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:09:26.731 [Task submitter] INFO nextflow.Session - [ad/596823] Submitted process > POREC:digest_align_annotate (657) Aug-17 16:10:39.953 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 634; name: POREC:digest_align_annotate (625); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/8c92b0d73dd035690541287f3acf98] ~> TaskHandler[id: 635; name: POREC:digest_align_annotate (626); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/2c0c6425778d61b2e066091021bfb5] ~> TaskHandler[id: 636; name: POREC:digest_align_annotate (627); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/ea066bd3879a4aa1ceb22a465c494a] ~> TaskHandler[id: 637; name: POREC:digest_align_annotate (628); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/203cb170981f22ed927b3ea92885e0] ~> TaskHandler[id: 638; name: POREC:digest_align_annotate (629); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/c53e63d3275fd8f586fd9c1bddf7fd] ~> TaskHandler[id: 639; name: POREC:digest_align_annotate (630); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6ed5518c9584723c2f59a08b3d410c] ~> TaskHandler[id: 640; name: POREC:digest_align_annotate (631); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/98e3e51b126c048995d34034fca048] ~> TaskHandler[id: 642; name: POREC:digest_align_annotate (633); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/9103dfdc83632e4dad1a04f70e2d1c] ~> TaskHandler[id: 641; name: POREC:digest_align_annotate (632); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/2f26cf77ccbfdc4d40e7c59f792b09] ~> TaskHandler[id: 643; name: POREC:digest_align_annotate (634); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/2e43804f43bd1463d058d9074b0cc5] .. remaining tasks omitted. Aug-17 16:11:04.464 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 666; name: POREC:digest_align_annotate (657); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/5968236531b79b8a19215eb5d3d055] Aug-17 16:11:04.467 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (657)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/5968236531b79b8a19215eb5d3d055/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:11:04.468 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:11:04.473 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:11:04.473 [Task submitter] INFO nextflow.Session - [cd/8c92b0] Submitted process > POREC:digest_align_annotate (625) Aug-17 16:12:39.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 634; name: POREC:digest_align_annotate (625); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/8c92b0d73dd035690541287f3acf98] Aug-17 16:12:39.327 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (625)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/8c92b0d73dd035690541287f3acf98/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:12:39.327 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:12:39.340 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:12:39.340 [Task submitter] INFO nextflow.Session - [ee/2c0c64] Submitted process > POREC:digest_align_annotate (626) Aug-17 16:13:40.718 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 635; name: POREC:digest_align_annotate (626); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/2c0c6425778d61b2e066091021bfb5] Aug-17 16:14:14.929 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 635; name: POREC:digest_align_annotate (626); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/2c0c6425778d61b2e066091021bfb5] Aug-17 16:14:14.930 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (626)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/2c0c6425778d61b2e066091021bfb5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:14:14.931 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:14:14.935 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:14:14.935 [Task submitter] INFO nextflow.Session - [74/ea066b] Submitted process > POREC:digest_align_annotate (627) Aug-17 16:15:40.181 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 637; name: POREC:digest_align_annotate (628); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/203cb170981f22ed927b3ea92885e0] ~> TaskHandler[id: 638; name: POREC:digest_align_annotate (629); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/c53e63d3275fd8f586fd9c1bddf7fd] ~> TaskHandler[id: 639; name: POREC:digest_align_annotate (630); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6ed5518c9584723c2f59a08b3d410c] ~> TaskHandler[id: 640; name: POREC:digest_align_annotate (631); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/98e3e51b126c048995d34034fca048] ~> TaskHandler[id: 642; name: POREC:digest_align_annotate (633); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/9103dfdc83632e4dad1a04f70e2d1c] ~> TaskHandler[id: 641; name: POREC:digest_align_annotate (632); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/2f26cf77ccbfdc4d40e7c59f792b09] ~> TaskHandler[id: 643; name: POREC:digest_align_annotate (634); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/2e43804f43bd1463d058d9074b0cc5] ~> TaskHandler[id: 644; name: POREC:digest_align_annotate (635); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/77d69eb8bd3485ca399775a488fa7d] ~> TaskHandler[id: 645; name: POREC:digest_align_annotate (636); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/4ecb6d6dbb7470000252e8aa2ba477] ~> TaskHandler[id: 648; name: POREC:digest_align_annotate (639); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/afef8bf52973b5bc24df0fa0e20f4d] .. remaining tasks omitted. Aug-17 16:15:56.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 636; name: POREC:digest_align_annotate (627); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/ea066bd3879a4aa1ceb22a465c494a] Aug-17 16:15:56.270 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (627)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/ea066bd3879a4aa1ceb22a465c494a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:15:56.270 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:15:56.274 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:15:56.274 [Task submitter] INFO nextflow.Session - [a8/203cb1] Submitted process > POREC:digest_align_annotate (628) Aug-17 16:17:32.274 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 637; name: POREC:digest_align_annotate (628); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/203cb170981f22ed927b3ea92885e0] Aug-17 16:17:32.276 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (628)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/203cb170981f22ed927b3ea92885e0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:17:32.278 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:17:32.306 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:17:32.308 [Task submitter] INFO nextflow.Session - [86/c53e63] Submitted process > POREC:digest_align_annotate (629) Aug-17 16:18:40.790 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 638; name: POREC:digest_align_annotate (629); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/c53e63d3275fd8f586fd9c1bddf7fd] Aug-17 16:19:05.945 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 638; name: POREC:digest_align_annotate (629); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/c53e63d3275fd8f586fd9c1bddf7fd] Aug-17 16:19:05.976 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (629)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/c53e63d3275fd8f586fd9c1bddf7fd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:19:05.980 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:19:05.984 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:19:05.984 [Task submitter] INFO nextflow.Session - [ae/6ed551] Submitted process > POREC:digest_align_annotate (630) Aug-17 16:20:39.629 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 639; name: POREC:digest_align_annotate (630); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6ed5518c9584723c2f59a08b3d410c] Aug-17 16:20:39.632 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (630)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/6ed5518c9584723c2f59a08b3d410c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:20:39.635 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:20:39.648 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:20:39.648 [Task submitter] INFO nextflow.Session - [07/98e3e5] Submitted process > POREC:digest_align_annotate (631) Aug-17 16:20:40.657 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 642; name: POREC:digest_align_annotate (633); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/9103dfdc83632e4dad1a04f70e2d1c] ~> TaskHandler[id: 641; name: POREC:digest_align_annotate (632); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/2f26cf77ccbfdc4d40e7c59f792b09] ~> TaskHandler[id: 643; name: POREC:digest_align_annotate (634); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/2e43804f43bd1463d058d9074b0cc5] ~> TaskHandler[id: 644; name: POREC:digest_align_annotate (635); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/77d69eb8bd3485ca399775a488fa7d] ~> TaskHandler[id: 645; name: POREC:digest_align_annotate (636); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/4ecb6d6dbb7470000252e8aa2ba477] ~> TaskHandler[id: 648; name: POREC:digest_align_annotate (639); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/afef8bf52973b5bc24df0fa0e20f4d] ~> TaskHandler[id: 647; name: POREC:digest_align_annotate (638); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/3300e69578d3d79a0c688019d9da9f] ~> TaskHandler[id: 650; name: POREC:digest_align_annotate (641); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7bff69df241362e1454023d965f840] ~> TaskHandler[id: 651; name: POREC:digest_align_annotate (642); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/53d84336c484e605acc14f6334394c] ~> TaskHandler[id: 654; name: POREC:digest_align_annotate (645); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f8d66a9b32ae3cf13ca3c3fc595748] .. remaining tasks omitted. Aug-17 16:22:12.147 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 640; name: POREC:digest_align_annotate (631); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/98e3e51b126c048995d34034fca048] Aug-17 16:22:12.148 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (631)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/98e3e51b126c048995d34034fca048/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:22:12.149 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:22:12.152 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:22:12.152 [Task submitter] INFO nextflow.Session - [29/9103df] Submitted process > POREC:digest_align_annotate (633) Aug-17 16:23:40.855 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 642; name: POREC:digest_align_annotate (633); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/9103dfdc83632e4dad1a04f70e2d1c] Aug-17 16:23:51.495 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 642; name: POREC:digest_align_annotate (633); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/9103dfdc83632e4dad1a04f70e2d1c] Aug-17 16:23:51.496 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (633)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/9103dfdc83632e4dad1a04f70e2d1c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:23:51.497 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:23:51.503 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:23:51.503 [Task submitter] INFO nextflow.Session - [15/2f26cf] Submitted process > POREC:digest_align_annotate (632) Aug-17 16:25:38.235 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 641; name: POREC:digest_align_annotate (632); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/2f26cf77ccbfdc4d40e7c59f792b09] Aug-17 16:25:38.237 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (632)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/2f26cf77ccbfdc4d40e7c59f792b09/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:25:38.239 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:25:38.261 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:25:38.261 [Task submitter] INFO nextflow.Session - [58/2e4380] Submitted process > POREC:digest_align_annotate (634) Aug-17 16:25:41.279 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 644; name: POREC:digest_align_annotate (635); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/77d69eb8bd3485ca399775a488fa7d] ~> TaskHandler[id: 645; name: POREC:digest_align_annotate (636); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/4ecb6d6dbb7470000252e8aa2ba477] ~> TaskHandler[id: 648; name: POREC:digest_align_annotate (639); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/afef8bf52973b5bc24df0fa0e20f4d] ~> TaskHandler[id: 647; name: POREC:digest_align_annotate (638); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/3300e69578d3d79a0c688019d9da9f] ~> TaskHandler[id: 650; name: POREC:digest_align_annotate (641); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7bff69df241362e1454023d965f840] ~> TaskHandler[id: 651; name: POREC:digest_align_annotate (642); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/53d84336c484e605acc14f6334394c] ~> TaskHandler[id: 654; name: POREC:digest_align_annotate (645); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f8d66a9b32ae3cf13ca3c3fc595748] ~> TaskHandler[id: 653; name: POREC:digest_align_annotate (644); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/e52a20500e786a3f21009afd1911af] ~> TaskHandler[id: 655; name: POREC:digest_align_annotate (646); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2b853414b14f3fc0352e90e820ff40] ~> TaskHandler[id: 656; name: POREC:digest_align_annotate (647); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/844f2c3c5a1a6aaa8f800791806211] .. remaining tasks omitted. Aug-17 16:27:27.335 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 643; name: POREC:digest_align_annotate (634); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/2e43804f43bd1463d058d9074b0cc5] Aug-17 16:27:27.336 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (634)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/2e43804f43bd1463d058d9074b0cc5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:27:27.337 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:27:27.345 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:27:27.345 [Task submitter] INFO nextflow.Session - [52/77d69e] Submitted process > POREC:digest_align_annotate (635) Aug-17 16:28:40.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 644; name: POREC:digest_align_annotate (635); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/77d69eb8bd3485ca399775a488fa7d] Aug-17 16:29:04.283 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 644; name: POREC:digest_align_annotate (635); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/77d69eb8bd3485ca399775a488fa7d] Aug-17 16:29:04.284 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (635)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/77d69eb8bd3485ca399775a488fa7d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:29:04.286 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:29:04.291 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:29:04.311 [Task submitter] INFO nextflow.Session - [b3/4ecb6d] Submitted process > POREC:digest_align_annotate (636) Aug-17 16:30:41.638 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 648; name: POREC:digest_align_annotate (639); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/afef8bf52973b5bc24df0fa0e20f4d] ~> TaskHandler[id: 647; name: POREC:digest_align_annotate (638); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/3300e69578d3d79a0c688019d9da9f] ~> TaskHandler[id: 650; name: POREC:digest_align_annotate (641); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7bff69df241362e1454023d965f840] ~> TaskHandler[id: 651; name: POREC:digest_align_annotate (642); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/53d84336c484e605acc14f6334394c] ~> TaskHandler[id: 654; name: POREC:digest_align_annotate (645); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f8d66a9b32ae3cf13ca3c3fc595748] ~> TaskHandler[id: 653; name: POREC:digest_align_annotate (644); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/e52a20500e786a3f21009afd1911af] ~> TaskHandler[id: 655; name: POREC:digest_align_annotate (646); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2b853414b14f3fc0352e90e820ff40] ~> TaskHandler[id: 656; name: POREC:digest_align_annotate (647); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/844f2c3c5a1a6aaa8f800791806211] ~> TaskHandler[id: 652; name: POREC:digest_align_annotate (643); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/64b1237b35f7c557921292aee360b9] ~> TaskHandler[id: 659; name: POREC:digest_align_annotate (650); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/3f60e46419ba5a35c82d5e77b10a40] .. remaining tasks omitted. Aug-17 16:30:52.867 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 645; name: POREC:digest_align_annotate (636); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/4ecb6d6dbb7470000252e8aa2ba477] Aug-17 16:30:52.869 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (636)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/4ecb6d6dbb7470000252e8aa2ba477/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:30:52.869 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:30:52.891 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:30:52.891 [Task submitter] INFO nextflow.Session - [c3/afef8b] Submitted process > POREC:digest_align_annotate (639) Aug-17 16:32:41.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 648; name: POREC:digest_align_annotate (639); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/afef8bf52973b5bc24df0fa0e20f4d] Aug-17 16:32:41.479 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (639)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/afef8bf52973b5bc24df0fa0e20f4d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:32:41.480 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:32:41.484 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:32:41.508 [Task submitter] INFO nextflow.Session - [0a/3300e6] Submitted process > POREC:digest_align_annotate (638) Aug-17 16:33:40.941 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 647; name: POREC:digest_align_annotate (638); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/3300e69578d3d79a0c688019d9da9f] Aug-17 16:34:24.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 647; name: POREC:digest_align_annotate (638); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/3300e69578d3d79a0c688019d9da9f] Aug-17 16:34:24.075 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (638)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/3300e69578d3d79a0c688019d9da9f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:34:24.075 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:34:24.081 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:34:24.081 [Task submitter] INFO nextflow.Session - [14/7bff69] Submitted process > POREC:digest_align_annotate (641) Aug-17 16:35:42.314 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 651; name: POREC:digest_align_annotate (642); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/53d84336c484e605acc14f6334394c] ~> TaskHandler[id: 654; name: POREC:digest_align_annotate (645); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f8d66a9b32ae3cf13ca3c3fc595748] ~> TaskHandler[id: 653; name: POREC:digest_align_annotate (644); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/e52a20500e786a3f21009afd1911af] ~> TaskHandler[id: 655; name: POREC:digest_align_annotate (646); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2b853414b14f3fc0352e90e820ff40] ~> TaskHandler[id: 656; name: POREC:digest_align_annotate (647); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/844f2c3c5a1a6aaa8f800791806211] ~> TaskHandler[id: 652; name: POREC:digest_align_annotate (643); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/64b1237b35f7c557921292aee360b9] ~> TaskHandler[id: 659; name: POREC:digest_align_annotate (650); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/3f60e46419ba5a35c82d5e77b10a40] ~> TaskHandler[id: 660; name: POREC:digest_align_annotate (651); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/d1e6e85938f8ea0528e61b8e0383e4] ~> TaskHandler[id: 661; name: POREC:digest_align_annotate (652); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/9fc4f0eddddf54395d17bb52f887d8] ~> TaskHandler[id: 662; name: POREC:digest_align_annotate (653); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/8d389399233dd70811a1b04d369a18] .. remaining tasks omitted. Aug-17 16:36:01.878 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 650; name: POREC:digest_align_annotate (641); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7bff69df241362e1454023d965f840] Aug-17 16:36:01.880 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (641)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7bff69df241362e1454023d965f840/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:36:01.882 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:36:01.888 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:36:01.888 [Task submitter] INFO nextflow.Session - [4d/53d843] Submitted process > POREC:digest_align_annotate (642) Aug-17 16:37:48.034 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 651; name: POREC:digest_align_annotate (642); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/53d84336c484e605acc14f6334394c] Aug-17 16:37:48.035 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (642)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/53d84336c484e605acc14f6334394c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:37:48.036 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:37:48.039 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:37:48.040 [Task submitter] INFO nextflow.Session - [a5/f8d66a] Submitted process > POREC:digest_align_annotate (645) Aug-17 16:38:40.998 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 654; name: POREC:digest_align_annotate (645); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f8d66a9b32ae3cf13ca3c3fc595748] Aug-17 16:39:38.871 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 654; name: POREC:digest_align_annotate (645); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f8d66a9b32ae3cf13ca3c3fc595748] Aug-17 16:39:38.872 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (645)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/f8d66a9b32ae3cf13ca3c3fc595748/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:39:38.873 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:39:38.878 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:39:38.878 [Task submitter] INFO nextflow.Session - [91/e52a20] Submitted process > POREC:digest_align_annotate (644) Aug-17 16:40:43.084 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 655; name: POREC:digest_align_annotate (646); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2b853414b14f3fc0352e90e820ff40] ~> TaskHandler[id: 656; name: POREC:digest_align_annotate (647); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/844f2c3c5a1a6aaa8f800791806211] ~> TaskHandler[id: 652; name: POREC:digest_align_annotate (643); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/64b1237b35f7c557921292aee360b9] ~> TaskHandler[id: 659; name: POREC:digest_align_annotate (650); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/3f60e46419ba5a35c82d5e77b10a40] ~> TaskHandler[id: 660; name: POREC:digest_align_annotate (651); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/d1e6e85938f8ea0528e61b8e0383e4] ~> TaskHandler[id: 661; name: POREC:digest_align_annotate (652); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/9fc4f0eddddf54395d17bb52f887d8] ~> TaskHandler[id: 662; name: POREC:digest_align_annotate (653); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/8d389399233dd70811a1b04d369a18] ~> TaskHandler[id: 663; name: POREC:digest_align_annotate (654); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/88bebabb67a1b991c31f76be996bc0] ~> TaskHandler[id: 664; name: POREC:digest_align_annotate (655); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/963c258991a400c3025f7e01d3b7e7] ~> TaskHandler[id: 665; name: POREC:digest_align_annotate (656); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/3493d136ecb57dd6369ea47dea99d1] .. remaining tasks omitted. Aug-17 16:41:28.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 653; name: POREC:digest_align_annotate (644); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/e52a20500e786a3f21009afd1911af] Aug-17 16:41:28.282 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (644)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/e52a20500e786a3f21009afd1911af/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:41:28.283 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:41:28.287 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:41:28.288 [Task submitter] INFO nextflow.Session - [8b/2b8534] Submitted process > POREC:digest_align_annotate (646) Aug-17 16:43:05.169 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 655; name: POREC:digest_align_annotate (646); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2b853414b14f3fc0352e90e820ff40] Aug-17 16:43:05.170 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (646)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/2b853414b14f3fc0352e90e820ff40/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:43:05.174 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:43:05.177 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:43:05.177 [Task submitter] INFO nextflow.Session - [0a/844f2c] Submitted process > POREC:digest_align_annotate (647) Aug-17 16:43:41.008 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 656; name: POREC:digest_align_annotate (647); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/844f2c3c5a1a6aaa8f800791806211] Aug-17 16:44:40.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 656; name: POREC:digest_align_annotate (647); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/844f2c3c5a1a6aaa8f800791806211] Aug-17 16:44:40.930 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (647)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/844f2c3c5a1a6aaa8f800791806211/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:44:40.931 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:44:40.942 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:44:40.942 [Task submitter] INFO nextflow.Session - [da/64b123] Submitted process > POREC:digest_align_annotate (643) Aug-17 16:45:43.126 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 659; name: POREC:digest_align_annotate (650); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/3f60e46419ba5a35c82d5e77b10a40] ~> TaskHandler[id: 660; name: POREC:digest_align_annotate (651); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/d1e6e85938f8ea0528e61b8e0383e4] ~> TaskHandler[id: 661; name: POREC:digest_align_annotate (652); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/9fc4f0eddddf54395d17bb52f887d8] ~> TaskHandler[id: 662; name: POREC:digest_align_annotate (653); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/8d389399233dd70811a1b04d369a18] ~> TaskHandler[id: 663; name: POREC:digest_align_annotate (654); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/88bebabb67a1b991c31f76be996bc0] ~> TaskHandler[id: 664; name: POREC:digest_align_annotate (655); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/963c258991a400c3025f7e01d3b7e7] ~> TaskHandler[id: 665; name: POREC:digest_align_annotate (656); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/3493d136ecb57dd6369ea47dea99d1] ~> TaskHandler[id: 667; name: POREC:digest_align_annotate (658); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/16d62201bdad2fa850c75aeacedc3f] ~> TaskHandler[id: 668; name: POREC:digest_align_annotate (659); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/4cd066540ba19670af5c0f66bb9a94] ~> TaskHandler[id: 669; name: POREC:digest_align_annotate (660); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/544487939154547e787e3b3eb0b669] .. remaining tasks omitted. Aug-17 16:46:12.475 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 652; name: POREC:digest_align_annotate (643); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/64b1237b35f7c557921292aee360b9] Aug-17 16:46:12.475 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (643)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/64b1237b35f7c557921292aee360b9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:46:12.476 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:46:12.481 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:46:12.506 [Task submitter] INFO nextflow.Session - [f3/3f60e4] Submitted process > POREC:digest_align_annotate (650) Aug-17 16:48:03.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 659; name: POREC:digest_align_annotate (650); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/3f60e46419ba5a35c82d5e77b10a40] Aug-17 16:48:03.480 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (650)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/3f60e46419ba5a35c82d5e77b10a40/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:48:03.481 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:48:03.485 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:48:03.485 [Task submitter] INFO nextflow.Session - [7f/d1e6e8] Submitted process > POREC:digest_align_annotate (651) Aug-17 16:48:41.018 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 660; name: POREC:digest_align_annotate (651); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/d1e6e85938f8ea0528e61b8e0383e4] Aug-17 16:49:40.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 660; name: POREC:digest_align_annotate (651); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/d1e6e85938f8ea0528e61b8e0383e4] Aug-17 16:49:40.219 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (651)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/d1e6e85938f8ea0528e61b8e0383e4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:49:40.220 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:49:40.231 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:49:40.231 [Task submitter] INFO nextflow.Session - [b6/9fc4f0] Submitted process > POREC:digest_align_annotate (652) Aug-17 16:50:43.414 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 662; name: POREC:digest_align_annotate (653); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/8d389399233dd70811a1b04d369a18] ~> TaskHandler[id: 663; name: POREC:digest_align_annotate (654); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/88bebabb67a1b991c31f76be996bc0] ~> TaskHandler[id: 664; name: POREC:digest_align_annotate (655); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/963c258991a400c3025f7e01d3b7e7] ~> TaskHandler[id: 665; name: POREC:digest_align_annotate (656); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/3493d136ecb57dd6369ea47dea99d1] ~> TaskHandler[id: 667; name: POREC:digest_align_annotate (658); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/16d62201bdad2fa850c75aeacedc3f] ~> TaskHandler[id: 668; name: POREC:digest_align_annotate (659); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/4cd066540ba19670af5c0f66bb9a94] ~> TaskHandler[id: 669; name: POREC:digest_align_annotate (660); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/544487939154547e787e3b3eb0b669] ~> TaskHandler[id: 671; name: POREC:digest_align_annotate (662); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/99e143e63ef45ce35d77e0bdfa4baa] ~> TaskHandler[id: 670; name: POREC:digest_align_annotate (661); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/78991a71f7941e126bfbb8776b2b4d] ~> TaskHandler[id: 672; name: POREC:digest_align_annotate (663); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7f4e076a368f079c3ef38af819793f] .. remaining tasks omitted. Aug-17 16:51:27.035 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 661; name: POREC:digest_align_annotate (652); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/9fc4f0eddddf54395d17bb52f887d8] Aug-17 16:51:27.035 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (652)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/9fc4f0eddddf54395d17bb52f887d8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:51:27.036 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:51:27.091 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:51:27.091 [Task submitter] INFO nextflow.Session - [15/8d3893] Submitted process > POREC:digest_align_annotate (653) Aug-17 16:53:02.735 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 662; name: POREC:digest_align_annotate (653); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/8d389399233dd70811a1b04d369a18] Aug-17 16:53:02.736 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (653)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/8d389399233dd70811a1b04d369a18/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:53:02.736 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:53:02.741 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:53:02.742 [Task submitter] INFO nextflow.Session - [a6/88beba] Submitted process > POREC:digest_align_annotate (654) Aug-17 16:53:41.075 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 663; name: POREC:digest_align_annotate (654); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/88bebabb67a1b991c31f76be996bc0] Aug-17 16:54:38.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 663; name: POREC:digest_align_annotate (654); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/88bebabb67a1b991c31f76be996bc0] Aug-17 16:54:38.151 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (654)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/88bebabb67a1b991c31f76be996bc0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:54:38.152 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:54:38.174 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:54:38.174 [Task submitter] INFO nextflow.Session - [93/963c25] Submitted process > POREC:digest_align_annotate (655) Aug-17 16:55:44.367 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 665; name: POREC:digest_align_annotate (656); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/3493d136ecb57dd6369ea47dea99d1] ~> TaskHandler[id: 667; name: POREC:digest_align_annotate (658); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/16d62201bdad2fa850c75aeacedc3f] ~> TaskHandler[id: 668; name: POREC:digest_align_annotate (659); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/4cd066540ba19670af5c0f66bb9a94] ~> TaskHandler[id: 669; name: POREC:digest_align_annotate (660); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/544487939154547e787e3b3eb0b669] ~> TaskHandler[id: 671; name: POREC:digest_align_annotate (662); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/99e143e63ef45ce35d77e0bdfa4baa] ~> TaskHandler[id: 670; name: POREC:digest_align_annotate (661); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/78991a71f7941e126bfbb8776b2b4d] ~> TaskHandler[id: 672; name: POREC:digest_align_annotate (663); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7f4e076a368f079c3ef38af819793f] ~> TaskHandler[id: 673; name: POREC:digest_align_annotate (664); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/3be664abd49ed851c1da615e58b7cc] ~> TaskHandler[id: 674; name: POREC:digest_align_annotate (665); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/e09e788a6aff802def950e55a57ad2] ~> TaskHandler[id: 704; name: POREC:digest_align_annotate (695); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/d8e94ec41c4ed33e255bfe08451c03] .. remaining tasks omitted. Aug-17 16:56:13.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 664; name: POREC:digest_align_annotate (655); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/963c258991a400c3025f7e01d3b7e7] Aug-17 16:56:13.583 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (655)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/963c258991a400c3025f7e01d3b7e7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:56:13.584 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:56:13.588 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:56:13.589 [Task submitter] INFO nextflow.Session - [51/3493d1] Submitted process > POREC:digest_align_annotate (656) Aug-17 16:57:54.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 665; name: POREC:digest_align_annotate (656); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/3493d136ecb57dd6369ea47dea99d1] Aug-17 16:57:54.670 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (656)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/3493d136ecb57dd6369ea47dea99d1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:57:54.687 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:57:54.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:57:54.692 [Task submitter] INFO nextflow.Session - [d9/16d622] Submitted process > POREC:digest_align_annotate (658) Aug-17 16:58:41.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 667; name: POREC:digest_align_annotate (658); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/16d62201bdad2fa850c75aeacedc3f] Aug-17 16:59:33.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 667; name: POREC:digest_align_annotate (658); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/16d62201bdad2fa850c75aeacedc3f] Aug-17 16:59:33.192 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (658)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/16d62201bdad2fa850c75aeacedc3f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 16:59:33.193 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 16:59:33.198 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 16:59:33.198 [Task submitter] INFO nextflow.Session - [7f/4cd066] Submitted process > POREC:digest_align_annotate (659) Aug-17 17:00:44.403 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 669; name: POREC:digest_align_annotate (660); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/544487939154547e787e3b3eb0b669] ~> TaskHandler[id: 671; name: POREC:digest_align_annotate (662); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/99e143e63ef45ce35d77e0bdfa4baa] ~> TaskHandler[id: 670; name: POREC:digest_align_annotate (661); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/78991a71f7941e126bfbb8776b2b4d] ~> TaskHandler[id: 672; name: POREC:digest_align_annotate (663); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7f4e076a368f079c3ef38af819793f] ~> TaskHandler[id: 673; name: POREC:digest_align_annotate (664); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/3be664abd49ed851c1da615e58b7cc] ~> TaskHandler[id: 674; name: POREC:digest_align_annotate (665); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/e09e788a6aff802def950e55a57ad2] ~> TaskHandler[id: 704; name: POREC:digest_align_annotate (695); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/d8e94ec41c4ed33e255bfe08451c03] ~> TaskHandler[id: 675; name: POREC:digest_align_annotate (666); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/2292d2acb52cda4eb7358848ec3521] ~> TaskHandler[id: 677; name: POREC:digest_align_annotate (668); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/7b3f04b1ec7ceaa974402cdc36352c] ~> TaskHandler[id: 678; name: POREC:digest_align_annotate (669); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/61dae0767a485edcb21987bf25838d] .. remaining tasks omitted. Aug-17 17:01:13.572 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 668; name: POREC:digest_align_annotate (659); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/4cd066540ba19670af5c0f66bb9a94] Aug-17 17:01:13.573 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (659)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/4cd066540ba19670af5c0f66bb9a94/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:01:13.573 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:01:13.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:01:13.579 [Task submitter] INFO nextflow.Session - [46/544487] Submitted process > POREC:digest_align_annotate (660) Aug-17 17:02:49.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 669; name: POREC:digest_align_annotate (660); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/544487939154547e787e3b3eb0b669] Aug-17 17:02:49.093 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (660)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/544487939154547e787e3b3eb0b669/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:02:49.095 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:02:49.100 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:02:49.100 [Task submitter] INFO nextflow.Session - [e6/99e143] Submitted process > POREC:digest_align_annotate (662) Aug-17 17:03:41.152 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 671; name: POREC:digest_align_annotate (662); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/99e143e63ef45ce35d77e0bdfa4baa] Aug-17 17:04:26.428 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 671; name: POREC:digest_align_annotate (662); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/99e143e63ef45ce35d77e0bdfa4baa] Aug-17 17:04:26.428 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (662)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/99e143e63ef45ce35d77e0bdfa4baa/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:04:26.429 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:04:26.434 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:04:26.435 [Task submitter] INFO nextflow.Session - [af/78991a] Submitted process > POREC:digest_align_annotate (661) Aug-17 17:05:44.661 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 672; name: POREC:digest_align_annotate (663); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7f4e076a368f079c3ef38af819793f] ~> TaskHandler[id: 673; name: POREC:digest_align_annotate (664); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/3be664abd49ed851c1da615e58b7cc] ~> TaskHandler[id: 674; name: POREC:digest_align_annotate (665); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/e09e788a6aff802def950e55a57ad2] ~> TaskHandler[id: 704; name: POREC:digest_align_annotate (695); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/d8e94ec41c4ed33e255bfe08451c03] ~> TaskHandler[id: 675; name: POREC:digest_align_annotate (666); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/2292d2acb52cda4eb7358848ec3521] ~> TaskHandler[id: 677; name: POREC:digest_align_annotate (668); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/7b3f04b1ec7ceaa974402cdc36352c] ~> TaskHandler[id: 678; name: POREC:digest_align_annotate (669); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/61dae0767a485edcb21987bf25838d] ~> TaskHandler[id: 676; name: POREC:digest_align_annotate (667); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/c70c11a54ad7e9d3a3ae420b16b86f] ~> TaskHandler[id: 679; name: POREC:digest_align_annotate (670); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/0c2c2845f81269d6c9b1e933758c41] ~> TaskHandler[id: 680; name: POREC:digest_align_annotate (671); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/7cf890d415a679c745b1f45dfb9b33] .. remaining tasks omitted. Aug-17 17:06:05.786 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 670; name: POREC:digest_align_annotate (661); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/78991a71f7941e126bfbb8776b2b4d] Aug-17 17:06:05.787 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (661)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/78991a71f7941e126bfbb8776b2b4d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:06:05.789 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:06:05.808 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:06:05.809 [Task submitter] INFO nextflow.Session - [47/7f4e07] Submitted process > POREC:digest_align_annotate (663) Aug-17 17:07:57.521 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 672; name: POREC:digest_align_annotate (663); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7f4e076a368f079c3ef38af819793f] Aug-17 17:07:57.521 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (663)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/7f4e076a368f079c3ef38af819793f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:07:57.522 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:07:57.526 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:07:57.526 [Task submitter] INFO nextflow.Session - [99/3be664] Submitted process > POREC:digest_align_annotate (664) Aug-17 17:08:41.173 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 673; name: POREC:digest_align_annotate (664); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/3be664abd49ed851c1da615e58b7cc] Aug-17 17:09:49.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 673; name: POREC:digest_align_annotate (664); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/3be664abd49ed851c1da615e58b7cc] Aug-17 17:09:49.007 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (664)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/3be664abd49ed851c1da615e58b7cc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:09:49.008 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:09:49.014 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:09:49.014 [Task submitter] INFO nextflow.Session - [03/e09e78] Submitted process > POREC:digest_align_annotate (665) Aug-17 17:10:45.179 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 704; name: POREC:digest_align_annotate (695); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/d8e94ec41c4ed33e255bfe08451c03] ~> TaskHandler[id: 675; name: POREC:digest_align_annotate (666); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/2292d2acb52cda4eb7358848ec3521] ~> TaskHandler[id: 677; name: POREC:digest_align_annotate (668); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/7b3f04b1ec7ceaa974402cdc36352c] ~> TaskHandler[id: 678; name: POREC:digest_align_annotate (669); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/61dae0767a485edcb21987bf25838d] ~> TaskHandler[id: 676; name: POREC:digest_align_annotate (667); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/c70c11a54ad7e9d3a3ae420b16b86f] ~> TaskHandler[id: 679; name: POREC:digest_align_annotate (670); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/0c2c2845f81269d6c9b1e933758c41] ~> TaskHandler[id: 680; name: POREC:digest_align_annotate (671); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/7cf890d415a679c745b1f45dfb9b33] ~> TaskHandler[id: 681; name: POREC:digest_align_annotate (672); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/255a78095da814e96c03a2ff56a125] ~> TaskHandler[id: 712; name: POREC:digest_align_annotate (703); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c08785bb87050c4804e9c60bbb744c] ~> TaskHandler[id: 682; name: POREC:digest_align_annotate (673); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/a0adf4c25ef85fa21b75cb5233cae9] .. remaining tasks omitted. Aug-17 17:11:25.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 674; name: POREC:digest_align_annotate (665); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/e09e788a6aff802def950e55a57ad2] Aug-17 17:11:25.489 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (665)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/e09e788a6aff802def950e55a57ad2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:11:25.489 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:11:25.493 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:11:25.504 [Task submitter] INFO nextflow.Session - [cb/d8e94e] Submitted process > POREC:digest_align_annotate (695) Aug-17 17:13:19.266 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 704; name: POREC:digest_align_annotate (695); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/d8e94ec41c4ed33e255bfe08451c03] Aug-17 17:13:19.266 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (695)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/d8e94ec41c4ed33e255bfe08451c03/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:13:19.267 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:13:19.271 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:13:19.271 [Task submitter] INFO nextflow.Session - [97/2292d2] Submitted process > POREC:digest_align_annotate (666) Aug-17 17:13:41.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 675; name: POREC:digest_align_annotate (666); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/2292d2acb52cda4eb7358848ec3521] Aug-17 17:14:52.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 675; name: POREC:digest_align_annotate (666); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/2292d2acb52cda4eb7358848ec3521] Aug-17 17:14:52.735 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (666)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/2292d2acb52cda4eb7358848ec3521/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:14:52.735 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:14:52.745 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:14:52.745 [Task submitter] INFO nextflow.Session - [86/7b3f04] Submitted process > POREC:digest_align_annotate (668) Aug-17 17:15:45.918 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 678; name: POREC:digest_align_annotate (669); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/61dae0767a485edcb21987bf25838d] ~> TaskHandler[id: 676; name: POREC:digest_align_annotate (667); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/c70c11a54ad7e9d3a3ae420b16b86f] ~> TaskHandler[id: 679; name: POREC:digest_align_annotate (670); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/0c2c2845f81269d6c9b1e933758c41] ~> TaskHandler[id: 680; name: POREC:digest_align_annotate (671); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/7cf890d415a679c745b1f45dfb9b33] ~> TaskHandler[id: 681; name: POREC:digest_align_annotate (672); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/255a78095da814e96c03a2ff56a125] ~> TaskHandler[id: 712; name: POREC:digest_align_annotate (703); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c08785bb87050c4804e9c60bbb744c] ~> TaskHandler[id: 682; name: POREC:digest_align_annotate (673); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/a0adf4c25ef85fa21b75cb5233cae9] ~> TaskHandler[id: 683; name: POREC:digest_align_annotate (674); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/60ff3f95eca3a585217b86209d442c] ~> TaskHandler[id: 685; name: POREC:digest_align_annotate (676); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/7ba1e4fe9f75f5928a5a8894c540d6] ~> TaskHandler[id: 684; name: POREC:digest_align_annotate (675); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1ec61dc5963abd2fb798a4136fccf4] .. remaining tasks omitted. Aug-17 17:16:44.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 677; name: POREC:digest_align_annotate (668); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/7b3f04b1ec7ceaa974402cdc36352c] Aug-17 17:16:44.246 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (668)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/7b3f04b1ec7ceaa974402cdc36352c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:16:44.247 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:16:44.253 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:16:44.253 [Task submitter] INFO nextflow.Session - [6e/61dae0] Submitted process > POREC:digest_align_annotate (669) Aug-17 17:18:34.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 678; name: POREC:digest_align_annotate (669); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/61dae0767a485edcb21987bf25838d] Aug-17 17:18:34.351 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (669)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/61dae0767a485edcb21987bf25838d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:18:34.352 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:18:34.363 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:18:34.363 [Task submitter] INFO nextflow.Session - [af/c70c11] Submitted process > POREC:digest_align_annotate (667) Aug-17 17:18:41.258 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 676; name: POREC:digest_align_annotate (667); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/c70c11a54ad7e9d3a3ae420b16b86f] Aug-17 17:20:37.982 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 676; name: POREC:digest_align_annotate (667); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/c70c11a54ad7e9d3a3ae420b16b86f] Aug-17 17:20:37.983 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (667)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/c70c11a54ad7e9d3a3ae420b16b86f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:20:37.984 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:20:37.989 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:20:38.001 [Task submitter] INFO nextflow.Session - [65/0c2c28] Submitted process > POREC:digest_align_annotate (670) Aug-17 17:20:46.032 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 680; name: POREC:digest_align_annotate (671); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/7cf890d415a679c745b1f45dfb9b33] ~> TaskHandler[id: 681; name: POREC:digest_align_annotate (672); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/255a78095da814e96c03a2ff56a125] ~> TaskHandler[id: 712; name: POREC:digest_align_annotate (703); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c08785bb87050c4804e9c60bbb744c] ~> TaskHandler[id: 682; name: POREC:digest_align_annotate (673); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/a0adf4c25ef85fa21b75cb5233cae9] ~> TaskHandler[id: 683; name: POREC:digest_align_annotate (674); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/60ff3f95eca3a585217b86209d442c] ~> TaskHandler[id: 685; name: POREC:digest_align_annotate (676); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/7ba1e4fe9f75f5928a5a8894c540d6] ~> TaskHandler[id: 684; name: POREC:digest_align_annotate (675); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1ec61dc5963abd2fb798a4136fccf4] ~> TaskHandler[id: 686; name: POREC:digest_align_annotate (677); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/91c41947174a3902cd7796ff1ec9bf] ~> TaskHandler[id: 687; name: POREC:digest_align_annotate (678); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/b8982d9c71883edb02dc29e6ec50ff] ~> TaskHandler[id: 688; name: POREC:digest_align_annotate (679); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/432ec2ea9454a1127f099c2a59eac5] .. remaining tasks omitted. Aug-17 17:22:17.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 679; name: POREC:digest_align_annotate (670); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/0c2c2845f81269d6c9b1e933758c41] Aug-17 17:22:17.911 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (670)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/0c2c2845f81269d6c9b1e933758c41/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:22:17.912 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:22:17.918 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:22:17.918 [Task submitter] INFO nextflow.Session - [61/7cf890] Submitted process > POREC:digest_align_annotate (671) Aug-17 17:23:41.304 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 680; name: POREC:digest_align_annotate (671); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/7cf890d415a679c745b1f45dfb9b33] Aug-17 17:23:55.272 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 680; name: POREC:digest_align_annotate (671); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/7cf890d415a679c745b1f45dfb9b33] Aug-17 17:23:55.273 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (671)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/7cf890d415a679c745b1f45dfb9b33/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:23:55.274 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:23:55.281 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:23:55.281 [Task submitter] INFO nextflow.Session - [ed/255a78] Submitted process > POREC:digest_align_annotate (672) Aug-17 17:25:44.787 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 681; name: POREC:digest_align_annotate (672); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/255a78095da814e96c03a2ff56a125] Aug-17 17:25:44.787 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (672)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/255a78095da814e96c03a2ff56a125/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:25:44.788 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:25:44.794 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:25:44.795 [Task submitter] INFO nextflow.Session - [98/c08785] Submitted process > POREC:digest_align_annotate (703) Aug-17 17:25:46.806 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 682; name: POREC:digest_align_annotate (673); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/a0adf4c25ef85fa21b75cb5233cae9] ~> TaskHandler[id: 683; name: POREC:digest_align_annotate (674); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/60ff3f95eca3a585217b86209d442c] ~> TaskHandler[id: 685; name: POREC:digest_align_annotate (676); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/7ba1e4fe9f75f5928a5a8894c540d6] ~> TaskHandler[id: 684; name: POREC:digest_align_annotate (675); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1ec61dc5963abd2fb798a4136fccf4] ~> TaskHandler[id: 686; name: POREC:digest_align_annotate (677); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/91c41947174a3902cd7796ff1ec9bf] ~> TaskHandler[id: 687; name: POREC:digest_align_annotate (678); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/b8982d9c71883edb02dc29e6ec50ff] ~> TaskHandler[id: 688; name: POREC:digest_align_annotate (679); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/432ec2ea9454a1127f099c2a59eac5] ~> TaskHandler[id: 689; name: POREC:digest_align_annotate (680); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/e87a9525e99fc437202200c26bf73c] ~> TaskHandler[id: 690; name: POREC:digest_align_annotate (681); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/135932c313b0d525af78f0de2f5909] ~> TaskHandler[id: 691; name: POREC:digest_align_annotate (682); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/f75ddc819fb2f12f1e83d1956e4d2f] .. remaining tasks omitted. Aug-17 17:27:23.357 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 712; name: POREC:digest_align_annotate (703); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c08785bb87050c4804e9c60bbb744c] Aug-17 17:27:23.358 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (703)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/c08785bb87050c4804e9c60bbb744c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:27:23.359 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:27:23.363 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:27:23.363 [Task submitter] INFO nextflow.Session - [d6/a0adf4] Submitted process > POREC:digest_align_annotate (673) Aug-17 17:28:41.373 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 682; name: POREC:digest_align_annotate (673); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/a0adf4c25ef85fa21b75cb5233cae9] Aug-17 17:28:59.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 682; name: POREC:digest_align_annotate (673); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/a0adf4c25ef85fa21b75cb5233cae9] Aug-17 17:28:59.790 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (673)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/a0adf4c25ef85fa21b75cb5233cae9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:28:59.790 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:28:59.796 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:28:59.796 [Task submitter] INFO nextflow.Session - [e9/60ff3f] Submitted process > POREC:digest_align_annotate (674) Aug-17 17:30:34.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 683; name: POREC:digest_align_annotate (674); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/60ff3f95eca3a585217b86209d442c] Aug-17 17:30:34.772 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (674)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/60ff3f95eca3a585217b86209d442c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:30:34.773 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:30:34.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:30:34.777 [Task submitter] INFO nextflow.Session - [9b/7ba1e4] Submitted process > POREC:digest_align_annotate (676) Aug-17 17:30:46.821 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 684; name: POREC:digest_align_annotate (675); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1ec61dc5963abd2fb798a4136fccf4] ~> TaskHandler[id: 686; name: POREC:digest_align_annotate (677); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/91c41947174a3902cd7796ff1ec9bf] ~> TaskHandler[id: 687; name: POREC:digest_align_annotate (678); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/b8982d9c71883edb02dc29e6ec50ff] ~> TaskHandler[id: 688; name: POREC:digest_align_annotate (679); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/432ec2ea9454a1127f099c2a59eac5] ~> TaskHandler[id: 689; name: POREC:digest_align_annotate (680); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/e87a9525e99fc437202200c26bf73c] ~> TaskHandler[id: 690; name: POREC:digest_align_annotate (681); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/135932c313b0d525af78f0de2f5909] ~> TaskHandler[id: 691; name: POREC:digest_align_annotate (682); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/f75ddc819fb2f12f1e83d1956e4d2f] ~> TaskHandler[id: 692; name: POREC:digest_align_annotate (683); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/bfa8fdd7a0b1b22b326950d5295285] ~> TaskHandler[id: 693; name: POREC:digest_align_annotate (684); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e83dc3afe8ecea106a473e5b63154a] ~> TaskHandler[id: 694; name: POREC:digest_align_annotate (685); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/c2ea2c06247d06ec7bb203db490bd2] .. remaining tasks omitted. Aug-17 17:32:21.098 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 685; name: POREC:digest_align_annotate (676); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/7ba1e4fe9f75f5928a5a8894c540d6] Aug-17 17:32:21.099 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (676)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/7ba1e4fe9f75f5928a5a8894c540d6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:32:21.100 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:32:21.105 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:32:21.105 [Task submitter] INFO nextflow.Session - [c4/1ec61d] Submitted process > POREC:digest_align_annotate (675) Aug-17 17:33:41.413 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 684; name: POREC:digest_align_annotate (675); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1ec61dc5963abd2fb798a4136fccf4] Aug-17 17:34:01.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 684; name: POREC:digest_align_annotate (675); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1ec61dc5963abd2fb798a4136fccf4] Aug-17 17:34:01.619 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (675)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1ec61dc5963abd2fb798a4136fccf4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:34:01.620 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:34:01.624 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:34:01.626 [Task submitter] INFO nextflow.Session - [50/91c419] Submitted process > POREC:digest_align_annotate (677) Aug-17 17:35:37.768 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 686; name: POREC:digest_align_annotate (677); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/91c41947174a3902cd7796ff1ec9bf] Aug-17 17:35:37.769 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (677)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/91c41947174a3902cd7796ff1ec9bf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:35:37.770 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:35:37.775 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:35:37.775 [Task submitter] INFO nextflow.Session - [3e/b8982d] Submitted process > POREC:digest_align_annotate (678) Aug-17 17:35:47.813 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 688; name: POREC:digest_align_annotate (679); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/432ec2ea9454a1127f099c2a59eac5] ~> TaskHandler[id: 689; name: POREC:digest_align_annotate (680); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/e87a9525e99fc437202200c26bf73c] ~> TaskHandler[id: 690; name: POREC:digest_align_annotate (681); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/135932c313b0d525af78f0de2f5909] ~> TaskHandler[id: 691; name: POREC:digest_align_annotate (682); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/f75ddc819fb2f12f1e83d1956e4d2f] ~> TaskHandler[id: 692; name: POREC:digest_align_annotate (683); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/bfa8fdd7a0b1b22b326950d5295285] ~> TaskHandler[id: 693; name: POREC:digest_align_annotate (684); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e83dc3afe8ecea106a473e5b63154a] ~> TaskHandler[id: 694; name: POREC:digest_align_annotate (685); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/c2ea2c06247d06ec7bb203db490bd2] ~> TaskHandler[id: 696; name: POREC:digest_align_annotate (687); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3d276f7c491ec7cbffcedcbb31f622] ~> TaskHandler[id: 695; name: POREC:digest_align_annotate (686); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/8c27883202f46b866e8159782a59ef] ~> TaskHandler[id: 697; name: POREC:digest_align_annotate (688); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/34f08a04d4afd6d60f8714cedaac0c] .. remaining tasks omitted. Aug-17 17:37:14.867 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 687; name: POREC:digest_align_annotate (678); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/b8982d9c71883edb02dc29e6ec50ff] Aug-17 17:37:14.868 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (678)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/b8982d9c71883edb02dc29e6ec50ff/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:37:14.869 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:37:14.873 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:37:14.886 [Task submitter] INFO nextflow.Session - [2a/432ec2] Submitted process > POREC:digest_align_annotate (679) Aug-17 17:38:41.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 688; name: POREC:digest_align_annotate (679); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/432ec2ea9454a1127f099c2a59eac5] Aug-17 17:38:56.087 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 688; name: POREC:digest_align_annotate (679); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/432ec2ea9454a1127f099c2a59eac5] Aug-17 17:38:56.088 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (679)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/432ec2ea9454a1127f099c2a59eac5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:38:56.088 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:38:56.097 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:38:56.097 [Task submitter] INFO nextflow.Session - [d7/e87a95] Submitted process > POREC:digest_align_annotate (680) Aug-17 17:40:33.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 689; name: POREC:digest_align_annotate (680); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/e87a9525e99fc437202200c26bf73c] Aug-17 17:40:33.832 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (680)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/e87a9525e99fc437202200c26bf73c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:40:33.833 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:40:33.837 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:40:33.837 [Task submitter] INFO nextflow.Session - [8d/135932] Submitted process > POREC:digest_align_annotate (681) Aug-17 17:40:47.886 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 691; name: POREC:digest_align_annotate (682); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/f75ddc819fb2f12f1e83d1956e4d2f] ~> TaskHandler[id: 692; name: POREC:digest_align_annotate (683); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/bfa8fdd7a0b1b22b326950d5295285] ~> TaskHandler[id: 693; name: POREC:digest_align_annotate (684); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e83dc3afe8ecea106a473e5b63154a] ~> TaskHandler[id: 694; name: POREC:digest_align_annotate (685); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/c2ea2c06247d06ec7bb203db490bd2] ~> TaskHandler[id: 696; name: POREC:digest_align_annotate (687); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3d276f7c491ec7cbffcedcbb31f622] ~> TaskHandler[id: 695; name: POREC:digest_align_annotate (686); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/8c27883202f46b866e8159782a59ef] ~> TaskHandler[id: 697; name: POREC:digest_align_annotate (688); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/34f08a04d4afd6d60f8714cedaac0c] ~> TaskHandler[id: 698; name: POREC:digest_align_annotate (689); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/972ecdbc1fe8ae9270c9b53dcb1741] ~> TaskHandler[id: 699; name: POREC:digest_align_annotate (690); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/e79191334832294006b4966a8325a8] ~> TaskHandler[id: 700; name: POREC:digest_align_annotate (691); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/bd470efa1252dc72d5e40312638f0d] .. remaining tasks omitted. Aug-17 17:42:08.798 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 690; name: POREC:digest_align_annotate (681); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/135932c313b0d525af78f0de2f5909] Aug-17 17:42:08.800 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (681)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/135932c313b0d525af78f0de2f5909/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:42:08.801 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:42:08.806 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:42:08.806 [Task submitter] INFO nextflow.Session - [93/f75ddc] Submitted process > POREC:digest_align_annotate (682) Aug-17 17:43:41.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 691; name: POREC:digest_align_annotate (682); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/f75ddc819fb2f12f1e83d1956e4d2f] Aug-17 17:43:46.774 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 691; name: POREC:digest_align_annotate (682); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/f75ddc819fb2f12f1e83d1956e4d2f] Aug-17 17:43:46.775 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (682)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/f75ddc819fb2f12f1e83d1956e4d2f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:43:46.776 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:43:46.790 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:43:46.790 [Task submitter] INFO nextflow.Session - [50/bfa8fd] Submitted process > POREC:digest_align_annotate (683) Aug-17 17:45:25.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 692; name: POREC:digest_align_annotate (683); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/bfa8fdd7a0b1b22b326950d5295285] Aug-17 17:45:25.387 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (683)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/bfa8fdd7a0b1b22b326950d5295285/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:45:25.388 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:45:25.413 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:45:25.415 [Task submitter] INFO nextflow.Session - [01/e83dc3] Submitted process > POREC:digest_align_annotate (684) Aug-17 17:45:48.494 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 694; name: POREC:digest_align_annotate (685); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/c2ea2c06247d06ec7bb203db490bd2] ~> TaskHandler[id: 696; name: POREC:digest_align_annotate (687); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3d276f7c491ec7cbffcedcbb31f622] ~> TaskHandler[id: 695; name: POREC:digest_align_annotate (686); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/8c27883202f46b866e8159782a59ef] ~> TaskHandler[id: 697; name: POREC:digest_align_annotate (688); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/34f08a04d4afd6d60f8714cedaac0c] ~> TaskHandler[id: 698; name: POREC:digest_align_annotate (689); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/972ecdbc1fe8ae9270c9b53dcb1741] ~> TaskHandler[id: 699; name: POREC:digest_align_annotate (690); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/e79191334832294006b4966a8325a8] ~> TaskHandler[id: 700; name: POREC:digest_align_annotate (691); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/bd470efa1252dc72d5e40312638f0d] ~> TaskHandler[id: 701; name: POREC:digest_align_annotate (692); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/2c231d5d4c788f770455162c5767a6] ~> TaskHandler[id: 702; name: POREC:digest_align_annotate (693); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/ff86f834725ffdd9ff94625e00beb8] ~> TaskHandler[id: 703; name: POREC:digest_align_annotate (694); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/297165e89ca010f5ace7963b8f116d] .. remaining tasks omitted. Aug-17 17:47:13.292 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 693; name: POREC:digest_align_annotate (684); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e83dc3afe8ecea106a473e5b63154a] Aug-17 17:47:13.293 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (684)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e83dc3afe8ecea106a473e5b63154a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:47:13.294 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:47:13.299 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:47:13.300 [Task submitter] INFO nextflow.Session - [29/c2ea2c] Submitted process > POREC:digest_align_annotate (685) Aug-17 17:48:41.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 694; name: POREC:digest_align_annotate (685); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/c2ea2c06247d06ec7bb203db490bd2] Aug-17 17:48:52.258 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 694; name: POREC:digest_align_annotate (685); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/c2ea2c06247d06ec7bb203db490bd2] Aug-17 17:48:52.282 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (685)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/c2ea2c06247d06ec7bb203db490bd2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:48:52.284 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:48:52.290 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:48:52.290 [Task submitter] INFO nextflow.Session - [2d/3d276f] Submitted process > POREC:digest_align_annotate (687) Aug-17 17:50:37.981 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 696; name: POREC:digest_align_annotate (687); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3d276f7c491ec7cbffcedcbb31f622] Aug-17 17:50:37.982 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (687)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/3d276f7c491ec7cbffcedcbb31f622/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:50:37.983 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:50:37.988 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:50:37.988 [Task submitter] INFO nextflow.Session - [dd/8c2788] Submitted process > POREC:digest_align_annotate (686) Aug-17 17:50:49.030 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 697; name: POREC:digest_align_annotate (688); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/34f08a04d4afd6d60f8714cedaac0c] ~> TaskHandler[id: 698; name: POREC:digest_align_annotate (689); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/972ecdbc1fe8ae9270c9b53dcb1741] ~> TaskHandler[id: 699; name: POREC:digest_align_annotate (690); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/e79191334832294006b4966a8325a8] ~> TaskHandler[id: 700; name: POREC:digest_align_annotate (691); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/bd470efa1252dc72d5e40312638f0d] ~> TaskHandler[id: 701; name: POREC:digest_align_annotate (692); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/2c231d5d4c788f770455162c5767a6] ~> TaskHandler[id: 702; name: POREC:digest_align_annotate (693); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/ff86f834725ffdd9ff94625e00beb8] ~> TaskHandler[id: 703; name: POREC:digest_align_annotate (694); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/297165e89ca010f5ace7963b8f116d] ~> TaskHandler[id: 706; name: POREC:digest_align_annotate (697); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/799cedf25c24afb1922ec0cb74a444] ~> TaskHandler[id: 705; name: POREC:digest_align_annotate (696); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/6217b7e76f6f4f56c6fe6647a81efb] ~> TaskHandler[id: 707; name: POREC:digest_align_annotate (698); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/faf0ed77e8ec2dbd06371625d5dc3b] .. remaining tasks omitted. Aug-17 17:52:27.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 695; name: POREC:digest_align_annotate (686); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/8c27883202f46b866e8159782a59ef] Aug-17 17:52:27.651 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (686)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/8c27883202f46b866e8159782a59ef/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:52:27.652 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:52:27.661 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:52:27.661 [Task submitter] INFO nextflow.Session - [3d/34f08a] Submitted process > POREC:digest_align_annotate (688) Aug-17 17:53:41.558 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 697; name: POREC:digest_align_annotate (688); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/34f08a04d4afd6d60f8714cedaac0c] Aug-17 17:54:03.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 697; name: POREC:digest_align_annotate (688); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/34f08a04d4afd6d60f8714cedaac0c] Aug-17 17:54:03.231 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (688)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/34f08a04d4afd6d60f8714cedaac0c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:54:03.232 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:54:03.254 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:54:03.254 [Task submitter] INFO nextflow.Session - [a1/972ecd] Submitted process > POREC:digest_align_annotate (689) Aug-17 17:55:49.582 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 699; name: POREC:digest_align_annotate (690); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/e79191334832294006b4966a8325a8] ~> TaskHandler[id: 700; name: POREC:digest_align_annotate (691); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/bd470efa1252dc72d5e40312638f0d] ~> TaskHandler[id: 701; name: POREC:digest_align_annotate (692); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/2c231d5d4c788f770455162c5767a6] ~> TaskHandler[id: 702; name: POREC:digest_align_annotate (693); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/ff86f834725ffdd9ff94625e00beb8] ~> TaskHandler[id: 703; name: POREC:digest_align_annotate (694); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/297165e89ca010f5ace7963b8f116d] ~> TaskHandler[id: 706; name: POREC:digest_align_annotate (697); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/799cedf25c24afb1922ec0cb74a444] ~> TaskHandler[id: 705; name: POREC:digest_align_annotate (696); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/6217b7e76f6f4f56c6fe6647a81efb] ~> TaskHandler[id: 707; name: POREC:digest_align_annotate (698); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/faf0ed77e8ec2dbd06371625d5dc3b] ~> TaskHandler[id: 708; name: POREC:digest_align_annotate (699); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/dfe0e74bb89e503c3cffb6d875cccc] ~> TaskHandler[id: 709; name: POREC:digest_align_annotate (700); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3506adbb7cf5d8ceec843cf3b16fa4] .. remaining tasks omitted. Aug-17 17:55:56.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 698; name: POREC:digest_align_annotate (689); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/972ecdbc1fe8ae9270c9b53dcb1741] Aug-17 17:55:56.654 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (689)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/972ecdbc1fe8ae9270c9b53dcb1741/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:55:56.655 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:55:56.660 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:55:56.660 [Task submitter] INFO nextflow.Session - [18/e79191] Submitted process > POREC:digest_align_annotate (690) Aug-17 17:57:35.161 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 699; name: POREC:digest_align_annotate (690); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/e79191334832294006b4966a8325a8] Aug-17 17:57:35.162 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (690)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/e79191334832294006b4966a8325a8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:57:35.162 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:57:35.189 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:57:35.189 [Task submitter] INFO nextflow.Session - [df/bd470e] Submitted process > POREC:digest_align_annotate (691) Aug-17 17:58:41.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 700; name: POREC:digest_align_annotate (691); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/bd470efa1252dc72d5e40312638f0d] Aug-17 17:59:21.994 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 700; name: POREC:digest_align_annotate (691); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/bd470efa1252dc72d5e40312638f0d] Aug-17 17:59:21.994 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (691)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/bd470efa1252dc72d5e40312638f0d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 17:59:21.995 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 17:59:22.000 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 17:59:22.000 [Task submitter] INFO nextflow.Session - [03/2c231d] Submitted process > POREC:digest_align_annotate (692) Aug-17 18:00:50.270 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 702; name: POREC:digest_align_annotate (693); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/ff86f834725ffdd9ff94625e00beb8] ~> TaskHandler[id: 703; name: POREC:digest_align_annotate (694); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/297165e89ca010f5ace7963b8f116d] ~> TaskHandler[id: 706; name: POREC:digest_align_annotate (697); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/799cedf25c24afb1922ec0cb74a444] ~> TaskHandler[id: 705; name: POREC:digest_align_annotate (696); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/6217b7e76f6f4f56c6fe6647a81efb] ~> TaskHandler[id: 707; name: POREC:digest_align_annotate (698); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/faf0ed77e8ec2dbd06371625d5dc3b] ~> TaskHandler[id: 708; name: POREC:digest_align_annotate (699); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/dfe0e74bb89e503c3cffb6d875cccc] ~> TaskHandler[id: 709; name: POREC:digest_align_annotate (700); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3506adbb7cf5d8ceec843cf3b16fa4] ~> TaskHandler[id: 710; name: POREC:digest_align_annotate (701); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f11b2ae350023daccc960c73ed6448] ~> TaskHandler[id: 741; name: POREC:digest_align_annotate (732); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/cb5644960880cc99892ec4b5fe370d] ~> TaskHandler[id: 711; name: POREC:digest_align_annotate (702); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/3794e86735ef7cf264afb544bb40c8] .. remaining tasks omitted. Aug-17 18:01:13.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 701; name: POREC:digest_align_annotate (692); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/2c231d5d4c788f770455162c5767a6] Aug-17 18:01:13.620 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (692)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/2c231d5d4c788f770455162c5767a6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:01:13.622 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:01:13.633 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:01:13.633 [Task submitter] INFO nextflow.Session - [12/ff86f8] Submitted process > POREC:digest_align_annotate (693) Aug-17 18:03:05.883 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 702; name: POREC:digest_align_annotate (693); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/ff86f834725ffdd9ff94625e00beb8] Aug-17 18:03:05.884 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (693)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/ff86f834725ffdd9ff94625e00beb8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:03:05.888 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:03:05.918 [Task submitter] INFO nextflow.Session - [1b/297165] Submitted process > POREC:digest_align_annotate (694) Aug-17 18:03:05.919 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:03:41.731 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 703; name: POREC:digest_align_annotate (694); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/297165e89ca010f5ace7963b8f116d] Aug-17 18:04:52.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 703; name: POREC:digest_align_annotate (694); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/297165e89ca010f5ace7963b8f116d] Aug-17 18:04:52.337 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (694)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/297165e89ca010f5ace7963b8f116d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:04:52.338 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:04:52.341 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:04:52.341 [Task submitter] INFO nextflow.Session - [ab/799ced] Submitted process > POREC:digest_align_annotate (697) Aug-17 18:05:50.519 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 705; name: POREC:digest_align_annotate (696); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/6217b7e76f6f4f56c6fe6647a81efb] ~> TaskHandler[id: 707; name: POREC:digest_align_annotate (698); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/faf0ed77e8ec2dbd06371625d5dc3b] ~> TaskHandler[id: 708; name: POREC:digest_align_annotate (699); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/dfe0e74bb89e503c3cffb6d875cccc] ~> TaskHandler[id: 709; name: POREC:digest_align_annotate (700); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3506adbb7cf5d8ceec843cf3b16fa4] ~> TaskHandler[id: 710; name: POREC:digest_align_annotate (701); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f11b2ae350023daccc960c73ed6448] ~> TaskHandler[id: 741; name: POREC:digest_align_annotate (732); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/cb5644960880cc99892ec4b5fe370d] ~> TaskHandler[id: 711; name: POREC:digest_align_annotate (702); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/3794e86735ef7cf264afb544bb40c8] ~> TaskHandler[id: 713; name: POREC:digest_align_annotate (704); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/767de9e02552aa497cce8059cd81c3] ~> TaskHandler[id: 714; name: POREC:digest_align_annotate (705); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/4411c0010a8a91481216521010c103] ~> TaskHandler[id: 715; name: POREC:digest_align_annotate (706); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/22b98253d4691be7ceaab3a22db303] .. remaining tasks omitted. Aug-17 18:06:29.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 706; name: POREC:digest_align_annotate (697); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/799cedf25c24afb1922ec0cb74a444] Aug-17 18:06:29.799 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (697)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/799cedf25c24afb1922ec0cb74a444/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:06:29.800 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:06:29.806 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:06:29.806 [Task submitter] INFO nextflow.Session - [80/6217b7] Submitted process > POREC:digest_align_annotate (696) Aug-17 18:08:08.563 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 705; name: POREC:digest_align_annotate (696); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/6217b7e76f6f4f56c6fe6647a81efb] Aug-17 18:08:08.564 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (696)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/6217b7e76f6f4f56c6fe6647a81efb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:08:08.565 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:08:08.569 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:08:08.569 [Task submitter] INFO nextflow.Session - [d8/faf0ed] Submitted process > POREC:digest_align_annotate (698) Aug-17 18:08:41.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 707; name: POREC:digest_align_annotate (698); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/faf0ed77e8ec2dbd06371625d5dc3b] Aug-17 18:09:46.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 707; name: POREC:digest_align_annotate (698); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/faf0ed77e8ec2dbd06371625d5dc3b] Aug-17 18:09:46.850 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (698)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/faf0ed77e8ec2dbd06371625d5dc3b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:09:46.851 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:09:46.856 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:09:46.856 [Task submitter] INFO nextflow.Session - [9e/dfe0e7] Submitted process > POREC:digest_align_annotate (699) Aug-17 18:10:51.039 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 709; name: POREC:digest_align_annotate (700); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3506adbb7cf5d8ceec843cf3b16fa4] ~> TaskHandler[id: 710; name: POREC:digest_align_annotate (701); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f11b2ae350023daccc960c73ed6448] ~> TaskHandler[id: 741; name: POREC:digest_align_annotate (732); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/cb5644960880cc99892ec4b5fe370d] ~> TaskHandler[id: 711; name: POREC:digest_align_annotate (702); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/3794e86735ef7cf264afb544bb40c8] ~> TaskHandler[id: 713; name: POREC:digest_align_annotate (704); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/767de9e02552aa497cce8059cd81c3] ~> TaskHandler[id: 714; name: POREC:digest_align_annotate (705); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/4411c0010a8a91481216521010c103] ~> TaskHandler[id: 715; name: POREC:digest_align_annotate (706); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/22b98253d4691be7ceaab3a22db303] ~> TaskHandler[id: 716; name: POREC:digest_align_annotate (707); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/82b146030842f424e7cf311b3278f4] ~> TaskHandler[id: 717; name: POREC:digest_align_annotate (708); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/26f5be0bd585c5b9eafba427a28a30] ~> TaskHandler[id: 718; name: POREC:digest_align_annotate (709); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/56055e72ec509b68fdc91bcbec3749] .. remaining tasks omitted. Aug-17 18:11:24.427 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 708; name: POREC:digest_align_annotate (699); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/dfe0e74bb89e503c3cffb6d875cccc] Aug-17 18:11:24.427 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (699)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/dfe0e74bb89e503c3cffb6d875cccc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:11:24.428 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:11:24.433 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:11:24.433 [Task submitter] INFO nextflow.Session - [11/3506ad] Submitted process > POREC:digest_align_annotate (700) Aug-17 18:12:58.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 709; name: POREC:digest_align_annotate (700); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3506adbb7cf5d8ceec843cf3b16fa4] Aug-17 18:12:58.543 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (700)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3506adbb7cf5d8ceec843cf3b16fa4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:12:58.544 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:12:58.550 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:12:58.550 [Task submitter] INFO nextflow.Session - [82/f11b2a] Submitted process > POREC:digest_align_annotate (701) Aug-17 18:13:41.888 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 710; name: POREC:digest_align_annotate (701); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f11b2ae350023daccc960c73ed6448] Aug-17 18:14:28.603 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 710; name: POREC:digest_align_annotate (701); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f11b2ae350023daccc960c73ed6448] Aug-17 18:14:28.603 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (701)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f11b2ae350023daccc960c73ed6448/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:14:28.603 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:14:28.644 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:14:28.645 [Task submitter] INFO nextflow.Session - [ab/cb5644] Submitted process > POREC:digest_align_annotate (732) Aug-17 18:15:51.890 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 711; name: POREC:digest_align_annotate (702); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/3794e86735ef7cf264afb544bb40c8] ~> TaskHandler[id: 713; name: POREC:digest_align_annotate (704); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/767de9e02552aa497cce8059cd81c3] ~> TaskHandler[id: 714; name: POREC:digest_align_annotate (705); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/4411c0010a8a91481216521010c103] ~> TaskHandler[id: 715; name: POREC:digest_align_annotate (706); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/22b98253d4691be7ceaab3a22db303] ~> TaskHandler[id: 716; name: POREC:digest_align_annotate (707); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/82b146030842f424e7cf311b3278f4] ~> TaskHandler[id: 717; name: POREC:digest_align_annotate (708); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/26f5be0bd585c5b9eafba427a28a30] ~> TaskHandler[id: 718; name: POREC:digest_align_annotate (709); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/56055e72ec509b68fdc91bcbec3749] ~> TaskHandler[id: 719; name: POREC:digest_align_annotate (710); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/3c40732bb308f3df5e4d5c2bfa96f4] ~> TaskHandler[id: 720; name: POREC:digest_align_annotate (711); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/68385b9eebdb18abcb868d3dde1cd5] ~> TaskHandler[id: 722; name: POREC:digest_align_annotate (713); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/7c59ded652dbbb8cccdfd57c023650] .. remaining tasks omitted. Aug-17 18:16:14.323 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 741; name: POREC:digest_align_annotate (732); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/cb5644960880cc99892ec4b5fe370d] Aug-17 18:16:14.324 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (732)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/cb5644960880cc99892ec4b5fe370d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:16:14.325 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:16:14.365 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:16:14.365 [Task submitter] INFO nextflow.Session - [fe/3794e8] Submitted process > POREC:digest_align_annotate (702) Aug-17 18:17:43.786 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 711; name: POREC:digest_align_annotate (702); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/3794e86735ef7cf264afb544bb40c8] Aug-17 18:17:43.787 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (702)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/3794e86735ef7cf264afb544bb40c8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:17:43.788 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:17:43.835 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:17:43.835 [Task submitter] INFO nextflow.Session - [bc/767de9] Submitted process > POREC:digest_align_annotate (704) Aug-17 18:18:41.955 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 713; name: POREC:digest_align_annotate (704); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/767de9e02552aa497cce8059cd81c3] Aug-17 18:19:11.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 713; name: POREC:digest_align_annotate (704); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/767de9e02552aa497cce8059cd81c3] Aug-17 18:19:11.068 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (704)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/767de9e02552aa497cce8059cd81c3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:19:11.068 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:19:11.083 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:19:11.083 [Task submitter] INFO nextflow.Session - [05/4411c0] Submitted process > POREC:digest_align_annotate (705) Aug-17 18:20:50.291 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 714; name: POREC:digest_align_annotate (705); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/4411c0010a8a91481216521010c103] Aug-17 18:20:50.292 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (705)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/4411c0010a8a91481216521010c103/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:20:50.292 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:20:50.299 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:20:50.299 [Task submitter] INFO nextflow.Session - [67/22b982] Submitted process > POREC:digest_align_annotate (706) Aug-17 18:20:52.308 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 716; name: POREC:digest_align_annotate (707); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/82b146030842f424e7cf311b3278f4] ~> TaskHandler[id: 717; name: POREC:digest_align_annotate (708); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/26f5be0bd585c5b9eafba427a28a30] ~> TaskHandler[id: 718; name: POREC:digest_align_annotate (709); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/56055e72ec509b68fdc91bcbec3749] ~> TaskHandler[id: 719; name: POREC:digest_align_annotate (710); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/3c40732bb308f3df5e4d5c2bfa96f4] ~> TaskHandler[id: 720; name: POREC:digest_align_annotate (711); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/68385b9eebdb18abcb868d3dde1cd5] ~> TaskHandler[id: 722; name: POREC:digest_align_annotate (713); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/7c59ded652dbbb8cccdfd57c023650] ~> TaskHandler[id: 724; name: POREC:digest_align_annotate (715); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/01ed4f8edd3984eaaeb5ea7a0d67e7] ~> TaskHandler[id: 753; name: POREC:digest_align_annotate (744); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/468adc0e65217af0b8cb795442dd5b] ~> TaskHandler[id: 723; name: POREC:digest_align_annotate (714); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/be347f1f9154b8153181d8e2b3d219] ~> TaskHandler[id: 725; name: POREC:digest_align_annotate (716); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/6850ca07f248ff08adcfec15cdc8fa] .. remaining tasks omitted. Aug-17 18:22:28.751 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 715; name: POREC:digest_align_annotate (706); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/22b98253d4691be7ceaab3a22db303] Aug-17 18:22:28.752 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (706)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/22b98253d4691be7ceaab3a22db303/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:22:28.752 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:22:28.773 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:22:28.773 [Task submitter] INFO nextflow.Session - [9c/82b146] Submitted process > POREC:digest_align_annotate (707) Aug-17 18:23:42.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 716; name: POREC:digest_align_annotate (707); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/82b146030842f424e7cf311b3278f4] Aug-17 18:24:07.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 716; name: POREC:digest_align_annotate (707); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/82b146030842f424e7cf311b3278f4] Aug-17 18:24:07.778 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (707)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/82b146030842f424e7cf311b3278f4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:24:07.778 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:24:07.782 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:24:07.783 [Task submitter] INFO nextflow.Session - [c4/26f5be] Submitted process > POREC:digest_align_annotate (708) Aug-17 18:25:35.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 717; name: POREC:digest_align_annotate (708); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/26f5be0bd585c5b9eafba427a28a30] Aug-17 18:25:35.694 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (708)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/26f5be0bd585c5b9eafba427a28a30/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:25:35.695 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:25:35.699 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:25:35.699 [Task submitter] INFO nextflow.Session - [5f/56055e] Submitted process > POREC:digest_align_annotate (709) Aug-17 18:25:52.761 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 719; name: POREC:digest_align_annotate (710); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/3c40732bb308f3df5e4d5c2bfa96f4] ~> TaskHandler[id: 720; name: POREC:digest_align_annotate (711); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/68385b9eebdb18abcb868d3dde1cd5] ~> TaskHandler[id: 722; name: POREC:digest_align_annotate (713); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/7c59ded652dbbb8cccdfd57c023650] ~> TaskHandler[id: 724; name: POREC:digest_align_annotate (715); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/01ed4f8edd3984eaaeb5ea7a0d67e7] ~> TaskHandler[id: 753; name: POREC:digest_align_annotate (744); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/468adc0e65217af0b8cb795442dd5b] ~> TaskHandler[id: 723; name: POREC:digest_align_annotate (714); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/be347f1f9154b8153181d8e2b3d219] ~> TaskHandler[id: 725; name: POREC:digest_align_annotate (716); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/6850ca07f248ff08adcfec15cdc8fa] ~> TaskHandler[id: 726; name: POREC:digest_align_annotate (717); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/149abbbcc58e36b4e774d5cb6b4ab3] ~> TaskHandler[id: 721; name: POREC:digest_align_annotate (712); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/3f173780b1637f742a6394867bf753] ~> TaskHandler[id: 727; name: POREC:digest_align_annotate (718); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d30e49b78224e27fbaaf772645a9f5] .. remaining tasks omitted. Aug-17 18:27:02.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 718; name: POREC:digest_align_annotate (709); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/56055e72ec509b68fdc91bcbec3749] Aug-17 18:27:02.045 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (709)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/56055e72ec509b68fdc91bcbec3749/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:27:02.052 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:27:02.062 [Task submitter] INFO nextflow.Session - [4f/3c4073] Submitted process > POREC:digest_align_annotate (710) Aug-17 18:27:02.063 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:28:26.180 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 719; name: POREC:digest_align_annotate (710); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/3c40732bb308f3df5e4d5c2bfa96f4] Aug-17 18:28:26.181 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (710)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/3c40732bb308f3df5e4d5c2bfa96f4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:28:26.183 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:28:26.188 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:28:26.189 [Task submitter] INFO nextflow.Session - [72/68385b] Submitted process > POREC:digest_align_annotate (711) Aug-17 18:28:42.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 720; name: POREC:digest_align_annotate (711); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/68385b9eebdb18abcb868d3dde1cd5] Aug-17 18:29:54.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 720; name: POREC:digest_align_annotate (711); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/68385b9eebdb18abcb868d3dde1cd5] Aug-17 18:29:54.432 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (711)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/68385b9eebdb18abcb868d3dde1cd5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:29:54.434 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:29:54.439 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:29:54.439 [Task submitter] INFO nextflow.Session - [ad/7c59de] Submitted process > POREC:digest_align_annotate (713) Aug-17 18:30:53.626 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 724; name: POREC:digest_align_annotate (715); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/01ed4f8edd3984eaaeb5ea7a0d67e7] ~> TaskHandler[id: 753; name: POREC:digest_align_annotate (744); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/468adc0e65217af0b8cb795442dd5b] ~> TaskHandler[id: 723; name: POREC:digest_align_annotate (714); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/be347f1f9154b8153181d8e2b3d219] ~> TaskHandler[id: 725; name: POREC:digest_align_annotate (716); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/6850ca07f248ff08adcfec15cdc8fa] ~> TaskHandler[id: 726; name: POREC:digest_align_annotate (717); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/149abbbcc58e36b4e774d5cb6b4ab3] ~> TaskHandler[id: 721; name: POREC:digest_align_annotate (712); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/3f173780b1637f742a6394867bf753] ~> TaskHandler[id: 727; name: POREC:digest_align_annotate (718); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d30e49b78224e27fbaaf772645a9f5] ~> TaskHandler[id: 728; name: POREC:digest_align_annotate (719); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/a01ff25f1ade67f3292be7573099f4] ~> TaskHandler[id: 760; name: POREC:digest_align_annotate (751); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/0ab7019b2bedb2aba946cb7c6ef5bb] ~> TaskHandler[id: 729; name: POREC:digest_align_annotate (720); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/0c5f1816a88b56fc56a5e9396e69c6] .. remaining tasks omitted. Aug-17 18:31:17.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 722; name: POREC:digest_align_annotate (713); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/7c59ded652dbbb8cccdfd57c023650] Aug-17 18:31:17.630 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (713)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/7c59ded652dbbb8cccdfd57c023650/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:31:17.630 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:31:17.649 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:31:17.649 [Task submitter] INFO nextflow.Session - [f3/01ed4f] Submitted process > POREC:digest_align_annotate (715) Aug-17 18:32:36.980 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 724; name: POREC:digest_align_annotate (715); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/01ed4f8edd3984eaaeb5ea7a0d67e7] Aug-17 18:32:36.982 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (715)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/01ed4f8edd3984eaaeb5ea7a0d67e7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:32:36.983 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:32:36.988 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:32:36.988 [Task submitter] INFO nextflow.Session - [92/468adc] Submitted process > POREC:digest_align_annotate (744) Aug-17 18:33:42.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 753; name: POREC:digest_align_annotate (744); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/468adc0e65217af0b8cb795442dd5b] Aug-17 18:34:14.199 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 753; name: POREC:digest_align_annotate (744); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/468adc0e65217af0b8cb795442dd5b] Aug-17 18:34:14.200 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (744)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/468adc0e65217af0b8cb795442dd5b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:34:14.201 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:34:14.215 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:34:14.215 [Task submitter] INFO nextflow.Session - [e5/be347f] Submitted process > POREC:digest_align_annotate (714) Aug-17 18:35:54.546 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 725; name: POREC:digest_align_annotate (716); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/6850ca07f248ff08adcfec15cdc8fa] ~> TaskHandler[id: 726; name: POREC:digest_align_annotate (717); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/149abbbcc58e36b4e774d5cb6b4ab3] ~> TaskHandler[id: 721; name: POREC:digest_align_annotate (712); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/3f173780b1637f742a6394867bf753] ~> TaskHandler[id: 727; name: POREC:digest_align_annotate (718); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d30e49b78224e27fbaaf772645a9f5] ~> TaskHandler[id: 728; name: POREC:digest_align_annotate (719); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/a01ff25f1ade67f3292be7573099f4] ~> TaskHandler[id: 760; name: POREC:digest_align_annotate (751); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/0ab7019b2bedb2aba946cb7c6ef5bb] ~> TaskHandler[id: 729; name: POREC:digest_align_annotate (720); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/0c5f1816a88b56fc56a5e9396e69c6] ~> TaskHandler[id: 730; name: POREC:digest_align_annotate (721); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/fe935c1e17e0321cdba82245612b64] ~> TaskHandler[id: 731; name: POREC:digest_align_annotate (722); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/accb7022765716afb714874ea60738] ~> TaskHandler[id: 733; name: POREC:digest_align_annotate (724); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/33d8c3ea93f3f577c774dcba69feaf] .. remaining tasks omitted. Aug-17 18:35:57.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 723; name: POREC:digest_align_annotate (714); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/be347f1f9154b8153181d8e2b3d219] Aug-17 18:35:57.178 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (714)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/be347f1f9154b8153181d8e2b3d219/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:35:57.179 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:35:57.185 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:35:57.186 [Task submitter] INFO nextflow.Session - [af/6850ca] Submitted process > POREC:digest_align_annotate (716) Aug-17 18:37:10.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 725; name: POREC:digest_align_annotate (716); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/6850ca07f248ff08adcfec15cdc8fa] Aug-17 18:37:10.552 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (716)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/6850ca07f248ff08adcfec15cdc8fa/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:37:10.554 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:37:10.560 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:37:10.560 [Task submitter] INFO nextflow.Session - [3a/149abb] Submitted process > POREC:digest_align_annotate (717) Aug-17 18:38:32.519 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 726; name: POREC:digest_align_annotate (717); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/149abbbcc58e36b4e774d5cb6b4ab3] Aug-17 18:38:32.551 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (717)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/149abbbcc58e36b4e774d5cb6b4ab3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:38:32.551 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:38:32.557 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:38:32.557 [Task submitter] INFO nextflow.Session - [94/3f1737] Submitted process > POREC:digest_align_annotate (712) Aug-17 18:38:42.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 721; name: POREC:digest_align_annotate (712); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/3f173780b1637f742a6394867bf753] Aug-17 18:40:23.365 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 721; name: POREC:digest_align_annotate (712); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/3f173780b1637f742a6394867bf753] Aug-17 18:40:23.366 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (712)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/3f173780b1637f742a6394867bf753/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:40:23.367 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:40:23.371 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:40:23.371 [Task submitter] INFO nextflow.Session - [77/d30e49] Submitted process > POREC:digest_align_annotate (718) Aug-17 18:40:55.477 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 728; name: POREC:digest_align_annotate (719); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/a01ff25f1ade67f3292be7573099f4] ~> TaskHandler[id: 760; name: POREC:digest_align_annotate (751); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/0ab7019b2bedb2aba946cb7c6ef5bb] ~> TaskHandler[id: 729; name: POREC:digest_align_annotate (720); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/0c5f1816a88b56fc56a5e9396e69c6] ~> TaskHandler[id: 730; name: POREC:digest_align_annotate (721); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/fe935c1e17e0321cdba82245612b64] ~> TaskHandler[id: 731; name: POREC:digest_align_annotate (722); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/accb7022765716afb714874ea60738] ~> TaskHandler[id: 733; name: POREC:digest_align_annotate (724); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/33d8c3ea93f3f577c774dcba69feaf] ~> TaskHandler[id: 732; name: POREC:digest_align_annotate (723); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ea651e9a8aec6185d273cdb174f1ae] ~> TaskHandler[id: 734; name: POREC:digest_align_annotate (725); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/777d132603adecc3238e0dad5ec5c5] ~> TaskHandler[id: 735; name: POREC:digest_align_annotate (726); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/5470d1a603a980260b4447bb2a14f5] ~> TaskHandler[id: 736; name: POREC:digest_align_annotate (727); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/ec701a15ba79f48e7e84a0cfd10684] .. remaining tasks omitted. Aug-17 18:42:05.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 727; name: POREC:digest_align_annotate (718); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d30e49b78224e27fbaaf772645a9f5] Aug-17 18:42:05.691 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (718)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/d30e49b78224e27fbaaf772645a9f5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:42:05.692 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:42:05.695 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:42:05.695 [Task submitter] INFO nextflow.Session - [8a/a01ff2] Submitted process > POREC:digest_align_annotate (719) Aug-17 18:43:42.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 728; name: POREC:digest_align_annotate (719); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/a01ff25f1ade67f3292be7573099f4] Aug-17 18:43:51.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 728; name: POREC:digest_align_annotate (719); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/a01ff25f1ade67f3292be7573099f4] Aug-17 18:43:51.548 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (719)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/a01ff25f1ade67f3292be7573099f4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:43:51.548 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:43:51.568 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:43:51.568 [Task submitter] INFO nextflow.Session - [c7/0ab701] Submitted process > POREC:digest_align_annotate (751) Aug-17 18:45:39.104 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 760; name: POREC:digest_align_annotate (751); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/0ab7019b2bedb2aba946cb7c6ef5bb] Aug-17 18:45:39.142 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (751)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/0ab7019b2bedb2aba946cb7c6ef5bb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:45:39.143 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:45:39.146 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:45:39.147 [Task submitter] INFO nextflow.Session - [b4/0c5f18] Submitted process > POREC:digest_align_annotate (720) Aug-17 18:45:56.206 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 730; name: POREC:digest_align_annotate (721); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/fe935c1e17e0321cdba82245612b64] ~> TaskHandler[id: 731; name: POREC:digest_align_annotate (722); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/accb7022765716afb714874ea60738] ~> TaskHandler[id: 733; name: POREC:digest_align_annotate (724); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/33d8c3ea93f3f577c774dcba69feaf] ~> TaskHandler[id: 732; name: POREC:digest_align_annotate (723); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ea651e9a8aec6185d273cdb174f1ae] ~> TaskHandler[id: 734; name: POREC:digest_align_annotate (725); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/777d132603adecc3238e0dad5ec5c5] ~> TaskHandler[id: 735; name: POREC:digest_align_annotate (726); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/5470d1a603a980260b4447bb2a14f5] ~> TaskHandler[id: 736; name: POREC:digest_align_annotate (727); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/ec701a15ba79f48e7e84a0cfd10684] ~> TaskHandler[id: 737; name: POREC:digest_align_annotate (728); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f4fa670aa9687d4d4029db87303d77] ~> TaskHandler[id: 738; name: POREC:digest_align_annotate (729); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/cb2ef4be2017346c16e7ce4fa6233b] ~> TaskHandler[id: 739; name: POREC:digest_align_annotate (730); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/59429caa9db601c798ab582bee809b] .. remaining tasks omitted. Aug-17 18:47:25.836 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 729; name: POREC:digest_align_annotate (720); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/0c5f1816a88b56fc56a5e9396e69c6] Aug-17 18:47:25.837 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (720)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/0c5f1816a88b56fc56a5e9396e69c6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:47:25.837 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:47:25.842 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:47:25.842 [Task submitter] INFO nextflow.Session - [91/fe935c] Submitted process > POREC:digest_align_annotate (721) Aug-17 18:48:42.330 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 730; name: POREC:digest_align_annotate (721); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/fe935c1e17e0321cdba82245612b64] Aug-17 18:49:17.881 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 730; name: POREC:digest_align_annotate (721); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/fe935c1e17e0321cdba82245612b64] Aug-17 18:49:17.882 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (721)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/fe935c1e17e0321cdba82245612b64/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:49:17.883 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:49:17.889 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:49:17.889 [Task submitter] INFO nextflow.Session - [69/accb70] Submitted process > POREC:digest_align_annotate (722) Aug-17 18:50:57.196 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 733; name: POREC:digest_align_annotate (724); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/33d8c3ea93f3f577c774dcba69feaf] ~> TaskHandler[id: 732; name: POREC:digest_align_annotate (723); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ea651e9a8aec6185d273cdb174f1ae] ~> TaskHandler[id: 734; name: POREC:digest_align_annotate (725); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/777d132603adecc3238e0dad5ec5c5] ~> TaskHandler[id: 735; name: POREC:digest_align_annotate (726); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/5470d1a603a980260b4447bb2a14f5] ~> TaskHandler[id: 736; name: POREC:digest_align_annotate (727); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/ec701a15ba79f48e7e84a0cfd10684] ~> TaskHandler[id: 737; name: POREC:digest_align_annotate (728); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f4fa670aa9687d4d4029db87303d77] ~> TaskHandler[id: 738; name: POREC:digest_align_annotate (729); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/cb2ef4be2017346c16e7ce4fa6233b] ~> TaskHandler[id: 739; name: POREC:digest_align_annotate (730); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/59429caa9db601c798ab582bee809b] ~> TaskHandler[id: 740; name: POREC:digest_align_annotate (731); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/f3b283913da42815716440cdb20df1] ~> TaskHandler[id: 742; name: POREC:digest_align_annotate (733); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/e0dfc07107beade1517ba388c6e49a] .. remaining tasks omitted. Aug-17 18:50:58.994 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 731; name: POREC:digest_align_annotate (722); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/accb7022765716afb714874ea60738] Aug-17 18:50:58.995 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (722)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/accb7022765716afb714874ea60738/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:50:59.000 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:50:59.005 [Task submitter] INFO nextflow.Session - [f2/33d8c3] Submitted process > POREC:digest_align_annotate (724) Aug-17 18:50:59.005 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:52:29.670 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 733; name: POREC:digest_align_annotate (724); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/33d8c3ea93f3f577c774dcba69feaf] Aug-17 18:52:29.672 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (724)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/33d8c3ea93f3f577c774dcba69feaf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:52:29.673 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:52:29.678 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:52:29.679 [Task submitter] INFO nextflow.Session - [35/ea651e] Submitted process > POREC:digest_align_annotate (723) Aug-17 18:53:42.369 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 732; name: POREC:digest_align_annotate (723); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ea651e9a8aec6185d273cdb174f1ae] Aug-17 18:53:59.219 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 732; name: POREC:digest_align_annotate (723); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ea651e9a8aec6185d273cdb174f1ae] Aug-17 18:53:59.220 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (723)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ea651e9a8aec6185d273cdb174f1ae/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:53:59.221 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:53:59.225 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:53:59.225 [Task submitter] INFO nextflow.Session - [22/777d13] Submitted process > POREC:digest_align_annotate (725) Aug-17 18:55:30.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 734; name: POREC:digest_align_annotate (725); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/777d132603adecc3238e0dad5ec5c5] Aug-17 18:55:30.777 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (725)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/777d132603adecc3238e0dad5ec5c5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:55:30.778 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:55:30.781 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:55:30.801 [Task submitter] INFO nextflow.Session - [92/5470d1] Submitted process > POREC:digest_align_annotate (726) Aug-17 18:55:57.893 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 736; name: POREC:digest_align_annotate (727); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/ec701a15ba79f48e7e84a0cfd10684] ~> TaskHandler[id: 737; name: POREC:digest_align_annotate (728); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f4fa670aa9687d4d4029db87303d77] ~> TaskHandler[id: 738; name: POREC:digest_align_annotate (729); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/cb2ef4be2017346c16e7ce4fa6233b] ~> TaskHandler[id: 739; name: POREC:digest_align_annotate (730); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/59429caa9db601c798ab582bee809b] ~> TaskHandler[id: 740; name: POREC:digest_align_annotate (731); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/f3b283913da42815716440cdb20df1] ~> TaskHandler[id: 742; name: POREC:digest_align_annotate (733); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/e0dfc07107beade1517ba388c6e49a] ~> TaskHandler[id: 743; name: POREC:digest_align_annotate (734); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/532c87992b20731aceea9bcf452e6f] ~> TaskHandler[id: 744; name: POREC:digest_align_annotate (735); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/cbab01cbb6038668070e8e8fe0a9b2] ~> TaskHandler[id: 745; name: POREC:digest_align_annotate (736); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/8f60fc069cee31d2c08b75bf0b00b4] ~> TaskHandler[id: 746; name: POREC:digest_align_annotate (737); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b98e8f84ed5f815bf83be54ca00919] .. remaining tasks omitted. Aug-17 18:57:00.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 735; name: POREC:digest_align_annotate (726); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/5470d1a603a980260b4447bb2a14f5] Aug-17 18:57:00.388 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (726)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/5470d1a603a980260b4447bb2a14f5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:57:00.389 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:57:00.396 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:57:00.397 [Task submitter] INFO nextflow.Session - [50/ec701a] Submitted process > POREC:digest_align_annotate (727) Aug-17 18:58:24.861 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 736; name: POREC:digest_align_annotate (727); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/ec701a15ba79f48e7e84a0cfd10684] Aug-17 18:58:24.861 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (727)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/ec701a15ba79f48e7e84a0cfd10684/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:58:24.862 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:58:24.867 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:58:24.897 [Task submitter] INFO nextflow.Session - [54/f4fa67] Submitted process > POREC:digest_align_annotate (728) Aug-17 18:58:42.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 737; name: POREC:digest_align_annotate (728); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f4fa670aa9687d4d4029db87303d77] Aug-17 18:59:49.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 737; name: POREC:digest_align_annotate (728); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f4fa670aa9687d4d4029db87303d77] Aug-17 18:59:49.627 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (728)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f4fa670aa9687d4d4029db87303d77/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 18:59:49.628 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 18:59:49.630 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 18:59:49.630 [Task submitter] INFO nextflow.Session - [c8/cb2ef4] Submitted process > POREC:digest_align_annotate (729) Aug-17 19:00:58.834 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 739; name: POREC:digest_align_annotate (730); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/59429caa9db601c798ab582bee809b] ~> TaskHandler[id: 740; name: POREC:digest_align_annotate (731); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/f3b283913da42815716440cdb20df1] ~> TaskHandler[id: 742; name: POREC:digest_align_annotate (733); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/e0dfc07107beade1517ba388c6e49a] ~> TaskHandler[id: 743; name: POREC:digest_align_annotate (734); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/532c87992b20731aceea9bcf452e6f] ~> TaskHandler[id: 744; name: POREC:digest_align_annotate (735); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/cbab01cbb6038668070e8e8fe0a9b2] ~> TaskHandler[id: 745; name: POREC:digest_align_annotate (736); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/8f60fc069cee31d2c08b75bf0b00b4] ~> TaskHandler[id: 746; name: POREC:digest_align_annotate (737); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b98e8f84ed5f815bf83be54ca00919] ~> TaskHandler[id: 747; name: POREC:digest_align_annotate (738); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/e50c4e1530948c1bcde41cd4424e38] ~> TaskHandler[id: 748; name: POREC:digest_align_annotate (739); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/52614e07b392028e417f518062a9b0] ~> TaskHandler[id: 749; name: POREC:digest_align_annotate (740); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/27c72e837d32da455e76431e43fd9f] .. remaining tasks omitted. Aug-17 19:01:17.114 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 738; name: POREC:digest_align_annotate (729); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/cb2ef4be2017346c16e7ce4fa6233b] Aug-17 19:01:17.140 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (729)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/cb2ef4be2017346c16e7ce4fa6233b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:01:17.142 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:01:17.147 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:01:17.147 [Task submitter] INFO nextflow.Session - [a3/59429c] Submitted process > POREC:digest_align_annotate (730) Aug-17 19:03:00.435 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 739; name: POREC:digest_align_annotate (730); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/59429caa9db601c798ab582bee809b] Aug-17 19:03:00.436 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (730)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/59429caa9db601c798ab582bee809b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:03:00.436 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:03:00.441 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:03:00.442 [Task submitter] INFO nextflow.Session - [37/f3b283] Submitted process > POREC:digest_align_annotate (731) Aug-17 19:03:42.384 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 740; name: POREC:digest_align_annotate (731); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/f3b283913da42815716440cdb20df1] Aug-17 19:04:27.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 740; name: POREC:digest_align_annotate (731); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/f3b283913da42815716440cdb20df1] Aug-17 19:04:27.561 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (731)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/f3b283913da42815716440cdb20df1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:04:27.562 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:04:27.566 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:04:27.566 [Task submitter] INFO nextflow.Session - [e4/e0dfc0] Submitted process > POREC:digest_align_annotate (733) Aug-17 19:05:54.471 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 742; name: POREC:digest_align_annotate (733); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/e0dfc07107beade1517ba388c6e49a] Aug-17 19:05:54.472 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (733)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/e0dfc07107beade1517ba388c6e49a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:05:54.472 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:05:54.475 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:05:54.539 [Task submitter] INFO nextflow.Session - [e3/532c87] Submitted process > POREC:digest_align_annotate (734) Aug-17 19:05:59.561 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 744; name: POREC:digest_align_annotate (735); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/cbab01cbb6038668070e8e8fe0a9b2] ~> TaskHandler[id: 745; name: POREC:digest_align_annotate (736); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/8f60fc069cee31d2c08b75bf0b00b4] ~> TaskHandler[id: 746; name: POREC:digest_align_annotate (737); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b98e8f84ed5f815bf83be54ca00919] ~> TaskHandler[id: 747; name: POREC:digest_align_annotate (738); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/e50c4e1530948c1bcde41cd4424e38] ~> TaskHandler[id: 748; name: POREC:digest_align_annotate (739); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/52614e07b392028e417f518062a9b0] ~> TaskHandler[id: 749; name: POREC:digest_align_annotate (740); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/27c72e837d32da455e76431e43fd9f] ~> TaskHandler[id: 750; name: POREC:digest_align_annotate (741); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e478448b6674d6f2d3ed9d28e22728] ~> TaskHandler[id: 751; name: POREC:digest_align_annotate (742); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/99dd65c6f4096ae036798cd43242e5] ~> TaskHandler[id: 752; name: POREC:digest_align_annotate (743); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d92c1d9c407f8daa4bd5f76c9a41ba] ~> TaskHandler[id: 754; name: POREC:digest_align_annotate (745); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/496640502619d4eeaa38d7c932300e] .. remaining tasks omitted. Aug-17 19:07:22.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 743; name: POREC:digest_align_annotate (734); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/532c87992b20731aceea9bcf452e6f] Aug-17 19:07:22.746 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (734)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/532c87992b20731aceea9bcf452e6f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:07:22.747 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:07:22.752 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:07:22.753 [Task submitter] INFO nextflow.Session - [25/cbab01] Submitted process > POREC:digest_align_annotate (735) Aug-17 19:08:42.456 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 744; name: POREC:digest_align_annotate (735); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/cbab01cbb6038668070e8e8fe0a9b2] Aug-17 19:08:51.610 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 744; name: POREC:digest_align_annotate (735); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/cbab01cbb6038668070e8e8fe0a9b2] Aug-17 19:08:51.626 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (735)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/cbab01cbb6038668070e8e8fe0a9b2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:08:51.627 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:08:51.632 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:08:51.632 [Task submitter] INFO nextflow.Session - [23/8f60fc] Submitted process > POREC:digest_align_annotate (736) Aug-17 19:10:15.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 745; name: POREC:digest_align_annotate (736); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/8f60fc069cee31d2c08b75bf0b00b4] Aug-17 19:10:15.405 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (736)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/8f60fc069cee31d2c08b75bf0b00b4/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:10:15.406 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:10:15.409 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:10:15.409 [Task submitter] INFO nextflow.Session - [1e/b98e8f] Submitted process > POREC:digest_align_annotate (737) Aug-17 19:11:00.560 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 747; name: POREC:digest_align_annotate (738); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/e50c4e1530948c1bcde41cd4424e38] ~> TaskHandler[id: 748; name: POREC:digest_align_annotate (739); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/52614e07b392028e417f518062a9b0] ~> TaskHandler[id: 749; name: POREC:digest_align_annotate (740); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/27c72e837d32da455e76431e43fd9f] ~> TaskHandler[id: 750; name: POREC:digest_align_annotate (741); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e478448b6674d6f2d3ed9d28e22728] ~> TaskHandler[id: 751; name: POREC:digest_align_annotate (742); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/99dd65c6f4096ae036798cd43242e5] ~> TaskHandler[id: 752; name: POREC:digest_align_annotate (743); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d92c1d9c407f8daa4bd5f76c9a41ba] ~> TaskHandler[id: 754; name: POREC:digest_align_annotate (745); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/496640502619d4eeaa38d7c932300e] ~> TaskHandler[id: 755; name: POREC:digest_align_annotate (746); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/96e2475e90bd59215dbaea03bb274d] ~> TaskHandler[id: 756; name: POREC:digest_align_annotate (747); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/4cdeebaa045cf684a0f2be154863a2] ~> TaskHandler[id: 757; name: POREC:digest_align_annotate (748); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/5a04cfcf5a6e753939e817c29d4dcb] .. remaining tasks omitted. Aug-17 19:11:44.867 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 746; name: POREC:digest_align_annotate (737); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b98e8f84ed5f815bf83be54ca00919] Aug-17 19:11:44.868 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (737)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b98e8f84ed5f815bf83be54ca00919/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:11:44.868 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:11:44.873 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:11:44.873 [Task submitter] INFO nextflow.Session - [55/e50c4e] Submitted process > POREC:digest_align_annotate (738) Aug-17 19:13:14.957 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 747; name: POREC:digest_align_annotate (738); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/e50c4e1530948c1bcde41cd4424e38] Aug-17 19:13:14.958 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (738)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/e50c4e1530948c1bcde41cd4424e38/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:13:14.959 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:13:14.963 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:13:14.963 [Task submitter] INFO nextflow.Session - [61/52614e] Submitted process > POREC:digest_align_annotate (739) Aug-17 19:13:42.491 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 748; name: POREC:digest_align_annotate (739); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/52614e07b392028e417f518062a9b0] Aug-17 19:14:45.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 748; name: POREC:digest_align_annotate (739); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/52614e07b392028e417f518062a9b0] Aug-17 19:14:45.707 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (739)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/52614e07b392028e417f518062a9b0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:14:45.707 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:14:45.713 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:14:45.713 [Task submitter] INFO nextflow.Session - [9b/27c72e] Submitted process > POREC:digest_align_annotate (740) Aug-17 19:16:00.943 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 750; name: POREC:digest_align_annotate (741); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e478448b6674d6f2d3ed9d28e22728] ~> TaskHandler[id: 751; name: POREC:digest_align_annotate (742); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/99dd65c6f4096ae036798cd43242e5] ~> TaskHandler[id: 752; name: POREC:digest_align_annotate (743); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d92c1d9c407f8daa4bd5f76c9a41ba] ~> TaskHandler[id: 754; name: POREC:digest_align_annotate (745); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/496640502619d4eeaa38d7c932300e] ~> TaskHandler[id: 755; name: POREC:digest_align_annotate (746); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/96e2475e90bd59215dbaea03bb274d] ~> TaskHandler[id: 756; name: POREC:digest_align_annotate (747); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/4cdeebaa045cf684a0f2be154863a2] ~> TaskHandler[id: 757; name: POREC:digest_align_annotate (748); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/5a04cfcf5a6e753939e817c29d4dcb] ~> TaskHandler[id: 759; name: POREC:digest_align_annotate (750); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/fba3c24ac069b03bc387fb6fc2ebd2] ~> TaskHandler[id: 758; name: POREC:digest_align_annotate (749); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/1771ffd926d8156b518aed5f2fb04e] ~> TaskHandler[id: 761; name: POREC:digest_align_annotate (752); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/404ee851d26082277236306a032469] .. remaining tasks omitted. Aug-17 19:16:14.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 749; name: POREC:digest_align_annotate (740); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/27c72e837d32da455e76431e43fd9f] Aug-17 19:16:14.647 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (740)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/27c72e837d32da455e76431e43fd9f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:16:14.648 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:16:14.654 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:16:14.654 [Task submitter] INFO nextflow.Session - [d1/e47844] Submitted process > POREC:digest_align_annotate (741) Aug-17 19:17:42.596 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 750; name: POREC:digest_align_annotate (741); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e478448b6674d6f2d3ed9d28e22728] Aug-17 19:17:42.597 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (741)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/e478448b6674d6f2d3ed9d28e22728/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:17:42.598 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:17:42.603 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:17:42.603 [Task submitter] INFO nextflow.Session - [cf/99dd65] Submitted process > POREC:digest_align_annotate (742) Aug-17 19:18:42.501 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 751; name: POREC:digest_align_annotate (742); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/99dd65c6f4096ae036798cd43242e5] Aug-17 19:19:11.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 751; name: POREC:digest_align_annotate (742); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/99dd65c6f4096ae036798cd43242e5] Aug-17 19:19:11.196 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (742)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/99dd65c6f4096ae036798cd43242e5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:19:11.197 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:19:11.201 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:19:11.201 [Task submitter] INFO nextflow.Session - [9c/d92c1d] Submitted process > POREC:digest_align_annotate (743) Aug-17 19:20:58.111 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 752; name: POREC:digest_align_annotate (743); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d92c1d9c407f8daa4bd5f76c9a41ba] Aug-17 19:20:58.112 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (743)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d92c1d9c407f8daa4bd5f76c9a41ba/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:20:58.112 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:20:58.118 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:20:58.118 [Task submitter] INFO nextflow.Session - [f4/496640] Submitted process > POREC:digest_align_annotate (745) Aug-17 19:21:01.134 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 755; name: POREC:digest_align_annotate (746); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/96e2475e90bd59215dbaea03bb274d] ~> TaskHandler[id: 756; name: POREC:digest_align_annotate (747); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/4cdeebaa045cf684a0f2be154863a2] ~> TaskHandler[id: 757; name: POREC:digest_align_annotate (748); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/5a04cfcf5a6e753939e817c29d4dcb] ~> TaskHandler[id: 759; name: POREC:digest_align_annotate (750); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/fba3c24ac069b03bc387fb6fc2ebd2] ~> TaskHandler[id: 758; name: POREC:digest_align_annotate (749); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/1771ffd926d8156b518aed5f2fb04e] ~> TaskHandler[id: 761; name: POREC:digest_align_annotate (752); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/404ee851d26082277236306a032469] ~> TaskHandler[id: 762; name: POREC:digest_align_annotate (753); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3834073582a35775eeb7540cc10078] ~> TaskHandler[id: 793; name: POREC:digest_align_annotate (784); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/74a074793c9edf4bd134de4bee8912] ~> TaskHandler[id: 763; name: POREC:digest_align_annotate (754); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/e39174e2b1e52e65c7c4708bc503cb] ~> TaskHandler[id: 764; name: POREC:digest_align_annotate (755); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/fcd1fb6cbb515b1ff228dca8a393c5] .. remaining tasks omitted. Aug-17 19:22:36.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 754; name: POREC:digest_align_annotate (745); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/496640502619d4eeaa38d7c932300e] Aug-17 19:22:36.603 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (745)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/496640502619d4eeaa38d7c932300e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:22:36.604 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:22:36.616 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:22:36.616 [Task submitter] INFO nextflow.Session - [c7/96e247] Submitted process > POREC:digest_align_annotate (746) Aug-17 19:23:42.589 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 755; name: POREC:digest_align_annotate (746); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/96e2475e90bd59215dbaea03bb274d] Aug-17 19:24:16.520 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 755; name: POREC:digest_align_annotate (746); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/96e2475e90bd59215dbaea03bb274d] Aug-17 19:24:16.521 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (746)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/96e2475e90bd59215dbaea03bb274d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:24:16.521 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:24:16.527 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:24:16.527 [Task submitter] INFO nextflow.Session - [b6/4cdeeb] Submitted process > POREC:digest_align_annotate (747) Aug-17 19:25:44.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 756; name: POREC:digest_align_annotate (747); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/4cdeebaa045cf684a0f2be154863a2] Aug-17 19:25:44.055 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (747)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/4cdeebaa045cf684a0f2be154863a2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:25:44.056 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:25:44.060 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:25:44.060 [Task submitter] INFO nextflow.Session - [02/5a04cf] Submitted process > POREC:digest_align_annotate (748) Aug-17 19:26:02.124 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 759; name: POREC:digest_align_annotate (750); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/fba3c24ac069b03bc387fb6fc2ebd2] ~> TaskHandler[id: 758; name: POREC:digest_align_annotate (749); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/1771ffd926d8156b518aed5f2fb04e] ~> TaskHandler[id: 761; name: POREC:digest_align_annotate (752); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/404ee851d26082277236306a032469] ~> TaskHandler[id: 762; name: POREC:digest_align_annotate (753); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3834073582a35775eeb7540cc10078] ~> TaskHandler[id: 793; name: POREC:digest_align_annotate (784); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/74a074793c9edf4bd134de4bee8912] ~> TaskHandler[id: 763; name: POREC:digest_align_annotate (754); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/e39174e2b1e52e65c7c4708bc503cb] ~> TaskHandler[id: 764; name: POREC:digest_align_annotate (755); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/fcd1fb6cbb515b1ff228dca8a393c5] ~> TaskHandler[id: 765; name: POREC:digest_align_annotate (756); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/580d09c3eb2b9affb01ad25ff2dfb7] ~> TaskHandler[id: 766; name: POREC:digest_align_annotate (757); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/9768be25f9b57e70e6b5414dc7f5a1] ~> TaskHandler[id: 767; name: POREC:digest_align_annotate (758); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/b7ffe2fe80fdd2bdfe75eaf61241d6] .. remaining tasks omitted. Aug-17 19:27:15.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 757; name: POREC:digest_align_annotate (748); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/5a04cfcf5a6e753939e817c29d4dcb] Aug-17 19:27:15.091 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (748)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/5a04cfcf5a6e753939e817c29d4dcb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:27:15.091 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:27:15.096 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:27:15.096 [Task submitter] INFO nextflow.Session - [6d/fba3c2] Submitted process > POREC:digest_align_annotate (750) Aug-17 19:28:41.804 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 759; name: POREC:digest_align_annotate (750); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/fba3c24ac069b03bc387fb6fc2ebd2] Aug-17 19:28:41.805 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (750)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/fba3c24ac069b03bc387fb6fc2ebd2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:28:41.806 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:28:41.830 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:28:41.851 [Task submitter] INFO nextflow.Session - [90/1771ff] Submitted process > POREC:digest_align_annotate (749) Aug-17 19:28:42.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 758; name: POREC:digest_align_annotate (749); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/1771ffd926d8156b518aed5f2fb04e] Aug-17 19:30:22.569 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 758; name: POREC:digest_align_annotate (749); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/1771ffd926d8156b518aed5f2fb04e] Aug-17 19:30:22.570 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (749)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/1771ffd926d8156b518aed5f2fb04e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:30:22.570 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:30:22.576 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:30:22.576 [Task submitter] INFO nextflow.Session - [18/404ee8] Submitted process > POREC:digest_align_annotate (752) Aug-17 19:31:02.712 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 762; name: POREC:digest_align_annotate (753); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3834073582a35775eeb7540cc10078] ~> TaskHandler[id: 793; name: POREC:digest_align_annotate (784); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/74a074793c9edf4bd134de4bee8912] ~> TaskHandler[id: 763; name: POREC:digest_align_annotate (754); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/e39174e2b1e52e65c7c4708bc503cb] ~> TaskHandler[id: 764; name: POREC:digest_align_annotate (755); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/fcd1fb6cbb515b1ff228dca8a393c5] ~> TaskHandler[id: 765; name: POREC:digest_align_annotate (756); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/580d09c3eb2b9affb01ad25ff2dfb7] ~> TaskHandler[id: 766; name: POREC:digest_align_annotate (757); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/9768be25f9b57e70e6b5414dc7f5a1] ~> TaskHandler[id: 767; name: POREC:digest_align_annotate (758); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/b7ffe2fe80fdd2bdfe75eaf61241d6] ~> TaskHandler[id: 768; name: POREC:digest_align_annotate (759); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4ee84aa7d5a47939bd895665d23e73] ~> TaskHandler[id: 769; name: POREC:digest_align_annotate (760); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/607a6e5f9cd09bd2915350ef0e2d7a] ~> TaskHandler[id: 770; name: POREC:digest_align_annotate (761); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/06907c4d942215376c62d78d7c0e26] .. remaining tasks omitted. Aug-17 19:32:06.335 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 761; name: POREC:digest_align_annotate (752); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/404ee851d26082277236306a032469] Aug-17 19:32:06.351 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (752)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/404ee851d26082277236306a032469/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:32:06.352 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:32:06.357 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:32:06.357 [Task submitter] INFO nextflow.Session - [9a/383407] Submitted process > POREC:digest_align_annotate (753) Aug-17 19:33:33.457 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 762; name: POREC:digest_align_annotate (753); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3834073582a35775eeb7540cc10078] Aug-17 19:33:33.457 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (753)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/3834073582a35775eeb7540cc10078/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:33:33.458 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:33:33.463 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:33:33.463 [Task submitter] INFO nextflow.Session - [dd/74a074] Submitted process > POREC:digest_align_annotate (784) Aug-17 19:33:42.670 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 793; name: POREC:digest_align_annotate (784); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/74a074793c9edf4bd134de4bee8912] Aug-17 19:35:00.887 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 793; name: POREC:digest_align_annotate (784); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/74a074793c9edf4bd134de4bee8912] Aug-17 19:35:00.888 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (784)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/74a074793c9edf4bd134de4bee8912/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:35:00.888 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:35:00.893 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:35:00.893 [Task submitter] INFO nextflow.Session - [71/e39174] Submitted process > POREC:digest_align_annotate (754) Aug-17 19:36:03.078 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 764; name: POREC:digest_align_annotate (755); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/fcd1fb6cbb515b1ff228dca8a393c5] ~> TaskHandler[id: 765; name: POREC:digest_align_annotate (756); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/580d09c3eb2b9affb01ad25ff2dfb7] ~> TaskHandler[id: 766; name: POREC:digest_align_annotate (757); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/9768be25f9b57e70e6b5414dc7f5a1] ~> TaskHandler[id: 767; name: POREC:digest_align_annotate (758); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/b7ffe2fe80fdd2bdfe75eaf61241d6] ~> TaskHandler[id: 768; name: POREC:digest_align_annotate (759); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4ee84aa7d5a47939bd895665d23e73] ~> TaskHandler[id: 769; name: POREC:digest_align_annotate (760); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/607a6e5f9cd09bd2915350ef0e2d7a] ~> TaskHandler[id: 770; name: POREC:digest_align_annotate (761); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/06907c4d942215376c62d78d7c0e26] ~> TaskHandler[id: 771; name: POREC:digest_align_annotate (762); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/8e0a56901dc194cd139647b3951fd9] ~> TaskHandler[id: 774; name: POREC:digest_align_annotate (765); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/131f6d67531ad65f5cf5ea81212f27] ~> TaskHandler[id: 775; name: POREC:digest_align_annotate (766); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/13a6c588dd842a88ce4a0d36bb2e9a] .. remaining tasks omitted. Aug-17 19:36:30.440 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 763; name: POREC:digest_align_annotate (754); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/e39174e2b1e52e65c7c4708bc503cb] Aug-17 19:36:30.441 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (754)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/e39174e2b1e52e65c7c4708bc503cb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:36:30.443 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:36:30.449 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:36:30.450 [Task submitter] INFO nextflow.Session - [31/fcd1fb] Submitted process > POREC:digest_align_annotate (755) Aug-17 19:38:00.699 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 764; name: POREC:digest_align_annotate (755); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/fcd1fb6cbb515b1ff228dca8a393c5] Aug-17 19:38:00.700 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (755)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/fcd1fb6cbb515b1ff228dca8a393c5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:38:00.701 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:38:00.708 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:38:00.708 [Task submitter] INFO nextflow.Session - [f0/580d09] Submitted process > POREC:digest_align_annotate (756) Aug-17 19:38:42.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 765; name: POREC:digest_align_annotate (756); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/580d09c3eb2b9affb01ad25ff2dfb7] Aug-17 19:39:29.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 765; name: POREC:digest_align_annotate (756); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/580d09c3eb2b9affb01ad25ff2dfb7] Aug-17 19:39:29.419 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (756)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/580d09c3eb2b9affb01ad25ff2dfb7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:39:29.419 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:39:29.424 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:39:29.424 [Task submitter] INFO nextflow.Session - [62/9768be] Submitted process > POREC:digest_align_annotate (757) Aug-17 19:40:55.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 766; name: POREC:digest_align_annotate (757); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/9768be25f9b57e70e6b5414dc7f5a1] Aug-17 19:40:55.543 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (757)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/9768be25f9b57e70e6b5414dc7f5a1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:40:55.543 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:40:55.548 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:40:55.548 [Task submitter] INFO nextflow.Session - [18/b7ffe2] Submitted process > POREC:digest_align_annotate (758) Aug-17 19:41:03.579 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 768; name: POREC:digest_align_annotate (759); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4ee84aa7d5a47939bd895665d23e73] ~> TaskHandler[id: 769; name: POREC:digest_align_annotate (760); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/607a6e5f9cd09bd2915350ef0e2d7a] ~> TaskHandler[id: 770; name: POREC:digest_align_annotate (761); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/06907c4d942215376c62d78d7c0e26] ~> TaskHandler[id: 771; name: POREC:digest_align_annotate (762); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/8e0a56901dc194cd139647b3951fd9] ~> TaskHandler[id: 774; name: POREC:digest_align_annotate (765); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/131f6d67531ad65f5cf5ea81212f27] ~> TaskHandler[id: 775; name: POREC:digest_align_annotate (766); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/13a6c588dd842a88ce4a0d36bb2e9a] ~> TaskHandler[id: 776; name: POREC:digest_align_annotate (767); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/56bc82d9dbb60057344506651688ae] ~> TaskHandler[id: 772; name: POREC:digest_align_annotate (763); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/e32e2498e15879842e1c05b09d8aea] ~> TaskHandler[id: 773; name: POREC:digest_align_annotate (764); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4e1f9002a397250e0e09964e4b45f2] ~> TaskHandler[id: 777; name: POREC:digest_align_annotate (768); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/45865ac70002488d7f8cea4a29f5c1] .. remaining tasks omitted. Aug-17 19:42:22.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 767; name: POREC:digest_align_annotate (758); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/b7ffe2fe80fdd2bdfe75eaf61241d6] Aug-17 19:42:22.482 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (758)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/b7ffe2fe80fdd2bdfe75eaf61241d6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:42:22.482 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:42:22.490 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:42:22.491 [Task submitter] INFO nextflow.Session - [90/4ee84a] Submitted process > POREC:digest_align_annotate (759) Aug-17 19:43:42.774 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 768; name: POREC:digest_align_annotate (759); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4ee84aa7d5a47939bd895665d23e73] Aug-17 19:44:19.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 768; name: POREC:digest_align_annotate (759); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4ee84aa7d5a47939bd895665d23e73] Aug-17 19:44:19.619 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (759)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/4ee84aa7d5a47939bd895665d23e73/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:44:19.619 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:44:19.671 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:44:19.671 [Task submitter] INFO nextflow.Session - [7b/607a6e] Submitted process > POREC:digest_align_annotate (760) Aug-17 19:45:49.987 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 769; name: POREC:digest_align_annotate (760); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/607a6e5f9cd09bd2915350ef0e2d7a] Aug-17 19:45:49.988 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (760)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/607a6e5f9cd09bd2915350ef0e2d7a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:45:49.988 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:45:50.045 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:45:50.045 [Task submitter] INFO nextflow.Session - [80/06907c] Submitted process > POREC:digest_align_annotate (761) Aug-17 19:46:04.096 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 771; name: POREC:digest_align_annotate (762); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/8e0a56901dc194cd139647b3951fd9] ~> TaskHandler[id: 774; name: POREC:digest_align_annotate (765); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/131f6d67531ad65f5cf5ea81212f27] ~> TaskHandler[id: 775; name: POREC:digest_align_annotate (766); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/13a6c588dd842a88ce4a0d36bb2e9a] ~> TaskHandler[id: 776; name: POREC:digest_align_annotate (767); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/56bc82d9dbb60057344506651688ae] ~> TaskHandler[id: 772; name: POREC:digest_align_annotate (763); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/e32e2498e15879842e1c05b09d8aea] ~> TaskHandler[id: 773; name: POREC:digest_align_annotate (764); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4e1f9002a397250e0e09964e4b45f2] ~> TaskHandler[id: 777; name: POREC:digest_align_annotate (768); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/45865ac70002488d7f8cea4a29f5c1] ~> TaskHandler[id: 778; name: POREC:digest_align_annotate (769); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/7a2001c333ff986025bf4eaaa495da] ~> TaskHandler[id: 780; name: POREC:digest_align_annotate (771); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/0a2939e7988ad4e8d9ff58e0e1949c] ~> TaskHandler[id: 779; name: POREC:digest_align_annotate (770); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/4442b77f6aa488587b2b1f7c3c47a1] .. remaining tasks omitted. Aug-17 19:47:17.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 770; name: POREC:digest_align_annotate (761); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/06907c4d942215376c62d78d7c0e26] Aug-17 19:47:17.473 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (761)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/06907c4d942215376c62d78d7c0e26/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:47:17.474 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:47:17.513 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:47:17.513 [Task submitter] INFO nextflow.Session - [e3/8e0a56] Submitted process > POREC:digest_align_annotate (762) Aug-17 19:48:42.873 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 771; name: POREC:digest_align_annotate (762); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/8e0a56901dc194cd139647b3951fd9] Aug-17 19:48:53.908 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 771; name: POREC:digest_align_annotate (762); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/8e0a56901dc194cd139647b3951fd9] Aug-17 19:48:53.909 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (762)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/8e0a56901dc194cd139647b3951fd9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:48:53.910 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:48:53.920 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:48:53.920 [Task submitter] INFO nextflow.Session - [6b/131f6d] Submitted process > POREC:digest_align_annotate (765) Aug-17 19:50:22.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 774; name: POREC:digest_align_annotate (765); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/131f6d67531ad65f5cf5ea81212f27] Aug-17 19:50:22.068 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (765)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/131f6d67531ad65f5cf5ea81212f27/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:50:22.068 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:50:22.072 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:50:22.072 [Task submitter] INFO nextflow.Session - [50/13a6c5] Submitted process > POREC:digest_align_annotate (766) Aug-17 19:51:04.284 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 776; name: POREC:digest_align_annotate (767); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/56bc82d9dbb60057344506651688ae] ~> TaskHandler[id: 772; name: POREC:digest_align_annotate (763); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/e32e2498e15879842e1c05b09d8aea] ~> TaskHandler[id: 773; name: POREC:digest_align_annotate (764); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4e1f9002a397250e0e09964e4b45f2] ~> TaskHandler[id: 777; name: POREC:digest_align_annotate (768); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/45865ac70002488d7f8cea4a29f5c1] ~> TaskHandler[id: 778; name: POREC:digest_align_annotate (769); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/7a2001c333ff986025bf4eaaa495da] ~> TaskHandler[id: 780; name: POREC:digest_align_annotate (771); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/0a2939e7988ad4e8d9ff58e0e1949c] ~> TaskHandler[id: 779; name: POREC:digest_align_annotate (770); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/4442b77f6aa488587b2b1f7c3c47a1] ~> TaskHandler[id: 781; name: POREC:digest_align_annotate (772); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/1722f03b049ee356bd5f1c0ad212bc] ~> TaskHandler[id: 783; name: POREC:digest_align_annotate (774); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/beeecde671f1425fe87b69cfd2eb5c] ~> TaskHandler[id: 782; name: POREC:digest_align_annotate (773); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cf9c48d45954cf561c747f31dfa370] .. remaining tasks omitted. Aug-17 19:51:57.503 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 775; name: POREC:digest_align_annotate (766); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/13a6c588dd842a88ce4a0d36bb2e9a] Aug-17 19:51:57.504 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (766)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/13a6c588dd842a88ce4a0d36bb2e9a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:51:57.505 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:51:57.539 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:51:57.539 [Task submitter] INFO nextflow.Session - [c7/56bc82] Submitted process > POREC:digest_align_annotate (767) Aug-17 19:53:31.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 776; name: POREC:digest_align_annotate (767); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/56bc82d9dbb60057344506651688ae] Aug-17 19:53:31.820 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (767)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/56bc82d9dbb60057344506651688ae/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:53:31.821 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:53:31.838 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:53:31.838 [Task submitter] INFO nextflow.Session - [cc/e32e24] Submitted process > POREC:digest_align_annotate (763) Aug-17 19:53:42.928 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 772; name: POREC:digest_align_annotate (763); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/e32e2498e15879842e1c05b09d8aea] Aug-17 19:55:04.299 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 772; name: POREC:digest_align_annotate (763); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/e32e2498e15879842e1c05b09d8aea] Aug-17 19:55:04.299 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (763)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/e32e2498e15879842e1c05b09d8aea/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:55:04.300 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:55:04.303 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:55:04.303 [Task submitter] INFO nextflow.Session - [b5/4e1f90] Submitted process > POREC:digest_align_annotate (764) Aug-17 19:56:04.478 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 777; name: POREC:digest_align_annotate (768); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/45865ac70002488d7f8cea4a29f5c1] ~> TaskHandler[id: 778; name: POREC:digest_align_annotate (769); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/7a2001c333ff986025bf4eaaa495da] ~> TaskHandler[id: 780; name: POREC:digest_align_annotate (771); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/0a2939e7988ad4e8d9ff58e0e1949c] ~> TaskHandler[id: 779; name: POREC:digest_align_annotate (770); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/4442b77f6aa488587b2b1f7c3c47a1] ~> TaskHandler[id: 781; name: POREC:digest_align_annotate (772); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/1722f03b049ee356bd5f1c0ad212bc] ~> TaskHandler[id: 783; name: POREC:digest_align_annotate (774); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/beeecde671f1425fe87b69cfd2eb5c] ~> TaskHandler[id: 782; name: POREC:digest_align_annotate (773); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cf9c48d45954cf561c747f31dfa370] ~> TaskHandler[id: 784; name: POREC:digest_align_annotate (775); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/15ce9be16cdf883951bd04eaec7ddd] ~> TaskHandler[id: 816; name: POREC:digest_align_annotate (807); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/e2ca23fbd6b047b69f56f2d99cafe5] ~> TaskHandler[id: 785; name: POREC:digest_align_annotate (776); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/a5e8da5c1d8f56bc7838cc6e8a0d1a] .. remaining tasks omitted. Aug-17 19:56:33.494 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 773; name: POREC:digest_align_annotate (764); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4e1f9002a397250e0e09964e4b45f2] Aug-17 19:56:33.495 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (764)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/4e1f9002a397250e0e09964e4b45f2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:56:33.496 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:56:33.502 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:56:33.502 [Task submitter] INFO nextflow.Session - [d2/45865a] Submitted process > POREC:digest_align_annotate (768) Aug-17 19:58:02.541 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 777; name: POREC:digest_align_annotate (768); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/45865ac70002488d7f8cea4a29f5c1] Aug-17 19:58:02.542 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (768)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/45865ac70002488d7f8cea4a29f5c1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:58:02.542 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:58:02.551 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:58:02.551 [Task submitter] INFO nextflow.Session - [6d/7a2001] Submitted process > POREC:digest_align_annotate (769) Aug-17 19:58:42.999 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 778; name: POREC:digest_align_annotate (769); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/7a2001c333ff986025bf4eaaa495da] Aug-17 19:59:29.556 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 778; name: POREC:digest_align_annotate (769); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/7a2001c333ff986025bf4eaaa495da] Aug-17 19:59:29.557 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (769)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/7a2001c333ff986025bf4eaaa495da/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 19:59:29.557 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 19:59:29.560 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 19:59:29.593 [Task submitter] INFO nextflow.Session - [19/0a2939] Submitted process > POREC:digest_align_annotate (771) Aug-17 20:01:04.876 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 779; name: POREC:digest_align_annotate (770); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/4442b77f6aa488587b2b1f7c3c47a1] ~> TaskHandler[id: 781; name: POREC:digest_align_annotate (772); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/1722f03b049ee356bd5f1c0ad212bc] ~> TaskHandler[id: 783; name: POREC:digest_align_annotate (774); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/beeecde671f1425fe87b69cfd2eb5c] ~> TaskHandler[id: 782; name: POREC:digest_align_annotate (773); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cf9c48d45954cf561c747f31dfa370] ~> TaskHandler[id: 784; name: POREC:digest_align_annotate (775); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/15ce9be16cdf883951bd04eaec7ddd] ~> TaskHandler[id: 816; name: POREC:digest_align_annotate (807); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/e2ca23fbd6b047b69f56f2d99cafe5] ~> TaskHandler[id: 785; name: POREC:digest_align_annotate (776); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/a5e8da5c1d8f56bc7838cc6e8a0d1a] ~> TaskHandler[id: 787; name: POREC:digest_align_annotate (778); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/8e6e27d5f251a782ea06e692d5722a] ~> TaskHandler[id: 788; name: POREC:digest_align_annotate (779); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/12c52ebc26e7707675919b47103a05] ~> TaskHandler[id: 789; name: POREC:digest_align_annotate (780); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ea3a52ff6fdb58efa7f41090a854c8] .. remaining tasks omitted. Aug-17 20:01:12.841 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 780; name: POREC:digest_align_annotate (771); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/0a2939e7988ad4e8d9ff58e0e1949c] Aug-17 20:01:12.841 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (771)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/0a2939e7988ad4e8d9ff58e0e1949c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:01:12.842 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:01:12.857 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:01:12.857 [Task submitter] INFO nextflow.Session - [11/4442b7] Submitted process > POREC:digest_align_annotate (770) Aug-17 20:02:58.130 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 779; name: POREC:digest_align_annotate (770); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/4442b77f6aa488587b2b1f7c3c47a1] Aug-17 20:02:58.130 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (770)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/4442b77f6aa488587b2b1f7c3c47a1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:02:58.134 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:02:58.141 [Task submitter] INFO nextflow.Session - [c5/1722f0] Submitted process > POREC:digest_align_annotate (772) Aug-17 20:02:58.141 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:03:43.088 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 781; name: POREC:digest_align_annotate (772); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/1722f03b049ee356bd5f1c0ad212bc] Aug-17 20:04:37.728 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 781; name: POREC:digest_align_annotate (772); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/1722f03b049ee356bd5f1c0ad212bc] Aug-17 20:04:37.729 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (772)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/1722f03b049ee356bd5f1c0ad212bc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:04:37.730 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:04:37.736 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:04:37.736 [Task submitter] INFO nextflow.Session - [22/beeecd] Submitted process > POREC:digest_align_annotate (774) Aug-17 20:06:05.002 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 782; name: POREC:digest_align_annotate (773); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cf9c48d45954cf561c747f31dfa370] ~> TaskHandler[id: 784; name: POREC:digest_align_annotate (775); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/15ce9be16cdf883951bd04eaec7ddd] ~> TaskHandler[id: 816; name: POREC:digest_align_annotate (807); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/e2ca23fbd6b047b69f56f2d99cafe5] ~> TaskHandler[id: 785; name: POREC:digest_align_annotate (776); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/a5e8da5c1d8f56bc7838cc6e8a0d1a] ~> TaskHandler[id: 787; name: POREC:digest_align_annotate (778); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/8e6e27d5f251a782ea06e692d5722a] ~> TaskHandler[id: 788; name: POREC:digest_align_annotate (779); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/12c52ebc26e7707675919b47103a05] ~> TaskHandler[id: 789; name: POREC:digest_align_annotate (780); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ea3a52ff6fdb58efa7f41090a854c8] ~> TaskHandler[id: 790; name: POREC:digest_align_annotate (781); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/ca87a36c9a475bf1054f7751386a76] ~> TaskHandler[id: 791; name: POREC:digest_align_annotate (782); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/00c5f9bd47b2bddcde75b7df764d39] ~> TaskHandler[id: 792; name: POREC:digest_align_annotate (783); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/7ecd452a865d1507bca71597c8db64] .. remaining tasks omitted. Aug-17 20:06:16.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 783; name: POREC:digest_align_annotate (774); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/beeecde671f1425fe87b69cfd2eb5c] Aug-17 20:06:16.458 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (774)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/beeecde671f1425fe87b69cfd2eb5c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:06:16.459 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:06:16.464 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:06:16.464 [Task submitter] INFO nextflow.Session - [9c/cf9c48] Submitted process > POREC:digest_align_annotate (773) Aug-17 20:07:47.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 782; name: POREC:digest_align_annotate (773); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cf9c48d45954cf561c747f31dfa370] Aug-17 20:07:47.748 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (773)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cf9c48d45954cf561c747f31dfa370/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:07:47.749 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:07:47.754 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:07:47.754 [Task submitter] INFO nextflow.Session - [b1/15ce9b] Submitted process > POREC:digest_align_annotate (775) Aug-17 20:08:43.132 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 784; name: POREC:digest_align_annotate (775); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/15ce9be16cdf883951bd04eaec7ddd] Aug-17 20:09:20.391 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 784; name: POREC:digest_align_annotate (775); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/15ce9be16cdf883951bd04eaec7ddd] Aug-17 20:09:20.392 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (775)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/15ce9be16cdf883951bd04eaec7ddd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:09:20.393 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:09:20.398 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:09:20.398 [Task submitter] INFO nextflow.Session - [ac/e2ca23] Submitted process > POREC:digest_align_annotate (807) Aug-17 20:10:56.174 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 816; name: POREC:digest_align_annotate (807); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/e2ca23fbd6b047b69f56f2d99cafe5] Aug-17 20:10:56.175 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (807)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/e2ca23fbd6b047b69f56f2d99cafe5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:10:56.181 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:10:56.203 [Task submitter] INFO nextflow.Session - [45/a5e8da] Submitted process > POREC:digest_align_annotate (776) Aug-17 20:10:56.203 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:11:05.239 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 787; name: POREC:digest_align_annotate (778); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/8e6e27d5f251a782ea06e692d5722a] ~> TaskHandler[id: 788; name: POREC:digest_align_annotate (779); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/12c52ebc26e7707675919b47103a05] ~> TaskHandler[id: 789; name: POREC:digest_align_annotate (780); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ea3a52ff6fdb58efa7f41090a854c8] ~> TaskHandler[id: 790; name: POREC:digest_align_annotate (781); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/ca87a36c9a475bf1054f7751386a76] ~> TaskHandler[id: 791; name: POREC:digest_align_annotate (782); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/00c5f9bd47b2bddcde75b7df764d39] ~> TaskHandler[id: 792; name: POREC:digest_align_annotate (783); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/7ecd452a865d1507bca71597c8db64] ~> TaskHandler[id: 824; name: POREC:digest_align_annotate (815); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/9b85d9a6b2b2e4b649dfd9be686458] ~> TaskHandler[id: 825; name: POREC:digest_align_annotate (816); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/b5c79f9deb0119cd0506d79fccedb3] ~> TaskHandler[id: 794; name: POREC:digest_align_annotate (785); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/6c01a32886922843616215a4d7edd6] ~> TaskHandler[id: 796; name: POREC:digest_align_annotate (787); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/856c2c3f909d0437e097a6eb5fa4f9] .. remaining tasks omitted. Aug-17 20:12:43.099 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 785; name: POREC:digest_align_annotate (776); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/a5e8da5c1d8f56bc7838cc6e8a0d1a] Aug-17 20:12:43.100 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (776)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/a5e8da5c1d8f56bc7838cc6e8a0d1a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:12:43.100 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:12:43.104 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:12:43.104 [Task submitter] INFO nextflow.Session - [8f/8e6e27] Submitted process > POREC:digest_align_annotate (778) Aug-17 20:13:43.185 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 787; name: POREC:digest_align_annotate (778); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/8e6e27d5f251a782ea06e692d5722a] Aug-17 20:14:12.205 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 787; name: POREC:digest_align_annotate (778); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/8e6e27d5f251a782ea06e692d5722a] Aug-17 20:14:12.205 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (778)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/8e6e27d5f251a782ea06e692d5722a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:14:12.206 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:14:12.210 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:14:12.210 [Task submitter] INFO nextflow.Session - [da/12c52e] Submitted process > POREC:digest_align_annotate (779) Aug-17 20:15:41.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 788; name: POREC:digest_align_annotate (779); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/12c52ebc26e7707675919b47103a05] Aug-17 20:15:41.701 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (779)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/12c52ebc26e7707675919b47103a05/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:15:41.702 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:15:41.707 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:15:41.707 [Task submitter] INFO nextflow.Session - [d6/ea3a52] Submitted process > POREC:digest_align_annotate (780) Aug-17 20:16:05.788 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 790; name: POREC:digest_align_annotate (781); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/ca87a36c9a475bf1054f7751386a76] ~> TaskHandler[id: 791; name: POREC:digest_align_annotate (782); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/00c5f9bd47b2bddcde75b7df764d39] ~> TaskHandler[id: 792; name: POREC:digest_align_annotate (783); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/7ecd452a865d1507bca71597c8db64] ~> TaskHandler[id: 824; name: POREC:digest_align_annotate (815); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/9b85d9a6b2b2e4b649dfd9be686458] ~> TaskHandler[id: 825; name: POREC:digest_align_annotate (816); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/b5c79f9deb0119cd0506d79fccedb3] ~> TaskHandler[id: 794; name: POREC:digest_align_annotate (785); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/6c01a32886922843616215a4d7edd6] ~> TaskHandler[id: 796; name: POREC:digest_align_annotate (787); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/856c2c3f909d0437e097a6eb5fa4f9] ~> TaskHandler[id: 795; name: POREC:digest_align_annotate (786); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/050a29ef601c679bd4e1ec230be00b] ~> TaskHandler[id: 797; name: POREC:digest_align_annotate (788); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/36fbe9c1efd26febbcf31a721d135b] ~> TaskHandler[id: 799; name: POREC:digest_align_annotate (790); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/db9b100e84f903152b880c9437db27] .. remaining tasks omitted. Aug-17 20:17:15.874 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 789; name: POREC:digest_align_annotate (780); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ea3a52ff6fdb58efa7f41090a854c8] Aug-17 20:17:15.874 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (780)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ea3a52ff6fdb58efa7f41090a854c8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:17:15.875 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:17:15.880 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:17:15.880 [Task submitter] INFO nextflow.Session - [f0/ca87a3] Submitted process > POREC:digest_align_annotate (781) Aug-17 20:18:43.284 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 790; name: POREC:digest_align_annotate (781); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/ca87a36c9a475bf1054f7751386a76] Aug-17 20:18:46.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 790; name: POREC:digest_align_annotate (781); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/ca87a36c9a475bf1054f7751386a76] Aug-17 20:18:46.464 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (781)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/ca87a36c9a475bf1054f7751386a76/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:18:46.465 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:18:46.469 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:18:46.469 [Task submitter] INFO nextflow.Session - [98/00c5f9] Submitted process > POREC:digest_align_annotate (782) Aug-17 20:20:12.577 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 791; name: POREC:digest_align_annotate (782); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/00c5f9bd47b2bddcde75b7df764d39] Aug-17 20:20:12.578 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (782)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/00c5f9bd47b2bddcde75b7df764d39/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:20:12.578 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:20:12.583 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:20:12.583 [Task submitter] INFO nextflow.Session - [80/7ecd45] Submitted process > POREC:digest_align_annotate (783) Aug-17 20:21:06.743 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 824; name: POREC:digest_align_annotate (815); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/9b85d9a6b2b2e4b649dfd9be686458] ~> TaskHandler[id: 825; name: POREC:digest_align_annotate (816); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/b5c79f9deb0119cd0506d79fccedb3] ~> TaskHandler[id: 794; name: POREC:digest_align_annotate (785); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/6c01a32886922843616215a4d7edd6] ~> TaskHandler[id: 796; name: POREC:digest_align_annotate (787); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/856c2c3f909d0437e097a6eb5fa4f9] ~> TaskHandler[id: 795; name: POREC:digest_align_annotate (786); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/050a29ef601c679bd4e1ec230be00b] ~> TaskHandler[id: 797; name: POREC:digest_align_annotate (788); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/36fbe9c1efd26febbcf31a721d135b] ~> TaskHandler[id: 799; name: POREC:digest_align_annotate (790); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/db9b100e84f903152b880c9437db27] ~> TaskHandler[id: 798; name: POREC:digest_align_annotate (789); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/8c74c239f1c5a249b9574c6784f876] ~> TaskHandler[id: 800; name: POREC:digest_align_annotate (791); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/e148954053e76a51b85921acd619f8] ~> TaskHandler[id: 801; name: POREC:digest_align_annotate (792); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c51652588815cf4a142c2d733afa6a] .. remaining tasks omitted. Aug-17 20:21:40.663 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 792; name: POREC:digest_align_annotate (783); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/7ecd452a865d1507bca71597c8db64] Aug-17 20:21:40.663 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (783)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/7ecd452a865d1507bca71597c8db64/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:21:40.664 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:21:40.668 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:21:40.669 [Task submitter] INFO nextflow.Session - [9a/9b85d9] Submitted process > POREC:digest_align_annotate (815) Aug-17 20:23:09.984 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 824; name: POREC:digest_align_annotate (815); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/9b85d9a6b2b2e4b649dfd9be686458] Aug-17 20:23:09.984 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (815)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/9b85d9a6b2b2e4b649dfd9be686458/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:23:09.985 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:23:09.990 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:23:09.990 [Task submitter] INFO nextflow.Session - [09/b5c79f] Submitted process > POREC:digest_align_annotate (816) Aug-17 20:23:43.321 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 825; name: POREC:digest_align_annotate (816); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/b5c79f9deb0119cd0506d79fccedb3] Aug-17 20:24:33.947 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 825; name: POREC:digest_align_annotate (816); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/b5c79f9deb0119cd0506d79fccedb3] Aug-17 20:24:33.948 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (816)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/b5c79f9deb0119cd0506d79fccedb3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:24:33.949 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:24:34.007 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:24:34.007 [Task submitter] INFO nextflow.Session - [61/6c01a3] Submitted process > POREC:digest_align_annotate (785) Aug-17 20:25:59.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 794; name: POREC:digest_align_annotate (785); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/6c01a32886922843616215a4d7edd6] Aug-17 20:25:59.993 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (785)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/6c01a32886922843616215a4d7edd6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:25:59.994 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:26:00.014 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:26:00.014 [Task submitter] INFO nextflow.Session - [ac/856c2c] Submitted process > POREC:digest_align_annotate (787) Aug-17 20:26:07.042 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 795; name: POREC:digest_align_annotate (786); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/050a29ef601c679bd4e1ec230be00b] ~> TaskHandler[id: 797; name: POREC:digest_align_annotate (788); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/36fbe9c1efd26febbcf31a721d135b] ~> TaskHandler[id: 799; name: POREC:digest_align_annotate (790); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/db9b100e84f903152b880c9437db27] ~> TaskHandler[id: 798; name: POREC:digest_align_annotate (789); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/8c74c239f1c5a249b9574c6784f876] ~> TaskHandler[id: 800; name: POREC:digest_align_annotate (791); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/e148954053e76a51b85921acd619f8] ~> TaskHandler[id: 801; name: POREC:digest_align_annotate (792); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c51652588815cf4a142c2d733afa6a] ~> TaskHandler[id: 802; name: POREC:digest_align_annotate (793); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/bb0b6de34336709e21c5ae16d4a403] ~> TaskHandler[id: 803; name: POREC:digest_align_annotate (794); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/827b06edeb58d0fe332babe32f80d9] ~> TaskHandler[id: 804; name: POREC:digest_align_annotate (795); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bcb98fb1e18b6a7c8e3f3871f53c6b] ~> TaskHandler[id: 837; name: POREC:digest_align_annotate (828); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6858af973d640dc9981fd15c322cad] .. remaining tasks omitted. Aug-17 20:27:27.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 796; name: POREC:digest_align_annotate (787); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/856c2c3f909d0437e097a6eb5fa4f9] Aug-17 20:27:27.337 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (787)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/856c2c3f909d0437e097a6eb5fa4f9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:27:27.340 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:27:27.340 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:27:27.340 [Task submitter] INFO nextflow.Session - [82/050a29] Submitted process > POREC:digest_align_annotate (786) Aug-17 20:28:43.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 795; name: POREC:digest_align_annotate (786); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/050a29ef601c679bd4e1ec230be00b] Aug-17 20:28:56.892 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 795; name: POREC:digest_align_annotate (786); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/050a29ef601c679bd4e1ec230be00b] Aug-17 20:28:56.893 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (786)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/050a29ef601c679bd4e1ec230be00b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:28:56.894 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:28:56.899 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:28:56.899 [Task submitter] INFO nextflow.Session - [68/36fbe9] Submitted process > POREC:digest_align_annotate (788) Aug-17 20:30:26.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 797; name: POREC:digest_align_annotate (788); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/36fbe9c1efd26febbcf31a721d135b] Aug-17 20:30:26.577 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (788)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/36fbe9c1efd26febbcf31a721d135b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:30:26.578 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:30:26.582 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:30:26.607 [Task submitter] INFO nextflow.Session - [13/db9b10] Submitted process > POREC:digest_align_annotate (790) Aug-17 20:31:07.737 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 798; name: POREC:digest_align_annotate (789); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/8c74c239f1c5a249b9574c6784f876] ~> TaskHandler[id: 800; name: POREC:digest_align_annotate (791); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/e148954053e76a51b85921acd619f8] ~> TaskHandler[id: 801; name: POREC:digest_align_annotate (792); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c51652588815cf4a142c2d733afa6a] ~> TaskHandler[id: 802; name: POREC:digest_align_annotate (793); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/bb0b6de34336709e21c5ae16d4a403] ~> TaskHandler[id: 803; name: POREC:digest_align_annotate (794); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/827b06edeb58d0fe332babe32f80d9] ~> TaskHandler[id: 804; name: POREC:digest_align_annotate (795); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bcb98fb1e18b6a7c8e3f3871f53c6b] ~> TaskHandler[id: 837; name: POREC:digest_align_annotate (828); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6858af973d640dc9981fd15c322cad] ~> TaskHandler[id: 805; name: POREC:digest_align_annotate (796); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1a2e08b48a7209b0a3702a228ac71f] ~> TaskHandler[id: 806; name: POREC:digest_align_annotate (797); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/285939520ac8ead7d7b29ed9ac5dfd] ~> TaskHandler[id: 807; name: POREC:digest_align_annotate (798); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/fde8ee1cde93413974bad752a6ca93] .. remaining tasks omitted. Aug-17 20:31:54.473 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 799; name: POREC:digest_align_annotate (790); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/db9b100e84f903152b880c9437db27] Aug-17 20:31:54.473 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (790)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/db9b100e84f903152b880c9437db27/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:31:54.474 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:31:54.479 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:31:54.479 [Task submitter] INFO nextflow.Session - [de/8c74c2] Submitted process > POREC:digest_align_annotate (789) Aug-17 20:33:23.384 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 798; name: POREC:digest_align_annotate (789); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/8c74c239f1c5a249b9574c6784f876] Aug-17 20:33:23.385 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (789)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/8c74c239f1c5a249b9574c6784f876/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:33:23.386 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:33:23.389 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:33:23.411 [Task submitter] INFO nextflow.Session - [a2/e14895] Submitted process > POREC:digest_align_annotate (791) Aug-17 20:33:43.409 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 800; name: POREC:digest_align_annotate (791); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/e148954053e76a51b85921acd619f8] Aug-17 20:34:45.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 800; name: POREC:digest_align_annotate (791); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/e148954053e76a51b85921acd619f8] Aug-17 20:34:45.718 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (791)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/e148954053e76a51b85921acd619f8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:34:45.718 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:34:45.724 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:34:45.724 [Task submitter] INFO nextflow.Session - [c9/c51652] Submitted process > POREC:digest_align_annotate (792) Aug-17 20:36:07.980 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 802; name: POREC:digest_align_annotate (793); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/bb0b6de34336709e21c5ae16d4a403] ~> TaskHandler[id: 803; name: POREC:digest_align_annotate (794); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/827b06edeb58d0fe332babe32f80d9] ~> TaskHandler[id: 804; name: POREC:digest_align_annotate (795); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bcb98fb1e18b6a7c8e3f3871f53c6b] ~> TaskHandler[id: 837; name: POREC:digest_align_annotate (828); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6858af973d640dc9981fd15c322cad] ~> TaskHandler[id: 805; name: POREC:digest_align_annotate (796); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1a2e08b48a7209b0a3702a228ac71f] ~> TaskHandler[id: 806; name: POREC:digest_align_annotate (797); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/285939520ac8ead7d7b29ed9ac5dfd] ~> TaskHandler[id: 807; name: POREC:digest_align_annotate (798); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/fde8ee1cde93413974bad752a6ca93] ~> TaskHandler[id: 841; name: POREC:digest_align_annotate (832); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0a1a5e45f4d0346bfb9a40de90281c] ~> TaskHandler[id: 842; name: POREC:digest_align_annotate (833); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1643e476c11c5f1977a26987f1d22e] ~> TaskHandler[id: 808; name: POREC:digest_align_annotate (799); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/962139ae447b72042dc55387e7f8a2] .. remaining tasks omitted. Aug-17 20:36:10.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 801; name: POREC:digest_align_annotate (792); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c51652588815cf4a142c2d733afa6a] Aug-17 20:36:11.000 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (792)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/c51652588815cf4a142c2d733afa6a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:36:11.001 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:36:11.004 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:36:11.004 [Task submitter] INFO nextflow.Session - [07/bb0b6d] Submitted process > POREC:digest_align_annotate (793) Aug-17 20:37:38.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 802; name: POREC:digest_align_annotate (793); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/bb0b6de34336709e21c5ae16d4a403] Aug-17 20:37:38.044 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (793)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/bb0b6de34336709e21c5ae16d4a403/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:37:38.045 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:37:38.048 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:37:38.048 [Task submitter] INFO nextflow.Session - [52/827b06] Submitted process > POREC:digest_align_annotate (794) Aug-17 20:38:43.428 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 803; name: POREC:digest_align_annotate (794); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/827b06edeb58d0fe332babe32f80d9] Aug-17 20:39:13.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 803; name: POREC:digest_align_annotate (794); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/827b06edeb58d0fe332babe32f80d9] Aug-17 20:39:13.851 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (794)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/827b06edeb58d0fe332babe32f80d9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:39:13.852 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:39:13.883 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:39:13.883 [Task submitter] INFO nextflow.Session - [26/bcb98f] Submitted process > POREC:digest_align_annotate (795) Aug-17 20:40:49.114 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 804; name: POREC:digest_align_annotate (795); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bcb98fb1e18b6a7c8e3f3871f53c6b] Aug-17 20:40:49.115 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (795)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bcb98fb1e18b6a7c8e3f3871f53c6b/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:40:49.116 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:40:49.120 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:40:49.136 [Task submitter] INFO nextflow.Session - [3a/6858af] Submitted process > POREC:digest_align_annotate (828) Aug-17 20:41:08.202 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 805; name: POREC:digest_align_annotate (796); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1a2e08b48a7209b0a3702a228ac71f] ~> TaskHandler[id: 806; name: POREC:digest_align_annotate (797); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/285939520ac8ead7d7b29ed9ac5dfd] ~> TaskHandler[id: 807; name: POREC:digest_align_annotate (798); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/fde8ee1cde93413974bad752a6ca93] ~> TaskHandler[id: 841; name: POREC:digest_align_annotate (832); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0a1a5e45f4d0346bfb9a40de90281c] ~> TaskHandler[id: 842; name: POREC:digest_align_annotate (833); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1643e476c11c5f1977a26987f1d22e] ~> TaskHandler[id: 808; name: POREC:digest_align_annotate (799); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/962139ae447b72042dc55387e7f8a2] ~> TaskHandler[id: 809; name: POREC:digest_align_annotate (800); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/46fb1845bc09989ccbfab3a229efbd] ~> TaskHandler[id: 810; name: POREC:digest_align_annotate (801); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/b553ded244310f9b321fe6f467cdc8] ~> TaskHandler[id: 811; name: POREC:digest_align_annotate (802); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/34f2413a427337bf9b0f64e9811e0f] ~> TaskHandler[id: 812; name: POREC:digest_align_annotate (803); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/4d86b2416e6fe9749f25f96b6bdced] .. remaining tasks omitted. Aug-17 20:42:25.674 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 837; name: POREC:digest_align_annotate (828); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6858af973d640dc9981fd15c322cad] Aug-17 20:42:25.674 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (828)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6858af973d640dc9981fd15c322cad/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:42:25.675 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:42:25.680 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:42:25.680 [Task submitter] INFO nextflow.Session - [b7/1a2e08] Submitted process > POREC:digest_align_annotate (796) Aug-17 20:43:43.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 805; name: POREC:digest_align_annotate (796); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1a2e08b48a7209b0a3702a228ac71f] Aug-17 20:43:50.737 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 805; name: POREC:digest_align_annotate (796); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1a2e08b48a7209b0a3702a228ac71f] Aug-17 20:43:50.765 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (796)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1a2e08b48a7209b0a3702a228ac71f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:43:50.766 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:43:50.771 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:43:50.771 [Task submitter] INFO nextflow.Session - [1e/285939] Submitted process > POREC:digest_align_annotate (797) Aug-17 20:45:28.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 806; name: POREC:digest_align_annotate (797); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/285939520ac8ead7d7b29ed9ac5dfd] Aug-17 20:45:28.338 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (797)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/285939520ac8ead7d7b29ed9ac5dfd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:45:28.339 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:45:28.344 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:45:28.344 [Task submitter] INFO nextflow.Session - [a0/fde8ee] Submitted process > POREC:digest_align_annotate (798) Aug-17 20:46:08.476 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 841; name: POREC:digest_align_annotate (832); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0a1a5e45f4d0346bfb9a40de90281c] ~> TaskHandler[id: 842; name: POREC:digest_align_annotate (833); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1643e476c11c5f1977a26987f1d22e] ~> TaskHandler[id: 808; name: POREC:digest_align_annotate (799); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/962139ae447b72042dc55387e7f8a2] ~> TaskHandler[id: 809; name: POREC:digest_align_annotate (800); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/46fb1845bc09989ccbfab3a229efbd] ~> TaskHandler[id: 810; name: POREC:digest_align_annotate (801); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/b553ded244310f9b321fe6f467cdc8] ~> TaskHandler[id: 811; name: POREC:digest_align_annotate (802); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/34f2413a427337bf9b0f64e9811e0f] ~> TaskHandler[id: 812; name: POREC:digest_align_annotate (803); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/4d86b2416e6fe9749f25f96b6bdced] ~> TaskHandler[id: 813; name: POREC:digest_align_annotate (804); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/d12411f04046dbef776913575f0f77] ~> TaskHandler[id: 814; name: POREC:digest_align_annotate (805); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/320a5ddb0378019d75332d1fe1fddf] ~> TaskHandler[id: 815; name: POREC:digest_align_annotate (806); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2ebf165116ed59beb77c236800c5f2] .. remaining tasks omitted. Aug-17 20:47:02.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 807; name: POREC:digest_align_annotate (798); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/fde8ee1cde93413974bad752a6ca93] Aug-17 20:47:02.978 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (798)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/fde8ee1cde93413974bad752a6ca93/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:47:02.979 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:47:02.986 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:47:02.986 [Task submitter] INFO nextflow.Session - [bd/0a1a5e] Submitted process > POREC:digest_align_annotate (832) Aug-17 20:48:33.989 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 841; name: POREC:digest_align_annotate (832); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0a1a5e45f4d0346bfb9a40de90281c] Aug-17 20:48:33.990 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (832)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/0a1a5e45f4d0346bfb9a40de90281c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:48:33.991 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:48:33.994 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:48:33.995 [Task submitter] INFO nextflow.Session - [4d/1643e4] Submitted process > POREC:digest_align_annotate (833) Aug-17 20:48:43.504 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 842; name: POREC:digest_align_annotate (833); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1643e476c11c5f1977a26987f1d22e] Aug-17 20:50:05.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 842; name: POREC:digest_align_annotate (833); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1643e476c11c5f1977a26987f1d22e] Aug-17 20:50:05.641 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (833)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/1643e476c11c5f1977a26987f1d22e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:50:05.642 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:50:05.647 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:50:05.647 [Task submitter] INFO nextflow.Session - [c8/962139] Submitted process > POREC:digest_align_annotate (799) Aug-17 20:51:08.844 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 809; name: POREC:digest_align_annotate (800); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/46fb1845bc09989ccbfab3a229efbd] ~> TaskHandler[id: 810; name: POREC:digest_align_annotate (801); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/b553ded244310f9b321fe6f467cdc8] ~> TaskHandler[id: 811; name: POREC:digest_align_annotate (802); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/34f2413a427337bf9b0f64e9811e0f] ~> TaskHandler[id: 812; name: POREC:digest_align_annotate (803); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/4d86b2416e6fe9749f25f96b6bdced] ~> TaskHandler[id: 813; name: POREC:digest_align_annotate (804); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/d12411f04046dbef776913575f0f77] ~> TaskHandler[id: 814; name: POREC:digest_align_annotate (805); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/320a5ddb0378019d75332d1fe1fddf] ~> TaskHandler[id: 815; name: POREC:digest_align_annotate (806); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2ebf165116ed59beb77c236800c5f2] ~> TaskHandler[id: 851; name: POREC:digest_align_annotate (842); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/939fc8d6e87fff52789be309d75c96] ~> TaskHandler[id: 817; name: POREC:digest_align_annotate (808); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/daafc95df864d095ac29756082c5f5] ~> TaskHandler[id: 818; name: POREC:digest_align_annotate (809); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80be94f766588f68a0347104a19ca9] .. remaining tasks omitted. Aug-17 20:51:44.826 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 808; name: POREC:digest_align_annotate (799); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/962139ae447b72042dc55387e7f8a2] Aug-17 20:51:44.827 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (799)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/962139ae447b72042dc55387e7f8a2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:51:44.827 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:51:44.834 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:51:44.835 [Task submitter] INFO nextflow.Session - [10/46fb18] Submitted process > POREC:digest_align_annotate (800) Aug-17 20:53:22.985 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 809; name: POREC:digest_align_annotate (800); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/46fb1845bc09989ccbfab3a229efbd] Aug-17 20:53:22.986 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (800)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/46fb1845bc09989ccbfab3a229efbd/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:53:22.986 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:53:22.991 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:53:22.991 [Task submitter] INFO nextflow.Session - [b8/b553de] Submitted process > POREC:digest_align_annotate (801) Aug-17 20:53:43.511 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 810; name: POREC:digest_align_annotate (801); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/b553ded244310f9b321fe6f467cdc8] Aug-17 20:55:02.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 810; name: POREC:digest_align_annotate (801); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/b553ded244310f9b321fe6f467cdc8] Aug-17 20:55:02.817 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (801)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/b553ded244310f9b321fe6f467cdc8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:55:02.818 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:55:02.823 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:55:02.823 [Task submitter] INFO nextflow.Session - [a9/34f241] Submitted process > POREC:digest_align_annotate (802) Aug-17 20:56:09.030 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 812; name: POREC:digest_align_annotate (803); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/4d86b2416e6fe9749f25f96b6bdced] ~> TaskHandler[id: 813; name: POREC:digest_align_annotate (804); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/d12411f04046dbef776913575f0f77] ~> TaskHandler[id: 814; name: POREC:digest_align_annotate (805); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/320a5ddb0378019d75332d1fe1fddf] ~> TaskHandler[id: 815; name: POREC:digest_align_annotate (806); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2ebf165116ed59beb77c236800c5f2] ~> TaskHandler[id: 851; name: POREC:digest_align_annotate (842); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/939fc8d6e87fff52789be309d75c96] ~> TaskHandler[id: 817; name: POREC:digest_align_annotate (808); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/daafc95df864d095ac29756082c5f5] ~> TaskHandler[id: 818; name: POREC:digest_align_annotate (809); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80be94f766588f68a0347104a19ca9] ~> TaskHandler[id: 819; name: POREC:digest_align_annotate (810); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/987ae48907a8719bf3c4d70bc05715] ~> TaskHandler[id: 820; name: POREC:digest_align_annotate (811); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/134aded0678dd516bde28ed09b09eb] ~> TaskHandler[id: 821; name: POREC:digest_align_annotate (812); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9f6e433faa3a8fb752766a508e4326] .. remaining tasks omitted. Aug-17 20:56:38.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 811; name: POREC:digest_align_annotate (802); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/34f2413a427337bf9b0f64e9811e0f] Aug-17 20:56:38.506 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (802)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/34f2413a427337bf9b0f64e9811e0f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:56:38.508 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:56:38.517 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:56:38.517 [Task submitter] INFO nextflow.Session - [59/4d86b2] Submitted process > POREC:digest_align_annotate (803) Aug-17 20:58:03.593 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 812; name: POREC:digest_align_annotate (803); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/4d86b2416e6fe9749f25f96b6bdced] Aug-17 20:58:03.594 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (803)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/4d86b2416e6fe9749f25f96b6bdced/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:58:03.594 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:58:03.606 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:58:03.606 [Task submitter] INFO nextflow.Session - [bc/d12411] Submitted process > POREC:digest_align_annotate (804) Aug-17 20:58:43.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 813; name: POREC:digest_align_annotate (804); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/d12411f04046dbef776913575f0f77] Aug-17 20:59:27.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 813; name: POREC:digest_align_annotate (804); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/d12411f04046dbef776913575f0f77] Aug-17 20:59:27.165 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (804)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/d12411f04046dbef776913575f0f77/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 20:59:27.165 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 20:59:27.171 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 20:59:27.171 [Task submitter] INFO nextflow.Session - [17/320a5d] Submitted process > POREC:digest_align_annotate (805) Aug-17 21:00:47.476 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 814; name: POREC:digest_align_annotate (805); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/320a5ddb0378019d75332d1fe1fddf] Aug-17 21:00:47.476 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (805)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/320a5ddb0378019d75332d1fe1fddf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:00:47.477 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:00:47.480 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:00:47.480 [Task submitter] INFO nextflow.Session - [78/2ebf16] Submitted process > POREC:digest_align_annotate (806) Aug-17 21:01:09.554 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 851; name: POREC:digest_align_annotate (842); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/939fc8d6e87fff52789be309d75c96] ~> TaskHandler[id: 817; name: POREC:digest_align_annotate (808); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/daafc95df864d095ac29756082c5f5] ~> TaskHandler[id: 818; name: POREC:digest_align_annotate (809); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80be94f766588f68a0347104a19ca9] ~> TaskHandler[id: 819; name: POREC:digest_align_annotate (810); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/987ae48907a8719bf3c4d70bc05715] ~> TaskHandler[id: 820; name: POREC:digest_align_annotate (811); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/134aded0678dd516bde28ed09b09eb] ~> TaskHandler[id: 821; name: POREC:digest_align_annotate (812); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9f6e433faa3a8fb752766a508e4326] ~> TaskHandler[id: 822; name: POREC:digest_align_annotate (813); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/fde15707d676dae2f6d40cbc33487c] ~> TaskHandler[id: 823; name: POREC:digest_align_annotate (814); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/73b8dce39a593f1a68a368f9a8e9be] ~> TaskHandler[id: 826; name: POREC:digest_align_annotate (817); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/b6cac96d4f39ba3b7cac042947b5d9] ~> TaskHandler[id: 827; name: POREC:digest_align_annotate (818); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/606231525507264d314f11b732c9ef] .. remaining tasks omitted. Aug-17 21:02:03.746 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 815; name: POREC:digest_align_annotate (806); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2ebf165116ed59beb77c236800c5f2] Aug-17 21:02:03.747 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (806)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2ebf165116ed59beb77c236800c5f2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:02:03.747 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:02:03.752 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:02:03.752 [Task submitter] INFO nextflow.Session - [d0/939fc8] Submitted process > POREC:digest_align_annotate (842) Aug-17 21:03:25.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 851; name: POREC:digest_align_annotate (842); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/939fc8d6e87fff52789be309d75c96] Aug-17 21:03:25.907 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (842)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/939fc8d6e87fff52789be309d75c96/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:03:25.908 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:03:25.912 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:03:25.934 [Task submitter] INFO nextflow.Session - [df/daafc9] Submitted process > POREC:digest_align_annotate (808) Aug-17 21:03:43.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 817; name: POREC:digest_align_annotate (808); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/daafc95df864d095ac29756082c5f5] Aug-17 21:04:40.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 817; name: POREC:digest_align_annotate (808); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/daafc95df864d095ac29756082c5f5] Aug-17 21:04:40.055 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (808)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/daafc95df864d095ac29756082c5f5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:04:40.056 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:04:40.060 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:04:40.060 [Task submitter] INFO nextflow.Session - [91/80be94] Submitted process > POREC:digest_align_annotate (809) Aug-17 21:06:05.973 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 818; name: POREC:digest_align_annotate (809); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80be94f766588f68a0347104a19ca9] Aug-17 21:06:05.974 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (809)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/80be94f766588f68a0347104a19ca9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:06:05.975 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:06:05.978 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:06:05.978 [Task submitter] INFO nextflow.Session - [5e/987ae4] Submitted process > POREC:digest_align_annotate (810) Aug-17 21:06:09.992 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 820; name: POREC:digest_align_annotate (811); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/134aded0678dd516bde28ed09b09eb] ~> TaskHandler[id: 821; name: POREC:digest_align_annotate (812); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9f6e433faa3a8fb752766a508e4326] ~> TaskHandler[id: 822; name: POREC:digest_align_annotate (813); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/fde15707d676dae2f6d40cbc33487c] ~> TaskHandler[id: 823; name: POREC:digest_align_annotate (814); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/73b8dce39a593f1a68a368f9a8e9be] ~> TaskHandler[id: 826; name: POREC:digest_align_annotate (817); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/b6cac96d4f39ba3b7cac042947b5d9] ~> TaskHandler[id: 827; name: POREC:digest_align_annotate (818); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/606231525507264d314f11b732c9ef] ~> TaskHandler[id: 828; name: POREC:digest_align_annotate (819); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/8680b348fbcb451b488d39f7fb25f9] ~> TaskHandler[id: 829; name: POREC:digest_align_annotate (820); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b5c8bfe4817ae36ab31a01de13e2cf] ~> TaskHandler[id: 830; name: POREC:digest_align_annotate (821); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/5d95d18e439c94671010b621a87241] ~> TaskHandler[id: 831; name: POREC:digest_align_annotate (822); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/96b4d91eec7de2ef0f4a5a189dbefb] .. remaining tasks omitted. Aug-17 21:07:40.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 819; name: POREC:digest_align_annotate (810); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/987ae48907a8719bf3c4d70bc05715] Aug-17 21:07:40.632 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (810)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/987ae48907a8719bf3c4d70bc05715/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:07:40.633 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:07:40.637 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:07:40.701 [Task submitter] INFO nextflow.Session - [fb/134ade] Submitted process > POREC:digest_align_annotate (811) Aug-17 21:08:43.703 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 820; name: POREC:digest_align_annotate (811); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/134aded0678dd516bde28ed09b09eb] Aug-17 21:08:57.908 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 820; name: POREC:digest_align_annotate (811); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/134aded0678dd516bde28ed09b09eb] Aug-17 21:08:57.909 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (811)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/134aded0678dd516bde28ed09b09eb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:08:57.910 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:08:57.914 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:08:57.914 [Task submitter] INFO nextflow.Session - [aa/9f6e43] Submitted process > POREC:digest_align_annotate (812) Aug-17 21:10:13.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 821; name: POREC:digest_align_annotate (812); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9f6e433faa3a8fb752766a508e4326] Aug-17 21:10:13.416 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (812)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/9f6e433faa3a8fb752766a508e4326/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:10:13.416 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:10:13.422 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:10:13.464 [Task submitter] INFO nextflow.Session - [9a/fde157] Submitted process > POREC:digest_align_annotate (813) Aug-17 21:11:10.636 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 823; name: POREC:digest_align_annotate (814); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/73b8dce39a593f1a68a368f9a8e9be] ~> TaskHandler[id: 826; name: POREC:digest_align_annotate (817); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/b6cac96d4f39ba3b7cac042947b5d9] ~> TaskHandler[id: 827; name: POREC:digest_align_annotate (818); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/606231525507264d314f11b732c9ef] ~> TaskHandler[id: 828; name: POREC:digest_align_annotate (819); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/8680b348fbcb451b488d39f7fb25f9] ~> TaskHandler[id: 829; name: POREC:digest_align_annotate (820); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b5c8bfe4817ae36ab31a01de13e2cf] ~> TaskHandler[id: 830; name: POREC:digest_align_annotate (821); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/5d95d18e439c94671010b621a87241] ~> TaskHandler[id: 831; name: POREC:digest_align_annotate (822); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/96b4d91eec7de2ef0f4a5a189dbefb] ~> TaskHandler[id: 832; name: POREC:digest_align_annotate (823); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a3cba46369821cfedb27cc3ecbf3e1] ~> TaskHandler[id: 833; name: POREC:digest_align_annotate (824); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/590f0351d0e7e070a1bd628236ccb5] ~> TaskHandler[id: 834; name: POREC:digest_align_annotate (825); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/6edcbb98e076ae7b7c7b15ef34d325] .. remaining tasks omitted. Aug-17 21:11:38.769 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 822; name: POREC:digest_align_annotate (813); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/fde15707d676dae2f6d40cbc33487c] Aug-17 21:11:38.770 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (813)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/fde15707d676dae2f6d40cbc33487c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:11:38.771 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:11:38.775 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:11:38.775 [Task submitter] INFO nextflow.Session - [d9/73b8dc] Submitted process > POREC:digest_align_annotate (814) Aug-17 21:13:08.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 823; name: POREC:digest_align_annotate (814); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/73b8dce39a593f1a68a368f9a8e9be] Aug-17 21:13:08.113 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (814)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/73b8dce39a593f1a68a368f9a8e9be/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:13:08.121 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:13:08.139 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:13:08.139 [Task submitter] INFO nextflow.Session - [ee/b6cac9] Submitted process > POREC:digest_align_annotate (817) Aug-17 21:13:43.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 826; name: POREC:digest_align_annotate (817); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/b6cac96d4f39ba3b7cac042947b5d9] Aug-17 21:14:37.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 826; name: POREC:digest_align_annotate (817); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/b6cac96d4f39ba3b7cac042947b5d9] Aug-17 21:14:37.388 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (817)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/b6cac96d4f39ba3b7cac042947b5d9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:14:37.389 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:14:37.394 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:14:37.394 [Task submitter] INFO nextflow.Session - [03/606231] Submitted process > POREC:digest_align_annotate (818) Aug-17 21:16:04.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 827; name: POREC:digest_align_annotate (818); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/606231525507264d314f11b732c9ef] Aug-17 21:16:04.670 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (818)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/606231525507264d314f11b732c9ef/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:16:04.671 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:16:04.675 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:16:04.675 [Task submitter] INFO nextflow.Session - [8d/8680b3] Submitted process > POREC:digest_align_annotate (819) Aug-17 21:16:10.700 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 829; name: POREC:digest_align_annotate (820); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b5c8bfe4817ae36ab31a01de13e2cf] ~> TaskHandler[id: 830; name: POREC:digest_align_annotate (821); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/5d95d18e439c94671010b621a87241] ~> TaskHandler[id: 831; name: POREC:digest_align_annotate (822); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/96b4d91eec7de2ef0f4a5a189dbefb] ~> TaskHandler[id: 832; name: POREC:digest_align_annotate (823); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a3cba46369821cfedb27cc3ecbf3e1] ~> TaskHandler[id: 833; name: POREC:digest_align_annotate (824); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/590f0351d0e7e070a1bd628236ccb5] ~> TaskHandler[id: 834; name: POREC:digest_align_annotate (825); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/6edcbb98e076ae7b7c7b15ef34d325] ~> TaskHandler[id: 836; name: POREC:digest_align_annotate (827); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/304b60ee60a99dcfdc65f9ca3c6617] ~> TaskHandler[id: 835; name: POREC:digest_align_annotate (826); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/d5320d5e219ce82013c8fb2f13534f] ~> TaskHandler[id: 839; name: POREC:digest_align_annotate (830); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/886e07c1dfcc90bf4e5e9b96e85cc9] ~> TaskHandler[id: 838; name: POREC:digest_align_annotate (829); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/22f9e44acd5663b2bf86a6b78e70bb] .. remaining tasks omitted. Aug-17 21:17:28.531 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 828; name: POREC:digest_align_annotate (819); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/8680b348fbcb451b488d39f7fb25f9] Aug-17 21:17:28.532 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (819)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/8680b348fbcb451b488d39f7fb25f9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:17:28.533 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:17:28.557 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:17:28.558 [Task submitter] INFO nextflow.Session - [1e/b5c8bf] Submitted process > POREC:digest_align_annotate (820) Aug-17 21:18:43.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 829; name: POREC:digest_align_annotate (820); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b5c8bfe4817ae36ab31a01de13e2cf] Aug-17 21:18:56.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 829; name: POREC:digest_align_annotate (820); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b5c8bfe4817ae36ab31a01de13e2cf] Aug-17 21:18:56.806 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (820)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/b5c8bfe4817ae36ab31a01de13e2cf/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:18:56.807 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:18:56.811 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:18:56.812 [Task submitter] INFO nextflow.Session - [c0/5d95d1] Submitted process > POREC:digest_align_annotate (821) Aug-17 21:20:20.539 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 830; name: POREC:digest_align_annotate (821); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/5d95d18e439c94671010b621a87241] Aug-17 21:20:20.539 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (821)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/5d95d18e439c94671010b621a87241/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:20:20.543 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:20:20.556 [Task submitter] INFO nextflow.Session - [8a/96b4d9] Submitted process > POREC:digest_align_annotate (822) Aug-17 21:20:20.557 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:21:10.708 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 832; name: POREC:digest_align_annotate (823); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a3cba46369821cfedb27cc3ecbf3e1] ~> TaskHandler[id: 833; name: POREC:digest_align_annotate (824); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/590f0351d0e7e070a1bd628236ccb5] ~> TaskHandler[id: 834; name: POREC:digest_align_annotate (825); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/6edcbb98e076ae7b7c7b15ef34d325] ~> TaskHandler[id: 836; name: POREC:digest_align_annotate (827); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/304b60ee60a99dcfdc65f9ca3c6617] ~> TaskHandler[id: 835; name: POREC:digest_align_annotate (826); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/d5320d5e219ce82013c8fb2f13534f] ~> TaskHandler[id: 839; name: POREC:digest_align_annotate (830); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/886e07c1dfcc90bf4e5e9b96e85cc9] ~> TaskHandler[id: 838; name: POREC:digest_align_annotate (829); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/22f9e44acd5663b2bf86a6b78e70bb] ~> TaskHandler[id: 840; name: POREC:digest_align_annotate (831); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/a2a781e20b2692499595986bb280f7] ~> TaskHandler[id: 843; name: POREC:digest_align_annotate (834); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/56ea262430eca9c868cc044475399c] ~> TaskHandler[id: 844; name: POREC:digest_align_annotate (835); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/4c8293f24a5937219adfb8317564fc] .. remaining tasks omitted. Aug-17 21:21:45.727 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 831; name: POREC:digest_align_annotate (822); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/96b4d91eec7de2ef0f4a5a189dbefb] Aug-17 21:21:45.728 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (822)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/96b4d91eec7de2ef0f4a5a189dbefb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:21:45.728 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:21:45.734 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:21:45.734 [Task submitter] INFO nextflow.Session - [4d/a3cba4] Submitted process > POREC:digest_align_annotate (823) Aug-17 21:23:11.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 832; name: POREC:digest_align_annotate (823); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a3cba46369821cfedb27cc3ecbf3e1] Aug-17 21:23:11.305 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (823)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a3cba46369821cfedb27cc3ecbf3e1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:23:11.326 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:23:11.336 [Task submitter] INFO nextflow.Session - [f5/590f03] Submitted process > POREC:digest_align_annotate (824) Aug-17 21:23:11.337 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:23:43.847 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 833; name: POREC:digest_align_annotate (824); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/590f0351d0e7e070a1bd628236ccb5] Aug-17 21:24:43.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 833; name: POREC:digest_align_annotate (824); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/590f0351d0e7e070a1bd628236ccb5] Aug-17 21:24:43.286 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (824)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/590f0351d0e7e070a1bd628236ccb5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:24:43.287 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:24:43.291 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:24:43.292 [Task submitter] INFO nextflow.Session - [87/6edcbb] Submitted process > POREC:digest_align_annotate (825) Aug-17 21:26:11.562 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 836; name: POREC:digest_align_annotate (827); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/304b60ee60a99dcfdc65f9ca3c6617] ~> TaskHandler[id: 835; name: POREC:digest_align_annotate (826); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/d5320d5e219ce82013c8fb2f13534f] ~> TaskHandler[id: 839; name: POREC:digest_align_annotate (830); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/886e07c1dfcc90bf4e5e9b96e85cc9] ~> TaskHandler[id: 838; name: POREC:digest_align_annotate (829); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/22f9e44acd5663b2bf86a6b78e70bb] ~> TaskHandler[id: 840; name: POREC:digest_align_annotate (831); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/a2a781e20b2692499595986bb280f7] ~> TaskHandler[id: 843; name: POREC:digest_align_annotate (834); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/56ea262430eca9c868cc044475399c] ~> TaskHandler[id: 844; name: POREC:digest_align_annotate (835); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/4c8293f24a5937219adfb8317564fc] ~> TaskHandler[id: 845; name: POREC:digest_align_annotate (836); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/13c2ef4999786236f9517f2af7a23e] ~> TaskHandler[id: 846; name: POREC:digest_align_annotate (837); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/ecab3251ff8c01d562edfc454cf8be] ~> TaskHandler[id: 847; name: POREC:digest_align_annotate (838); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/286d9c183f10f6a78cab288fb8bb7a] .. remaining tasks omitted. Aug-17 21:26:15.559 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 834; name: POREC:digest_align_annotate (825); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/6edcbb98e076ae7b7c7b15ef34d325] Aug-17 21:26:15.559 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (825)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/6edcbb98e076ae7b7c7b15ef34d325/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:26:15.560 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:26:15.565 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:26:15.565 [Task submitter] INFO nextflow.Session - [1f/304b60] Submitted process > POREC:digest_align_annotate (827) Aug-17 21:27:40.258 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 836; name: POREC:digest_align_annotate (827); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/304b60ee60a99dcfdc65f9ca3c6617] Aug-17 21:27:40.274 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (827)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/304b60ee60a99dcfdc65f9ca3c6617/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:27:40.274 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:27:40.291 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:27:40.334 [Task submitter] INFO nextflow.Session - [99/d5320d] Submitted process > POREC:digest_align_annotate (826) Aug-17 21:28:43.935 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 835; name: POREC:digest_align_annotate (826); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/d5320d5e219ce82013c8fb2f13534f] Aug-17 21:29:14.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 835; name: POREC:digest_align_annotate (826); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/d5320d5e219ce82013c8fb2f13534f] Aug-17 21:29:14.690 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (826)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/d5320d5e219ce82013c8fb2f13534f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:29:14.691 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:29:14.695 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:29:14.696 [Task submitter] INFO nextflow.Session - [46/886e07] Submitted process > POREC:digest_align_annotate (830) Aug-17 21:30:45.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 839; name: POREC:digest_align_annotate (830); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/886e07c1dfcc90bf4e5e9b96e85cc9] Aug-17 21:30:45.229 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (830)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/886e07c1dfcc90bf4e5e9b96e85cc9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:30:45.230 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:30:45.235 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:30:45.235 [Task submitter] INFO nextflow.Session - [81/22f9e4] Submitted process > POREC:digest_align_annotate (829) Aug-17 21:31:12.326 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 840; name: POREC:digest_align_annotate (831); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/a2a781e20b2692499595986bb280f7] ~> TaskHandler[id: 843; name: POREC:digest_align_annotate (834); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/56ea262430eca9c868cc044475399c] ~> TaskHandler[id: 844; name: POREC:digest_align_annotate (835); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/4c8293f24a5937219adfb8317564fc] ~> TaskHandler[id: 845; name: POREC:digest_align_annotate (836); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/13c2ef4999786236f9517f2af7a23e] ~> TaskHandler[id: 846; name: POREC:digest_align_annotate (837); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/ecab3251ff8c01d562edfc454cf8be] ~> TaskHandler[id: 847; name: POREC:digest_align_annotate (838); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/286d9c183f10f6a78cab288fb8bb7a] ~> TaskHandler[id: 848; name: POREC:digest_align_annotate (839); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/7421e919f5c320aab6e68f95551718] ~> TaskHandler[id: 850; name: POREC:digest_align_annotate (841); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/fac1ceb72a45b0a203556adcef1a0f] ~> TaskHandler[id: 881; name: POREC:digest_align_annotate (872); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/f460e70113ac3d59dc0b233796034e] ~> TaskHandler[id: 852; name: POREC:digest_align_annotate (843); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/f554b8df65c586a6e8086c9bd96fb2] .. remaining tasks omitted. Aug-17 21:32:22.254 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 838; name: POREC:digest_align_annotate (829); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/22f9e44acd5663b2bf86a6b78e70bb] Aug-17 21:32:22.255 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (829)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/22f9e44acd5663b2bf86a6b78e70bb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:32:22.255 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:32:22.260 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:32:22.260 [Task submitter] INFO nextflow.Session - [24/a2a781] Submitted process > POREC:digest_align_annotate (831) Aug-17 21:33:43.947 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 840; name: POREC:digest_align_annotate (831); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/a2a781e20b2692499595986bb280f7] Aug-17 21:34:01.038 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 840; name: POREC:digest_align_annotate (831); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/a2a781e20b2692499595986bb280f7] Aug-17 21:34:01.039 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (831)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/a2a781e20b2692499595986bb280f7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:34:01.040 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:34:01.046 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:34:01.046 [Task submitter] INFO nextflow.Session - [00/56ea26] Submitted process > POREC:digest_align_annotate (834) Aug-17 21:35:49.439 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 843; name: POREC:digest_align_annotate (834); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/56ea262430eca9c868cc044475399c] Aug-17 21:35:49.440 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (834)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/56ea262430eca9c868cc044475399c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:35:49.441 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:35:49.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:35:49.445 [Task submitter] INFO nextflow.Session - [2a/4c8293] Submitted process > POREC:digest_align_annotate (835) Aug-17 21:36:12.523 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 845; name: POREC:digest_align_annotate (836); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/13c2ef4999786236f9517f2af7a23e] ~> TaskHandler[id: 846; name: POREC:digest_align_annotate (837); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/ecab3251ff8c01d562edfc454cf8be] ~> TaskHandler[id: 847; name: POREC:digest_align_annotate (838); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/286d9c183f10f6a78cab288fb8bb7a] ~> TaskHandler[id: 848; name: POREC:digest_align_annotate (839); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/7421e919f5c320aab6e68f95551718] ~> TaskHandler[id: 850; name: POREC:digest_align_annotate (841); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/fac1ceb72a45b0a203556adcef1a0f] ~> TaskHandler[id: 881; name: POREC:digest_align_annotate (872); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/f460e70113ac3d59dc0b233796034e] ~> TaskHandler[id: 852; name: POREC:digest_align_annotate (843); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/f554b8df65c586a6e8086c9bd96fb2] ~> TaskHandler[id: 853; name: POREC:digest_align_annotate (844); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/9380ebc5f71dcb8b86ca2516addaef] ~> TaskHandler[id: 854; name: POREC:digest_align_annotate (845); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/6875c63da3016c8642b65c1e3f6ed0] ~> TaskHandler[id: 885; name: POREC:digest_align_annotate (876); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e62941361d574869337715cce00001] .. remaining tasks omitted. Aug-17 21:37:16.008 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 844; name: POREC:digest_align_annotate (835); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/4c8293f24a5937219adfb8317564fc] Aug-17 21:37:16.008 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (835)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/4c8293f24a5937219adfb8317564fc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:37:16.009 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:37:16.013 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:37:16.014 [Task submitter] INFO nextflow.Session - [4e/13c2ef] Submitted process > POREC:digest_align_annotate (836) Aug-17 21:38:44.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 845; name: POREC:digest_align_annotate (836); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/13c2ef4999786236f9517f2af7a23e] Aug-17 21:38:56.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 845; name: POREC:digest_align_annotate (836); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/13c2ef4999786236f9517f2af7a23e] Aug-17 21:38:56.529 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (836)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/13c2ef4999786236f9517f2af7a23e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:38:56.530 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:38:56.535 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:38:56.535 [Task submitter] INFO nextflow.Session - [de/ecab32] Submitted process > POREC:digest_align_annotate (837) Aug-17 21:40:31.952 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 846; name: POREC:digest_align_annotate (837); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/ecab3251ff8c01d562edfc454cf8be] Aug-17 21:40:31.952 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (837)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/ecab3251ff8c01d562edfc454cf8be/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:40:31.953 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:40:31.957 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:40:31.957 [Task submitter] INFO nextflow.Session - [b6/286d9c] Submitted process > POREC:digest_align_annotate (838) Aug-17 21:41:13.123 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 848; name: POREC:digest_align_annotate (839); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/7421e919f5c320aab6e68f95551718] ~> TaskHandler[id: 850; name: POREC:digest_align_annotate (841); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/fac1ceb72a45b0a203556adcef1a0f] ~> TaskHandler[id: 881; name: POREC:digest_align_annotate (872); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/f460e70113ac3d59dc0b233796034e] ~> TaskHandler[id: 852; name: POREC:digest_align_annotate (843); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/f554b8df65c586a6e8086c9bd96fb2] ~> TaskHandler[id: 853; name: POREC:digest_align_annotate (844); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/9380ebc5f71dcb8b86ca2516addaef] ~> TaskHandler[id: 854; name: POREC:digest_align_annotate (845); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/6875c63da3016c8642b65c1e3f6ed0] ~> TaskHandler[id: 885; name: POREC:digest_align_annotate (876); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e62941361d574869337715cce00001] ~> TaskHandler[id: 857; name: POREC:digest_align_annotate (848); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/e121970d2cabafd41e7748acf35320] ~> TaskHandler[id: 858; name: POREC:digest_align_annotate (849); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/8e4c6f3befe9da6941a86c2555b83a] ~> TaskHandler[id: 855; name: POREC:digest_align_annotate (846); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/b74ea8ab01d79e7a50a5b10fa40d77] .. remaining tasks omitted. Aug-17 21:42:12.945 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 847; name: POREC:digest_align_annotate (838); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/286d9c183f10f6a78cab288fb8bb7a] Aug-17 21:42:12.946 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (838)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/286d9c183f10f6a78cab288fb8bb7a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:42:12.946 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:42:12.951 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:42:12.951 [Task submitter] INFO nextflow.Session - [68/7421e9] Submitted process > POREC:digest_align_annotate (839) Aug-17 21:43:38.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 848; name: POREC:digest_align_annotate (839); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/7421e919f5c320aab6e68f95551718] Aug-17 21:43:38.561 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (839)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/7421e919f5c320aab6e68f95551718/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:43:38.562 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:43:38.565 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:43:38.581 [Task submitter] INFO nextflow.Session - [57/fac1ce] Submitted process > POREC:digest_align_annotate (841) Aug-17 21:43:44.066 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 850; name: POREC:digest_align_annotate (841); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/fac1ceb72a45b0a203556adcef1a0f] Aug-17 21:45:00.153 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 850; name: POREC:digest_align_annotate (841); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/fac1ceb72a45b0a203556adcef1a0f] Aug-17 21:45:00.154 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (841)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/fac1ceb72a45b0a203556adcef1a0f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:45:00.154 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:45:00.159 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:45:00.159 [Task submitter] INFO nextflow.Session - [ea/f460e7] Submitted process > POREC:digest_align_annotate (872) Aug-17 21:46:13.376 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 852; name: POREC:digest_align_annotate (843); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/f554b8df65c586a6e8086c9bd96fb2] ~> TaskHandler[id: 853; name: POREC:digest_align_annotate (844); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/9380ebc5f71dcb8b86ca2516addaef] ~> TaskHandler[id: 854; name: POREC:digest_align_annotate (845); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/6875c63da3016c8642b65c1e3f6ed0] ~> TaskHandler[id: 885; name: POREC:digest_align_annotate (876); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e62941361d574869337715cce00001] ~> TaskHandler[id: 857; name: POREC:digest_align_annotate (848); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/e121970d2cabafd41e7748acf35320] ~> TaskHandler[id: 858; name: POREC:digest_align_annotate (849); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/8e4c6f3befe9da6941a86c2555b83a] ~> TaskHandler[id: 855; name: POREC:digest_align_annotate (846); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/b74ea8ab01d79e7a50a5b10fa40d77] ~> TaskHandler[id: 859; name: POREC:digest_align_annotate (850); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/13062824c95978a37a69d40b0c89c7] ~> TaskHandler[id: 856; name: POREC:digest_align_annotate (847); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/8053d0edd296cb91853843f9266361] ~> TaskHandler[id: 860; name: POREC:digest_align_annotate (851); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/dd94e2fa26b401e64de72e42c1ef22] .. remaining tasks omitted. Aug-17 21:46:28.018 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 881; name: POREC:digest_align_annotate (872); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/f460e70113ac3d59dc0b233796034e] Aug-17 21:46:28.036 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (872)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/f460e70113ac3d59dc0b233796034e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:46:28.037 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:46:28.042 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:46:28.043 [Task submitter] INFO nextflow.Session - [05/f554b8] Submitted process > POREC:digest_align_annotate (843) Aug-17 21:47:54.283 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 852; name: POREC:digest_align_annotate (843); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/f554b8df65c586a6e8086c9bd96fb2] Aug-17 21:47:54.284 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (843)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/f554b8df65c586a6e8086c9bd96fb2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:47:54.284 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:47:54.288 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:47:54.288 [Task submitter] INFO nextflow.Session - [b8/9380eb] Submitted process > POREC:digest_align_annotate (844) Aug-17 21:48:44.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 853; name: POREC:digest_align_annotate (844); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/9380ebc5f71dcb8b86ca2516addaef] Aug-17 21:49:15.778 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 853; name: POREC:digest_align_annotate (844); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/9380ebc5f71dcb8b86ca2516addaef] Aug-17 21:49:15.779 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (844)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/9380ebc5f71dcb8b86ca2516addaef/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:49:15.779 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:49:15.785 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:49:15.785 [Task submitter] INFO nextflow.Session - [79/6875c6] Submitted process > POREC:digest_align_annotate (845) Aug-17 21:50:40.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 854; name: POREC:digest_align_annotate (845); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/6875c63da3016c8642b65c1e3f6ed0] Aug-17 21:50:40.209 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (845)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/6875c63da3016c8642b65c1e3f6ed0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:50:40.210 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:50:40.214 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:50:40.227 [Task submitter] INFO nextflow.Session - [c9/e62941] Submitted process > POREC:digest_align_annotate (876) Aug-17 21:51:14.343 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 857; name: POREC:digest_align_annotate (848); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/e121970d2cabafd41e7748acf35320] ~> TaskHandler[id: 858; name: POREC:digest_align_annotate (849); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/8e4c6f3befe9da6941a86c2555b83a] ~> TaskHandler[id: 855; name: POREC:digest_align_annotate (846); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/b74ea8ab01d79e7a50a5b10fa40d77] ~> TaskHandler[id: 859; name: POREC:digest_align_annotate (850); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/13062824c95978a37a69d40b0c89c7] ~> TaskHandler[id: 856; name: POREC:digest_align_annotate (847); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/8053d0edd296cb91853843f9266361] ~> TaskHandler[id: 860; name: POREC:digest_align_annotate (851); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/dd94e2fa26b401e64de72e42c1ef22] ~> TaskHandler[id: 861; name: POREC:digest_align_annotate (852); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/4f1d88dbb3130516e2e353477bb8db] ~> TaskHandler[id: 862; name: POREC:digest_align_annotate (853); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/2a8f73c2d5063d2ff97297943e64d9] ~> TaskHandler[id: 863; name: POREC:digest_align_annotate (854); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/02aa88b0559462f395116450417b5d] ~> TaskHandler[id: 864; name: POREC:digest_align_annotate (855); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/e3e5d5fdf9c54e1b0ab50b476dfdff] .. remaining tasks omitted. Aug-17 21:52:08.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 885; name: POREC:digest_align_annotate (876); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e62941361d574869337715cce00001] Aug-17 21:52:08.481 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (876)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e62941361d574869337715cce00001/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:52:08.482 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:52:08.487 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:52:08.488 [Task submitter] INFO nextflow.Session - [eb/e12197] Submitted process > POREC:digest_align_annotate (848) Aug-17 21:53:33.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 857; name: POREC:digest_align_annotate (848); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/e121970d2cabafd41e7748acf35320] Aug-17 21:53:33.792 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (848)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/e121970d2cabafd41e7748acf35320/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:53:33.796 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:53:33.806 [Task submitter] INFO nextflow.Session - [c9/8e4c6f] Submitted process > POREC:digest_align_annotate (849) Aug-17 21:53:33.807 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:53:44.102 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 858; name: POREC:digest_align_annotate (849); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/8e4c6f3befe9da6941a86c2555b83a] Aug-17 21:54:58.807 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 858; name: POREC:digest_align_annotate (849); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/8e4c6f3befe9da6941a86c2555b83a] Aug-17 21:54:58.808 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (849)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/8e4c6f3befe9da6941a86c2555b83a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:54:58.808 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:54:58.813 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:54:58.813 [Task submitter] INFO nextflow.Session - [d7/b74ea8] Submitted process > POREC:digest_align_annotate (846) Aug-17 21:56:15.043 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 859; name: POREC:digest_align_annotate (850); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/13062824c95978a37a69d40b0c89c7] ~> TaskHandler[id: 856; name: POREC:digest_align_annotate (847); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/8053d0edd296cb91853843f9266361] ~> TaskHandler[id: 860; name: POREC:digest_align_annotate (851); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/dd94e2fa26b401e64de72e42c1ef22] ~> TaskHandler[id: 861; name: POREC:digest_align_annotate (852); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/4f1d88dbb3130516e2e353477bb8db] ~> TaskHandler[id: 862; name: POREC:digest_align_annotate (853); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/2a8f73c2d5063d2ff97297943e64d9] ~> TaskHandler[id: 863; name: POREC:digest_align_annotate (854); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/02aa88b0559462f395116450417b5d] ~> TaskHandler[id: 864; name: POREC:digest_align_annotate (855); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/e3e5d5fdf9c54e1b0ab50b476dfdff] ~> TaskHandler[id: 865; name: POREC:digest_align_annotate (856); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/270f6f2a2936f9ca680cd3c9bc60e5] ~> TaskHandler[id: 866; name: POREC:digest_align_annotate (857); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/5c2b46c2042b1bc023df2515f21eee] ~> TaskHandler[id: 867; name: POREC:digest_align_annotate (858); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f089c72ca663c92241fc03f5d997a7] .. remaining tasks omitted. Aug-17 21:56:28.163 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 855; name: POREC:digest_align_annotate (846); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/b74ea8ab01d79e7a50a5b10fa40d77] Aug-17 21:56:28.164 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (846)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d7/b74ea8ab01d79e7a50a5b10fa40d77/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:56:28.164 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:56:28.169 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:56:28.169 [Task submitter] INFO nextflow.Session - [43/130628] Submitted process > POREC:digest_align_annotate (850) Aug-17 21:57:58.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 859; name: POREC:digest_align_annotate (850); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/13062824c95978a37a69d40b0c89c7] Aug-17 21:57:58.821 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (850)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/13062824c95978a37a69d40b0c89c7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:57:58.821 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:57:58.826 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:57:58.827 [Task submitter] INFO nextflow.Session - [68/8053d0] Submitted process > POREC:digest_align_annotate (847) Aug-17 21:58:44.179 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 856; name: POREC:digest_align_annotate (847); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/8053d0edd296cb91853843f9266361] Aug-17 21:59:25.532 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 856; name: POREC:digest_align_annotate (847); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/8053d0edd296cb91853843f9266361] Aug-17 21:59:25.533 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (847)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/8053d0edd296cb91853843f9266361/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 21:59:25.534 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 21:59:25.538 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 21:59:25.538 [Task submitter] INFO nextflow.Session - [55/dd94e2] Submitted process > POREC:digest_align_annotate (851) Aug-17 22:00:53.330 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 860; name: POREC:digest_align_annotate (851); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/dd94e2fa26b401e64de72e42c1ef22] Aug-17 22:00:53.331 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (851)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/dd94e2fa26b401e64de72e42c1ef22/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:00:53.335 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:00:53.349 [Task submitter] INFO nextflow.Session - [1f/4f1d88] Submitted process > POREC:digest_align_annotate (852) Aug-17 22:00:53.350 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:01:15.425 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 862; name: POREC:digest_align_annotate (853); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/2a8f73c2d5063d2ff97297943e64d9] ~> TaskHandler[id: 863; name: POREC:digest_align_annotate (854); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/02aa88b0559462f395116450417b5d] ~> TaskHandler[id: 864; name: POREC:digest_align_annotate (855); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/e3e5d5fdf9c54e1b0ab50b476dfdff] ~> TaskHandler[id: 865; name: POREC:digest_align_annotate (856); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/270f6f2a2936f9ca680cd3c9bc60e5] ~> TaskHandler[id: 866; name: POREC:digest_align_annotate (857); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/5c2b46c2042b1bc023df2515f21eee] ~> TaskHandler[id: 867; name: POREC:digest_align_annotate (858); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f089c72ca663c92241fc03f5d997a7] ~> TaskHandler[id: 868; name: POREC:digest_align_annotate (859); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/35e3b5c26eb435abc1c84937d2488c] ~> TaskHandler[id: 869; name: POREC:digest_align_annotate (860); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/2a563df3aa78aa8a0d6f8912ef1049] ~> TaskHandler[id: 870; name: POREC:digest_align_annotate (861); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/e7fe51bbf7ef15c7e33ad5fb5f775c] ~> TaskHandler[id: 871; name: POREC:digest_align_annotate (862); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/017264a94459d08c9c846f2c750752] .. remaining tasks omitted. Aug-17 22:02:19.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 861; name: POREC:digest_align_annotate (852); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/4f1d88dbb3130516e2e353477bb8db] Aug-17 22:02:19.315 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (852)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/4f1d88dbb3130516e2e353477bb8db/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:02:19.316 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:02:19.321 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:02:19.321 [Task submitter] INFO nextflow.Session - [75/2a8f73] Submitted process > POREC:digest_align_annotate (853) Aug-17 22:03:44.227 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 862; name: POREC:digest_align_annotate (853); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/2a8f73c2d5063d2ff97297943e64d9] Aug-17 22:03:44.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 862; name: POREC:digest_align_annotate (853); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/2a8f73c2d5063d2ff97297943e64d9] Aug-17 22:03:44.362 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (853)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/2a8f73c2d5063d2ff97297943e64d9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:03:44.363 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:03:44.368 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:03:44.368 [Task submitter] INFO nextflow.Session - [5a/02aa88] Submitted process > POREC:digest_align_annotate (854) Aug-17 22:05:13.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 863; name: POREC:digest_align_annotate (854); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/02aa88b0559462f395116450417b5d] Aug-17 22:05:13.931 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (854)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/02aa88b0559462f395116450417b5d/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:05:13.932 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:05:13.936 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:05:13.937 [Task submitter] INFO nextflow.Session - [5c/e3e5d5] Submitted process > POREC:digest_align_annotate (855) Aug-17 22:06:16.124 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 865; name: POREC:digest_align_annotate (856); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/270f6f2a2936f9ca680cd3c9bc60e5] ~> TaskHandler[id: 866; name: POREC:digest_align_annotate (857); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/5c2b46c2042b1bc023df2515f21eee] ~> TaskHandler[id: 867; name: POREC:digest_align_annotate (858); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f089c72ca663c92241fc03f5d997a7] ~> TaskHandler[id: 868; name: POREC:digest_align_annotate (859); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/35e3b5c26eb435abc1c84937d2488c] ~> TaskHandler[id: 869; name: POREC:digest_align_annotate (860); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/2a563df3aa78aa8a0d6f8912ef1049] ~> TaskHandler[id: 870; name: POREC:digest_align_annotate (861); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/e7fe51bbf7ef15c7e33ad5fb5f775c] ~> TaskHandler[id: 871; name: POREC:digest_align_annotate (862); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/017264a94459d08c9c846f2c750752] ~> TaskHandler[id: 872; name: POREC:digest_align_annotate (863); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/739f8f97c5e511021f51e6ada123ef] ~> TaskHandler[id: 873; name: POREC:digest_align_annotate (864); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/0bd8de342466e2acfcb71fe35bd2a5] ~> TaskHandler[id: 874; name: POREC:digest_align_annotate (865); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/332d33aa1161ed2dd22c804e73bb44] .. remaining tasks omitted. Aug-17 22:06:44.900 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 864; name: POREC:digest_align_annotate (855); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/e3e5d5fdf9c54e1b0ab50b476dfdff] Aug-17 22:06:44.901 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (855)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/e3e5d5fdf9c54e1b0ab50b476dfdff/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:06:44.902 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:06:44.907 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:06:44.908 [Task submitter] INFO nextflow.Session - [62/270f6f] Submitted process > POREC:digest_align_annotate (856) Aug-17 22:08:30.853 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 865; name: POREC:digest_align_annotate (856); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/270f6f2a2936f9ca680cd3c9bc60e5] Aug-17 22:08:30.854 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (856)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/270f6f2a2936f9ca680cd3c9bc60e5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:08:30.855 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:08:30.859 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:08:30.859 [Task submitter] INFO nextflow.Session - [dd/5c2b46] Submitted process > POREC:digest_align_annotate (857) Aug-17 22:08:44.272 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 866; name: POREC:digest_align_annotate (857); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/5c2b46c2042b1bc023df2515f21eee] Aug-17 22:10:09.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 866; name: POREC:digest_align_annotate (857); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/5c2b46c2042b1bc023df2515f21eee] Aug-17 22:10:09.075 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (857)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/5c2b46c2042b1bc023df2515f21eee/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:10:09.075 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:10:09.081 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:10:09.081 [Task submitter] INFO nextflow.Session - [54/f089c7] Submitted process > POREC:digest_align_annotate (858) Aug-17 22:11:16.279 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 868; name: POREC:digest_align_annotate (859); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/35e3b5c26eb435abc1c84937d2488c] ~> TaskHandler[id: 869; name: POREC:digest_align_annotate (860); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/2a563df3aa78aa8a0d6f8912ef1049] ~> TaskHandler[id: 870; name: POREC:digest_align_annotate (861); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/e7fe51bbf7ef15c7e33ad5fb5f775c] ~> TaskHandler[id: 871; name: POREC:digest_align_annotate (862); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/017264a94459d08c9c846f2c750752] ~> TaskHandler[id: 872; name: POREC:digest_align_annotate (863); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/739f8f97c5e511021f51e6ada123ef] ~> TaskHandler[id: 873; name: POREC:digest_align_annotate (864); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/0bd8de342466e2acfcb71fe35bd2a5] ~> TaskHandler[id: 874; name: POREC:digest_align_annotate (865); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/332d33aa1161ed2dd22c804e73bb44] ~> TaskHandler[id: 906; name: POREC:digest_align_annotate (897); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/4c5fbbd172767b8889958d903e6316] ~> TaskHandler[id: 875; name: POREC:digest_align_annotate (866); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/2da377b6808f20c8ade33f3af74f78] ~> TaskHandler[id: 876; name: POREC:digest_align_annotate (867); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/202740f23f374462ea39af226f29cc] .. remaining tasks omitted. Aug-17 22:11:38.563 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 867; name: POREC:digest_align_annotate (858); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f089c72ca663c92241fc03f5d997a7] Aug-17 22:11:38.563 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (858)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/f089c72ca663c92241fc03f5d997a7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:11:38.564 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:11:38.568 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:11:38.568 [Task submitter] INFO nextflow.Session - [9b/35e3b5] Submitted process > POREC:digest_align_annotate (859) Aug-17 22:13:03.596 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 868; name: POREC:digest_align_annotate (859); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/35e3b5c26eb435abc1c84937d2488c] Aug-17 22:13:03.597 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (859)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/35e3b5c26eb435abc1c84937d2488c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:13:03.597 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:13:03.602 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:13:03.602 [Task submitter] INFO nextflow.Session - [19/2a563d] Submitted process > POREC:digest_align_annotate (860) Aug-17 22:13:44.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 869; name: POREC:digest_align_annotate (860); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/2a563df3aa78aa8a0d6f8912ef1049] Aug-17 22:14:38.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 869; name: POREC:digest_align_annotate (860); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/2a563df3aa78aa8a0d6f8912ef1049] Aug-17 22:14:38.811 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (860)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/2a563df3aa78aa8a0d6f8912ef1049/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:14:38.812 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:14:38.816 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:14:38.817 [Task submitter] INFO nextflow.Session - [43/e7fe51] Submitted process > POREC:digest_align_annotate (861) Aug-17 22:16:06.357 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 870; name: POREC:digest_align_annotate (861); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/e7fe51bbf7ef15c7e33ad5fb5f775c] Aug-17 22:16:06.358 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (861)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/e7fe51bbf7ef15c7e33ad5fb5f775c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:16:06.359 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:16:06.362 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:16:06.362 [Task submitter] INFO nextflow.Session - [52/017264] Submitted process > POREC:digest_align_annotate (862) Aug-17 22:16:16.400 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 872; name: POREC:digest_align_annotate (863); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/739f8f97c5e511021f51e6ada123ef] ~> TaskHandler[id: 873; name: POREC:digest_align_annotate (864); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/0bd8de342466e2acfcb71fe35bd2a5] ~> TaskHandler[id: 874; name: POREC:digest_align_annotate (865); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/332d33aa1161ed2dd22c804e73bb44] ~> TaskHandler[id: 906; name: POREC:digest_align_annotate (897); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/4c5fbbd172767b8889958d903e6316] ~> TaskHandler[id: 875; name: POREC:digest_align_annotate (866); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/2da377b6808f20c8ade33f3af74f78] ~> TaskHandler[id: 876; name: POREC:digest_align_annotate (867); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/202740f23f374462ea39af226f29cc] ~> TaskHandler[id: 909; name: POREC:digest_align_annotate (900); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/85731bd3cb0d1ca518224e7362b862] ~> TaskHandler[id: 877; name: POREC:digest_align_annotate (868); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/90f15e913dfc66bd754d8f8ce6051a] ~> TaskHandler[id: 911; name: POREC:digest_align_annotate (902); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/b93b8a027ae9bc09732a30a4a2e5b8] ~> TaskHandler[id: 878; name: POREC:digest_align_annotate (869); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f8dfe6bc1cdd2b505838f5245d7af9] .. remaining tasks omitted. Aug-17 22:17:44.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 871; name: POREC:digest_align_annotate (862); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/017264a94459d08c9c846f2c750752] Aug-17 22:17:44.026 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (862)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/017264a94459d08c9c846f2c750752/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:17:44.027 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:17:44.037 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:17:44.037 [Task submitter] INFO nextflow.Session - [ff/739f8f] Submitted process > POREC:digest_align_annotate (863) Aug-17 22:18:44.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 872; name: POREC:digest_align_annotate (863); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/739f8f97c5e511021f51e6ada123ef] Aug-17 22:19:23.319 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 872; name: POREC:digest_align_annotate (863); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/739f8f97c5e511021f51e6ada123ef] Aug-17 22:19:23.319 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (863)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/739f8f97c5e511021f51e6ada123ef/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:19:23.320 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:19:23.325 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:19:23.325 [Task submitter] INFO nextflow.Session - [a4/0bd8de] Submitted process > POREC:digest_align_annotate (864) Aug-17 22:21:00.385 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 873; name: POREC:digest_align_annotate (864); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/0bd8de342466e2acfcb71fe35bd2a5] Aug-17 22:21:00.386 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (864)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/0bd8de342466e2acfcb71fe35bd2a5/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:21:00.386 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:21:00.432 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:21:00.432 [Task submitter] INFO nextflow.Session - [fc/332d33] Submitted process > POREC:digest_align_annotate (865) Aug-17 22:21:16.520 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 906; name: POREC:digest_align_annotate (897); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/4c5fbbd172767b8889958d903e6316] ~> TaskHandler[id: 875; name: POREC:digest_align_annotate (866); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/2da377b6808f20c8ade33f3af74f78] ~> TaskHandler[id: 876; name: POREC:digest_align_annotate (867); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/202740f23f374462ea39af226f29cc] ~> TaskHandler[id: 909; name: POREC:digest_align_annotate (900); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/85731bd3cb0d1ca518224e7362b862] ~> TaskHandler[id: 877; name: POREC:digest_align_annotate (868); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/90f15e913dfc66bd754d8f8ce6051a] ~> TaskHandler[id: 911; name: POREC:digest_align_annotate (902); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/b93b8a027ae9bc09732a30a4a2e5b8] ~> TaskHandler[id: 878; name: POREC:digest_align_annotate (869); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f8dfe6bc1cdd2b505838f5245d7af9] ~> TaskHandler[id: 879; name: POREC:digest_align_annotate (870); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/ae0bd3b295785112ed0353ad2cde84] ~> TaskHandler[id: 880; name: POREC:digest_align_annotate (871); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/fd5f87b8f852e78f73ea40f243301a] ~> TaskHandler[id: 882; name: POREC:digest_align_annotate (873); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/1411d3c494c84ab14e02ce4432e530] .. remaining tasks omitted. Aug-17 22:22:39.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 874; name: POREC:digest_align_annotate (865); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/332d33aa1161ed2dd22c804e73bb44] Aug-17 22:22:39.916 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (865)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/332d33aa1161ed2dd22c804e73bb44/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:22:39.916 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:22:39.922 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:22:39.923 [Task submitter] INFO nextflow.Session - [ef/4c5fbb] Submitted process > POREC:digest_align_annotate (897) Aug-17 22:23:44.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 906; name: POREC:digest_align_annotate (897); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/4c5fbbd172767b8889958d903e6316] Aug-17 22:24:11.952 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 906; name: POREC:digest_align_annotate (897); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/4c5fbbd172767b8889958d903e6316] Aug-17 22:24:11.953 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (897)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/4c5fbbd172767b8889958d903e6316/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:24:11.954 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:24:11.958 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:24:11.958 [Task submitter] INFO nextflow.Session - [c5/2da377] Submitted process > POREC:digest_align_annotate (866) Aug-17 22:25:40.171 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 875; name: POREC:digest_align_annotate (866); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/2da377b6808f20c8ade33f3af74f78] Aug-17 22:25:40.172 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (866)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/2da377b6808f20c8ade33f3af74f78/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:25:40.173 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:25:40.178 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:25:40.179 [Task submitter] INFO nextflow.Session - [7f/202740] Submitted process > POREC:digest_align_annotate (867) Aug-17 22:26:17.302 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 909; name: POREC:digest_align_annotate (900); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/85731bd3cb0d1ca518224e7362b862] ~> TaskHandler[id: 877; name: POREC:digest_align_annotate (868); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/90f15e913dfc66bd754d8f8ce6051a] ~> TaskHandler[id: 911; name: POREC:digest_align_annotate (902); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/b93b8a027ae9bc09732a30a4a2e5b8] ~> TaskHandler[id: 878; name: POREC:digest_align_annotate (869); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f8dfe6bc1cdd2b505838f5245d7af9] ~> TaskHandler[id: 879; name: POREC:digest_align_annotate (870); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/ae0bd3b295785112ed0353ad2cde84] ~> TaskHandler[id: 880; name: POREC:digest_align_annotate (871); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/fd5f87b8f852e78f73ea40f243301a] ~> TaskHandler[id: 882; name: POREC:digest_align_annotate (873); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/1411d3c494c84ab14e02ce4432e530] ~> TaskHandler[id: 883; name: POREC:digest_align_annotate (874); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/53ec4c2ad0561b5079062208f4f767] ~> TaskHandler[id: 884; name: POREC:digest_align_annotate (875); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/04004c0d364e26bd6af17836e9ece0] ~> TaskHandler[id: 886; name: POREC:digest_align_annotate (877); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/77676c786c1d9fe7c1eb35162f270e] .. remaining tasks omitted. Aug-17 22:27:06.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 876; name: POREC:digest_align_annotate (867); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/202740f23f374462ea39af226f29cc] Aug-17 22:27:06.695 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (867)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/202740f23f374462ea39af226f29cc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:27:06.696 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:27:06.701 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:27:06.701 [Task submitter] INFO nextflow.Session - [10/85731b] Submitted process > POREC:digest_align_annotate (900) Aug-17 22:28:37.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 909; name: POREC:digest_align_annotate (900); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/85731bd3cb0d1ca518224e7362b862] Aug-17 22:28:37.303 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (900)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/85731bd3cb0d1ca518224e7362b862/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:28:37.304 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:28:37.309 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:28:37.309 [Task submitter] INFO nextflow.Session - [80/90f15e] Submitted process > POREC:digest_align_annotate (868) Aug-17 22:28:44.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 877; name: POREC:digest_align_annotate (868); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/90f15e913dfc66bd754d8f8ce6051a] Aug-17 22:30:02.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 877; name: POREC:digest_align_annotate (868); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/90f15e913dfc66bd754d8f8ce6051a] Aug-17 22:30:02.161 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (868)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/90f15e913dfc66bd754d8f8ce6051a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:30:02.162 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:30:02.166 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:30:02.166 [Task submitter] INFO nextflow.Session - [f6/b93b8a] Submitted process > POREC:digest_align_annotate (902) Aug-17 22:31:17.388 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 878; name: POREC:digest_align_annotate (869); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f8dfe6bc1cdd2b505838f5245d7af9] ~> TaskHandler[id: 879; name: POREC:digest_align_annotate (870); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/ae0bd3b295785112ed0353ad2cde84] ~> TaskHandler[id: 880; name: POREC:digest_align_annotate (871); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/fd5f87b8f852e78f73ea40f243301a] ~> TaskHandler[id: 882; name: POREC:digest_align_annotate (873); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/1411d3c494c84ab14e02ce4432e530] ~> TaskHandler[id: 883; name: POREC:digest_align_annotate (874); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/53ec4c2ad0561b5079062208f4f767] ~> TaskHandler[id: 884; name: POREC:digest_align_annotate (875); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/04004c0d364e26bd6af17836e9ece0] ~> TaskHandler[id: 886; name: POREC:digest_align_annotate (877); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/77676c786c1d9fe7c1eb35162f270e] ~> TaskHandler[id: 887; name: POREC:digest_align_annotate (878); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/61783d09843edbc39949c3df8cef06] ~> TaskHandler[id: 888; name: POREC:digest_align_annotate (879); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/10d62cd200578d642377dd7fb2ebd1] ~> TaskHandler[id: 889; name: POREC:digest_align_annotate (880); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/5359923a45c5f1c4ade5c000ca0e32] .. remaining tasks omitted. Aug-17 22:31:22.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 911; name: POREC:digest_align_annotate (902); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/b93b8a027ae9bc09732a30a4a2e5b8] Aug-17 22:31:22.024 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (902)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/b93b8a027ae9bc09732a30a4a2e5b8/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:31:22.025 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:31:22.029 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:31:22.029 [Task submitter] INFO nextflow.Session - [62/f8dfe6] Submitted process > POREC:digest_align_annotate (869) Aug-17 22:32:43.499 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 878; name: POREC:digest_align_annotate (869); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f8dfe6bc1cdd2b505838f5245d7af9] Aug-17 22:32:43.514 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (869)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/f8dfe6bc1cdd2b505838f5245d7af9/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:32:43.515 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:32:43.520 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:32:43.520 [Task submitter] INFO nextflow.Session - [33/ae0bd3] Submitted process > POREC:digest_align_annotate (870) Aug-17 22:33:44.590 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 879; name: POREC:digest_align_annotate (870); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/ae0bd3b295785112ed0353ad2cde84] Aug-17 22:34:05.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 879; name: POREC:digest_align_annotate (870); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/ae0bd3b295785112ed0353ad2cde84] Aug-17 22:34:05.475 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (870)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/ae0bd3b295785112ed0353ad2cde84/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:34:05.476 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:34:05.481 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:34:05.481 [Task submitter] INFO nextflow.Session - [63/fd5f87] Submitted process > POREC:digest_align_annotate (871) Aug-17 22:35:29.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 880; name: POREC:digest_align_annotate (871); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/fd5f87b8f852e78f73ea40f243301a] Aug-17 22:35:29.750 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (871)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/fd5f87b8f852e78f73ea40f243301a/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:35:29.750 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:35:29.760 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:35:29.760 [Task submitter] INFO nextflow.Session - [0c/1411d3] Submitted process > POREC:digest_align_annotate (873) Aug-17 22:36:17.905 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 883; name: POREC:digest_align_annotate (874); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/53ec4c2ad0561b5079062208f4f767] ~> TaskHandler[id: 884; name: POREC:digest_align_annotate (875); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/04004c0d364e26bd6af17836e9ece0] ~> TaskHandler[id: 886; name: POREC:digest_align_annotate (877); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/77676c786c1d9fe7c1eb35162f270e] ~> TaskHandler[id: 887; name: POREC:digest_align_annotate (878); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/61783d09843edbc39949c3df8cef06] ~> TaskHandler[id: 888; name: POREC:digest_align_annotate (879); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/10d62cd200578d642377dd7fb2ebd1] ~> TaskHandler[id: 889; name: POREC:digest_align_annotate (880); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/5359923a45c5f1c4ade5c000ca0e32] ~> TaskHandler[id: 890; name: POREC:digest_align_annotate (881); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/36dfd377607f7cbe72eddebdb30800] ~> TaskHandler[id: 891; name: POREC:digest_align_annotate (882); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/aa1164fb5a95c4cbb3502b6334056e] ~> TaskHandler[id: 892; name: POREC:digest_align_annotate (883); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e0961606202fabcd2b17480ea7a019] ~> TaskHandler[id: 893; name: POREC:digest_align_annotate (884); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9beee9ea840a1389ce4fc235964bf6] .. remaining tasks omitted. Aug-17 22:37:10.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 882; name: POREC:digest_align_annotate (873); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/1411d3c494c84ab14e02ce4432e530] Aug-17 22:37:10.777 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (873)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/1411d3c494c84ab14e02ce4432e530/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:37:10.778 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:37:10.849 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:37:10.849 [Task submitter] INFO nextflow.Session - [c6/53ec4c] Submitted process > POREC:digest_align_annotate (874) Aug-17 22:38:44.634 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 883; name: POREC:digest_align_annotate (874); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/53ec4c2ad0561b5079062208f4f767] Aug-17 22:38:49.951 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 883; name: POREC:digest_align_annotate (874); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/53ec4c2ad0561b5079062208f4f767] Aug-17 22:38:49.951 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (874)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/53ec4c2ad0561b5079062208f4f767/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:38:49.952 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:38:49.991 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:38:49.991 [Task submitter] INFO nextflow.Session - [54/04004c] Submitted process > POREC:digest_align_annotate (875) Aug-17 22:40:17.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 884; name: POREC:digest_align_annotate (875); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/04004c0d364e26bd6af17836e9ece0] Aug-17 22:40:17.792 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (875)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/04004c0d364e26bd6af17836e9ece0/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:40:17.793 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:40:17.834 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:40:17.834 [Task submitter] INFO nextflow.Session - [e1/77676c] Submitted process > POREC:digest_align_annotate (877) Aug-17 22:41:18.021 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 887; name: POREC:digest_align_annotate (878); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/61783d09843edbc39949c3df8cef06] ~> TaskHandler[id: 888; name: POREC:digest_align_annotate (879); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/10d62cd200578d642377dd7fb2ebd1] ~> TaskHandler[id: 889; name: POREC:digest_align_annotate (880); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/5359923a45c5f1c4ade5c000ca0e32] ~> TaskHandler[id: 890; name: POREC:digest_align_annotate (881); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/36dfd377607f7cbe72eddebdb30800] ~> TaskHandler[id: 891; name: POREC:digest_align_annotate (882); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/aa1164fb5a95c4cbb3502b6334056e] ~> TaskHandler[id: 892; name: POREC:digest_align_annotate (883); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e0961606202fabcd2b17480ea7a019] ~> TaskHandler[id: 893; name: POREC:digest_align_annotate (884); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9beee9ea840a1389ce4fc235964bf6] ~> TaskHandler[id: 894; name: POREC:digest_align_annotate (885); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/6bf5c42d1377fd9ea6ccc6bb9bf558] ~> TaskHandler[id: 895; name: POREC:digest_align_annotate (886); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/d8c4b0fdfe5427bbe9d434e72fbd9e] ~> TaskHandler[id: 896; name: POREC:digest_align_annotate (887); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fae5ee9c583cff0268f5bd56516227] .. remaining tasks omitted. Aug-17 22:41:44.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 886; name: POREC:digest_align_annotate (877); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/77676c786c1d9fe7c1eb35162f270e] Aug-17 22:41:44.051 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (877)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/77676c786c1d9fe7c1eb35162f270e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:41:44.051 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:41:44.056 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:41:44.056 [Task submitter] INFO nextflow.Session - [30/61783d] Submitted process > POREC:digest_align_annotate (878) Aug-17 22:43:10.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 887; name: POREC:digest_align_annotate (878); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/61783d09843edbc39949c3df8cef06] Aug-17 22:43:10.496 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (878)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/61783d09843edbc39949c3df8cef06/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:43:10.497 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:43:10.500 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:43:10.500 [Task submitter] INFO nextflow.Session - [92/10d62c] Submitted process > POREC:digest_align_annotate (879) Aug-17 22:43:44.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 888; name: POREC:digest_align_annotate (879); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/10d62cd200578d642377dd7fb2ebd1] Aug-17 22:44:47.048 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 888; name: POREC:digest_align_annotate (879); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/10d62cd200578d642377dd7fb2ebd1] Aug-17 22:44:47.049 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (879)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/10d62cd200578d642377dd7fb2ebd1/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:44:47.050 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:44:47.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:44:47.071 [Task submitter] INFO nextflow.Session - [00/535992] Submitted process > POREC:digest_align_annotate (880) Aug-17 22:46:17.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 889; name: POREC:digest_align_annotate (880); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/5359923a45c5f1c4ade5c000ca0e32] Aug-17 22:46:17.959 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (880)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/5359923a45c5f1c4ade5c000ca0e32/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:46:17.960 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:46:17.965 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:46:17.965 [Task submitter] INFO nextflow.Session - [82/36dfd3] Submitted process > POREC:digest_align_annotate (881) Aug-17 22:46:18.974 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 891; name: POREC:digest_align_annotate (882); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/aa1164fb5a95c4cbb3502b6334056e] ~> TaskHandler[id: 892; name: POREC:digest_align_annotate (883); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e0961606202fabcd2b17480ea7a019] ~> TaskHandler[id: 893; name: POREC:digest_align_annotate (884); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9beee9ea840a1389ce4fc235964bf6] ~> TaskHandler[id: 894; name: POREC:digest_align_annotate (885); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/6bf5c42d1377fd9ea6ccc6bb9bf558] ~> TaskHandler[id: 895; name: POREC:digest_align_annotate (886); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/d8c4b0fdfe5427bbe9d434e72fbd9e] ~> TaskHandler[id: 896; name: POREC:digest_align_annotate (887); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fae5ee9c583cff0268f5bd56516227] ~> TaskHandler[id: 897; name: POREC:digest_align_annotate (888); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/1f96bdcfd302c0814b2034146b265c] ~> TaskHandler[id: 898; name: POREC:digest_align_annotate (889); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/fa3400deaa21feff781edc52ae45fb] ~> TaskHandler[id: 899; name: POREC:digest_align_annotate (890); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/7c3914fee35932c70de5925f59f542] ~> TaskHandler[id: 900; name: POREC:digest_align_annotate (891); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d6dbdc737fa379419efc4dcfd9139c] .. remaining tasks omitted. Aug-17 22:47:41.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 890; name: POREC:digest_align_annotate (881); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/36dfd377607f7cbe72eddebdb30800] Aug-17 22:47:41.832 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (881)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/36dfd377607f7cbe72eddebdb30800/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:47:41.833 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:47:41.835 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:47:41.835 [Task submitter] INFO nextflow.Session - [5e/aa1164] Submitted process > POREC:digest_align_annotate (882) Aug-17 22:48:44.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 891; name: POREC:digest_align_annotate (882); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/aa1164fb5a95c4cbb3502b6334056e] Aug-17 22:49:25.426 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 891; name: POREC:digest_align_annotate (882); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/aa1164fb5a95c4cbb3502b6334056e] Aug-17 22:49:25.426 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (882)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/aa1164fb5a95c4cbb3502b6334056e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:49:25.427 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:49:25.432 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:49:25.432 [Task submitter] INFO nextflow.Session - [c9/e09616] Submitted process > POREC:digest_align_annotate (883) Aug-17 22:50:54.021 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 892; name: POREC:digest_align_annotate (883); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e0961606202fabcd2b17480ea7a019] Aug-17 22:50:54.022 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (883)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e0961606202fabcd2b17480ea7a019/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:50:54.022 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:50:54.027 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:50:54.027 [Task submitter] INFO nextflow.Session - [3d/9beee9] Submitted process > POREC:digest_align_annotate (884) Aug-17 22:51:19.110 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 894; name: POREC:digest_align_annotate (885); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/6bf5c42d1377fd9ea6ccc6bb9bf558] ~> TaskHandler[id: 895; name: POREC:digest_align_annotate (886); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/d8c4b0fdfe5427bbe9d434e72fbd9e] ~> TaskHandler[id: 896; name: POREC:digest_align_annotate (887); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fae5ee9c583cff0268f5bd56516227] ~> TaskHandler[id: 897; name: POREC:digest_align_annotate (888); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/1f96bdcfd302c0814b2034146b265c] ~> TaskHandler[id: 898; name: POREC:digest_align_annotate (889); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/fa3400deaa21feff781edc52ae45fb] ~> TaskHandler[id: 899; name: POREC:digest_align_annotate (890); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/7c3914fee35932c70de5925f59f542] ~> TaskHandler[id: 900; name: POREC:digest_align_annotate (891); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d6dbdc737fa379419efc4dcfd9139c] ~> TaskHandler[id: 901; name: POREC:digest_align_annotate (892); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/a4cad874f42f6fdbaa16fe2c090fb3] ~> TaskHandler[id: 902; name: POREC:digest_align_annotate (893); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/ed9a94beea0eca011a345884a0e951] ~> TaskHandler[id: 903; name: POREC:digest_align_annotate (894); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/8d39ce25d38b0ebf7975058ae279cc] .. remaining tasks omitted. Aug-17 22:52:21.992 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 893; name: POREC:digest_align_annotate (884); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9beee9ea840a1389ce4fc235964bf6] Aug-17 22:52:21.993 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (884)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9beee9ea840a1389ce4fc235964bf6/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:52:21.993 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:52:21.998 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:52:21.998 [Task submitter] INFO nextflow.Session - [18/6bf5c4] Submitted process > POREC:digest_align_annotate (885) Aug-17 22:53:44.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 894; name: POREC:digest_align_annotate (885); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/6bf5c42d1377fd9ea6ccc6bb9bf558] Aug-17 22:53:48.837 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 894; name: POREC:digest_align_annotate (885); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/6bf5c42d1377fd9ea6ccc6bb9bf558] Aug-17 22:53:48.838 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (885)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/6bf5c42d1377fd9ea6ccc6bb9bf558/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:53:48.841 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:53:48.852 [Task submitter] INFO nextflow.Session - [5d/d8c4b0] Submitted process > POREC:digest_align_annotate (886) Aug-17 22:53:48.853 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:55:16.052 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 895; name: POREC:digest_align_annotate (886); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/d8c4b0fdfe5427bbe9d434e72fbd9e] Aug-17 22:55:16.053 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (886)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/d8c4b0fdfe5427bbe9d434e72fbd9e/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:55:16.054 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:55:16.065 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:55:16.065 [Task submitter] INFO nextflow.Session - [56/fae5ee] Submitted process > POREC:digest_align_annotate (887) Aug-17 22:56:19.256 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 897; name: POREC:digest_align_annotate (888); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/1f96bdcfd302c0814b2034146b265c] ~> TaskHandler[id: 898; name: POREC:digest_align_annotate (889); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/fa3400deaa21feff781edc52ae45fb] ~> TaskHandler[id: 899; name: POREC:digest_align_annotate (890); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/7c3914fee35932c70de5925f59f542] ~> TaskHandler[id: 900; name: POREC:digest_align_annotate (891); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d6dbdc737fa379419efc4dcfd9139c] ~> TaskHandler[id: 901; name: POREC:digest_align_annotate (892); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/a4cad874f42f6fdbaa16fe2c090fb3] ~> TaskHandler[id: 902; name: POREC:digest_align_annotate (893); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/ed9a94beea0eca011a345884a0e951] ~> TaskHandler[id: 903; name: POREC:digest_align_annotate (894); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/8d39ce25d38b0ebf7975058ae279cc] ~> TaskHandler[id: 904; name: POREC:digest_align_annotate (895); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a12d39f8d6fd098cca093d55dff92f] ~> TaskHandler[id: 905; name: POREC:digest_align_annotate (896); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/42b27f00d8ea50aae1d0f3b82374b7] ~> TaskHandler[id: 907; name: POREC:digest_align_annotate (898); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/89ec2274ffd594746ab2877c856bf2] .. remaining tasks omitted. Aug-17 22:56:57.942 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 896; name: POREC:digest_align_annotate (887); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fae5ee9c583cff0268f5bd56516227] Aug-17 22:56:57.943 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (887)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fae5ee9c583cff0268f5bd56516227/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:56:57.948 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:56:57.962 [Task submitter] INFO nextflow.Session - [9f/1f96bd] Submitted process > POREC:digest_align_annotate (888) Aug-17 22:56:57.963 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:58:39.248 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 897; name: POREC:digest_align_annotate (888); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/1f96bdcfd302c0814b2034146b265c] Aug-17 22:58:39.248 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (888)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/1f96bdcfd302c0814b2034146b265c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 22:58:39.249 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 22:58:39.257 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 22:58:39.257 [Task submitter] INFO nextflow.Session - [08/fa3400] Submitted process > POREC:digest_align_annotate (889) Aug-17 22:58:44.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 898; name: POREC:digest_align_annotate (889); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/fa3400deaa21feff781edc52ae45fb] Aug-17 23:00:08.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 898; name: POREC:digest_align_annotate (889); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/fa3400deaa21feff781edc52ae45fb] Aug-17 23:00:08.794 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (889)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/fa3400deaa21feff781edc52ae45fb/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:00:08.795 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:00:08.800 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:00:08.800 [Task submitter] INFO nextflow.Session - [73/7c3914] Submitted process > POREC:digest_align_annotate (890) Aug-17 23:01:20.012 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 900; name: POREC:digest_align_annotate (891); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d6dbdc737fa379419efc4dcfd9139c] ~> TaskHandler[id: 901; name: POREC:digest_align_annotate (892); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/a4cad874f42f6fdbaa16fe2c090fb3] ~> TaskHandler[id: 902; name: POREC:digest_align_annotate (893); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/ed9a94beea0eca011a345884a0e951] ~> TaskHandler[id: 903; name: POREC:digest_align_annotate (894); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/8d39ce25d38b0ebf7975058ae279cc] ~> TaskHandler[id: 904; name: POREC:digest_align_annotate (895); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a12d39f8d6fd098cca093d55dff92f] ~> TaskHandler[id: 905; name: POREC:digest_align_annotate (896); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/42b27f00d8ea50aae1d0f3b82374b7] ~> TaskHandler[id: 907; name: POREC:digest_align_annotate (898); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/89ec2274ffd594746ab2877c856bf2] ~> TaskHandler[id: 908; name: POREC:digest_align_annotate (899); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/1808d74fdf8f2c08ad52f4f684ab11] ~> TaskHandler[id: 910; name: POREC:digest_align_annotate (901); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/80d102cac92d1659255dd48b9a9c39] ~> TaskHandler[id: 912; name: POREC:to_pairs_file (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/52fb2296a16ecc20ff238fec22b77a] .. remaining tasks omitted. Aug-17 23:01:38.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 899; name: POREC:digest_align_annotate (890); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/7c3914fee35932c70de5925f59f542] Aug-17 23:01:38.771 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (890)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/7c3914fee35932c70de5925f59f542/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:01:38.772 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:01:38.776 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:01:38.776 [Task submitter] INFO nextflow.Session - [e2/d6dbdc] Submitted process > POREC:digest_align_annotate (891) Aug-17 23:03:08.403 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 900; name: POREC:digest_align_annotate (891); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d6dbdc737fa379419efc4dcfd9139c] Aug-17 23:03:08.405 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (891)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d6dbdc737fa379419efc4dcfd9139c/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:03:08.405 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:03:08.409 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:03:08.409 [Task submitter] INFO nextflow.Session - [a3/a4cad8] Submitted process > POREC:digest_align_annotate (892) Aug-17 23:03:45.047 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 901; name: POREC:digest_align_annotate (892); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/a4cad874f42f6fdbaa16fe2c090fb3] Aug-17 23:04:38.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 901; name: POREC:digest_align_annotate (892); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/a4cad874f42f6fdbaa16fe2c090fb3] Aug-17 23:04:38.627 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (892)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/a4cad874f42f6fdbaa16fe2c090fb3/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:04:38.628 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:04:38.632 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:04:38.632 [Task submitter] INFO nextflow.Session - [68/ed9a94] Submitted process > POREC:digest_align_annotate (893) Aug-17 23:06:04.241 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 902; name: POREC:digest_align_annotate (893); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/ed9a94beea0eca011a345884a0e951] Aug-17 23:06:04.242 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (893)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/ed9a94beea0eca011a345884a0e951/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:06:04.242 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:06:04.258 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:06:04.258 [Task submitter] INFO nextflow.Session - [78/8d39ce] Submitted process > POREC:digest_align_annotate (894) Aug-17 23:06:20.314 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 904; name: POREC:digest_align_annotate (895); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a12d39f8d6fd098cca093d55dff92f] ~> TaskHandler[id: 905; name: POREC:digest_align_annotate (896); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/42b27f00d8ea50aae1d0f3b82374b7] ~> TaskHandler[id: 907; name: POREC:digest_align_annotate (898); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/89ec2274ffd594746ab2877c856bf2] ~> TaskHandler[id: 908; name: POREC:digest_align_annotate (899); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/1808d74fdf8f2c08ad52f4f684ab11] ~> TaskHandler[id: 910; name: POREC:digest_align_annotate (901); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/80d102cac92d1659255dd48b9a9c39] ~> TaskHandler[id: 912; name: POREC:to_pairs_file (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/52fb2296a16ecc20ff238fec22b77a] ~> TaskHandler[id: 913; name: POREC:to_pairs_file (2); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a92a5ebb7d5f0fed2c8126c39ff096] ~> TaskHandler[id: 914; name: POREC:to_pairs_file (3); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/0bc4a810ff76494a37dae1735e0f0c] ~> TaskHandler[id: 915; name: POREC:to_pairs_file (4); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a501377cd9dc0811a57fd084c3d352] ~> TaskHandler[id: 917; name: POREC:to_pairs_file (6); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/987537fde0dc58c872eed09d8cb540] .. remaining tasks omitted. Aug-17 23:07:50.990 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 903; name: POREC:digest_align_annotate (894); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/8d39ce25d38b0ebf7975058ae279cc] Aug-17 23:07:51.034 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (894)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/8d39ce25d38b0ebf7975058ae279cc/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:07:51.035 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:07:51.039 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:07:51.040 [Task submitter] INFO nextflow.Session - [ee/a12d39] Submitted process > POREC:digest_align_annotate (895) Aug-17 23:08:45.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 904; name: POREC:digest_align_annotate (895); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a12d39f8d6fd098cca093d55dff92f] Aug-17 23:09:32.874 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 904; name: POREC:digest_align_annotate (895); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a12d39f8d6fd098cca093d55dff92f] Aug-17 23:09:32.875 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (895)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a12d39f8d6fd098cca093d55dff92f/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:09:32.876 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:09:32.880 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:09:32.880 [Task submitter] INFO nextflow.Session - [d6/42b27f] Submitted process > POREC:digest_align_annotate (896) Aug-17 23:11:13.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 905; name: POREC:digest_align_annotate (896); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/42b27f00d8ea50aae1d0f3b82374b7] Aug-17 23:11:13.107 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (896)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/42b27f00d8ea50aae1d0f3b82374b7/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:11:13.107 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:11:13.113 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:11:13.113 [Task submitter] INFO nextflow.Session - [9f/89ec22] Submitted process > POREC:digest_align_annotate (898) Aug-17 23:11:21.143 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 899 -- tasks to be submitted are shown below ~> TaskHandler[id: 908; name: POREC:digest_align_annotate (899); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/1808d74fdf8f2c08ad52f4f684ab11] ~> TaskHandler[id: 910; name: POREC:digest_align_annotate (901); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/80d102cac92d1659255dd48b9a9c39] ~> TaskHandler[id: 912; name: POREC:to_pairs_file (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/52fb2296a16ecc20ff238fec22b77a] ~> TaskHandler[id: 913; name: POREC:to_pairs_file (2); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a92a5ebb7d5f0fed2c8126c39ff096] ~> TaskHandler[id: 914; name: POREC:to_pairs_file (3); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/0bc4a810ff76494a37dae1735e0f0c] ~> TaskHandler[id: 915; name: POREC:to_pairs_file (4); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a501377cd9dc0811a57fd084c3d352] ~> TaskHandler[id: 917; name: POREC:to_pairs_file (6); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/987537fde0dc58c872eed09d8cb540] ~> TaskHandler[id: 918; name: POREC:to_pairs_file (7); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/a10624f29a26b6589c613635863ee3] ~> TaskHandler[id: 919; name: POREC:to_pairs_file (8); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/4dbe5a3a06e78a7fa25d3c040e1324] ~> TaskHandler[id: 920; name: POREC:to_pairs_file (9); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/d87b2f8ca4552d2133c8776d39ce2b] .. remaining tasks omitted. Aug-17 23:12:44.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 907; name: POREC:digest_align_annotate (898); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/89ec2274ffd594746ab2877c856bf2] Aug-17 23:12:44.974 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (898)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/89ec2274ffd594746ab2877c856bf2/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:12:44.975 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:12:44.980 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:12:44.980 [Task submitter] INFO nextflow.Session - [84/1808d7] Submitted process > POREC:digest_align_annotate (899) Aug-17 23:13:45.143 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 908; name: POREC:digest_align_annotate (899); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/1808d74fdf8f2c08ad52f4f684ab11] Aug-17 23:14:16.383 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 908; name: POREC:digest_align_annotate (899); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/1808d74fdf8f2c08ad52f4f684ab11] Aug-17 23:14:16.384 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (899)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/1808d74fdf8f2c08ad52f4f684ab11/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:14:16.385 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:14:16.389 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:14:16.389 [Task submitter] INFO nextflow.Session - [26/80d102] Submitted process > POREC:digest_align_annotate (901) Aug-17 23:15:43.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 910; name: POREC:digest_align_annotate (901); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/80d102cac92d1659255dd48b9a9c39] Aug-17 23:15:43.807 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `POREC:digest_align_annotate (901)` is unable to find [UnixPath]: `/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/80d102cac92d1659255dd48b9a9c39/Pore-C_part1.chromunity.parquet` (pattern: `Pore-C_part1.chromunity.parquet`) Aug-17 23:15:43.808 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process POREC:digest_align_annotate > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Aug-17 23:15:43.812 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:15:43.813 [Task submitter] INFO nextflow.Session - [db/52fb22] Submitted process > POREC:to_pairs_file (1) Aug-17 23:16:22.011 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 903 -- tasks to be submitted are shown below ~> TaskHandler[id: 913; name: POREC:to_pairs_file (2); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a92a5ebb7d5f0fed2c8126c39ff096] ~> TaskHandler[id: 914; name: POREC:to_pairs_file (3); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/0bc4a810ff76494a37dae1735e0f0c] ~> TaskHandler[id: 915; name: POREC:to_pairs_file (4); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a501377cd9dc0811a57fd084c3d352] ~> TaskHandler[id: 917; name: POREC:to_pairs_file (6); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/987537fde0dc58c872eed09d8cb540] ~> TaskHandler[id: 918; name: POREC:to_pairs_file (7); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/a10624f29a26b6589c613635863ee3] ~> TaskHandler[id: 919; name: POREC:to_pairs_file (8); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/4dbe5a3a06e78a7fa25d3c040e1324] ~> TaskHandler[id: 920; name: POREC:to_pairs_file (9); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/d87b2f8ca4552d2133c8776d39ce2b] ~> TaskHandler[id: 921; name: POREC:to_pairs_file (10); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/7b490b9b2a2f89acc77af49c186746] ~> TaskHandler[id: 922; name: POREC:to_pairs_file (11); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/54185cf48bd32087061c03a0a66b2d] ~> TaskHandler[id: 923; name: POREC:to_pairs_file (12); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/af9f3ef410ca5976541433821e78f0] .. remaining tasks omitted. Aug-17 23:17:13.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 912; name: POREC:to_pairs_file (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/52fb2296a16ecc20ff238fec22b77a] Aug-17 23:17:13.819 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:17:13.819 [Task submitter] INFO nextflow.Session - [15/a92a5e] Submitted process > POREC:to_pairs_file (2) Aug-17 23:18:41.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 913; name: POREC:to_pairs_file (2); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a92a5ebb7d5f0fed2c8126c39ff096] Aug-17 23:18:41.201 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:18:41.202 [Task submitter] INFO nextflow.Session - [79/0bc4a8] Submitted process > POREC:to_pairs_file (3) Aug-17 23:18:45.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 914; name: POREC:to_pairs_file (3); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/0bc4a810ff76494a37dae1735e0f0c] Aug-17 23:20:11.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 914; name: POREC:to_pairs_file (3); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/0bc4a810ff76494a37dae1735e0f0c] Aug-17 23:20:11.449 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:20:11.449 [Task submitter] INFO nextflow.Session - [dc/a50137] Submitted process > POREC:to_pairs_file (4) Aug-17 23:21:22.675 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 900 -- tasks to be submitted are shown below ~> TaskHandler[id: 917; name: POREC:to_pairs_file (6); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/987537fde0dc58c872eed09d8cb540] ~> TaskHandler[id: 918; name: POREC:to_pairs_file (7); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/a10624f29a26b6589c613635863ee3] ~> TaskHandler[id: 919; name: POREC:to_pairs_file (8); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/4dbe5a3a06e78a7fa25d3c040e1324] ~> TaskHandler[id: 920; name: POREC:to_pairs_file (9); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/d87b2f8ca4552d2133c8776d39ce2b] ~> TaskHandler[id: 921; name: POREC:to_pairs_file (10); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/7b490b9b2a2f89acc77af49c186746] ~> TaskHandler[id: 922; name: POREC:to_pairs_file (11); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/54185cf48bd32087061c03a0a66b2d] ~> TaskHandler[id: 923; name: POREC:to_pairs_file (12); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/af9f3ef410ca5976541433821e78f0] ~> TaskHandler[id: 924; name: POREC:to_pairs_file (13); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/fc279606526e8162e6a1c60972ba63] ~> TaskHandler[id: 925; name: POREC:to_pairs_file (14); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/72306c5f71672236aaf84e436800bb] ~> TaskHandler[id: 926; name: POREC:to_pairs_file (15); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b7683fa0cb50fdaf1ba27460a0d8] .. remaining tasks omitted. Aug-17 23:21:43.049 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 915; name: POREC:to_pairs_file (4); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/a501377cd9dc0811a57fd084c3d352] Aug-17 23:21:43.055 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:21:43.055 [Task submitter] INFO nextflow.Session - [b6/987537] Submitted process > POREC:to_pairs_file (6) Aug-17 23:23:12.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 917; name: POREC:to_pairs_file (6); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/987537fde0dc58c872eed09d8cb540] Aug-17 23:23:12.439 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:23:12.439 [Task submitter] INFO nextflow.Session - [07/a10624] Submitted process > POREC:to_pairs_file (7) Aug-17 23:23:45.276 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 918; name: POREC:to_pairs_file (7); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/a10624f29a26b6589c613635863ee3] Aug-17 23:24:43.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 918; name: POREC:to_pairs_file (7); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/a10624f29a26b6589c613635863ee3] Aug-17 23:24:43.144 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:24:43.145 [Task submitter] INFO nextflow.Session - [fc/4dbe5a] Submitted process > POREC:to_pairs_file (8) Aug-17 23:26:14.708 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 919; name: POREC:to_pairs_file (8); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/4dbe5a3a06e78a7fa25d3c040e1324] Aug-17 23:26:14.715 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:26:14.715 [Task submitter] INFO nextflow.Session - [c6/d87b2f] Submitted process > POREC:to_pairs_file (9) Aug-17 23:26:22.746 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 896 -- tasks to be submitted are shown below ~> TaskHandler[id: 921; name: POREC:to_pairs_file (10); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/7b490b9b2a2f89acc77af49c186746] ~> TaskHandler[id: 922; name: POREC:to_pairs_file (11); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/54185cf48bd32087061c03a0a66b2d] ~> TaskHandler[id: 923; name: POREC:to_pairs_file (12); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/af9f3ef410ca5976541433821e78f0] ~> TaskHandler[id: 924; name: POREC:to_pairs_file (13); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/fc279606526e8162e6a1c60972ba63] ~> TaskHandler[id: 925; name: POREC:to_pairs_file (14); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/72306c5f71672236aaf84e436800bb] ~> TaskHandler[id: 926; name: POREC:to_pairs_file (15); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b7683fa0cb50fdaf1ba27460a0d8] ~> TaskHandler[id: 927; name: POREC:to_pairs_file (16); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/32dd07b32cf5a5da98cc8b33e7df5c] ~> TaskHandler[id: 928; name: POREC:to_pairs_file (17); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/aa72f89015f8a9e05b8d24e04a6035] ~> TaskHandler[id: 929; name: POREC:to_pairs_file (18); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/6dbb035088fc463b339f0f6d064b97] ~> TaskHandler[id: 930; name: POREC:to_pairs_file (19); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/17c0929d9f285d61f5ee89cd8d2ff0] .. remaining tasks omitted. Aug-17 23:27:42.860 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 920; name: POREC:to_pairs_file (9); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/d87b2f8ca4552d2133c8776d39ce2b] Aug-17 23:27:42.866 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:27:42.866 [Task submitter] INFO nextflow.Session - [c8/7b490b] Submitted process > POREC:to_pairs_file (10) Aug-17 23:28:45.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 921; name: POREC:to_pairs_file (10); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/7b490b9b2a2f89acc77af49c186746] Aug-17 23:29:18.033 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 921; name: POREC:to_pairs_file (10); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/7b490b9b2a2f89acc77af49c186746] Aug-17 23:29:18.039 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:29:18.039 [Task submitter] INFO nextflow.Session - [9d/54185c] Submitted process > POREC:to_pairs_file (11) Aug-17 23:30:46.195 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 922; name: POREC:to_pairs_file (11); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/54185cf48bd32087061c03a0a66b2d] Aug-17 23:30:46.200 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:30:46.200 [Task submitter] INFO nextflow.Session - [d0/af9f3e] Submitted process > POREC:to_pairs_file (12) Aug-17 23:31:23.324 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 893 -- tasks to be submitted are shown below ~> TaskHandler[id: 924; name: POREC:to_pairs_file (13); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/fc279606526e8162e6a1c60972ba63] ~> TaskHandler[id: 925; name: POREC:to_pairs_file (14); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/72306c5f71672236aaf84e436800bb] ~> TaskHandler[id: 926; name: POREC:to_pairs_file (15); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b7683fa0cb50fdaf1ba27460a0d8] ~> TaskHandler[id: 927; name: POREC:to_pairs_file (16); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/32dd07b32cf5a5da98cc8b33e7df5c] ~> TaskHandler[id: 928; name: POREC:to_pairs_file (17); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/aa72f89015f8a9e05b8d24e04a6035] ~> TaskHandler[id: 929; name: POREC:to_pairs_file (18); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/6dbb035088fc463b339f0f6d064b97] ~> TaskHandler[id: 930; name: POREC:to_pairs_file (19); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/17c0929d9f285d61f5ee89cd8d2ff0] ~> TaskHandler[id: 931; name: POREC:to_pairs_file (20); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/2e4737cb647521bd6723fec4d9a348] ~> TaskHandler[id: 932; name: POREC:to_pairs_file (21); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/40bb7dc74c5fc79f4c270d877b309d] ~> TaskHandler[id: 933; name: POREC:to_pairs_file (22); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/75b167f6c4ecef6b9f1d2c2e77a99a] .. remaining tasks omitted. Aug-17 23:32:16.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 923; name: POREC:to_pairs_file (12); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/af9f3ef410ca5976541433821e78f0] Aug-17 23:32:16.818 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:32:16.819 [Task submitter] INFO nextflow.Session - [3b/fc2796] Submitted process > POREC:to_pairs_file (13) Aug-17 23:33:45.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 924; name: POREC:to_pairs_file (13); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/fc279606526e8162e6a1c60972ba63] Aug-17 23:33:46.837 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 924; name: POREC:to_pairs_file (13); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/fc279606526e8162e6a1c60972ba63] Aug-17 23:33:46.843 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:33:46.844 [Task submitter] INFO nextflow.Session - [12/72306c] Submitted process > POREC:to_pairs_file (14) Aug-17 23:35:15.853 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 925; name: POREC:to_pairs_file (14); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/72306c5f71672236aaf84e436800bb] Aug-17 23:35:15.860 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:35:15.861 [Task submitter] INFO nextflow.Session - [11/13b768] Submitted process > POREC:to_pairs_file (15) Aug-17 23:36:24.078 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 890 -- tasks to be submitted are shown below ~> TaskHandler[id: 927; name: POREC:to_pairs_file (16); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/32dd07b32cf5a5da98cc8b33e7df5c] ~> TaskHandler[id: 928; name: POREC:to_pairs_file (17); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/aa72f89015f8a9e05b8d24e04a6035] ~> TaskHandler[id: 929; name: POREC:to_pairs_file (18); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/6dbb035088fc463b339f0f6d064b97] ~> TaskHandler[id: 930; name: POREC:to_pairs_file (19); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/17c0929d9f285d61f5ee89cd8d2ff0] ~> TaskHandler[id: 931; name: POREC:to_pairs_file (20); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/2e4737cb647521bd6723fec4d9a348] ~> TaskHandler[id: 932; name: POREC:to_pairs_file (21); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/40bb7dc74c5fc79f4c270d877b309d] ~> TaskHandler[id: 933; name: POREC:to_pairs_file (22); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/75b167f6c4ecef6b9f1d2c2e77a99a] ~> TaskHandler[id: 934; name: POREC:to_pairs_file (23); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/b6c1d14d186130ef93915d1c502eed] ~> TaskHandler[id: 935; name: POREC:to_pairs_file (24); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6ea61bfa926edff8a5be88464203ea] ~> TaskHandler[id: 936; name: POREC:to_pairs_file (25); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/2c90890c215387ff7bca0e2df34cf9] .. remaining tasks omitted. Aug-17 23:36:46.357 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 926; name: POREC:to_pairs_file (15); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/13b7683fa0cb50fdaf1ba27460a0d8] Aug-17 23:36:46.362 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:36:46.362 [Task submitter] INFO nextflow.Session - [93/32dd07] Submitted process > POREC:to_pairs_file (16) Aug-17 23:38:14.445 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 927; name: POREC:to_pairs_file (16); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/32dd07b32cf5a5da98cc8b33e7df5c] Aug-17 23:38:14.451 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:38:14.464 [Task submitter] INFO nextflow.Session - [f9/aa72f8] Submitted process > POREC:to_pairs_file (17) Aug-17 23:38:45.497 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 928; name: POREC:to_pairs_file (17); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/aa72f89015f8a9e05b8d24e04a6035] Aug-17 23:39:44.778 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 928; name: POREC:to_pairs_file (17); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/aa72f89015f8a9e05b8d24e04a6035] Aug-17 23:39:44.785 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:39:44.785 [Task submitter] INFO nextflow.Session - [d0/6dbb03] Submitted process > POREC:to_pairs_file (18) Aug-17 23:41:15.854 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 929; name: POREC:to_pairs_file (18); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/6dbb035088fc463b339f0f6d064b97] Aug-17 23:41:15.860 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:41:15.860 [Task submitter] INFO nextflow.Session - [39/17c092] Submitted process > POREC:to_pairs_file (19) Aug-17 23:41:24.894 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 886 -- tasks to be submitted are shown below ~> TaskHandler[id: 931; name: POREC:to_pairs_file (20); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/2e4737cb647521bd6723fec4d9a348] ~> TaskHandler[id: 932; name: POREC:to_pairs_file (21); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/40bb7dc74c5fc79f4c270d877b309d] ~> TaskHandler[id: 933; name: POREC:to_pairs_file (22); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/75b167f6c4ecef6b9f1d2c2e77a99a] ~> TaskHandler[id: 934; name: POREC:to_pairs_file (23); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/b6c1d14d186130ef93915d1c502eed] ~> TaskHandler[id: 935; name: POREC:to_pairs_file (24); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6ea61bfa926edff8a5be88464203ea] ~> TaskHandler[id: 936; name: POREC:to_pairs_file (25); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/2c90890c215387ff7bca0e2df34cf9] ~> TaskHandler[id: 937; name: POREC:to_pairs_file (26); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/b119856cba2ec08f0495d9e7b2d31c] ~> TaskHandler[id: 938; name: POREC:to_pairs_file (27); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/084d5e050611d7d1d5e183902044ca] ~> TaskHandler[id: 939; name: POREC:to_pairs_file (28); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/59d698e33f17b4417291b849418ddc] ~> TaskHandler[id: 940; name: POREC:to_pairs_file (29); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/c0c790b4ee2576ed837d09f2090b30] .. remaining tasks omitted. Aug-17 23:42:45.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 930; name: POREC:to_pairs_file (19); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/17c0929d9f285d61f5ee89cd8d2ff0] Aug-17 23:42:45.030 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:42:45.052 [Task submitter] INFO nextflow.Session - [01/2e4737] Submitted process > POREC:to_pairs_file (20) Aug-17 23:43:45.503 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 931; name: POREC:to_pairs_file (20); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/2e4737cb647521bd6723fec4d9a348] Aug-17 23:44:12.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 931; name: POREC:to_pairs_file (20); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/2e4737cb647521bd6723fec4d9a348] Aug-17 23:44:12.469 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:44:12.469 [Task submitter] INFO nextflow.Session - [b4/40bb7d] Submitted process > POREC:to_pairs_file (21) Aug-17 23:45:40.920 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 932; name: POREC:to_pairs_file (21); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/40bb7dc74c5fc79f4c270d877b309d] Aug-17 23:45:40.925 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:45:40.925 [Task submitter] INFO nextflow.Session - [46/75b167] Submitted process > POREC:to_pairs_file (22) Aug-17 23:46:25.068 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 883 -- tasks to be submitted are shown below ~> TaskHandler[id: 934; name: POREC:to_pairs_file (23); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/b6c1d14d186130ef93915d1c502eed] ~> TaskHandler[id: 935; name: POREC:to_pairs_file (24); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6ea61bfa926edff8a5be88464203ea] ~> TaskHandler[id: 936; name: POREC:to_pairs_file (25); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/2c90890c215387ff7bca0e2df34cf9] ~> TaskHandler[id: 937; name: POREC:to_pairs_file (26); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/b119856cba2ec08f0495d9e7b2d31c] ~> TaskHandler[id: 938; name: POREC:to_pairs_file (27); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/084d5e050611d7d1d5e183902044ca] ~> TaskHandler[id: 939; name: POREC:to_pairs_file (28); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/59d698e33f17b4417291b849418ddc] ~> TaskHandler[id: 940; name: POREC:to_pairs_file (29); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/c0c790b4ee2576ed837d09f2090b30] ~> TaskHandler[id: 941; name: POREC:to_pairs_file (30); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a2a03706d3591a4a0251d6e4d6a46e] ~> TaskHandler[id: 942; name: POREC:to_pairs_file (31); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/94e2d7e57b0b8f08fa1642ea790864] ~> TaskHandler[id: 943; name: POREC:to_pairs_file (32); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/92cbf82ad419354302b7f0f65da456] .. remaining tasks omitted. Aug-17 23:47:10.839 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 933; name: POREC:to_pairs_file (22); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/75b167f6c4ecef6b9f1d2c2e77a99a] Aug-17 23:47:10.846 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:47:10.847 [Task submitter] INFO nextflow.Session - [b7/b6c1d1] Submitted process > POREC:to_pairs_file (23) Aug-17 23:48:39.076 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 934; name: POREC:to_pairs_file (23); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/b6c1d14d186130ef93915d1c502eed] Aug-17 23:48:39.082 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:48:39.082 [Task submitter] INFO nextflow.Session - [2c/6ea61b] Submitted process > POREC:to_pairs_file (24) Aug-17 23:48:45.583 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 935; name: POREC:to_pairs_file (24); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6ea61bfa926edff8a5be88464203ea] Aug-17 23:50:07.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 935; name: POREC:to_pairs_file (24); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6ea61bfa926edff8a5be88464203ea] Aug-17 23:50:07.320 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:50:07.320 [Task submitter] INFO nextflow.Session - [f9/2c9089] Submitted process > POREC:to_pairs_file (25) Aug-17 23:51:25.570 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 880 -- tasks to be submitted are shown below ~> TaskHandler[id: 937; name: POREC:to_pairs_file (26); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/b119856cba2ec08f0495d9e7b2d31c] ~> TaskHandler[id: 938; name: POREC:to_pairs_file (27); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/084d5e050611d7d1d5e183902044ca] ~> TaskHandler[id: 939; name: POREC:to_pairs_file (28); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/59d698e33f17b4417291b849418ddc] ~> TaskHandler[id: 940; name: POREC:to_pairs_file (29); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/c0c790b4ee2576ed837d09f2090b30] ~> TaskHandler[id: 941; name: POREC:to_pairs_file (30); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a2a03706d3591a4a0251d6e4d6a46e] ~> TaskHandler[id: 942; name: POREC:to_pairs_file (31); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/94e2d7e57b0b8f08fa1642ea790864] ~> TaskHandler[id: 943; name: POREC:to_pairs_file (32); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/92cbf82ad419354302b7f0f65da456] ~> TaskHandler[id: 944; name: POREC:to_pairs_file (33); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/839fce5453aa9c169f7729986f912c] ~> TaskHandler[id: 945; name: POREC:to_pairs_file (34); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/cfdbd141b78779dddf3319afd9fe8c] ~> TaskHandler[id: 946; name: POREC:to_pairs_file (35); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/45ec7f22c1bc23d3cb99f5339a6466] .. remaining tasks omitted. Aug-17 23:51:35.365 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 936; name: POREC:to_pairs_file (25); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/2c90890c215387ff7bca0e2df34cf9] Aug-17 23:51:35.374 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:51:35.374 [Task submitter] INFO nextflow.Session - [eb/b11985] Submitted process > POREC:to_pairs_file (26) Aug-17 23:53:03.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 937; name: POREC:to_pairs_file (26); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/b119856cba2ec08f0495d9e7b2d31c] Aug-17 23:53:03.230 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:53:03.230 [Task submitter] INFO nextflow.Session - [88/084d5e] Submitted process > POREC:to_pairs_file (27) Aug-17 23:53:45.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 938; name: POREC:to_pairs_file (27); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/084d5e050611d7d1d5e183902044ca] Aug-17 23:54:31.235 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 938; name: POREC:to_pairs_file (27); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/084d5e050611d7d1d5e183902044ca] Aug-17 23:54:31.242 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:54:31.242 [Task submitter] INFO nextflow.Session - [00/59d698] Submitted process > POREC:to_pairs_file (28) Aug-17 23:55:59.569 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 939; name: POREC:to_pairs_file (28); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/59d698e33f17b4417291b849418ddc] Aug-17 23:55:59.575 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:55:59.576 [Task submitter] INFO nextflow.Session - [f4/c0c790] Submitted process > POREC:to_pairs_file (29) Aug-17 23:56:25.663 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 876 -- tasks to be submitted are shown below ~> TaskHandler[id: 941; name: POREC:to_pairs_file (30); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a2a03706d3591a4a0251d6e4d6a46e] ~> TaskHandler[id: 942; name: POREC:to_pairs_file (31); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/94e2d7e57b0b8f08fa1642ea790864] ~> TaskHandler[id: 943; name: POREC:to_pairs_file (32); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/92cbf82ad419354302b7f0f65da456] ~> TaskHandler[id: 944; name: POREC:to_pairs_file (33); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/839fce5453aa9c169f7729986f912c] ~> TaskHandler[id: 945; name: POREC:to_pairs_file (34); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/cfdbd141b78779dddf3319afd9fe8c] ~> TaskHandler[id: 946; name: POREC:to_pairs_file (35); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/45ec7f22c1bc23d3cb99f5339a6466] ~> TaskHandler[id: 947; name: POREC:to_pairs_file (36); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/a45fb44b588b23b8b091d98d3b91fb] ~> TaskHandler[id: 948; name: POREC:to_pairs_file (37); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/e10fad36bdbf74f29d3fa6d3223828] ~> TaskHandler[id: 949; name: POREC:to_pairs_file (38); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e167541dcccc526629b817b962745a] ~> TaskHandler[id: 950; name: POREC:to_pairs_file (39); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/a8a528a5b1d4deb8b09cd4d4a8be16] .. remaining tasks omitted. Aug-17 23:57:27.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 940; name: POREC:to_pairs_file (29); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/c0c790b4ee2576ed837d09f2090b30] Aug-17 23:57:27.320 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:57:27.320 [Task submitter] INFO nextflow.Session - [3f/a2a037] Submitted process > POREC:to_pairs_file (30) Aug-17 23:58:45.698 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 941; name: POREC:to_pairs_file (30); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a2a03706d3591a4a0251d6e4d6a46e] Aug-17 23:58:54.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 941; name: POREC:to_pairs_file (30); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a2a03706d3591a4a0251d6e4d6a46e] Aug-17 23:58:54.950 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-17 23:58:54.950 [Task submitter] INFO nextflow.Session - [2a/94e2d7] Submitted process > POREC:to_pairs_file (31) Aug-18 00:00:21.168 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 942; name: POREC:to_pairs_file (31); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/94e2d7e57b0b8f08fa1642ea790864] Aug-18 00:00:21.173 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:00:21.173 [Task submitter] INFO nextflow.Session - [74/92cbf8] Submitted process > POREC:to_pairs_file (32) Aug-18 00:01:26.449 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 873 -- tasks to be submitted are shown below ~> TaskHandler[id: 944; name: POREC:to_pairs_file (33); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/839fce5453aa9c169f7729986f912c] ~> TaskHandler[id: 945; name: POREC:to_pairs_file (34); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/cfdbd141b78779dddf3319afd9fe8c] ~> TaskHandler[id: 946; name: POREC:to_pairs_file (35); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/45ec7f22c1bc23d3cb99f5339a6466] ~> TaskHandler[id: 947; name: POREC:to_pairs_file (36); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/a45fb44b588b23b8b091d98d3b91fb] ~> TaskHandler[id: 948; name: POREC:to_pairs_file (37); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/e10fad36bdbf74f29d3fa6d3223828] ~> TaskHandler[id: 949; name: POREC:to_pairs_file (38); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e167541dcccc526629b817b962745a] ~> TaskHandler[id: 950; name: POREC:to_pairs_file (39); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/a8a528a5b1d4deb8b09cd4d4a8be16] ~> TaskHandler[id: 951; name: POREC:to_pairs_file (40); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2e0e4f8a5dd47568c658a39c708aad] ~> TaskHandler[id: 952; name: POREC:to_pairs_file (41); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/891d0ecad3232e314fcafc163fb76e] ~> TaskHandler[id: 953; name: POREC:to_pairs_file (42); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/5301670ab5d1d4b2d39990518a3591] .. remaining tasks omitted. Aug-18 00:01:48.623 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 943; name: POREC:to_pairs_file (32); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/92cbf82ad419354302b7f0f65da456] Aug-18 00:01:48.632 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:01:48.633 [Task submitter] INFO nextflow.Session - [1f/839fce] Submitted process > POREC:to_pairs_file (33) Aug-18 00:03:16.832 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 944; name: POREC:to_pairs_file (33); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/839fce5453aa9c169f7729986f912c] Aug-18 00:03:16.838 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:03:16.838 [Task submitter] INFO nextflow.Session - [d9/cfdbd1] Submitted process > POREC:to_pairs_file (34) Aug-18 00:03:45.767 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 945; name: POREC:to_pairs_file (34); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/cfdbd141b78779dddf3319afd9fe8c] Aug-18 00:04:44.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 945; name: POREC:to_pairs_file (34); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/cfdbd141b78779dddf3319afd9fe8c] Aug-18 00:04:44.599 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:04:44.599 [Task submitter] INFO nextflow.Session - [c4/45ec7f] Submitted process > POREC:to_pairs_file (35) Aug-18 00:06:13.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 946; name: POREC:to_pairs_file (35); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/45ec7f22c1bc23d3cb99f5339a6466] Aug-18 00:06:14.005 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:06:14.005 [Task submitter] INFO nextflow.Session - [34/a45fb4] Submitted process > POREC:to_pairs_file (36) Aug-18 00:06:27.058 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 869 -- tasks to be submitted are shown below ~> TaskHandler[id: 948; name: POREC:to_pairs_file (37); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/e10fad36bdbf74f29d3fa6d3223828] ~> TaskHandler[id: 949; name: POREC:to_pairs_file (38); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e167541dcccc526629b817b962745a] ~> TaskHandler[id: 950; name: POREC:to_pairs_file (39); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/a8a528a5b1d4deb8b09cd4d4a8be16] ~> TaskHandler[id: 951; name: POREC:to_pairs_file (40); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2e0e4f8a5dd47568c658a39c708aad] ~> TaskHandler[id: 952; name: POREC:to_pairs_file (41); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/891d0ecad3232e314fcafc163fb76e] ~> TaskHandler[id: 953; name: POREC:to_pairs_file (42); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/5301670ab5d1d4b2d39990518a3591] ~> TaskHandler[id: 954; name: POREC:to_pairs_file (43); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/2a9a6e185860376cd5b029af51d3e4] ~> TaskHandler[id: 955; name: POREC:to_pairs_file (44); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d89c9658c08f56fb3f630376d52d54] ~> TaskHandler[id: 956; name: POREC:to_pairs_file (45); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/9d5e44bb8ad91943b873cbde9db33d] ~> TaskHandler[id: 957; name: POREC:to_pairs_file (46); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/3b520c78ee1505f24587c8cfb86ce3] .. remaining tasks omitted. Aug-18 00:07:40.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 947; name: POREC:to_pairs_file (36); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/a45fb44b588b23b8b091d98d3b91fb] Aug-18 00:07:40.334 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:07:40.335 [Task submitter] INFO nextflow.Session - [9c/e10fad] Submitted process > POREC:to_pairs_file (37) Aug-18 00:08:45.797 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 948; name: POREC:to_pairs_file (37); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/e10fad36bdbf74f29d3fa6d3223828] Aug-18 00:09:07.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 948; name: POREC:to_pairs_file (37); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/e10fad36bdbf74f29d3fa6d3223828] Aug-18 00:09:07.790 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:09:07.790 [Task submitter] INFO nextflow.Session - [c9/e16754] Submitted process > POREC:to_pairs_file (38) Aug-18 00:10:36.894 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 949; name: POREC:to_pairs_file (38); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/e167541dcccc526629b817b962745a] Aug-18 00:10:36.902 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:10:36.903 [Task submitter] INFO nextflow.Session - [4b/a8a528] Submitted process > POREC:to_pairs_file (39) Aug-18 00:11:28.063 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 866 -- tasks to be submitted are shown below ~> TaskHandler[id: 951; name: POREC:to_pairs_file (40); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2e0e4f8a5dd47568c658a39c708aad] ~> TaskHandler[id: 952; name: POREC:to_pairs_file (41); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/891d0ecad3232e314fcafc163fb76e] ~> TaskHandler[id: 953; name: POREC:to_pairs_file (42); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/5301670ab5d1d4b2d39990518a3591] ~> TaskHandler[id: 954; name: POREC:to_pairs_file (43); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/2a9a6e185860376cd5b029af51d3e4] ~> TaskHandler[id: 955; name: POREC:to_pairs_file (44); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d89c9658c08f56fb3f630376d52d54] ~> TaskHandler[id: 956; name: POREC:to_pairs_file (45); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/9d5e44bb8ad91943b873cbde9db33d] ~> TaskHandler[id: 957; name: POREC:to_pairs_file (46); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/3b520c78ee1505f24587c8cfb86ce3] ~> TaskHandler[id: 958; name: POREC:to_pairs_file (47); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/828a98ee87b7a4a56462309b7df99c] ~> TaskHandler[id: 959; name: POREC:to_pairs_file (48); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/ff0868ecd65e81af697861f73aa130] ~> TaskHandler[id: 960; name: POREC:to_pairs_file (49); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/44759c1112a515f5a9fef17f363873] .. remaining tasks omitted. Aug-18 00:12:04.257 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 950; name: POREC:to_pairs_file (39); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/a8a528a5b1d4deb8b09cd4d4a8be16] Aug-18 00:12:04.263 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:12:04.263 [Task submitter] INFO nextflow.Session - [0b/2e0e4f] Submitted process > POREC:to_pairs_file (40) Aug-18 00:13:33.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 951; name: POREC:to_pairs_file (40); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/2e0e4f8a5dd47568c658a39c708aad] Aug-18 00:13:33.110 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:13:33.110 [Task submitter] INFO nextflow.Session - [f7/891d0e] Submitted process > POREC:to_pairs_file (41) Aug-18 00:13:45.814 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 952; name: POREC:to_pairs_file (41); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/891d0ecad3232e314fcafc163fb76e] Aug-18 00:15:00.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 952; name: POREC:to_pairs_file (41); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/891d0ecad3232e314fcafc163fb76e] Aug-18 00:15:00.185 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:15:00.185 [Task submitter] INFO nextflow.Session - [81/530167] Submitted process > POREC:to_pairs_file (42) Aug-18 00:16:27.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 953; name: POREC:to_pairs_file (42); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/5301670ab5d1d4b2d39990518a3591] Aug-18 00:16:27.508 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:16:27.508 [Task submitter] INFO nextflow.Session - [e2/2a9a6e] Submitted process > POREC:to_pairs_file (43) Aug-18 00:16:28.517 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 862 -- tasks to be submitted are shown below ~> TaskHandler[id: 955; name: POREC:to_pairs_file (44); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d89c9658c08f56fb3f630376d52d54] ~> TaskHandler[id: 956; name: POREC:to_pairs_file (45); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/9d5e44bb8ad91943b873cbde9db33d] ~> TaskHandler[id: 957; name: POREC:to_pairs_file (46); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/3b520c78ee1505f24587c8cfb86ce3] ~> TaskHandler[id: 958; name: POREC:to_pairs_file (47); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/828a98ee87b7a4a56462309b7df99c] ~> TaskHandler[id: 959; name: POREC:to_pairs_file (48); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/ff0868ecd65e81af697861f73aa130] ~> TaskHandler[id: 960; name: POREC:to_pairs_file (49); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/44759c1112a515f5a9fef17f363873] ~> TaskHandler[id: 961; name: POREC:to_pairs_file (50); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/53c7fcbeb99d048bb8d09129943efb] ~> TaskHandler[id: 962; name: POREC:to_pairs_file (51); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/de8cdac0ba03daf19bf6c0f6e973b7] ~> TaskHandler[id: 963; name: POREC:to_pairs_file (52); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/be11d4504e663328398436779de2a6] ~> TaskHandler[id: 964; name: POREC:to_pairs_file (53); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/cc8d804b46b3dca62e233116e88d22] .. remaining tasks omitted. Aug-18 00:17:55.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 954; name: POREC:to_pairs_file (43); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/2a9a6e185860376cd5b029af51d3e4] Aug-18 00:17:55.342 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:17:55.343 [Task submitter] INFO nextflow.Session - [9c/d89c96] Submitted process > POREC:to_pairs_file (44) Aug-18 00:18:45.892 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 955; name: POREC:to_pairs_file (44); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d89c9658c08f56fb3f630376d52d54] Aug-18 00:19:24.703 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 955; name: POREC:to_pairs_file (44); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d89c9658c08f56fb3f630376d52d54] Aug-18 00:19:24.713 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:19:24.713 [Task submitter] INFO nextflow.Session - [bd/9d5e44] Submitted process > POREC:to_pairs_file (45) Aug-18 00:20:51.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 956; name: POREC:to_pairs_file (45); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/9d5e44bb8ad91943b873cbde9db33d] Aug-18 00:20:51.977 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:20:51.977 [Task submitter] INFO nextflow.Session - [c8/3b520c] Submitted process > POREC:to_pairs_file (46) Aug-18 00:21:29.096 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 859 -- tasks to be submitted are shown below ~> TaskHandler[id: 958; name: POREC:to_pairs_file (47); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/828a98ee87b7a4a56462309b7df99c] ~> TaskHandler[id: 959; name: POREC:to_pairs_file (48); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/ff0868ecd65e81af697861f73aa130] ~> TaskHandler[id: 960; name: POREC:to_pairs_file (49); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/44759c1112a515f5a9fef17f363873] ~> TaskHandler[id: 961; name: POREC:to_pairs_file (50); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/53c7fcbeb99d048bb8d09129943efb] ~> TaskHandler[id: 962; name: POREC:to_pairs_file (51); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/de8cdac0ba03daf19bf6c0f6e973b7] ~> TaskHandler[id: 963; name: POREC:to_pairs_file (52); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/be11d4504e663328398436779de2a6] ~> TaskHandler[id: 964; name: POREC:to_pairs_file (53); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/cc8d804b46b3dca62e233116e88d22] ~> TaskHandler[id: 965; name: POREC:to_pairs_file (54); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/ec710813bd6564e012a6ff0b5a79a2] ~> TaskHandler[id: 966; name: POREC:to_pairs_file (55); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/f8e083aac2327260df2cc6001bfeac] ~> TaskHandler[id: 967; name: POREC:to_pairs_file (56); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/e00a98b679d75d3956c575fa6bd4fa] .. remaining tasks omitted. Aug-18 00:22:22.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 957; name: POREC:to_pairs_file (46); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/3b520c78ee1505f24587c8cfb86ce3] Aug-18 00:22:22.619 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:22:22.620 [Task submitter] INFO nextflow.Session - [86/828a98] Submitted process > POREC:to_pairs_file (47) Aug-18 00:23:45.923 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 958; name: POREC:to_pairs_file (47); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/828a98ee87b7a4a56462309b7df99c] Aug-18 00:23:50.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 958; name: POREC:to_pairs_file (47); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/828a98ee87b7a4a56462309b7df99c] Aug-18 00:23:50.593 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:23:50.593 [Task submitter] INFO nextflow.Session - [84/ff0868] Submitted process > POREC:to_pairs_file (48) Aug-18 00:25:21.409 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 959; name: POREC:to_pairs_file (48); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/ff0868ecd65e81af697861f73aa130] Aug-18 00:25:21.418 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:25:21.418 [Task submitter] INFO nextflow.Session - [90/44759c] Submitted process > POREC:to_pairs_file (49) Aug-18 00:26:29.631 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 856 -- tasks to be submitted are shown below ~> TaskHandler[id: 961; name: POREC:to_pairs_file (50); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/53c7fcbeb99d048bb8d09129943efb] ~> TaskHandler[id: 962; name: POREC:to_pairs_file (51); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/de8cdac0ba03daf19bf6c0f6e973b7] ~> TaskHandler[id: 963; name: POREC:to_pairs_file (52); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/be11d4504e663328398436779de2a6] ~> TaskHandler[id: 964; name: POREC:to_pairs_file (53); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/cc8d804b46b3dca62e233116e88d22] ~> TaskHandler[id: 965; name: POREC:to_pairs_file (54); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/ec710813bd6564e012a6ff0b5a79a2] ~> TaskHandler[id: 966; name: POREC:to_pairs_file (55); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/f8e083aac2327260df2cc6001bfeac] ~> TaskHandler[id: 967; name: POREC:to_pairs_file (56); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/e00a98b679d75d3956c575fa6bd4fa] ~> TaskHandler[id: 968; name: POREC:to_pairs_file (57); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/4e82f1b0d57c691fad3e8d9c5fb572] ~> TaskHandler[id: 969; name: POREC:to_pairs_file (58); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c84c41b92a6e970502a373621e4109] ~> TaskHandler[id: 970; name: POREC:to_pairs_file (59); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/3d0e54496f7745e8f48b9ccefe5739] .. remaining tasks omitted. Aug-18 00:26:48.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 960; name: POREC:to_pairs_file (49); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/44759c1112a515f5a9fef17f363873] Aug-18 00:26:48.891 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:26:48.891 [Task submitter] INFO nextflow.Session - [d6/53c7fc] Submitted process > POREC:to_pairs_file (50) Aug-18 00:28:17.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 961; name: POREC:to_pairs_file (50); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/53c7fcbeb99d048bb8d09129943efb] Aug-18 00:28:17.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:28:17.871 [Task submitter] INFO nextflow.Session - [19/de8cda] Submitted process > POREC:to_pairs_file (51) Aug-18 00:28:46.002 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 962; name: POREC:to_pairs_file (51); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/de8cdac0ba03daf19bf6c0f6e973b7] Aug-18 00:29:47.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 962; name: POREC:to_pairs_file (51); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/de8cdac0ba03daf19bf6c0f6e973b7] Aug-18 00:29:47.716 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:29:47.716 [Task submitter] INFO nextflow.Session - [df/be11d4] Submitted process > POREC:to_pairs_file (52) Aug-18 00:31:14.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 963; name: POREC:to_pairs_file (52); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/be11d4504e663328398436779de2a6] Aug-18 00:31:14.076 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:31:14.076 [Task submitter] INFO nextflow.Session - [cf/cc8d80] Submitted process > POREC:to_pairs_file (53) Aug-18 00:31:30.137 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 852 -- tasks to be submitted are shown below ~> TaskHandler[id: 965; name: POREC:to_pairs_file (54); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/ec710813bd6564e012a6ff0b5a79a2] ~> TaskHandler[id: 966; name: POREC:to_pairs_file (55); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/f8e083aac2327260df2cc6001bfeac] ~> TaskHandler[id: 967; name: POREC:to_pairs_file (56); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/e00a98b679d75d3956c575fa6bd4fa] ~> TaskHandler[id: 968; name: POREC:to_pairs_file (57); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/4e82f1b0d57c691fad3e8d9c5fb572] ~> TaskHandler[id: 969; name: POREC:to_pairs_file (58); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c84c41b92a6e970502a373621e4109] ~> TaskHandler[id: 970; name: POREC:to_pairs_file (59); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/3d0e54496f7745e8f48b9ccefe5739] ~> TaskHandler[id: 971; name: POREC:to_pairs_file (60); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1434ef78294b91de861e94f6cf0cd6] ~> TaskHandler[id: 972; name: POREC:to_pairs_file (61); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/b33534e6f10a7a53036bc1d8adf83e] ~> TaskHandler[id: 973; name: POREC:to_pairs_file (62); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/06eebb71d6075a7a8d75884f4803eb] ~> TaskHandler[id: 974; name: POREC:to_pairs_file (63); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/9d231c26ba3b6b773d16072f554c0e] .. remaining tasks omitted. Aug-18 00:32:41.111 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 964; name: POREC:to_pairs_file (53); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/cc8d804b46b3dca62e233116e88d22] Aug-18 00:32:41.117 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:32:41.118 [Task submitter] INFO nextflow.Session - [36/ec7108] Submitted process > POREC:to_pairs_file (54) Aug-18 00:33:46.082 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 965; name: POREC:to_pairs_file (54); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/ec710813bd6564e012a6ff0b5a79a2] Aug-18 00:34:08.763 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 965; name: POREC:to_pairs_file (54); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/ec710813bd6564e012a6ff0b5a79a2] Aug-18 00:34:08.773 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:34:08.773 [Task submitter] INFO nextflow.Session - [88/f8e083] Submitted process > POREC:to_pairs_file (55) Aug-18 00:35:36.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 966; name: POREC:to_pairs_file (55); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/f8e083aac2327260df2cc6001bfeac] Aug-18 00:35:36.860 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:35:36.860 [Task submitter] INFO nextflow.Session - [0f/e00a98] Submitted process > POREC:to_pairs_file (56) Aug-18 00:36:31.058 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 849 -- tasks to be submitted are shown below ~> TaskHandler[id: 968; name: POREC:to_pairs_file (57); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/4e82f1b0d57c691fad3e8d9c5fb572] ~> TaskHandler[id: 969; name: POREC:to_pairs_file (58); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c84c41b92a6e970502a373621e4109] ~> TaskHandler[id: 970; name: POREC:to_pairs_file (59); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/3d0e54496f7745e8f48b9ccefe5739] ~> TaskHandler[id: 971; name: POREC:to_pairs_file (60); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1434ef78294b91de861e94f6cf0cd6] ~> TaskHandler[id: 972; name: POREC:to_pairs_file (61); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/b33534e6f10a7a53036bc1d8adf83e] ~> TaskHandler[id: 973; name: POREC:to_pairs_file (62); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/06eebb71d6075a7a8d75884f4803eb] ~> TaskHandler[id: 974; name: POREC:to_pairs_file (63); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/9d231c26ba3b6b773d16072f554c0e] ~> TaskHandler[id: 975; name: POREC:to_pairs_file (64); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/672bb1a96512b5a537bff7fc2e6b31] ~> TaskHandler[id: 976; name: POREC:to_pairs_file (65); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/e67bbc2737bf5124200f1fb55e436b] ~> TaskHandler[id: 977; name: POREC:to_pairs_file (66); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9a48014bb3c2a5c23c993b1814cd33] .. remaining tasks omitted. Aug-18 00:37:04.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 967; name: POREC:to_pairs_file (56); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/e00a98b679d75d3956c575fa6bd4fa] Aug-18 00:37:04.723 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:37:04.723 [Task submitter] INFO nextflow.Session - [7a/4e82f1] Submitted process > POREC:to_pairs_file (57) Aug-18 00:38:31.586 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 968; name: POREC:to_pairs_file (57); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/4e82f1b0d57c691fad3e8d9c5fb572] Aug-18 00:38:31.594 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:38:31.594 [Task submitter] INFO nextflow.Session - [9d/c84c41] Submitted process > POREC:to_pairs_file (58) Aug-18 00:38:46.101 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 969; name: POREC:to_pairs_file (58); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c84c41b92a6e970502a373621e4109] Aug-18 00:39:58.539 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 969; name: POREC:to_pairs_file (58); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c84c41b92a6e970502a373621e4109] Aug-18 00:39:58.549 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:39:58.549 [Task submitter] INFO nextflow.Session - [60/3d0e54] Submitted process > POREC:to_pairs_file (59) Aug-18 00:41:26.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 970; name: POREC:to_pairs_file (59); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/3d0e54496f7745e8f48b9ccefe5739] Aug-18 00:41:26.274 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:41:26.275 [Task submitter] INFO nextflow.Session - [b7/1434ef] Submitted process > POREC:to_pairs_file (60) Aug-18 00:41:31.296 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 845 -- tasks to be submitted are shown below ~> TaskHandler[id: 972; name: POREC:to_pairs_file (61); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/b33534e6f10a7a53036bc1d8adf83e] ~> TaskHandler[id: 973; name: POREC:to_pairs_file (62); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/06eebb71d6075a7a8d75884f4803eb] ~> TaskHandler[id: 974; name: POREC:to_pairs_file (63); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/9d231c26ba3b6b773d16072f554c0e] ~> TaskHandler[id: 975; name: POREC:to_pairs_file (64); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/672bb1a96512b5a537bff7fc2e6b31] ~> TaskHandler[id: 976; name: POREC:to_pairs_file (65); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/e67bbc2737bf5124200f1fb55e436b] ~> TaskHandler[id: 977; name: POREC:to_pairs_file (66); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9a48014bb3c2a5c23c993b1814cd33] ~> TaskHandler[id: 978; name: POREC:to_pairs_file (67); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/42ab4e7f7e70777fa08c9c7cc16d44] ~> TaskHandler[id: 979; name: POREC:to_pairs_file (68); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/f7fb9cf745cdcf86d1b4a732f955eb] ~> TaskHandler[id: 980; name: POREC:to_pairs_file (69); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/8f08dc2fd2e62ca4a18577528d8d22] ~> TaskHandler[id: 981; name: POREC:to_pairs_file (70); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/63e6ee3289f747ea96e5d21c2f3caa] .. remaining tasks omitted. Aug-18 00:42:52.719 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 971; name: POREC:to_pairs_file (60); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/1434ef78294b91de861e94f6cf0cd6] Aug-18 00:42:52.729 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:42:52.730 [Task submitter] INFO nextflow.Session - [68/b33534] Submitted process > POREC:to_pairs_file (61) Aug-18 00:43:46.191 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 972; name: POREC:to_pairs_file (61); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/b33534e6f10a7a53036bc1d8adf83e] Aug-18 00:44:20.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 972; name: POREC:to_pairs_file (61); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/b33534e6f10a7a53036bc1d8adf83e] Aug-18 00:44:20.729 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:44:20.729 [Task submitter] INFO nextflow.Session - [55/06eebb] Submitted process > POREC:to_pairs_file (62) Aug-18 00:45:48.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 973; name: POREC:to_pairs_file (62); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/06eebb71d6075a7a8d75884f4803eb] Aug-18 00:45:48.803 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:45:48.804 [Task submitter] INFO nextflow.Session - [d9/9d231c] Submitted process > POREC:to_pairs_file (63) Aug-18 00:46:31.956 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 842 -- tasks to be submitted are shown below ~> TaskHandler[id: 975; name: POREC:to_pairs_file (64); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/672bb1a96512b5a537bff7fc2e6b31] ~> TaskHandler[id: 976; name: POREC:to_pairs_file (65); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/e67bbc2737bf5124200f1fb55e436b] ~> TaskHandler[id: 977; name: POREC:to_pairs_file (66); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9a48014bb3c2a5c23c993b1814cd33] ~> TaskHandler[id: 978; name: POREC:to_pairs_file (67); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/42ab4e7f7e70777fa08c9c7cc16d44] ~> TaskHandler[id: 979; name: POREC:to_pairs_file (68); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/f7fb9cf745cdcf86d1b4a732f955eb] ~> TaskHandler[id: 980; name: POREC:to_pairs_file (69); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/8f08dc2fd2e62ca4a18577528d8d22] ~> TaskHandler[id: 981; name: POREC:to_pairs_file (70); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/63e6ee3289f747ea96e5d21c2f3caa] ~> TaskHandler[id: 982; name: POREC:to_pairs_file (71); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/26181cec783f3130c4e713c8de870d] ~> TaskHandler[id: 983; name: POREC:to_pairs_file (72); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/4c26147f6aed0b0a137a1155cbaf2f] ~> TaskHandler[id: 984; name: POREC:to_pairs_file (73); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/928332427fafaf186d66790316c28c] .. remaining tasks omitted. Aug-18 00:47:15.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 974; name: POREC:to_pairs_file (63); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d9/9d231c26ba3b6b773d16072f554c0e] Aug-18 00:47:15.643 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:47:15.643 [Task submitter] INFO nextflow.Session - [8e/672bb1] Submitted process > POREC:to_pairs_file (64) Aug-18 00:48:42.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 975; name: POREC:to_pairs_file (64); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/672bb1a96512b5a537bff7fc2e6b31] Aug-18 00:48:42.852 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:48:42.852 [Task submitter] INFO nextflow.Session - [c7/e67bbc] Submitted process > POREC:to_pairs_file (65) Aug-18 00:48:46.247 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 976; name: POREC:to_pairs_file (65); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/e67bbc2737bf5124200f1fb55e436b] Aug-18 00:50:09.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 976; name: POREC:to_pairs_file (65); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/e67bbc2737bf5124200f1fb55e436b] Aug-18 00:50:09.325 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:50:09.325 [Task submitter] INFO nextflow.Session - [35/9a4801] Submitted process > POREC:to_pairs_file (66) Aug-18 00:51:32.585 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 839 -- tasks to be submitted are shown below ~> TaskHandler[id: 978; name: POREC:to_pairs_file (67); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/42ab4e7f7e70777fa08c9c7cc16d44] ~> TaskHandler[id: 979; name: POREC:to_pairs_file (68); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/f7fb9cf745cdcf86d1b4a732f955eb] ~> TaskHandler[id: 980; name: POREC:to_pairs_file (69); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/8f08dc2fd2e62ca4a18577528d8d22] ~> TaskHandler[id: 981; name: POREC:to_pairs_file (70); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/63e6ee3289f747ea96e5d21c2f3caa] ~> TaskHandler[id: 982; name: POREC:to_pairs_file (71); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/26181cec783f3130c4e713c8de870d] ~> TaskHandler[id: 983; name: POREC:to_pairs_file (72); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/4c26147f6aed0b0a137a1155cbaf2f] ~> TaskHandler[id: 984; name: POREC:to_pairs_file (73); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/928332427fafaf186d66790316c28c] ~> TaskHandler[id: 985; name: POREC:to_pairs_file (74); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/d61842d84b8e35ed459f673740f2b0] ~> TaskHandler[id: 986; name: POREC:to_pairs_file (75); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/d5c8dc05e4bf2706cd41aa9a0668f6] ~> TaskHandler[id: 987; name: POREC:to_pairs_file (76); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/72cf8bc3fd5ad50360f025fc483730] .. remaining tasks omitted. Aug-18 00:51:35.715 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 977; name: POREC:to_pairs_file (66); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/9a48014bb3c2a5c23c993b1814cd33] Aug-18 00:51:35.725 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:51:35.726 [Task submitter] INFO nextflow.Session - [b7/42ab4e] Submitted process > POREC:to_pairs_file (67) Aug-18 00:53:03.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 978; name: POREC:to_pairs_file (67); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/42ab4e7f7e70777fa08c9c7cc16d44] Aug-18 00:53:03.778 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:53:03.778 [Task submitter] INFO nextflow.Session - [5b/f7fb9c] Submitted process > POREC:to_pairs_file (68) Aug-18 00:53:46.319 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 979; name: POREC:to_pairs_file (68); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/f7fb9cf745cdcf86d1b4a732f955eb] Aug-18 00:54:31.782 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 979; name: POREC:to_pairs_file (68); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/f7fb9cf745cdcf86d1b4a732f955eb] Aug-18 00:54:31.794 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:54:31.797 [Task submitter] INFO nextflow.Session - [b4/8f08dc] Submitted process > POREC:to_pairs_file (69) Aug-18 00:55:59.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 980; name: POREC:to_pairs_file (69); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/8f08dc2fd2e62ca4a18577528d8d22] Aug-18 00:55:59.589 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:55:59.589 [Task submitter] INFO nextflow.Session - [a6/63e6ee] Submitted process > POREC:to_pairs_file (70) Aug-18 00:56:32.695 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 835 -- tasks to be submitted are shown below ~> TaskHandler[id: 982; name: POREC:to_pairs_file (71); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/26181cec783f3130c4e713c8de870d] ~> TaskHandler[id: 983; name: POREC:to_pairs_file (72); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/4c26147f6aed0b0a137a1155cbaf2f] ~> TaskHandler[id: 984; name: POREC:to_pairs_file (73); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/928332427fafaf186d66790316c28c] ~> TaskHandler[id: 985; name: POREC:to_pairs_file (74); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/d61842d84b8e35ed459f673740f2b0] ~> TaskHandler[id: 986; name: POREC:to_pairs_file (75); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/d5c8dc05e4bf2706cd41aa9a0668f6] ~> TaskHandler[id: 987; name: POREC:to_pairs_file (76); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/72cf8bc3fd5ad50360f025fc483730] ~> TaskHandler[id: 988; name: POREC:to_pairs_file (77); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/85987d69f245dc3673a20c55fbc276] ~> TaskHandler[id: 989; name: POREC:to_pairs_file (78); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/bb08ec27a8d239eb91bba56eeb90ce] ~> TaskHandler[id: 990; name: POREC:to_pairs_file (79); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fc2747b6415c8e1e79f2875d8a5d09] ~> TaskHandler[id: 991; name: POREC:to_pairs_file (80); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/2334b065b0ce2a212998b505ed1ffb] .. remaining tasks omitted. Aug-18 00:57:29.369 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 981; name: POREC:to_pairs_file (70); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/63e6ee3289f747ea96e5d21c2f3caa] Aug-18 00:57:29.392 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:57:29.392 [Task submitter] INFO nextflow.Session - [bc/26181c] Submitted process > POREC:to_pairs_file (71) Aug-18 00:58:46.371 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 982; name: POREC:to_pairs_file (71); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/26181cec783f3130c4e713c8de870d] Aug-18 00:58:58.722 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 982; name: POREC:to_pairs_file (71); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/26181cec783f3130c4e713c8de870d] Aug-18 00:58:58.729 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 00:58:58.729 [Task submitter] INFO nextflow.Session - [00/4c2614] Submitted process > POREC:to_pairs_file (72) Aug-18 01:00:27.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 983; name: POREC:to_pairs_file (72); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/4c26147f6aed0b0a137a1155cbaf2f] Aug-18 01:00:27.932 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:00:27.932 [Task submitter] INFO nextflow.Session - [6d/928332] Submitted process > POREC:to_pairs_file (73) Aug-18 01:01:33.134 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 832 -- tasks to be submitted are shown below ~> TaskHandler[id: 985; name: POREC:to_pairs_file (74); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/d61842d84b8e35ed459f673740f2b0] ~> TaskHandler[id: 986; name: POREC:to_pairs_file (75); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/d5c8dc05e4bf2706cd41aa9a0668f6] ~> TaskHandler[id: 987; name: POREC:to_pairs_file (76); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/72cf8bc3fd5ad50360f025fc483730] ~> TaskHandler[id: 988; name: POREC:to_pairs_file (77); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/85987d69f245dc3673a20c55fbc276] ~> TaskHandler[id: 989; name: POREC:to_pairs_file (78); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/bb08ec27a8d239eb91bba56eeb90ce] ~> TaskHandler[id: 990; name: POREC:to_pairs_file (79); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fc2747b6415c8e1e79f2875d8a5d09] ~> TaskHandler[id: 991; name: POREC:to_pairs_file (80); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/2334b065b0ce2a212998b505ed1ffb] ~> TaskHandler[id: 992; name: POREC:to_pairs_file (81); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a3f3912fe99d0cff92a71a179342f1] ~> TaskHandler[id: 993; name: POREC:to_pairs_file (82); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ea2b6a5a86561c1316080b49c24943] ~> TaskHandler[id: 994; name: POREC:to_pairs_file (83); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d24b412409323bfcc134d7b18d7bc7] .. remaining tasks omitted. Aug-18 01:01:56.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 984; name: POREC:to_pairs_file (73); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/928332427fafaf186d66790316c28c] Aug-18 01:01:56.370 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:01:56.370 [Task submitter] INFO nextflow.Session - [98/d61842] Submitted process > POREC:to_pairs_file (74) Aug-18 01:03:24.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 985; name: POREC:to_pairs_file (74); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/d61842d84b8e35ed459f673740f2b0] Aug-18 01:03:24.168 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:03:24.168 [Task submitter] INFO nextflow.Session - [5e/d5c8dc] Submitted process > POREC:to_pairs_file (75) Aug-18 01:03:46.385 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 986; name: POREC:to_pairs_file (75); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/d5c8dc05e4bf2706cd41aa9a0668f6] Aug-18 01:04:54.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 986; name: POREC:to_pairs_file (75); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/d5c8dc05e4bf2706cd41aa9a0668f6] Aug-18 01:04:54.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:04:54.222 [Task submitter] INFO nextflow.Session - [a0/72cf8b] Submitted process > POREC:to_pairs_file (76) Aug-18 01:06:22.251 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 987; name: POREC:to_pairs_file (76); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/72cf8bc3fd5ad50360f025fc483730] Aug-18 01:06:22.260 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:06:22.260 [Task submitter] INFO nextflow.Session - [dd/85987d] Submitted process > POREC:to_pairs_file (77) Aug-18 01:06:33.296 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 828 -- tasks to be submitted are shown below ~> TaskHandler[id: 989; name: POREC:to_pairs_file (78); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/bb08ec27a8d239eb91bba56eeb90ce] ~> TaskHandler[id: 990; name: POREC:to_pairs_file (79); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fc2747b6415c8e1e79f2875d8a5d09] ~> TaskHandler[id: 991; name: POREC:to_pairs_file (80); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/2334b065b0ce2a212998b505ed1ffb] ~> TaskHandler[id: 992; name: POREC:to_pairs_file (81); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a3f3912fe99d0cff92a71a179342f1] ~> TaskHandler[id: 993; name: POREC:to_pairs_file (82); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ea2b6a5a86561c1316080b49c24943] ~> TaskHandler[id: 994; name: POREC:to_pairs_file (83); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d24b412409323bfcc134d7b18d7bc7] ~> TaskHandler[id: 995; name: POREC:to_pairs_file (84); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/c7fa093e4de752f596dc08c405f2fc] ~> TaskHandler[id: 996; name: POREC:to_pairs_file (85); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/aba0082c2a145298c9a0c75fd673e9] ~> TaskHandler[id: 997; name: POREC:to_pairs_file (86); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1fe4b5ee1d3360ce123259304c450a] ~> TaskHandler[id: 998; name: POREC:to_pairs_file (87); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/246f6f69a9558b39818b3f0ddbba6c] .. remaining tasks omitted. Aug-18 01:07:50.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 988; name: POREC:to_pairs_file (77); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/85987d69f245dc3673a20c55fbc276] Aug-18 01:07:50.542 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:07:50.543 [Task submitter] INFO nextflow.Session - [9b/bb08ec] Submitted process > POREC:to_pairs_file (78) Aug-18 01:08:46.405 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 989; name: POREC:to_pairs_file (78); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/bb08ec27a8d239eb91bba56eeb90ce] Aug-18 01:09:19.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 989; name: POREC:to_pairs_file (78); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/bb08ec27a8d239eb91bba56eeb90ce] Aug-18 01:09:19.872 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:09:19.872 [Task submitter] INFO nextflow.Session - [56/fc2747] Submitted process > POREC:to_pairs_file (79) Aug-18 01:10:48.515 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 990; name: POREC:to_pairs_file (79); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/fc2747b6415c8e1e79f2875d8a5d09] Aug-18 01:10:48.520 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:10:48.520 [Task submitter] INFO nextflow.Session - [d5/2334b0] Submitted process > POREC:to_pairs_file (80) Aug-18 01:11:33.657 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 825 -- tasks to be submitted are shown below ~> TaskHandler[id: 992; name: POREC:to_pairs_file (81); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a3f3912fe99d0cff92a71a179342f1] ~> TaskHandler[id: 993; name: POREC:to_pairs_file (82); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ea2b6a5a86561c1316080b49c24943] ~> TaskHandler[id: 994; name: POREC:to_pairs_file (83); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d24b412409323bfcc134d7b18d7bc7] ~> TaskHandler[id: 995; name: POREC:to_pairs_file (84); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/c7fa093e4de752f596dc08c405f2fc] ~> TaskHandler[id: 996; name: POREC:to_pairs_file (85); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/aba0082c2a145298c9a0c75fd673e9] ~> TaskHandler[id: 997; name: POREC:to_pairs_file (86); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1fe4b5ee1d3360ce123259304c450a] ~> TaskHandler[id: 998; name: POREC:to_pairs_file (87); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/246f6f69a9558b39818b3f0ddbba6c] ~> TaskHandler[id: 999; name: POREC:to_pairs_file (88); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/7240d1742d61bba798c0a7f162c8f5] ~> TaskHandler[id: 1000; name: POREC:to_pairs_file (89); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/7a957b525e82060360029cf250468c] ~> TaskHandler[id: 1001; name: POREC:to_pairs_file (90); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/70392384a2ac14574c63a86998a8e9] .. remaining tasks omitted. Aug-18 01:12:16.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 991; name: POREC:to_pairs_file (80); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/2334b065b0ce2a212998b505ed1ffb] Aug-18 01:12:16.806 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:12:16.806 [Task submitter] INFO nextflow.Session - [15/a3f391] Submitted process > POREC:to_pairs_file (81) Aug-18 01:13:46.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 992; name: POREC:to_pairs_file (81); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a3f3912fe99d0cff92a71a179342f1] Aug-18 01:13:46.514 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 992; name: POREC:to_pairs_file (81); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a3f3912fe99d0cff92a71a179342f1] Aug-18 01:13:46.522 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:13:46.522 [Task submitter] INFO nextflow.Session - [01/ea2b6a] Submitted process > POREC:to_pairs_file (82) Aug-18 01:15:15.420 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 993; name: POREC:to_pairs_file (82); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/ea2b6a5a86561c1316080b49c24943] Aug-18 01:15:15.426 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:15:15.426 [Task submitter] INFO nextflow.Session - [e2/d24b41] Submitted process > POREC:to_pairs_file (83) Aug-18 01:16:33.666 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 822 -- tasks to be submitted are shown below ~> TaskHandler[id: 995; name: POREC:to_pairs_file (84); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/c7fa093e4de752f596dc08c405f2fc] ~> TaskHandler[id: 996; name: POREC:to_pairs_file (85); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/aba0082c2a145298c9a0c75fd673e9] ~> TaskHandler[id: 997; name: POREC:to_pairs_file (86); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1fe4b5ee1d3360ce123259304c450a] ~> TaskHandler[id: 998; name: POREC:to_pairs_file (87); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/246f6f69a9558b39818b3f0ddbba6c] ~> TaskHandler[id: 999; name: POREC:to_pairs_file (88); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/7240d1742d61bba798c0a7f162c8f5] ~> TaskHandler[id: 1000; name: POREC:to_pairs_file (89); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/7a957b525e82060360029cf250468c] ~> TaskHandler[id: 1001; name: POREC:to_pairs_file (90); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/70392384a2ac14574c63a86998a8e9] ~> TaskHandler[id: 1002; name: POREC:to_pairs_file (91); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/e494cccaf6055a2620c6cbb024bf32] ~> TaskHandler[id: 1003; name: POREC:to_pairs_file (92); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/21e8b41329876d17f06b4f1109f98d] ~> TaskHandler[id: 1004; name: POREC:to_pairs_file (93); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/8b3bbd2e1a0759be47859ee0b6e65b] .. remaining tasks omitted. Aug-18 01:16:44.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 994; name: POREC:to_pairs_file (83); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/d24b412409323bfcc134d7b18d7bc7] Aug-18 01:16:44.438 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:16:44.438 [Task submitter] INFO nextflow.Session - [16/c7fa09] Submitted process > POREC:to_pairs_file (84) Aug-18 01:18:11.804 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 995; name: POREC:to_pairs_file (84); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/c7fa093e4de752f596dc08c405f2fc] Aug-18 01:18:11.810 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:18:11.810 [Task submitter] INFO nextflow.Session - [f5/aba008] Submitted process > POREC:to_pairs_file (85) Aug-18 01:18:46.556 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 996; name: POREC:to_pairs_file (85); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/aba0082c2a145298c9a0c75fd673e9] Aug-18 01:19:39.475 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 996; name: POREC:to_pairs_file (85); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/aba0082c2a145298c9a0c75fd673e9] Aug-18 01:19:39.488 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:19:39.488 [Task submitter] INFO nextflow.Session - [c0/1fe4b5] Submitted process > POREC:to_pairs_file (86) Aug-18 01:21:07.124 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 997; name: POREC:to_pairs_file (86); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/1fe4b5ee1d3360ce123259304c450a] Aug-18 01:21:07.158 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:21:07.159 [Task submitter] INFO nextflow.Session - [2b/246f6f] Submitted process > POREC:to_pairs_file (87) Aug-18 01:21:34.243 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 818 -- tasks to be submitted are shown below ~> TaskHandler[id: 999; name: POREC:to_pairs_file (88); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/7240d1742d61bba798c0a7f162c8f5] ~> TaskHandler[id: 1000; name: POREC:to_pairs_file (89); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/7a957b525e82060360029cf250468c] ~> TaskHandler[id: 1001; name: POREC:to_pairs_file (90); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/70392384a2ac14574c63a86998a8e9] ~> TaskHandler[id: 1002; name: POREC:to_pairs_file (91); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/e494cccaf6055a2620c6cbb024bf32] ~> TaskHandler[id: 1003; name: POREC:to_pairs_file (92); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/21e8b41329876d17f06b4f1109f98d] ~> TaskHandler[id: 1004; name: POREC:to_pairs_file (93); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/8b3bbd2e1a0759be47859ee0b6e65b] ~> TaskHandler[id: 1005; name: POREC:to_pairs_file (94); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/4e627cbccd4e5ea3388a3f15ce9518] ~> TaskHandler[id: 1006; name: POREC:to_pairs_file (95); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4612eefdd69b5ad61740ac9c114076] ~> TaskHandler[id: 1007; name: POREC:to_pairs_file (96); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/cfd350d4c29fe6ac6587f0ed463bb5] ~> TaskHandler[id: 1008; name: POREC:to_pairs_file (97); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/697fe5234f213dbd5c9ce610262e62] .. remaining tasks omitted. Aug-18 01:22:35.984 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 998; name: POREC:to_pairs_file (87); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/246f6f69a9558b39818b3f0ddbba6c] Aug-18 01:22:35.990 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:22:35.990 [Task submitter] INFO nextflow.Session - [38/7240d1] Submitted process > POREC:to_pairs_file (88) Aug-18 01:23:46.577 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 999; name: POREC:to_pairs_file (88); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/7240d1742d61bba798c0a7f162c8f5] Aug-18 01:24:02.557 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 999; name: POREC:to_pairs_file (88); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/7240d1742d61bba798c0a7f162c8f5] Aug-18 01:24:02.563 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:24:02.563 [Task submitter] INFO nextflow.Session - [c0/7a957b] Submitted process > POREC:to_pairs_file (89) Aug-18 01:25:29.992 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1000; name: POREC:to_pairs_file (89); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/7a957b525e82060360029cf250468c] Aug-18 01:25:30.026 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:25:30.026 [Task submitter] INFO nextflow.Session - [43/703923] Submitted process > POREC:to_pairs_file (90) Aug-18 01:26:35.220 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 815 -- tasks to be submitted are shown below ~> TaskHandler[id: 1002; name: POREC:to_pairs_file (91); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/e494cccaf6055a2620c6cbb024bf32] ~> TaskHandler[id: 1003; name: POREC:to_pairs_file (92); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/21e8b41329876d17f06b4f1109f98d] ~> TaskHandler[id: 1004; name: POREC:to_pairs_file (93); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/8b3bbd2e1a0759be47859ee0b6e65b] ~> TaskHandler[id: 1005; name: POREC:to_pairs_file (94); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/4e627cbccd4e5ea3388a3f15ce9518] ~> TaskHandler[id: 1006; name: POREC:to_pairs_file (95); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4612eefdd69b5ad61740ac9c114076] ~> TaskHandler[id: 1007; name: POREC:to_pairs_file (96); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/cfd350d4c29fe6ac6587f0ed463bb5] ~> TaskHandler[id: 1008; name: POREC:to_pairs_file (97); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/697fe5234f213dbd5c9ce610262e62] ~> TaskHandler[id: 1009; name: POREC:to_pairs_file (98); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/dff72a843369df3d5b9d8f6de73f7c] ~> TaskHandler[id: 1010; name: POREC:to_pairs_file (99); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a1c4af4308ebb4d148ce490eb2e755] ~> TaskHandler[id: 1011; name: POREC:to_pairs_file (100); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/872bb9908fff7027f08442c080eeba] .. remaining tasks omitted. Aug-18 01:27:01.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1001; name: POREC:to_pairs_file (90); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/70392384a2ac14574c63a86998a8e9] Aug-18 01:27:01.250 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:27:01.250 [Task submitter] INFO nextflow.Session - [fc/e494cc] Submitted process > POREC:to_pairs_file (91) Aug-18 01:28:27.939 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1002; name: POREC:to_pairs_file (91); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/e494cccaf6055a2620c6cbb024bf32] Aug-18 01:28:27.945 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:28:27.945 [Task submitter] INFO nextflow.Session - [e4/21e8b4] Submitted process > POREC:to_pairs_file (92) Aug-18 01:28:46.657 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1003; name: POREC:to_pairs_file (92); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/21e8b41329876d17f06b4f1109f98d] Aug-18 01:29:54.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1003; name: POREC:to_pairs_file (92); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/21e8b41329876d17f06b4f1109f98d] Aug-18 01:29:54.837 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:29:54.859 [Task submitter] INFO nextflow.Session - [03/8b3bbd] Submitted process > POREC:to_pairs_file (93) Aug-18 01:31:22.445 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1004; name: POREC:to_pairs_file (93); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/8b3bbd2e1a0759be47859ee0b6e65b] Aug-18 01:31:22.454 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:31:22.454 [Task submitter] INFO nextflow.Session - [b6/4e627c] Submitted process > POREC:to_pairs_file (94) Aug-18 01:31:35.498 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 811 -- tasks to be submitted are shown below ~> TaskHandler[id: 1006; name: POREC:to_pairs_file (95); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4612eefdd69b5ad61740ac9c114076] ~> TaskHandler[id: 1007; name: POREC:to_pairs_file (96); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/cfd350d4c29fe6ac6587f0ed463bb5] ~> TaskHandler[id: 1008; name: POREC:to_pairs_file (97); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/697fe5234f213dbd5c9ce610262e62] ~> TaskHandler[id: 1009; name: POREC:to_pairs_file (98); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/dff72a843369df3d5b9d8f6de73f7c] ~> TaskHandler[id: 1010; name: POREC:to_pairs_file (99); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a1c4af4308ebb4d148ce490eb2e755] ~> TaskHandler[id: 1011; name: POREC:to_pairs_file (100); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/872bb9908fff7027f08442c080eeba] ~> TaskHandler[id: 1012; name: POREC:to_pairs_file (101); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/06dbbaf902a30fab535799d8290966] ~> TaskHandler[id: 1013; name: POREC:to_pairs_file (102); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/5655ef2e391233c9a8b6c24a83495b] ~> TaskHandler[id: 1014; name: POREC:to_pairs_file (103); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/ef9e9bfc041cddc600c8879f002b9d] ~> TaskHandler[id: 1015; name: POREC:to_pairs_file (104); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/7f3bef8d3150bfdb4a7e6e5a29d441] .. remaining tasks omitted. Aug-18 01:32:52.062 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1005; name: POREC:to_pairs_file (94); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/4e627cbccd4e5ea3388a3f15ce9518] Aug-18 01:32:52.101 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:32:52.101 [Task submitter] INFO nextflow.Session - [3f/4612ee] Submitted process > POREC:to_pairs_file (95) Aug-18 01:33:46.754 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1006; name: POREC:to_pairs_file (95); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4612eefdd69b5ad61740ac9c114076] Aug-18 01:34:24.880 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1006; name: POREC:to_pairs_file (95); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4612eefdd69b5ad61740ac9c114076] Aug-18 01:34:24.885 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:34:24.914 [Task submitter] INFO nextflow.Session - [61/cfd350] Submitted process > POREC:to_pairs_file (96) Aug-18 01:35:59.021 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1007; name: POREC:to_pairs_file (96); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/cfd350d4c29fe6ac6587f0ed463bb5] Aug-18 01:35:59.028 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:35:59.029 [Task submitter] INFO nextflow.Session - [ed/697fe5] Submitted process > POREC:to_pairs_file (97) Aug-18 01:36:36.143 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 808 -- tasks to be submitted are shown below ~> TaskHandler[id: 1009; name: POREC:to_pairs_file (98); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/dff72a843369df3d5b9d8f6de73f7c] ~> TaskHandler[id: 1010; name: POREC:to_pairs_file (99); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a1c4af4308ebb4d148ce490eb2e755] ~> TaskHandler[id: 1011; name: POREC:to_pairs_file (100); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/872bb9908fff7027f08442c080eeba] ~> TaskHandler[id: 1012; name: POREC:to_pairs_file (101); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/06dbbaf902a30fab535799d8290966] ~> TaskHandler[id: 1013; name: POREC:to_pairs_file (102); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/5655ef2e391233c9a8b6c24a83495b] ~> TaskHandler[id: 1014; name: POREC:to_pairs_file (103); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/ef9e9bfc041cddc600c8879f002b9d] ~> TaskHandler[id: 1015; name: POREC:to_pairs_file (104); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/7f3bef8d3150bfdb4a7e6e5a29d441] ~> TaskHandler[id: 1016; name: POREC:to_pairs_file (105); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/12e6ceccd42bb0a712caed60850baa] ~> TaskHandler[id: 1017; name: POREC:to_pairs_file (106); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/bfd224f2468c89324989cb89240228] ~> TaskHandler[id: 1018; name: POREC:to_pairs_file (107); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/41ba41105fcb1555129909bce17c18] .. remaining tasks omitted. Aug-18 01:37:25.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1008; name: POREC:to_pairs_file (97); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/697fe5234f213dbd5c9ce610262e62] Aug-18 01:37:25.810 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:37:25.810 [Task submitter] INFO nextflow.Session - [5a/dff72a] Submitted process > POREC:to_pairs_file (98) Aug-18 01:38:46.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1009; name: POREC:to_pairs_file (98); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/dff72a843369df3d5b9d8f6de73f7c] Aug-18 01:38:57.319 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1009; name: POREC:to_pairs_file (98); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/dff72a843369df3d5b9d8f6de73f7c] Aug-18 01:38:57.325 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:38:57.325 [Task submitter] INFO nextflow.Session - [3f/a1c4af] Submitted process > POREC:to_pairs_file (99) Aug-18 01:41:20.872 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1010; name: POREC:to_pairs_file (99); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a1c4af4308ebb4d148ce490eb2e755] Aug-18 01:41:20.879 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:41:20.879 [Task submitter] INFO nextflow.Session - [5e/872bb9] Submitted process > POREC:to_pairs_file (100) Aug-18 01:41:36.930 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 805 -- tasks to be submitted are shown below ~> TaskHandler[id: 1012; name: POREC:to_pairs_file (101); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/06dbbaf902a30fab535799d8290966] ~> TaskHandler[id: 1013; name: POREC:to_pairs_file (102); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/5655ef2e391233c9a8b6c24a83495b] ~> TaskHandler[id: 1014; name: POREC:to_pairs_file (103); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/ef9e9bfc041cddc600c8879f002b9d] ~> TaskHandler[id: 1015; name: POREC:to_pairs_file (104); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/7f3bef8d3150bfdb4a7e6e5a29d441] ~> TaskHandler[id: 1016; name: POREC:to_pairs_file (105); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/12e6ceccd42bb0a712caed60850baa] ~> TaskHandler[id: 1017; name: POREC:to_pairs_file (106); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/bfd224f2468c89324989cb89240228] ~> TaskHandler[id: 1018; name: POREC:to_pairs_file (107); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/41ba41105fcb1555129909bce17c18] ~> TaskHandler[id: 1019; name: POREC:to_pairs_file (108); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/bbdc23040f9ce08dc528452b4fee31] ~> TaskHandler[id: 1020; name: POREC:to_pairs_file (109); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/8ea614998e71b94c681d784216969a] ~> TaskHandler[id: 1021; name: POREC:to_pairs_file (110); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/87e7276a3897aad74d2fdeb63f5cd6] .. remaining tasks omitted. Aug-18 01:43:04.268 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1011; name: POREC:to_pairs_file (100); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/872bb9908fff7027f08442c080eeba] Aug-18 01:43:04.275 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:43:04.275 [Task submitter] INFO nextflow.Session - [29/06dbba] Submitted process > POREC:to_pairs_file (101) Aug-18 01:43:46.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1012; name: POREC:to_pairs_file (101); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/06dbbaf902a30fab535799d8290966] Aug-18 01:44:40.172 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1012; name: POREC:to_pairs_file (101); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/06dbbaf902a30fab535799d8290966] Aug-18 01:44:40.178 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:44:40.178 [Task submitter] INFO nextflow.Session - [08/5655ef] Submitted process > POREC:to_pairs_file (102) Aug-18 01:46:07.447 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1013; name: POREC:to_pairs_file (102); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/5655ef2e391233c9a8b6c24a83495b] Aug-18 01:46:07.458 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:46:07.459 [Task submitter] INFO nextflow.Session - [7a/ef9e9b] Submitted process > POREC:to_pairs_file (103) Aug-18 01:46:37.552 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 802 -- tasks to be submitted are shown below ~> TaskHandler[id: 1015; name: POREC:to_pairs_file (104); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/7f3bef8d3150bfdb4a7e6e5a29d441] ~> TaskHandler[id: 1016; name: POREC:to_pairs_file (105); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/12e6ceccd42bb0a712caed60850baa] ~> TaskHandler[id: 1017; name: POREC:to_pairs_file (106); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/bfd224f2468c89324989cb89240228] ~> TaskHandler[id: 1018; name: POREC:to_pairs_file (107); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/41ba41105fcb1555129909bce17c18] ~> TaskHandler[id: 1019; name: POREC:to_pairs_file (108); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/bbdc23040f9ce08dc528452b4fee31] ~> TaskHandler[id: 1020; name: POREC:to_pairs_file (109); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/8ea614998e71b94c681d784216969a] ~> TaskHandler[id: 1021; name: POREC:to_pairs_file (110); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/87e7276a3897aad74d2fdeb63f5cd6] ~> TaskHandler[id: 1022; name: POREC:to_pairs_file (111); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/398fd055988d1ecb8adec913822126] ~> TaskHandler[id: 1023; name: POREC:to_pairs_file (112); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7aa932651e21253f6f2079a2ca561a] ~> TaskHandler[id: 1024; name: POREC:to_pairs_file (113); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24651bef139bac03e522952ce8edb8] .. remaining tasks omitted. Aug-18 01:47:49.062 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1014; name: POREC:to_pairs_file (103); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/ef9e9bfc041cddc600c8879f002b9d] Aug-18 01:47:49.067 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:47:49.067 [Task submitter] INFO nextflow.Session - [10/7f3bef] Submitted process > POREC:to_pairs_file (104) Aug-18 01:48:46.916 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1015; name: POREC:to_pairs_file (104); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/7f3bef8d3150bfdb4a7e6e5a29d441] Aug-18 01:49:17.116 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1015; name: POREC:to_pairs_file (104); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/7f3bef8d3150bfdb4a7e6e5a29d441] Aug-18 01:49:17.125 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:49:17.125 [Task submitter] INFO nextflow.Session - [5c/12e6ce] Submitted process > POREC:to_pairs_file (105) Aug-18 01:50:50.677 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1016; name: POREC:to_pairs_file (105); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/12e6ceccd42bb0a712caed60850baa] Aug-18 01:50:50.685 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:50:50.685 [Task submitter] INFO nextflow.Session - [ef/bfd224] Submitted process > POREC:to_pairs_file (106) Aug-18 01:51:37.828 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 799 -- tasks to be submitted are shown below ~> TaskHandler[id: 1018; name: POREC:to_pairs_file (107); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/41ba41105fcb1555129909bce17c18] ~> TaskHandler[id: 1019; name: POREC:to_pairs_file (108); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/bbdc23040f9ce08dc528452b4fee31] ~> TaskHandler[id: 1020; name: POREC:to_pairs_file (109); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/8ea614998e71b94c681d784216969a] ~> TaskHandler[id: 1021; name: POREC:to_pairs_file (110); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/87e7276a3897aad74d2fdeb63f5cd6] ~> TaskHandler[id: 1022; name: POREC:to_pairs_file (111); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/398fd055988d1ecb8adec913822126] ~> TaskHandler[id: 1023; name: POREC:to_pairs_file (112); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7aa932651e21253f6f2079a2ca561a] ~> TaskHandler[id: 1024; name: POREC:to_pairs_file (113); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24651bef139bac03e522952ce8edb8] ~> TaskHandler[id: 1025; name: POREC:to_pairs_file (114); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/07961fdcb458e8b88292a02248b1c5] ~> TaskHandler[id: 1026; name: POREC:to_pairs_file (115); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/a1c87bf80a9eee4fb52dd00d9a372c] ~> TaskHandler[id: 1027; name: POREC:to_pairs_file (116); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/8653a356dcc6b19bebfd7187e54d51] .. remaining tasks omitted. Aug-18 01:52:21.867 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1017; name: POREC:to_pairs_file (106); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/bfd224f2468c89324989cb89240228] Aug-18 01:52:21.873 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:52:21.874 [Task submitter] INFO nextflow.Session - [2e/41ba41] Submitted process > POREC:to_pairs_file (107) Aug-18 01:53:46.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1018; name: POREC:to_pairs_file (107); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/41ba41105fcb1555129909bce17c18] Aug-18 01:53:50.545 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1018; name: POREC:to_pairs_file (107); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/41ba41105fcb1555129909bce17c18] Aug-18 01:53:50.552 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:53:50.552 [Task submitter] INFO nextflow.Session - [de/bbdc23] Submitted process > POREC:to_pairs_file (108) Aug-18 01:55:19.473 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1019; name: POREC:to_pairs_file (108); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/bbdc23040f9ce08dc528452b4fee31] Aug-18 01:55:19.509 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:55:19.509 [Task submitter] INFO nextflow.Session - [bc/8ea614] Submitted process > POREC:to_pairs_file (109) Aug-18 01:56:38.742 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 796 -- tasks to be submitted are shown below ~> TaskHandler[id: 1021; name: POREC:to_pairs_file (110); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/87e7276a3897aad74d2fdeb63f5cd6] ~> TaskHandler[id: 1022; name: POREC:to_pairs_file (111); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/398fd055988d1ecb8adec913822126] ~> TaskHandler[id: 1023; name: POREC:to_pairs_file (112); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7aa932651e21253f6f2079a2ca561a] ~> TaskHandler[id: 1024; name: POREC:to_pairs_file (113); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24651bef139bac03e522952ce8edb8] ~> TaskHandler[id: 1025; name: POREC:to_pairs_file (114); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/07961fdcb458e8b88292a02248b1c5] ~> TaskHandler[id: 1026; name: POREC:to_pairs_file (115); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/a1c87bf80a9eee4fb52dd00d9a372c] ~> TaskHandler[id: 1027; name: POREC:to_pairs_file (116); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/8653a356dcc6b19bebfd7187e54d51] ~> TaskHandler[id: 1028; name: POREC:to_pairs_file (117); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/7aebd960d2e0ccb80ace71b0f1acee] ~> TaskHandler[id: 1029; name: POREC:to_pairs_file (118); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/a567995d2aab1e6c6aaf28231be241] ~> TaskHandler[id: 1030; name: POREC:to_pairs_file (119); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/c62d958dfac434a5e5508f0d72899e] .. remaining tasks omitted. Aug-18 01:56:46.698 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1020; name: POREC:to_pairs_file (109); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/8ea614998e71b94c681d784216969a] Aug-18 01:56:46.705 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:56:46.706 [Task submitter] INFO nextflow.Session - [26/87e727] Submitted process > POREC:to_pairs_file (110) Aug-18 01:58:13.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1021; name: POREC:to_pairs_file (110); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/87e7276a3897aad74d2fdeb63f5cd6] Aug-18 01:58:13.426 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:58:13.426 [Task submitter] INFO nextflow.Session - [93/398fd0] Submitted process > POREC:to_pairs_file (111) Aug-18 01:58:47.082 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1022; name: POREC:to_pairs_file (111); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/398fd055988d1ecb8adec913822126] Aug-18 01:59:51.573 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1022; name: POREC:to_pairs_file (111); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/398fd055988d1ecb8adec913822126] Aug-18 01:59:51.596 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 01:59:51.597 [Task submitter] INFO nextflow.Session - [06/7aa932] Submitted process > POREC:to_pairs_file (112) Aug-18 02:01:26.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1023; name: POREC:to_pairs_file (112); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/7aa932651e21253f6f2079a2ca561a] Aug-18 02:01:26.845 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:01:26.845 [Task submitter] INFO nextflow.Session - [63/24651b] Submitted process > POREC:to_pairs_file (113) Aug-18 02:01:38.882 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 792 -- tasks to be submitted are shown below ~> TaskHandler[id: 1025; name: POREC:to_pairs_file (114); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/07961fdcb458e8b88292a02248b1c5] ~> TaskHandler[id: 1026; name: POREC:to_pairs_file (115); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/a1c87bf80a9eee4fb52dd00d9a372c] ~> TaskHandler[id: 1027; name: POREC:to_pairs_file (116); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/8653a356dcc6b19bebfd7187e54d51] ~> TaskHandler[id: 1028; name: POREC:to_pairs_file (117); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/7aebd960d2e0ccb80ace71b0f1acee] ~> TaskHandler[id: 1029; name: POREC:to_pairs_file (118); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/a567995d2aab1e6c6aaf28231be241] ~> TaskHandler[id: 1030; name: POREC:to_pairs_file (119); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/c62d958dfac434a5e5508f0d72899e] ~> TaskHandler[id: 1031; name: POREC:to_pairs_file (120); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/8fdc2cdba045955c9226a115cd18bf] ~> TaskHandler[id: 1032; name: POREC:to_pairs_file (121); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ad52d38f955c73a63ec3dce25b839] ~> TaskHandler[id: 1033; name: POREC:to_pairs_file (122); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/8360ca37570edce0141239aa4a9c08] ~> TaskHandler[id: 1034; name: POREC:to_pairs_file (123); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/a79046e581188e866004fc1f2b796b] .. remaining tasks omitted. Aug-18 02:02:54.207 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1024; name: POREC:to_pairs_file (113); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24651bef139bac03e522952ce8edb8] Aug-18 02:02:54.218 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:02:54.219 [Task submitter] INFO nextflow.Session - [22/07961f] Submitted process > POREC:to_pairs_file (114) Aug-18 02:03:47.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1025; name: POREC:to_pairs_file (114); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/07961fdcb458e8b88292a02248b1c5] Aug-18 02:04:21.322 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1025; name: POREC:to_pairs_file (114); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/07961fdcb458e8b88292a02248b1c5] Aug-18 02:04:21.331 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:04:21.331 [Task submitter] INFO nextflow.Session - [4c/a1c87b] Submitted process > POREC:to_pairs_file (115) Aug-18 02:05:47.847 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1026; name: POREC:to_pairs_file (115); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/a1c87bf80a9eee4fb52dd00d9a372c] Aug-18 02:05:47.855 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:05:47.856 [Task submitter] INFO nextflow.Session - [b7/8653a3] Submitted process > POREC:to_pairs_file (116) Aug-18 02:06:39.003 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 789 -- tasks to be submitted are shown below ~> TaskHandler[id: 1028; name: POREC:to_pairs_file (117); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/7aebd960d2e0ccb80ace71b0f1acee] ~> TaskHandler[id: 1029; name: POREC:to_pairs_file (118); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/a567995d2aab1e6c6aaf28231be241] ~> TaskHandler[id: 1030; name: POREC:to_pairs_file (119); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/c62d958dfac434a5e5508f0d72899e] ~> TaskHandler[id: 1031; name: POREC:to_pairs_file (120); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/8fdc2cdba045955c9226a115cd18bf] ~> TaskHandler[id: 1032; name: POREC:to_pairs_file (121); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ad52d38f955c73a63ec3dce25b839] ~> TaskHandler[id: 1033; name: POREC:to_pairs_file (122); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/8360ca37570edce0141239aa4a9c08] ~> TaskHandler[id: 1034; name: POREC:to_pairs_file (123); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/a79046e581188e866004fc1f2b796b] ~> TaskHandler[id: 1035; name: POREC:to_pairs_file (124); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0093df87707be26d33e219d2d7ea07] ~> TaskHandler[id: 1036; name: POREC:to_pairs_file (125); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/babafa7083e9c908817c74abaccebe] ~> TaskHandler[id: 1037; name: POREC:to_pairs_file (126); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/52ba9c0e754b9ea0a0fcebb4b2f265] .. remaining tasks omitted. Aug-18 02:07:16.572 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1027; name: POREC:to_pairs_file (116); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/8653a356dcc6b19bebfd7187e54d51] Aug-18 02:07:16.578 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:07:16.578 [Task submitter] INFO nextflow.Session - [89/7aebd9] Submitted process > POREC:to_pairs_file (117) Aug-18 02:08:44.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1028; name: POREC:to_pairs_file (117); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/7aebd960d2e0ccb80ace71b0f1acee] Aug-18 02:08:44.911 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:08:44.912 [Task submitter] INFO nextflow.Session - [b9/a56799] Submitted process > POREC:to_pairs_file (118) Aug-18 02:08:47.206 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1029; name: POREC:to_pairs_file (118); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/a567995d2aab1e6c6aaf28231be241] Aug-18 02:10:13.181 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1029; name: POREC:to_pairs_file (118); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/a567995d2aab1e6c6aaf28231be241] Aug-18 02:10:13.192 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:10:13.193 [Task submitter] INFO nextflow.Session - [4a/c62d95] Submitted process > POREC:to_pairs_file (119) Aug-18 02:11:39.445 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 786 -- tasks to be submitted are shown below ~> TaskHandler[id: 1031; name: POREC:to_pairs_file (120); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/8fdc2cdba045955c9226a115cd18bf] ~> TaskHandler[id: 1032; name: POREC:to_pairs_file (121); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ad52d38f955c73a63ec3dce25b839] ~> TaskHandler[id: 1033; name: POREC:to_pairs_file (122); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/8360ca37570edce0141239aa4a9c08] ~> TaskHandler[id: 1034; name: POREC:to_pairs_file (123); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/a79046e581188e866004fc1f2b796b] ~> TaskHandler[id: 1035; name: POREC:to_pairs_file (124); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0093df87707be26d33e219d2d7ea07] ~> TaskHandler[id: 1036; name: POREC:to_pairs_file (125); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/babafa7083e9c908817c74abaccebe] ~> TaskHandler[id: 1037; name: POREC:to_pairs_file (126); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/52ba9c0e754b9ea0a0fcebb4b2f265] ~> TaskHandler[id: 1038; name: POREC:to_pairs_file (127); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/d319c952233b69e3c5e2ab00c6e2f1] ~> TaskHandler[id: 1039; name: POREC:to_pairs_file (128); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/1c03f1e6bde074c336439c7df87334] ~> TaskHandler[id: 1040; name: POREC:to_pairs_file (129); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/ae5f04c98734a1b9208013b6f7e86a] .. remaining tasks omitted. Aug-18 02:11:40.549 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1030; name: POREC:to_pairs_file (119); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/c62d958dfac434a5e5508f0d72899e] Aug-18 02:11:40.554 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:11:40.554 [Task submitter] INFO nextflow.Session - [e2/8fdc2c] Submitted process > POREC:to_pairs_file (120) Aug-18 02:13:08.091 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1031; name: POREC:to_pairs_file (120); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/8fdc2cdba045955c9226a115cd18bf] Aug-18 02:13:08.098 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:13:08.098 [Task submitter] INFO nextflow.Session - [59/6ad52d] Submitted process > POREC:to_pairs_file (121) Aug-18 02:13:47.237 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1032; name: POREC:to_pairs_file (121); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ad52d38f955c73a63ec3dce25b839] Aug-18 02:14:35.615 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1032; name: POREC:to_pairs_file (121); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ad52d38f955c73a63ec3dce25b839] Aug-18 02:14:35.623 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:14:35.623 [Task submitter] INFO nextflow.Session - [e9/8360ca] Submitted process > POREC:to_pairs_file (122) Aug-18 02:16:02.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1033; name: POREC:to_pairs_file (122); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/8360ca37570edce0141239aa4a9c08] Aug-18 02:16:02.808 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:16:02.809 [Task submitter] INFO nextflow.Session - [65/a79046] Submitted process > POREC:to_pairs_file (123) Aug-18 02:16:39.915 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 782 -- tasks to be submitted are shown below ~> TaskHandler[id: 1035; name: POREC:to_pairs_file (124); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0093df87707be26d33e219d2d7ea07] ~> TaskHandler[id: 1036; name: POREC:to_pairs_file (125); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/babafa7083e9c908817c74abaccebe] ~> TaskHandler[id: 1037; name: POREC:to_pairs_file (126); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/52ba9c0e754b9ea0a0fcebb4b2f265] ~> TaskHandler[id: 1038; name: POREC:to_pairs_file (127); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/d319c952233b69e3c5e2ab00c6e2f1] ~> TaskHandler[id: 1039; name: POREC:to_pairs_file (128); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/1c03f1e6bde074c336439c7df87334] ~> TaskHandler[id: 1040; name: POREC:to_pairs_file (129); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/ae5f04c98734a1b9208013b6f7e86a] ~> TaskHandler[id: 1041; name: POREC:to_pairs_file (130); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/ec7d9ff81fe31132aad1f79059fcf0] ~> TaskHandler[id: 1042; name: POREC:to_pairs_file (131); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/95bfe85203ff40079e7bb1156b51f9] ~> TaskHandler[id: 1043; name: POREC:to_pairs_file (132); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1d5404210157a6fd5df90f7d6f09aa] ~> TaskHandler[id: 1044; name: POREC:to_pairs_file (133); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/2ece26793979b83385df7cc6a86584] .. remaining tasks omitted. Aug-18 02:17:32.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1034; name: POREC:to_pairs_file (123); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/a79046e581188e866004fc1f2b796b] Aug-18 02:17:32.223 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:17:32.224 [Task submitter] INFO nextflow.Session - [89/0093df] Submitted process > POREC:to_pairs_file (124) Aug-18 02:18:47.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1035; name: POREC:to_pairs_file (124); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0093df87707be26d33e219d2d7ea07] Aug-18 02:18:59.872 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1035; name: POREC:to_pairs_file (124); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0093df87707be26d33e219d2d7ea07] Aug-18 02:18:59.879 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:18:59.879 [Task submitter] INFO nextflow.Session - [b6/babafa] Submitted process > POREC:to_pairs_file (125) Aug-18 02:20:28.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1036; name: POREC:to_pairs_file (125); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/babafa7083e9c908817c74abaccebe] Aug-18 02:20:28.330 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:20:28.331 [Task submitter] INFO nextflow.Session - [5f/52ba9c] Submitted process > POREC:to_pairs_file (126) Aug-18 02:21:40.549 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 779 -- tasks to be submitted are shown below ~> TaskHandler[id: 1038; name: POREC:to_pairs_file (127); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/d319c952233b69e3c5e2ab00c6e2f1] ~> TaskHandler[id: 1039; name: POREC:to_pairs_file (128); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/1c03f1e6bde074c336439c7df87334] ~> TaskHandler[id: 1040; name: POREC:to_pairs_file (129); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/ae5f04c98734a1b9208013b6f7e86a] ~> TaskHandler[id: 1041; name: POREC:to_pairs_file (130); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/ec7d9ff81fe31132aad1f79059fcf0] ~> TaskHandler[id: 1042; name: POREC:to_pairs_file (131); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/95bfe85203ff40079e7bb1156b51f9] ~> TaskHandler[id: 1043; name: POREC:to_pairs_file (132); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1d5404210157a6fd5df90f7d6f09aa] ~> TaskHandler[id: 1044; name: POREC:to_pairs_file (133); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/2ece26793979b83385df7cc6a86584] ~> TaskHandler[id: 1045; name: POREC:to_pairs_file (134); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a3d6b0aadd5e32dbc8a1c2040ac655] ~> TaskHandler[id: 1046; name: POREC:to_pairs_file (135); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/338856f939a388a94f99e9b3527369] ~> TaskHandler[id: 1047; name: POREC:to_pairs_file (136); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/101cac25948f95b3adb8f067798d54] .. remaining tasks omitted. Aug-18 02:21:54.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1037; name: POREC:to_pairs_file (126); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/52ba9c0e754b9ea0a0fcebb4b2f265] Aug-18 02:21:55.003 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:21:55.004 [Task submitter] INFO nextflow.Session - [c5/d319c9] Submitted process > POREC:to_pairs_file (127) Aug-18 02:23:21.227 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1038; name: POREC:to_pairs_file (127); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/d319c952233b69e3c5e2ab00c6e2f1] Aug-18 02:23:21.253 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:23:21.253 [Task submitter] INFO nextflow.Session - [ab/e14c7f] Submitted process > POREC:to_pairs_file (635) Aug-18 02:23:47.365 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1546; name: POREC:to_pairs_file (635); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/e14c7f5517be67fea213770c3a6f53] Aug-18 02:24:48.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1546; name: POREC:to_pairs_file (635); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/e14c7f5517be67fea213770c3a6f53] Aug-18 02:24:48.983 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:24:48.984 [Task submitter] INFO nextflow.Session - [57/1c03f1] Submitted process > POREC:to_pairs_file (128) Aug-18 02:26:16.533 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1039; name: POREC:to_pairs_file (128); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/1c03f1e6bde074c336439c7df87334] Aug-18 02:26:16.542 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:26:16.542 [Task submitter] INFO nextflow.Session - [72/ae5f04] Submitted process > POREC:to_pairs_file (129) Aug-18 02:26:40.615 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 775 -- tasks to be submitted are shown below ~> TaskHandler[id: 1041; name: POREC:to_pairs_file (130); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/ec7d9ff81fe31132aad1f79059fcf0] ~> TaskHandler[id: 1042; name: POREC:to_pairs_file (131); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/95bfe85203ff40079e7bb1156b51f9] ~> TaskHandler[id: 1043; name: POREC:to_pairs_file (132); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1d5404210157a6fd5df90f7d6f09aa] ~> TaskHandler[id: 1044; name: POREC:to_pairs_file (133); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/2ece26793979b83385df7cc6a86584] ~> TaskHandler[id: 1045; name: POREC:to_pairs_file (134); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a3d6b0aadd5e32dbc8a1c2040ac655] ~> TaskHandler[id: 1046; name: POREC:to_pairs_file (135); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/338856f939a388a94f99e9b3527369] ~> TaskHandler[id: 1047; name: POREC:to_pairs_file (136); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/101cac25948f95b3adb8f067798d54] ~> TaskHandler[id: 1048; name: POREC:to_pairs_file (137); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d8b87b76e541c9642018e618268220] ~> TaskHandler[id: 1049; name: POREC:to_pairs_file (138); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/fba39dcba0ec1ec434f5548d4c5076] ~> TaskHandler[id: 1050; name: POREC:to_pairs_file (139); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/7bdd69fd003d840a4bf10de1943575] .. remaining tasks omitted. Aug-18 02:27:42.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1040; name: POREC:to_pairs_file (129); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/ae5f04c98734a1b9208013b6f7e86a] Aug-18 02:27:43.001 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:27:43.002 [Task submitter] INFO nextflow.Session - [f1/ec7d9f] Submitted process > POREC:to_pairs_file (130) Aug-18 02:28:47.366 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1041; name: POREC:to_pairs_file (130); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/ec7d9ff81fe31132aad1f79059fcf0] Aug-18 02:29:10.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1041; name: POREC:to_pairs_file (130); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/ec7d9ff81fe31132aad1f79059fcf0] Aug-18 02:29:10.577 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:29:10.578 [Task submitter] INFO nextflow.Session - [93/95bfe8] Submitted process > POREC:to_pairs_file (131) Aug-18 02:30:36.182 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1042; name: POREC:to_pairs_file (131); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/95bfe85203ff40079e7bb1156b51f9] Aug-18 02:30:36.187 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:30:36.187 [Task submitter] INFO nextflow.Session - [c4/1d5404] Submitted process > POREC:to_pairs_file (132) Aug-18 02:31:41.374 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 772 -- tasks to be submitted are shown below ~> TaskHandler[id: 1044; name: POREC:to_pairs_file (133); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/2ece26793979b83385df7cc6a86584] ~> TaskHandler[id: 1045; name: POREC:to_pairs_file (134); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a3d6b0aadd5e32dbc8a1c2040ac655] ~> TaskHandler[id: 1046; name: POREC:to_pairs_file (135); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/338856f939a388a94f99e9b3527369] ~> TaskHandler[id: 1047; name: POREC:to_pairs_file (136); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/101cac25948f95b3adb8f067798d54] ~> TaskHandler[id: 1048; name: POREC:to_pairs_file (137); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d8b87b76e541c9642018e618268220] ~> TaskHandler[id: 1049; name: POREC:to_pairs_file (138); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/fba39dcba0ec1ec434f5548d4c5076] ~> TaskHandler[id: 1050; name: POREC:to_pairs_file (139); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/7bdd69fd003d840a4bf10de1943575] ~> TaskHandler[id: 1051; name: POREC:to_pairs_file (140); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/4928d8898f53f2cf8ac3939d11ad8b] ~> TaskHandler[id: 1052; name: POREC:to_pairs_file (141); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/ece787b33ff9c7dbd65958dc896dc4] ~> TaskHandler[id: 1053; name: POREC:to_pairs_file (142); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/00597cdf51da010abf77902e46a929] .. remaining tasks omitted. Aug-18 02:32:03.131 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1043; name: POREC:to_pairs_file (132); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/1d5404210157a6fd5df90f7d6f09aa] Aug-18 02:32:03.138 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:32:03.139 [Task submitter] INFO nextflow.Session - [1b/2ece26] Submitted process > POREC:to_pairs_file (133) Aug-18 02:33:29.984 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1044; name: POREC:to_pairs_file (133); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/2ece26793979b83385df7cc6a86584] Aug-18 02:33:29.997 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:33:29.997 [Task submitter] INFO nextflow.Session - [ee/a3d6b0] Submitted process > POREC:to_pairs_file (134) Aug-18 02:33:47.408 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1045; name: POREC:to_pairs_file (134); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a3d6b0aadd5e32dbc8a1c2040ac655] Aug-18 02:34:55.863 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1045; name: POREC:to_pairs_file (134); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/a3d6b0aadd5e32dbc8a1c2040ac655] Aug-18 02:34:55.868 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:34:55.869 [Task submitter] INFO nextflow.Session - [e6/338856] Submitted process > POREC:to_pairs_file (135) Aug-18 02:36:22.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1046; name: POREC:to_pairs_file (135); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e6/338856f939a388a94f99e9b3527369] Aug-18 02:36:22.826 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:36:22.827 [Task submitter] INFO nextflow.Session - [be/101cac] Submitted process > POREC:to_pairs_file (136) Aug-18 02:36:41.883 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 768 -- tasks to be submitted are shown below ~> TaskHandler[id: 1048; name: POREC:to_pairs_file (137); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d8b87b76e541c9642018e618268220] ~> TaskHandler[id: 1049; name: POREC:to_pairs_file (138); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/fba39dcba0ec1ec434f5548d4c5076] ~> TaskHandler[id: 1050; name: POREC:to_pairs_file (139); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/7bdd69fd003d840a4bf10de1943575] ~> TaskHandler[id: 1051; name: POREC:to_pairs_file (140); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/4928d8898f53f2cf8ac3939d11ad8b] ~> TaskHandler[id: 1052; name: POREC:to_pairs_file (141); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/ece787b33ff9c7dbd65958dc896dc4] ~> TaskHandler[id: 1053; name: POREC:to_pairs_file (142); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/00597cdf51da010abf77902e46a929] ~> TaskHandler[id: 1054; name: POREC:to_pairs_file (143); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/0709ff7a90ff450ffef31b5d13abe4] ~> TaskHandler[id: 1055; name: POREC:to_pairs_file (144); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ce0a22f35048c8cc1e2b6ef3ad59c8] ~> TaskHandler[id: 1056; name: POREC:to_pairs_file (145); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f31bc8c921768e427a3fcc516dd5b3] ~> TaskHandler[id: 1057; name: POREC:to_pairs_file (146); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/0cb9a5c0934b35bf8b5d6bb9ed2ac7] .. remaining tasks omitted. Aug-18 02:37:49.000 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1047; name: POREC:to_pairs_file (136); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/101cac25948f95b3adb8f067798d54] Aug-18 02:37:49.008 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:37:49.008 [Task submitter] INFO nextflow.Session - [e8/d8b87b] Submitted process > POREC:to_pairs_file (137) Aug-18 02:38:47.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1048; name: POREC:to_pairs_file (137); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d8b87b76e541c9642018e618268220] Aug-18 02:39:14.946 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1048; name: POREC:to_pairs_file (137); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/d8b87b76e541c9642018e618268220] Aug-18 02:39:14.952 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:39:14.952 [Task submitter] INFO nextflow.Session - [2f/fba39d] Submitted process > POREC:to_pairs_file (138) Aug-18 02:40:41.515 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1049; name: POREC:to_pairs_file (138); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/fba39dcba0ec1ec434f5548d4c5076] Aug-18 02:40:41.523 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:40:41.523 [Task submitter] INFO nextflow.Session - [fd/7bdd69] Submitted process > POREC:to_pairs_file (139) Aug-18 02:41:42.694 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 765 -- tasks to be submitted are shown below ~> TaskHandler[id: 1051; name: POREC:to_pairs_file (140); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/4928d8898f53f2cf8ac3939d11ad8b] ~> TaskHandler[id: 1052; name: POREC:to_pairs_file (141); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/ece787b33ff9c7dbd65958dc896dc4] ~> TaskHandler[id: 1053; name: POREC:to_pairs_file (142); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/00597cdf51da010abf77902e46a929] ~> TaskHandler[id: 1054; name: POREC:to_pairs_file (143); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/0709ff7a90ff450ffef31b5d13abe4] ~> TaskHandler[id: 1055; name: POREC:to_pairs_file (144); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ce0a22f35048c8cc1e2b6ef3ad59c8] ~> TaskHandler[id: 1056; name: POREC:to_pairs_file (145); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f31bc8c921768e427a3fcc516dd5b3] ~> TaskHandler[id: 1057; name: POREC:to_pairs_file (146); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/0cb9a5c0934b35bf8b5d6bb9ed2ac7] ~> TaskHandler[id: 1058; name: POREC:to_pairs_file (147); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/b4e1d76bb6b5a9a0ad0a04b78fe814] ~> TaskHandler[id: 1059; name: POREC:to_pairs_file (148); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/1c6172cb56a1a140758ae848c16721] ~> TaskHandler[id: 1060; name: POREC:to_pairs_file (149); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/308034d4c11bc1ce18d988ff02a8b3] .. remaining tasks omitted. Aug-18 02:42:09.928 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1050; name: POREC:to_pairs_file (139); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/7bdd69fd003d840a4bf10de1943575] Aug-18 02:42:09.938 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:42:09.938 [Task submitter] INFO nextflow.Session - [1a/4928d8] Submitted process > POREC:to_pairs_file (140) Aug-18 02:43:38.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1051; name: POREC:to_pairs_file (140); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/4928d8898f53f2cf8ac3939d11ad8b] Aug-18 02:43:38.342 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:43:38.343 [Task submitter] INFO nextflow.Session - [76/ece787] Submitted process > POREC:to_pairs_file (141) Aug-18 02:43:47.544 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1052; name: POREC:to_pairs_file (141); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/ece787b33ff9c7dbd65958dc896dc4] Aug-18 02:45:06.237 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1052; name: POREC:to_pairs_file (141); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/ece787b33ff9c7dbd65958dc896dc4] Aug-18 02:45:06.245 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:45:06.245 [Task submitter] INFO nextflow.Session - [2f/00597c] Submitted process > POREC:to_pairs_file (142) Aug-18 02:46:35.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1053; name: POREC:to_pairs_file (142); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/00597cdf51da010abf77902e46a929] Aug-18 02:46:35.238 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:46:35.238 [Task submitter] INFO nextflow.Session - [db/0709ff] Submitted process > POREC:to_pairs_file (143) Aug-18 02:46:43.268 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 761 -- tasks to be submitted are shown below ~> TaskHandler[id: 1055; name: POREC:to_pairs_file (144); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ce0a22f35048c8cc1e2b6ef3ad59c8] ~> TaskHandler[id: 1056; name: POREC:to_pairs_file (145); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f31bc8c921768e427a3fcc516dd5b3] ~> TaskHandler[id: 1057; name: POREC:to_pairs_file (146); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/0cb9a5c0934b35bf8b5d6bb9ed2ac7] ~> TaskHandler[id: 1058; name: POREC:to_pairs_file (147); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/b4e1d76bb6b5a9a0ad0a04b78fe814] ~> TaskHandler[id: 1059; name: POREC:to_pairs_file (148); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/1c6172cb56a1a140758ae848c16721] ~> TaskHandler[id: 1060; name: POREC:to_pairs_file (149); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/308034d4c11bc1ce18d988ff02a8b3] ~> TaskHandler[id: 1061; name: POREC:to_pairs_file (150); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/f0b4e98d36a32123664350db1b1d75] ~> TaskHandler[id: 1062; name: POREC:to_pairs_file (151); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/d0fa7569eea43e6cbb31feff35ae84] ~> TaskHandler[id: 1063; name: POREC:to_pairs_file (152); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/e512ecd8b153831e323a69dcae6fd8] ~> TaskHandler[id: 1064; name: POREC:to_pairs_file (153); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/e85b698426d39237e4a09fc2afbe55] .. remaining tasks omitted. Aug-18 02:48:03.622 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1054; name: POREC:to_pairs_file (143); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/0709ff7a90ff450ffef31b5d13abe4] Aug-18 02:48:03.629 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:48:03.630 [Task submitter] INFO nextflow.Session - [91/ce0a22] Submitted process > POREC:to_pairs_file (144) Aug-18 02:48:47.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1055; name: POREC:to_pairs_file (144); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ce0a22f35048c8cc1e2b6ef3ad59c8] Aug-18 02:49:31.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1055; name: POREC:to_pairs_file (144); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ce0a22f35048c8cc1e2b6ef3ad59c8] Aug-18 02:49:31.852 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:49:31.853 [Task submitter] INFO nextflow.Session - [73/f31bc8] Submitted process > POREC:to_pairs_file (145) Aug-18 02:50:59.947 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1056; name: POREC:to_pairs_file (145); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/f31bc8c921768e427a3fcc516dd5b3] Aug-18 02:50:59.956 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:50:59.957 [Task submitter] INFO nextflow.Session - [51/0cb9a5] Submitted process > POREC:to_pairs_file (146) Aug-18 02:51:44.096 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 758 -- tasks to be submitted are shown below ~> TaskHandler[id: 1058; name: POREC:to_pairs_file (147); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/b4e1d76bb6b5a9a0ad0a04b78fe814] ~> TaskHandler[id: 1059; name: POREC:to_pairs_file (148); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/1c6172cb56a1a140758ae848c16721] ~> TaskHandler[id: 1060; name: POREC:to_pairs_file (149); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/308034d4c11bc1ce18d988ff02a8b3] ~> TaskHandler[id: 1061; name: POREC:to_pairs_file (150); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/f0b4e98d36a32123664350db1b1d75] ~> TaskHandler[id: 1062; name: POREC:to_pairs_file (151); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/d0fa7569eea43e6cbb31feff35ae84] ~> TaskHandler[id: 1063; name: POREC:to_pairs_file (152); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/e512ecd8b153831e323a69dcae6fd8] ~> TaskHandler[id: 1064; name: POREC:to_pairs_file (153); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/e85b698426d39237e4a09fc2afbe55] ~> TaskHandler[id: 1065; name: POREC:to_pairs_file (154); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/5658da95dd8b8ee10eba5c7abb4c54] ~> TaskHandler[id: 1066; name: POREC:to_pairs_file (155); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/245bfa1ee5c7a2fb6e9811ad63d9ef] ~> TaskHandler[id: 1067; name: POREC:to_pairs_file (156); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/8a3563d05ed67ff2cd3c91bc248db1] .. remaining tasks omitted. Aug-18 02:52:28.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1057; name: POREC:to_pairs_file (146); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/0cb9a5c0934b35bf8b5d6bb9ed2ac7] Aug-18 02:52:28.465 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:52:28.465 [Task submitter] INFO nextflow.Session - [a1/b4e1d7] Submitted process > POREC:to_pairs_file (147) Aug-18 02:53:47.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1058; name: POREC:to_pairs_file (147); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/b4e1d76bb6b5a9a0ad0a04b78fe814] Aug-18 02:53:56.549 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1058; name: POREC:to_pairs_file (147); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/b4e1d76bb6b5a9a0ad0a04b78fe814] Aug-18 02:53:56.558 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:53:56.559 [Task submitter] INFO nextflow.Session - [8c/1c6172] Submitted process > POREC:to_pairs_file (148) Aug-18 02:55:24.896 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1059; name: POREC:to_pairs_file (148); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/1c6172cb56a1a140758ae848c16721] Aug-18 02:55:24.904 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:55:24.905 [Task submitter] INFO nextflow.Session - [8f/308034] Submitted process > POREC:to_pairs_file (149) Aug-18 02:56:44.124 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 755 -- tasks to be submitted are shown below ~> TaskHandler[id: 1061; name: POREC:to_pairs_file (150); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/f0b4e98d36a32123664350db1b1d75] ~> TaskHandler[id: 1062; name: POREC:to_pairs_file (151); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/d0fa7569eea43e6cbb31feff35ae84] ~> TaskHandler[id: 1063; name: POREC:to_pairs_file (152); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/e512ecd8b153831e323a69dcae6fd8] ~> TaskHandler[id: 1064; name: POREC:to_pairs_file (153); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/e85b698426d39237e4a09fc2afbe55] ~> TaskHandler[id: 1065; name: POREC:to_pairs_file (154); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/5658da95dd8b8ee10eba5c7abb4c54] ~> TaskHandler[id: 1066; name: POREC:to_pairs_file (155); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/245bfa1ee5c7a2fb6e9811ad63d9ef] ~> TaskHandler[id: 1067; name: POREC:to_pairs_file (156); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/8a3563d05ed67ff2cd3c91bc248db1] ~> TaskHandler[id: 1068; name: POREC:to_pairs_file (157); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/e337cc3c9bf8ce3a9f1bb4f8faedb7] ~> TaskHandler[id: 1069; name: POREC:to_pairs_file (158); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/4bf05c87ab511ac90b7e58d62e5418] ~> TaskHandler[id: 1070; name: POREC:to_pairs_file (159); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/fa7bbbaf0c0771b56e792771d20b9c] .. remaining tasks omitted. Aug-18 02:56:52.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1060; name: POREC:to_pairs_file (149); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/308034d4c11bc1ce18d988ff02a8b3] Aug-18 02:56:52.928 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:56:52.928 [Task submitter] INFO nextflow.Session - [2b/f0b4e9] Submitted process > POREC:to_pairs_file (150) Aug-18 02:58:19.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1061; name: POREC:to_pairs_file (150); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/f0b4e98d36a32123664350db1b1d75] Aug-18 02:58:19.755 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:58:19.756 [Task submitter] INFO nextflow.Session - [22/d0fa75] Submitted process > POREC:to_pairs_file (151) Aug-18 02:58:47.686 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1062; name: POREC:to_pairs_file (151); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/d0fa7569eea43e6cbb31feff35ae84] Aug-18 02:59:48.077 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1062; name: POREC:to_pairs_file (151); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/d0fa7569eea43e6cbb31feff35ae84] Aug-18 02:59:48.084 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 02:59:48.084 [Task submitter] INFO nextflow.Session - [10/e512ec] Submitted process > POREC:to_pairs_file (152) Aug-18 03:01:16.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1063; name: POREC:to_pairs_file (152); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/e512ecd8b153831e323a69dcae6fd8] Aug-18 03:01:16.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:01:16.954 [Task submitter] INFO nextflow.Session - [b4/e85b69] Submitted process > POREC:to_pairs_file (153) Aug-18 03:01:45.037 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 751 -- tasks to be submitted are shown below ~> TaskHandler[id: 1065; name: POREC:to_pairs_file (154); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/5658da95dd8b8ee10eba5c7abb4c54] ~> TaskHandler[id: 1066; name: POREC:to_pairs_file (155); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/245bfa1ee5c7a2fb6e9811ad63d9ef] ~> TaskHandler[id: 1067; name: POREC:to_pairs_file (156); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/8a3563d05ed67ff2cd3c91bc248db1] ~> TaskHandler[id: 1068; name: POREC:to_pairs_file (157); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/e337cc3c9bf8ce3a9f1bb4f8faedb7] ~> TaskHandler[id: 1069; name: POREC:to_pairs_file (158); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/4bf05c87ab511ac90b7e58d62e5418] ~> TaskHandler[id: 1070; name: POREC:to_pairs_file (159); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/fa7bbbaf0c0771b56e792771d20b9c] ~> TaskHandler[id: 1071; name: POREC:to_pairs_file (160); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a286ae16216f41fb191bcba8889482] ~> TaskHandler[id: 1072; name: POREC:to_pairs_file (161); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/bab58456965146d036e6cd79eb0505] ~> TaskHandler[id: 1073; name: POREC:to_pairs_file (162); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/f043d88f844a5c4c90f55e901baae4] ~> TaskHandler[id: 1074; name: POREC:to_pairs_file (163); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/772ecafd1c7e701a81c49a49314529] .. remaining tasks omitted. Aug-18 03:02:48.586 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1064; name: POREC:to_pairs_file (153); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/e85b698426d39237e4a09fc2afbe55] Aug-18 03:02:48.590 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:02:48.590 [Task submitter] INFO nextflow.Session - [e8/5658da] Submitted process > POREC:to_pairs_file (154) Aug-18 03:03:47.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1065; name: POREC:to_pairs_file (154); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/5658da95dd8b8ee10eba5c7abb4c54] Aug-18 03:04:22.278 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1065; name: POREC:to_pairs_file (154); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/5658da95dd8b8ee10eba5c7abb4c54] Aug-18 03:04:22.309 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:04:22.309 [Task submitter] INFO nextflow.Session - [ed/245bfa] Submitted process > POREC:to_pairs_file (155) Aug-18 03:05:54.913 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1066; name: POREC:to_pairs_file (155); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/245bfa1ee5c7a2fb6e9811ad63d9ef] Aug-18 03:05:54.944 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:05:54.944 [Task submitter] INFO nextflow.Session - [30/8a3563] Submitted process > POREC:to_pairs_file (156) Aug-18 03:06:45.057 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 748 -- tasks to be submitted are shown below ~> TaskHandler[id: 1068; name: POREC:to_pairs_file (157); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/e337cc3c9bf8ce3a9f1bb4f8faedb7] ~> TaskHandler[id: 1069; name: POREC:to_pairs_file (158); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/4bf05c87ab511ac90b7e58d62e5418] ~> TaskHandler[id: 1070; name: POREC:to_pairs_file (159); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/fa7bbbaf0c0771b56e792771d20b9c] ~> TaskHandler[id: 1071; name: POREC:to_pairs_file (160); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a286ae16216f41fb191bcba8889482] ~> TaskHandler[id: 1072; name: POREC:to_pairs_file (161); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/bab58456965146d036e6cd79eb0505] ~> TaskHandler[id: 1073; name: POREC:to_pairs_file (162); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/f043d88f844a5c4c90f55e901baae4] ~> TaskHandler[id: 1074; name: POREC:to_pairs_file (163); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/772ecafd1c7e701a81c49a49314529] ~> TaskHandler[id: 1075; name: POREC:to_pairs_file (164); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/267ceb4ed1469c8675f55640ae1ea2] ~> TaskHandler[id: 1076; name: POREC:to_pairs_file (165); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/fbae6337baf39d2da7b82dcef050c4] ~> TaskHandler[id: 1077; name: POREC:to_pairs_file (166); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/3834176efd8a88ac68a36e06acd1a8] .. remaining tasks omitted. Aug-18 03:07:31.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1067; name: POREC:to_pairs_file (156); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/8a3563d05ed67ff2cd3c91bc248db1] Aug-18 03:07:31.451 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:07:31.451 [Task submitter] INFO nextflow.Session - [65/e337cc] Submitted process > POREC:to_pairs_file (157) Aug-18 03:08:47.792 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1068; name: POREC:to_pairs_file (157); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/e337cc3c9bf8ce3a9f1bb4f8faedb7] Aug-18 03:09:10.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1068; name: POREC:to_pairs_file (157); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/e337cc3c9bf8ce3a9f1bb4f8faedb7] Aug-18 03:09:10.078 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:09:10.078 [Task submitter] INFO nextflow.Session - [3c/4bf05c] Submitted process > POREC:to_pairs_file (158) Aug-18 03:10:45.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1069; name: POREC:to_pairs_file (158); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/4bf05c87ab511ac90b7e58d62e5418] Aug-18 03:10:45.875 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:10:45.875 [Task submitter] INFO nextflow.Session - [c4/fa7bbb] Submitted process > POREC:to_pairs_file (159) Aug-18 03:11:46.005 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 745 -- tasks to be submitted are shown below ~> TaskHandler[id: 1071; name: POREC:to_pairs_file (160); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a286ae16216f41fb191bcba8889482] ~> TaskHandler[id: 1072; name: POREC:to_pairs_file (161); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/bab58456965146d036e6cd79eb0505] ~> TaskHandler[id: 1073; name: POREC:to_pairs_file (162); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/f043d88f844a5c4c90f55e901baae4] ~> TaskHandler[id: 1074; name: POREC:to_pairs_file (163); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/772ecafd1c7e701a81c49a49314529] ~> TaskHandler[id: 1075; name: POREC:to_pairs_file (164); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/267ceb4ed1469c8675f55640ae1ea2] ~> TaskHandler[id: 1076; name: POREC:to_pairs_file (165); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/fbae6337baf39d2da7b82dcef050c4] ~> TaskHandler[id: 1077; name: POREC:to_pairs_file (166); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/3834176efd8a88ac68a36e06acd1a8] ~> TaskHandler[id: 1078; name: POREC:to_pairs_file (167); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/d13bff0fb703ca721d3fbc514f6074] ~> TaskHandler[id: 1079; name: POREC:to_pairs_file (168); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/93a9bad10ee6ed700d171898b9aef6] ~> TaskHandler[id: 1080; name: POREC:to_pairs_file (169); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/3d7138dba6ccd894192e7c4e65febf] .. remaining tasks omitted. Aug-18 03:12:20.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1070; name: POREC:to_pairs_file (159); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/fa7bbbaf0c0771b56e792771d20b9c] Aug-18 03:12:20.520 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:12:20.520 [Task submitter] INFO nextflow.Session - [39/a286ae] Submitted process > POREC:to_pairs_file (160) Aug-18 03:13:47.841 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1071; name: POREC:to_pairs_file (160); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a286ae16216f41fb191bcba8889482] Aug-18 03:13:54.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1071; name: POREC:to_pairs_file (160); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a286ae16216f41fb191bcba8889482] Aug-18 03:13:54.695 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:13:54.695 [Task submitter] INFO nextflow.Session - [8f/bab584] Submitted process > POREC:to_pairs_file (161) Aug-18 03:15:29.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1072; name: POREC:to_pairs_file (161); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/bab58456965146d036e6cd79eb0505] Aug-18 03:15:29.043 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:15:29.043 [Task submitter] INFO nextflow.Session - [21/f043d8] Submitted process > POREC:to_pairs_file (162) Aug-18 03:16:46.205 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 742 -- tasks to be submitted are shown below ~> TaskHandler[id: 1074; name: POREC:to_pairs_file (163); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/772ecafd1c7e701a81c49a49314529] ~> TaskHandler[id: 1075; name: POREC:to_pairs_file (164); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/267ceb4ed1469c8675f55640ae1ea2] ~> TaskHandler[id: 1076; name: POREC:to_pairs_file (165); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/fbae6337baf39d2da7b82dcef050c4] ~> TaskHandler[id: 1077; name: POREC:to_pairs_file (166); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/3834176efd8a88ac68a36e06acd1a8] ~> TaskHandler[id: 1078; name: POREC:to_pairs_file (167); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/d13bff0fb703ca721d3fbc514f6074] ~> TaskHandler[id: 1079; name: POREC:to_pairs_file (168); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/93a9bad10ee6ed700d171898b9aef6] ~> TaskHandler[id: 1080; name: POREC:to_pairs_file (169); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/3d7138dba6ccd894192e7c4e65febf] ~> TaskHandler[id: 1081; name: POREC:to_pairs_file (170); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/2be446387c3e775138524e44f7d255] ~> TaskHandler[id: 1082; name: POREC:to_pairs_file (171); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/57fed782623f85c7df5393d8e3656b] ~> TaskHandler[id: 1083; name: POREC:to_pairs_file (172); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/5d005a4f6d31a444388e94188d0fa8] .. remaining tasks omitted. Aug-18 03:17:03.592 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1073; name: POREC:to_pairs_file (162); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/f043d88f844a5c4c90f55e901baae4] Aug-18 03:17:03.626 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:17:03.626 [Task submitter] INFO nextflow.Session - [e4/772eca] Submitted process > POREC:to_pairs_file (163) Aug-18 03:18:36.528 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1074; name: POREC:to_pairs_file (163); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/772ecafd1c7e701a81c49a49314529] Aug-18 03:18:36.563 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:18:36.563 [Task submitter] INFO nextflow.Session - [0c/267ceb] Submitted process > POREC:to_pairs_file (164) Aug-18 03:18:47.853 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1075; name: POREC:to_pairs_file (164); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/267ceb4ed1469c8675f55640ae1ea2] Aug-18 03:20:10.932 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1075; name: POREC:to_pairs_file (164); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/267ceb4ed1469c8675f55640ae1ea2] Aug-18 03:20:10.965 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:20:10.965 [Task submitter] INFO nextflow.Session - [00/fbae63] Submitted process > POREC:to_pairs_file (165) Aug-18 03:21:45.178 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1076; name: POREC:to_pairs_file (165); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/fbae6337baf39d2da7b82dcef050c4] Aug-18 03:21:45.214 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:21:45.214 [Task submitter] INFO nextflow.Session - [69/383417] Submitted process > POREC:to_pairs_file (166) Aug-18 03:21:46.220 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 738 -- tasks to be submitted are shown below ~> TaskHandler[id: 1078; name: POREC:to_pairs_file (167); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/d13bff0fb703ca721d3fbc514f6074] ~> TaskHandler[id: 1079; name: POREC:to_pairs_file (168); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/93a9bad10ee6ed700d171898b9aef6] ~> TaskHandler[id: 1080; name: POREC:to_pairs_file (169); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/3d7138dba6ccd894192e7c4e65febf] ~> TaskHandler[id: 1081; name: POREC:to_pairs_file (170); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/2be446387c3e775138524e44f7d255] ~> TaskHandler[id: 1082; name: POREC:to_pairs_file (171); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/57fed782623f85c7df5393d8e3656b] ~> TaskHandler[id: 1083; name: POREC:to_pairs_file (172); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/5d005a4f6d31a444388e94188d0fa8] ~> TaskHandler[id: 1084; name: POREC:to_pairs_file (173); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ba71feaa4f5f0e623c61db8fa935d5] ~> TaskHandler[id: 1085; name: POREC:to_pairs_file (174); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/52c43b5ca74df30c10c5e32dbeb913] ~> TaskHandler[id: 1086; name: POREC:to_pairs_file (175); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/b57f30a7f898e76d02fc7a37c9c97b] ~> TaskHandler[id: 1087; name: POREC:to_pairs_file (176); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/3d0f3c3f1cf3fbfabad69f7a56fc2d] .. remaining tasks omitted. Aug-18 03:23:19.992 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1077; name: POREC:to_pairs_file (166); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/3834176efd8a88ac68a36e06acd1a8] Aug-18 03:23:19.996 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:23:19.996 [Task submitter] INFO nextflow.Session - [12/d13bff] Submitted process > POREC:to_pairs_file (167) Aug-18 03:23:47.861 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1078; name: POREC:to_pairs_file (167); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/d13bff0fb703ca721d3fbc514f6074] Aug-18 03:25:39.433 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1078; name: POREC:to_pairs_file (167); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/d13bff0fb703ca721d3fbc514f6074] Aug-18 03:25:39.459 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:25:39.459 [Task submitter] INFO nextflow.Session - [86/93a9ba] Submitted process > POREC:to_pairs_file (168) Aug-18 03:26:46.594 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 736 -- tasks to be submitted are shown below ~> TaskHandler[id: 1080; name: POREC:to_pairs_file (169); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/3d7138dba6ccd894192e7c4e65febf] ~> TaskHandler[id: 1081; name: POREC:to_pairs_file (170); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/2be446387c3e775138524e44f7d255] ~> TaskHandler[id: 1082; name: POREC:to_pairs_file (171); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/57fed782623f85c7df5393d8e3656b] ~> TaskHandler[id: 1083; name: POREC:to_pairs_file (172); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/5d005a4f6d31a444388e94188d0fa8] ~> TaskHandler[id: 1084; name: POREC:to_pairs_file (173); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ba71feaa4f5f0e623c61db8fa935d5] ~> TaskHandler[id: 1085; name: POREC:to_pairs_file (174); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/52c43b5ca74df30c10c5e32dbeb913] ~> TaskHandler[id: 1086; name: POREC:to_pairs_file (175); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/b57f30a7f898e76d02fc7a37c9c97b] ~> TaskHandler[id: 1087; name: POREC:to_pairs_file (176); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/3d0f3c3f1cf3fbfabad69f7a56fc2d] ~> TaskHandler[id: 1088; name: POREC:to_pairs_file (177); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9f789c84972e9946841536bcfdb869] ~> TaskHandler[id: 1089; name: POREC:to_pairs_file (178); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/c8ea16644b189694c7a81b6aa2ce6f] .. remaining tasks omitted. Aug-18 03:27:14.447 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1079; name: POREC:to_pairs_file (168); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/93a9bad10ee6ed700d171898b9aef6] Aug-18 03:27:14.479 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:27:14.479 [Task submitter] INFO nextflow.Session - [e9/3d7138] Submitted process > POREC:to_pairs_file (169) Aug-18 03:28:47.953 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1080; name: POREC:to_pairs_file (169); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/3d7138dba6ccd894192e7c4e65febf] Aug-18 03:28:49.085 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1080; name: POREC:to_pairs_file (169); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/3d7138dba6ccd894192e7c4e65febf] Aug-18 03:28:49.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:28:49.119 [Task submitter] INFO nextflow.Session - [9e/2be446] Submitted process > POREC:to_pairs_file (170) Aug-18 03:30:23.522 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1081; name: POREC:to_pairs_file (170); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/2be446387c3e775138524e44f7d255] Aug-18 03:30:23.552 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:30:23.552 [Task submitter] INFO nextflow.Session - [52/57fed7] Submitted process > POREC:to_pairs_file (171) Aug-18 03:31:46.707 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 733 -- tasks to be submitted are shown below ~> TaskHandler[id: 1083; name: POREC:to_pairs_file (172); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/5d005a4f6d31a444388e94188d0fa8] ~> TaskHandler[id: 1084; name: POREC:to_pairs_file (173); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ba71feaa4f5f0e623c61db8fa935d5] ~> TaskHandler[id: 1085; name: POREC:to_pairs_file (174); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/52c43b5ca74df30c10c5e32dbeb913] ~> TaskHandler[id: 1086; name: POREC:to_pairs_file (175); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/b57f30a7f898e76d02fc7a37c9c97b] ~> TaskHandler[id: 1087; name: POREC:to_pairs_file (176); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/3d0f3c3f1cf3fbfabad69f7a56fc2d] ~> TaskHandler[id: 1088; name: POREC:to_pairs_file (177); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9f789c84972e9946841536bcfdb869] ~> TaskHandler[id: 1089; name: POREC:to_pairs_file (178); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/c8ea16644b189694c7a81b6aa2ce6f] ~> TaskHandler[id: 1090; name: POREC:to_pairs_file (179); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/89465851749600fdfdb693b93d7087] ~> TaskHandler[id: 1091; name: POREC:to_pairs_file (180); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/5c5ec9bcb2f8e666d94b649365469c] ~> TaskHandler[id: 1092; name: POREC:to_pairs_file (181); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/8503a99b93f7ad6259cad55726ba24] .. remaining tasks omitted. Aug-18 03:32:03.739 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1082; name: POREC:to_pairs_file (171); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/57fed782623f85c7df5393d8e3656b] Aug-18 03:32:03.746 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:32:03.746 [Task submitter] INFO nextflow.Session - [90/5d005a] Submitted process > POREC:to_pairs_file (172) Aug-18 03:33:39.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1083; name: POREC:to_pairs_file (172); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/5d005a4f6d31a444388e94188d0fa8] Aug-18 03:33:39.769 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:33:39.769 [Task submitter] INFO nextflow.Session - [91/ba71fe] Submitted process > POREC:to_pairs_file (173) Aug-18 03:33:47.985 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1084; name: POREC:to_pairs_file (173); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ba71feaa4f5f0e623c61db8fa935d5] Aug-18 03:35:15.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1084; name: POREC:to_pairs_file (173); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/91/ba71feaa4f5f0e623c61db8fa935d5] Aug-18 03:35:15.215 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:35:15.215 [Task submitter] INFO nextflow.Session - [d4/52c43b] Submitted process > POREC:to_pairs_file (174) Aug-18 03:36:47.405 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 730 -- tasks to be submitted are shown below ~> TaskHandler[id: 1086; name: POREC:to_pairs_file (175); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/b57f30a7f898e76d02fc7a37c9c97b] ~> TaskHandler[id: 1087; name: POREC:to_pairs_file (176); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/3d0f3c3f1cf3fbfabad69f7a56fc2d] ~> TaskHandler[id: 1088; name: POREC:to_pairs_file (177); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9f789c84972e9946841536bcfdb869] ~> TaskHandler[id: 1089; name: POREC:to_pairs_file (178); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/c8ea16644b189694c7a81b6aa2ce6f] ~> TaskHandler[id: 1090; name: POREC:to_pairs_file (179); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/89465851749600fdfdb693b93d7087] ~> TaskHandler[id: 1091; name: POREC:to_pairs_file (180); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/5c5ec9bcb2f8e666d94b649365469c] ~> TaskHandler[id: 1092; name: POREC:to_pairs_file (181); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/8503a99b93f7ad6259cad55726ba24] ~> TaskHandler[id: 1093; name: POREC:to_pairs_file (182); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/082954ea80e992a9d6f56421742a34] ~> TaskHandler[id: 1094; name: POREC:to_pairs_file (183); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/9544c838fa9d6becc5573702867578] ~> TaskHandler[id: 1095; name: POREC:to_pairs_file (184); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/22d70cf84091b5c14f609b7b047fcc] .. remaining tasks omitted. Aug-18 03:36:49.225 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1085; name: POREC:to_pairs_file (174); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/52c43b5ca74df30c10c5e32dbeb913] Aug-18 03:36:49.250 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:36:49.250 [Task submitter] INFO nextflow.Session - [c5/b57f30] Submitted process > POREC:to_pairs_file (175) Aug-18 03:38:22.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1086; name: POREC:to_pairs_file (175); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c5/b57f30a7f898e76d02fc7a37c9c97b] Aug-18 03:38:22.055 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:38:22.055 [Task submitter] INFO nextflow.Session - [f5/3d0f3c] Submitted process > POREC:to_pairs_file (176) Aug-18 03:38:48.039 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1087; name: POREC:to_pairs_file (176); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/3d0f3c3f1cf3fbfabad69f7a56fc2d] Aug-18 03:39:55.709 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1087; name: POREC:to_pairs_file (176); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/3d0f3c3f1cf3fbfabad69f7a56fc2d] Aug-18 03:39:55.713 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:39:55.713 [Task submitter] INFO nextflow.Session - [3d/9f789c] Submitted process > POREC:to_pairs_file (177) Aug-18 03:41:31.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1088; name: POREC:to_pairs_file (177); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/9f789c84972e9946841536bcfdb869] Aug-18 03:41:31.351 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:41:31.351 [Task submitter] INFO nextflow.Session - [5a/c8ea16] Submitted process > POREC:to_pairs_file (178) Aug-18 03:41:47.434 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 726 -- tasks to be submitted are shown below ~> TaskHandler[id: 1090; name: POREC:to_pairs_file (179); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/89465851749600fdfdb693b93d7087] ~> TaskHandler[id: 1091; name: POREC:to_pairs_file (180); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/5c5ec9bcb2f8e666d94b649365469c] ~> TaskHandler[id: 1092; name: POREC:to_pairs_file (181); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/8503a99b93f7ad6259cad55726ba24] ~> TaskHandler[id: 1093; name: POREC:to_pairs_file (182); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/082954ea80e992a9d6f56421742a34] ~> TaskHandler[id: 1094; name: POREC:to_pairs_file (183); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/9544c838fa9d6becc5573702867578] ~> TaskHandler[id: 1095; name: POREC:to_pairs_file (184); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/22d70cf84091b5c14f609b7b047fcc] ~> TaskHandler[id: 1096; name: POREC:to_pairs_file (185); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/a9a331a6677d5ed1fd17ae8289961e] ~> TaskHandler[id: 1097; name: POREC:to_pairs_file (186); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bbaa77ccba827b893de8eddc2192ad] ~> TaskHandler[id: 1098; name: POREC:to_pairs_file (187); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/17e31604292999177368d2c1bef244] ~> TaskHandler[id: 1099; name: POREC:to_pairs_file (188); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/0d5ac03e5a93724a6bbb45cc056a51] .. remaining tasks omitted. Aug-18 03:43:08.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1089; name: POREC:to_pairs_file (178); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/c8ea16644b189694c7a81b6aa2ce6f] Aug-18 03:43:08.070 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:43:08.070 [Task submitter] INFO nextflow.Session - [da/894658] Submitted process > POREC:to_pairs_file (179) Aug-18 03:43:48.116 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1090; name: POREC:to_pairs_file (179); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/89465851749600fdfdb693b93d7087] Aug-18 03:44:43.349 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1090; name: POREC:to_pairs_file (179); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/89465851749600fdfdb693b93d7087] Aug-18 03:44:43.388 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:44:43.388 [Task submitter] INFO nextflow.Session - [c6/5c5ec9] Submitted process > POREC:to_pairs_file (180) Aug-18 03:46:19.113 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1091; name: POREC:to_pairs_file (180); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/5c5ec9bcb2f8e666d94b649365469c] Aug-18 03:46:19.148 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:46:19.148 [Task submitter] INFO nextflow.Session - [7a/8503a9] Submitted process > POREC:to_pairs_file (181) Aug-18 03:46:48.213 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 723 -- tasks to be submitted are shown below ~> TaskHandler[id: 1093; name: POREC:to_pairs_file (182); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/082954ea80e992a9d6f56421742a34] ~> TaskHandler[id: 1094; name: POREC:to_pairs_file (183); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/9544c838fa9d6becc5573702867578] ~> TaskHandler[id: 1095; name: POREC:to_pairs_file (184); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/22d70cf84091b5c14f609b7b047fcc] ~> TaskHandler[id: 1096; name: POREC:to_pairs_file (185); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/a9a331a6677d5ed1fd17ae8289961e] ~> TaskHandler[id: 1097; name: POREC:to_pairs_file (186); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bbaa77ccba827b893de8eddc2192ad] ~> TaskHandler[id: 1098; name: POREC:to_pairs_file (187); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/17e31604292999177368d2c1bef244] ~> TaskHandler[id: 1099; name: POREC:to_pairs_file (188); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/0d5ac03e5a93724a6bbb45cc056a51] ~> TaskHandler[id: 1100; name: POREC:to_pairs_file (189); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/a1eca1be3f130b6a5ded73687a4bf4] ~> TaskHandler[id: 1101; name: POREC:to_pairs_file (190); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/17c5d8d7da7c8e177ca902424bbef1] ~> TaskHandler[id: 1102; name: POREC:to_pairs_file (191); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/4c68c7fe854fd7e84124ab8141d131] .. remaining tasks omitted. Aug-18 03:47:53.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1092; name: POREC:to_pairs_file (181); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/8503a99b93f7ad6259cad55726ba24] Aug-18 03:47:53.631 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:47:53.631 [Task submitter] INFO nextflow.Session - [e7/082954] Submitted process > POREC:to_pairs_file (182) Aug-18 03:48:48.124 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1093; name: POREC:to_pairs_file (182); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/082954ea80e992a9d6f56421742a34] Aug-18 03:49:29.564 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1093; name: POREC:to_pairs_file (182); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/082954ea80e992a9d6f56421742a34] Aug-18 03:49:29.609 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:49:29.609 [Task submitter] INFO nextflow.Session - [1a/9544c8] Submitted process > POREC:to_pairs_file (183) Aug-18 03:51:03.740 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1094; name: POREC:to_pairs_file (183); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/9544c838fa9d6becc5573702867578] Aug-18 03:51:03.766 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:51:03.766 [Task submitter] INFO nextflow.Session - [6c/22d70c] Submitted process > POREC:to_pairs_file (184) Aug-18 03:51:48.897 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 720 -- tasks to be submitted are shown below ~> TaskHandler[id: 1096; name: POREC:to_pairs_file (185); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/a9a331a6677d5ed1fd17ae8289961e] ~> TaskHandler[id: 1097; name: POREC:to_pairs_file (186); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bbaa77ccba827b893de8eddc2192ad] ~> TaskHandler[id: 1098; name: POREC:to_pairs_file (187); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/17e31604292999177368d2c1bef244] ~> TaskHandler[id: 1099; name: POREC:to_pairs_file (188); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/0d5ac03e5a93724a6bbb45cc056a51] ~> TaskHandler[id: 1100; name: POREC:to_pairs_file (189); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/a1eca1be3f130b6a5ded73687a4bf4] ~> TaskHandler[id: 1101; name: POREC:to_pairs_file (190); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/17c5d8d7da7c8e177ca902424bbef1] ~> TaskHandler[id: 1102; name: POREC:to_pairs_file (191); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/4c68c7fe854fd7e84124ab8141d131] ~> TaskHandler[id: 1103; name: POREC:to_pairs_file (192); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4fc6c6ab14334652ee70f337b9491a] ~> TaskHandler[id: 1104; name: POREC:to_pairs_file (193); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/0c356537594a7e886af3ccf1b919a2] ~> TaskHandler[id: 1105; name: POREC:to_pairs_file (194); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/6a8fe7bd3f3238f66bfc3956d3e684] .. remaining tasks omitted. Aug-18 03:52:37.464 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1095; name: POREC:to_pairs_file (184); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/22d70cf84091b5c14f609b7b047fcc] Aug-18 03:52:37.496 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:52:37.496 [Task submitter] INFO nextflow.Session - [8b/a9a331] Submitted process > POREC:to_pairs_file (185) Aug-18 03:53:48.211 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1096; name: POREC:to_pairs_file (185); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/a9a331a6677d5ed1fd17ae8289961e] Aug-18 03:54:10.636 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1096; name: POREC:to_pairs_file (185); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/a9a331a6677d5ed1fd17ae8289961e] Aug-18 03:54:10.644 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:54:10.644 [Task submitter] INFO nextflow.Session - [26/bbaa77] Submitted process > POREC:to_pairs_file (186) Aug-18 03:55:44.092 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1097; name: POREC:to_pairs_file (186); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/bbaa77ccba827b893de8eddc2192ad] Aug-18 03:55:44.128 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:55:44.128 [Task submitter] INFO nextflow.Session - [d4/17e316] Submitted process > POREC:to_pairs_file (187) Aug-18 03:56:49.297 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 717 -- tasks to be submitted are shown below ~> TaskHandler[id: 1099; name: POREC:to_pairs_file (188); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/0d5ac03e5a93724a6bbb45cc056a51] ~> TaskHandler[id: 1100; name: POREC:to_pairs_file (189); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/a1eca1be3f130b6a5ded73687a4bf4] ~> TaskHandler[id: 1101; name: POREC:to_pairs_file (190); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/17c5d8d7da7c8e177ca902424bbef1] ~> TaskHandler[id: 1102; name: POREC:to_pairs_file (191); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/4c68c7fe854fd7e84124ab8141d131] ~> TaskHandler[id: 1103; name: POREC:to_pairs_file (192); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4fc6c6ab14334652ee70f337b9491a] ~> TaskHandler[id: 1104; name: POREC:to_pairs_file (193); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/0c356537594a7e886af3ccf1b919a2] ~> TaskHandler[id: 1105; name: POREC:to_pairs_file (194); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/6a8fe7bd3f3238f66bfc3956d3e684] ~> TaskHandler[id: 1106; name: POREC:to_pairs_file (195); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/7cd69bf000cf2aca325affcbaf8f55] ~> TaskHandler[id: 1107; name: POREC:to_pairs_file (196); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/04c0a950439c5713446a457a6efdc4] ~> TaskHandler[id: 1108; name: POREC:to_pairs_file (197); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/2acf77126b05a5acf50a645ba54e5a] .. remaining tasks omitted. Aug-18 03:57:19.096 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1098; name: POREC:to_pairs_file (187); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/17e31604292999177368d2c1bef244] Aug-18 03:57:19.130 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:57:19.130 [Task submitter] INFO nextflow.Session - [d4/0d5ac0] Submitted process > POREC:to_pairs_file (188) Aug-18 03:58:48.224 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1099; name: POREC:to_pairs_file (188); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/0d5ac03e5a93724a6bbb45cc056a51] Aug-18 03:58:53.467 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1099; name: POREC:to_pairs_file (188); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/0d5ac03e5a93724a6bbb45cc056a51] Aug-18 03:58:53.494 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 03:58:53.494 [Task submitter] INFO nextflow.Session - [16/a1eca1] Submitted process > POREC:to_pairs_file (189) Aug-18 04:00:26.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1100; name: POREC:to_pairs_file (189); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/a1eca1be3f130b6a5ded73687a4bf4] Aug-18 04:00:26.767 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:00:26.767 [Task submitter] INFO nextflow.Session - [c9/17c5d8] Submitted process > POREC:to_pairs_file (190) Aug-18 04:01:49.964 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 714 -- tasks to be submitted are shown below ~> TaskHandler[id: 1102; name: POREC:to_pairs_file (191); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/4c68c7fe854fd7e84124ab8141d131] ~> TaskHandler[id: 1103; name: POREC:to_pairs_file (192); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4fc6c6ab14334652ee70f337b9491a] ~> TaskHandler[id: 1104; name: POREC:to_pairs_file (193); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/0c356537594a7e886af3ccf1b919a2] ~> TaskHandler[id: 1105; name: POREC:to_pairs_file (194); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/6a8fe7bd3f3238f66bfc3956d3e684] ~> TaskHandler[id: 1106; name: POREC:to_pairs_file (195); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/7cd69bf000cf2aca325affcbaf8f55] ~> TaskHandler[id: 1107; name: POREC:to_pairs_file (196); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/04c0a950439c5713446a457a6efdc4] ~> TaskHandler[id: 1108; name: POREC:to_pairs_file (197); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/2acf77126b05a5acf50a645ba54e5a] ~> TaskHandler[id: 1109; name: POREC:to_pairs_file (198); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/f8d59d27e142876f29b43e033d5039] ~> TaskHandler[id: 1110; name: POREC:to_pairs_file (199); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/82db2d7f60118aec7bfa493dc26bb5] ~> TaskHandler[id: 1111; name: POREC:to_pairs_file (200); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/616caba209a1f715f4288bb0dc4a33] .. remaining tasks omitted. Aug-18 04:02:00.336 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1101; name: POREC:to_pairs_file (190); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/17c5d8d7da7c8e177ca902424bbef1] Aug-18 04:02:00.350 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:02:00.350 [Task submitter] INFO nextflow.Session - [5b/4c68c7] Submitted process > POREC:to_pairs_file (191) Aug-18 04:03:33.052 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1102; name: POREC:to_pairs_file (191); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/4c68c7fe854fd7e84124ab8141d131] Aug-18 04:03:33.086 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:03:33.086 [Task submitter] INFO nextflow.Session - [34/4fc6c6] Submitted process > POREC:to_pairs_file (192) Aug-18 04:03:48.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1103; name: POREC:to_pairs_file (192); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4fc6c6ab14334652ee70f337b9491a] Aug-18 04:05:05.916 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1103; name: POREC:to_pairs_file (192); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/4fc6c6ab14334652ee70f337b9491a] Aug-18 04:05:05.957 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:05:05.958 [Task submitter] INFO nextflow.Session - [3d/0c3565] Submitted process > POREC:to_pairs_file (193) Aug-18 04:06:39.453 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1104; name: POREC:to_pairs_file (193); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/0c356537594a7e886af3ccf1b919a2] Aug-18 04:06:39.460 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:06:39.461 [Task submitter] INFO nextflow.Session - [b1/6a8fe7] Submitted process > POREC:to_pairs_file (194) Aug-18 04:06:50.495 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 710 -- tasks to be submitted are shown below ~> TaskHandler[id: 1106; name: POREC:to_pairs_file (195); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/7cd69bf000cf2aca325affcbaf8f55] ~> TaskHandler[id: 1107; name: POREC:to_pairs_file (196); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/04c0a950439c5713446a457a6efdc4] ~> TaskHandler[id: 1108; name: POREC:to_pairs_file (197); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/2acf77126b05a5acf50a645ba54e5a] ~> TaskHandler[id: 1109; name: POREC:to_pairs_file (198); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/f8d59d27e142876f29b43e033d5039] ~> TaskHandler[id: 1110; name: POREC:to_pairs_file (199); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/82db2d7f60118aec7bfa493dc26bb5] ~> TaskHandler[id: 1111; name: POREC:to_pairs_file (200); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/616caba209a1f715f4288bb0dc4a33] ~> TaskHandler[id: 1112; name: POREC:to_pairs_file (201); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/e1f82a19887de42de12c5de0afdb7b] ~> TaskHandler[id: 1113; name: POREC:to_pairs_file (202); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/868f4da295260165abe2c8781d1d39] ~> TaskHandler[id: 1114; name: POREC:to_pairs_file (203); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/89636e5af12d7f6067ccfc80653004] ~> TaskHandler[id: 1115; name: POREC:to_pairs_file (204); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/9cd28a23b0788d92b22a03f522717e] .. remaining tasks omitted. Aug-18 04:08:12.434 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1105; name: POREC:to_pairs_file (194); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/6a8fe7bd3f3238f66bfc3956d3e684] Aug-18 04:08:12.470 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:08:12.470 [Task submitter] INFO nextflow.Session - [18/7cd69b] Submitted process > POREC:to_pairs_file (195) Aug-18 04:08:48.372 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1106; name: POREC:to_pairs_file (195); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/7cd69bf000cf2aca325affcbaf8f55] Aug-18 04:09:46.173 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1106; name: POREC:to_pairs_file (195); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/7cd69bf000cf2aca325affcbaf8f55] Aug-18 04:09:46.204 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:09:46.204 [Task submitter] INFO nextflow.Session - [1e/04c0a9] Submitted process > POREC:to_pairs_file (196) Aug-18 04:11:18.664 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1107; name: POREC:to_pairs_file (196); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/04c0a950439c5713446a457a6efdc4] Aug-18 04:11:18.704 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:11:18.704 [Task submitter] INFO nextflow.Session - [7d/2acf77] Submitted process > POREC:to_pairs_file (197) Aug-18 04:11:50.794 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 707 -- tasks to be submitted are shown below ~> TaskHandler[id: 1109; name: POREC:to_pairs_file (198); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/f8d59d27e142876f29b43e033d5039] ~> TaskHandler[id: 1110; name: POREC:to_pairs_file (199); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/82db2d7f60118aec7bfa493dc26bb5] ~> TaskHandler[id: 1111; name: POREC:to_pairs_file (200); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/616caba209a1f715f4288bb0dc4a33] ~> TaskHandler[id: 1112; name: POREC:to_pairs_file (201); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/e1f82a19887de42de12c5de0afdb7b] ~> TaskHandler[id: 1113; name: POREC:to_pairs_file (202); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/868f4da295260165abe2c8781d1d39] ~> TaskHandler[id: 1114; name: POREC:to_pairs_file (203); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/89636e5af12d7f6067ccfc80653004] ~> TaskHandler[id: 1115; name: POREC:to_pairs_file (204); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/9cd28a23b0788d92b22a03f522717e] ~> TaskHandler[id: 1116; name: POREC:to_pairs_file (205); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/25aed8018cacfefade30c872eeaecc] ~> TaskHandler[id: 1117; name: POREC:to_pairs_file (206); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/068febe34d0dbe6a60f431c2f3f320] ~> TaskHandler[id: 1118; name: POREC:to_pairs_file (207); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/f489925d5450bc84313fab2d77a740] .. remaining tasks omitted. Aug-18 04:12:54.319 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1108; name: POREC:to_pairs_file (197); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/2acf77126b05a5acf50a645ba54e5a] Aug-18 04:12:54.337 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:12:54.337 [Task submitter] INFO nextflow.Session - [44/f8d59d] Submitted process > POREC:to_pairs_file (198) Aug-18 04:13:48.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1109; name: POREC:to_pairs_file (198); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/f8d59d27e142876f29b43e033d5039] Aug-18 04:14:29.003 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1109; name: POREC:to_pairs_file (198); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/f8d59d27e142876f29b43e033d5039] Aug-18 04:14:29.034 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:14:29.034 [Task submitter] INFO nextflow.Session - [17/82db2d] Submitted process > POREC:to_pairs_file (199) Aug-18 04:16:03.336 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1110; name: POREC:to_pairs_file (199); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/82db2d7f60118aec7bfa493dc26bb5] Aug-18 04:16:03.345 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:16:03.346 [Task submitter] INFO nextflow.Session - [e4/616cab] Submitted process > POREC:to_pairs_file (200) Aug-18 04:16:51.476 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 704 -- tasks to be submitted are shown below ~> TaskHandler[id: 1112; name: POREC:to_pairs_file (201); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/e1f82a19887de42de12c5de0afdb7b] ~> TaskHandler[id: 1113; name: POREC:to_pairs_file (202); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/868f4da295260165abe2c8781d1d39] ~> TaskHandler[id: 1114; name: POREC:to_pairs_file (203); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/89636e5af12d7f6067ccfc80653004] ~> TaskHandler[id: 1115; name: POREC:to_pairs_file (204); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/9cd28a23b0788d92b22a03f522717e] ~> TaskHandler[id: 1116; name: POREC:to_pairs_file (205); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/25aed8018cacfefade30c872eeaecc] ~> TaskHandler[id: 1117; name: POREC:to_pairs_file (206); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/068febe34d0dbe6a60f431c2f3f320] ~> TaskHandler[id: 1118; name: POREC:to_pairs_file (207); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/f489925d5450bc84313fab2d77a740] ~> TaskHandler[id: 1119; name: POREC:to_pairs_file (208); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/fb9ea1a86a0292d97f6ff8a5deb693] ~> TaskHandler[id: 1120; name: POREC:to_pairs_file (209); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/592c938f7357841c45f7d03e45ad62] ~> TaskHandler[id: 1121; name: POREC:to_pairs_file (210); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7aab3e7a4876b0bf288d73b782abbd] .. remaining tasks omitted. Aug-18 04:17:37.085 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1111; name: POREC:to_pairs_file (200); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/616caba209a1f715f4288bb0dc4a33] Aug-18 04:17:37.091 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:17:37.091 [Task submitter] INFO nextflow.Session - [1f/e1f82a] Submitted process > POREC:to_pairs_file (201) Aug-18 04:18:48.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1112; name: POREC:to_pairs_file (201); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/e1f82a19887de42de12c5de0afdb7b] Aug-18 04:19:12.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1112; name: POREC:to_pairs_file (201); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/e1f82a19887de42de12c5de0afdb7b] Aug-18 04:19:12.575 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:19:12.575 [Task submitter] INFO nextflow.Session - [ef/868f4d] Submitted process > POREC:to_pairs_file (202) Aug-18 04:20:46.308 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1113; name: POREC:to_pairs_file (202); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ef/868f4da295260165abe2c8781d1d39] Aug-18 04:20:46.326 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:20:46.327 [Task submitter] INFO nextflow.Session - [c4/89636e] Submitted process > POREC:to_pairs_file (203) Aug-18 04:21:51.492 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 701 -- tasks to be submitted are shown below ~> TaskHandler[id: 1115; name: POREC:to_pairs_file (204); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/9cd28a23b0788d92b22a03f522717e] ~> TaskHandler[id: 1116; name: POREC:to_pairs_file (205); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/25aed8018cacfefade30c872eeaecc] ~> TaskHandler[id: 1117; name: POREC:to_pairs_file (206); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/068febe34d0dbe6a60f431c2f3f320] ~> TaskHandler[id: 1118; name: POREC:to_pairs_file (207); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/f489925d5450bc84313fab2d77a740] ~> TaskHandler[id: 1119; name: POREC:to_pairs_file (208); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/fb9ea1a86a0292d97f6ff8a5deb693] ~> TaskHandler[id: 1120; name: POREC:to_pairs_file (209); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/592c938f7357841c45f7d03e45ad62] ~> TaskHandler[id: 1121; name: POREC:to_pairs_file (210); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7aab3e7a4876b0bf288d73b782abbd] ~> TaskHandler[id: 1122; name: POREC:to_pairs_file (211); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/3d126c16271fee389cccc31f75f526] ~> TaskHandler[id: 1123; name: POREC:to_pairs_file (212); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/9309d0682d6685d93b3d2cef6675e7] ~> TaskHandler[id: 1124; name: POREC:to_pairs_file (213); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/e63fa4183795156ef054a4b3360009] .. remaining tasks omitted. Aug-18 04:22:22.947 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1114; name: POREC:to_pairs_file (203); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/89636e5af12d7f6067ccfc80653004] Aug-18 04:22:22.977 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:22:22.977 [Task submitter] INFO nextflow.Session - [48/9cd28a] Submitted process > POREC:to_pairs_file (204) Aug-18 04:23:48.544 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1115; name: POREC:to_pairs_file (204); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/9cd28a23b0788d92b22a03f522717e] Aug-18 04:23:57.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1115; name: POREC:to_pairs_file (204); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/9cd28a23b0788d92b22a03f522717e] Aug-18 04:23:57.246 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:23:57.246 [Task submitter] INFO nextflow.Session - [1e/25aed8] Submitted process > POREC:to_pairs_file (205) Aug-18 04:25:31.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1116; name: POREC:to_pairs_file (205); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/25aed8018cacfefade30c872eeaecc] Aug-18 04:25:31.523 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:25:31.524 [Task submitter] INFO nextflow.Session - [de/068feb] Submitted process > POREC:to_pairs_file (206) Aug-18 04:26:51.714 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 698 -- tasks to be submitted are shown below ~> TaskHandler[id: 1118; name: POREC:to_pairs_file (207); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/f489925d5450bc84313fab2d77a740] ~> TaskHandler[id: 1119; name: POREC:to_pairs_file (208); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/fb9ea1a86a0292d97f6ff8a5deb693] ~> TaskHandler[id: 1120; name: POREC:to_pairs_file (209); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/592c938f7357841c45f7d03e45ad62] ~> TaskHandler[id: 1121; name: POREC:to_pairs_file (210); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7aab3e7a4876b0bf288d73b782abbd] ~> TaskHandler[id: 1122; name: POREC:to_pairs_file (211); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/3d126c16271fee389cccc31f75f526] ~> TaskHandler[id: 1123; name: POREC:to_pairs_file (212); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/9309d0682d6685d93b3d2cef6675e7] ~> TaskHandler[id: 1124; name: POREC:to_pairs_file (213); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/e63fa4183795156ef054a4b3360009] ~> TaskHandler[id: 1125; name: POREC:to_pairs_file (214); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/7a4f8a00f844535a35806599ad9b6e] ~> TaskHandler[id: 1126; name: POREC:to_pairs_file (215); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/578ab6456c1a54ebcf727dcd1e9a67] ~> TaskHandler[id: 1127; name: POREC:to_pairs_file (216); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/d65d96229a165b24b5dfc34877290e] .. remaining tasks omitted. Aug-18 04:27:03.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1117; name: POREC:to_pairs_file (206); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/068febe34d0dbe6a60f431c2f3f320] Aug-18 04:27:03.514 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:27:03.514 [Task submitter] INFO nextflow.Session - [bb/f48992] Submitted process > POREC:to_pairs_file (207) Aug-18 04:28:39.954 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1118; name: POREC:to_pairs_file (207); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/f489925d5450bc84313fab2d77a740] Aug-18 04:28:39.972 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:28:39.973 [Task submitter] INFO nextflow.Session - [28/fb9ea1] Submitted process > POREC:to_pairs_file (208) Aug-18 04:28:48.608 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1119; name: POREC:to_pairs_file (208); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/fb9ea1a86a0292d97f6ff8a5deb693] Aug-18 04:30:15.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1119; name: POREC:to_pairs_file (208); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/fb9ea1a86a0292d97f6ff8a5deb693] Aug-18 04:30:15.969 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:30:15.969 [Task submitter] INFO nextflow.Session - [26/592c93] Submitted process > POREC:to_pairs_file (209) Aug-18 04:31:50.416 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1120; name: POREC:to_pairs_file (209); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/592c938f7357841c45f7d03e45ad62] Aug-18 04:31:50.420 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:31:50.420 [Task submitter] INFO nextflow.Session - [a3/7aab3e] Submitted process > POREC:to_pairs_file (210) Aug-18 04:31:52.448 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 694 -- tasks to be submitted are shown below ~> TaskHandler[id: 1122; name: POREC:to_pairs_file (211); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/3d126c16271fee389cccc31f75f526] ~> TaskHandler[id: 1123; name: POREC:to_pairs_file (212); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/9309d0682d6685d93b3d2cef6675e7] ~> TaskHandler[id: 1124; name: POREC:to_pairs_file (213); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/e63fa4183795156ef054a4b3360009] ~> TaskHandler[id: 1125; name: POREC:to_pairs_file (214); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/7a4f8a00f844535a35806599ad9b6e] ~> TaskHandler[id: 1126; name: POREC:to_pairs_file (215); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/578ab6456c1a54ebcf727dcd1e9a67] ~> TaskHandler[id: 1127; name: POREC:to_pairs_file (216); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/d65d96229a165b24b5dfc34877290e] ~> TaskHandler[id: 1128; name: POREC:to_pairs_file (217); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/21fdc79d60a7a19328c5df3253d2ab] ~> TaskHandler[id: 1129; name: POREC:to_pairs_file (218); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/2ca01ee7a0c7bab0d126ddfd3a93fe] ~> TaskHandler[id: 1130; name: POREC:to_pairs_file (219); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/015594c81e0c980170267229a9f1b4] ~> TaskHandler[id: 1131; name: POREC:to_pairs_file (220); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/13dbd58ed046f7c6c33840c381891e] .. remaining tasks omitted. Aug-18 04:33:21.518 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1121; name: POREC:to_pairs_file (210); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7aab3e7a4876b0bf288d73b782abbd] Aug-18 04:33:21.522 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:33:21.522 [Task submitter] INFO nextflow.Session - [57/3d126c] Submitted process > POREC:to_pairs_file (211) Aug-18 04:33:48.698 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1122; name: POREC:to_pairs_file (211); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/3d126c16271fee389cccc31f75f526] Aug-18 04:34:55.475 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1122; name: POREC:to_pairs_file (211); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/3d126c16271fee389cccc31f75f526] Aug-18 04:34:55.479 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:34:55.479 [Task submitter] INFO nextflow.Session - [9d/9309d0] Submitted process > POREC:to_pairs_file (212) Aug-18 04:36:27.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1123; name: POREC:to_pairs_file (212); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/9309d0682d6685d93b3d2cef6675e7] Aug-18 04:36:27.396 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:36:27.397 [Task submitter] INFO nextflow.Session - [c0/e63fa4] Submitted process > POREC:to_pairs_file (213) Aug-18 04:36:52.449 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 691 -- tasks to be submitted are shown below ~> TaskHandler[id: 1125; name: POREC:to_pairs_file (214); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/7a4f8a00f844535a35806599ad9b6e] ~> TaskHandler[id: 1126; name: POREC:to_pairs_file (215); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/578ab6456c1a54ebcf727dcd1e9a67] ~> TaskHandler[id: 1127; name: POREC:to_pairs_file (216); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/d65d96229a165b24b5dfc34877290e] ~> TaskHandler[id: 1128; name: POREC:to_pairs_file (217); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/21fdc79d60a7a19328c5df3253d2ab] ~> TaskHandler[id: 1129; name: POREC:to_pairs_file (218); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/2ca01ee7a0c7bab0d126ddfd3a93fe] ~> TaskHandler[id: 1130; name: POREC:to_pairs_file (219); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/015594c81e0c980170267229a9f1b4] ~> TaskHandler[id: 1131; name: POREC:to_pairs_file (220); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/13dbd58ed046f7c6c33840c381891e] ~> TaskHandler[id: 1132; name: POREC:to_pairs_file (221); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/1baee2c01f5c83f45335e67d5e76e0] ~> TaskHandler[id: 1133; name: POREC:to_pairs_file (222); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/bf3de161979ee6f59083ee2ff7046d] ~> TaskHandler[id: 1134; name: POREC:to_pairs_file (223); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/5285909e3f2f30fe8babf3fbf7ab2b] .. remaining tasks omitted. Aug-18 04:38:00.752 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1124; name: POREC:to_pairs_file (213); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/e63fa4183795156ef054a4b3360009] Aug-18 04:38:00.800 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:38:00.800 [Task submitter] INFO nextflow.Session - [93/7a4f8a] Submitted process > POREC:to_pairs_file (214) Aug-18 04:38:48.702 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1125; name: POREC:to_pairs_file (214); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/7a4f8a00f844535a35806599ad9b6e] Aug-18 04:39:35.950 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1125; name: POREC:to_pairs_file (214); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/7a4f8a00f844535a35806599ad9b6e] Aug-18 04:39:35.982 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:39:35.982 [Task submitter] INFO nextflow.Session - [c4/578ab6] Submitted process > POREC:to_pairs_file (215) Aug-18 04:41:11.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1126; name: POREC:to_pairs_file (215); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/578ab6456c1a54ebcf727dcd1e9a67] Aug-18 04:41:11.457 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:41:11.458 [Task submitter] INFO nextflow.Session - [c4/d65d96] Submitted process > POREC:to_pairs_file (216) Aug-18 04:41:52.543 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 688 -- tasks to be submitted are shown below ~> TaskHandler[id: 1128; name: POREC:to_pairs_file (217); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/21fdc79d60a7a19328c5df3253d2ab] ~> TaskHandler[id: 1129; name: POREC:to_pairs_file (218); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/2ca01ee7a0c7bab0d126ddfd3a93fe] ~> TaskHandler[id: 1130; name: POREC:to_pairs_file (219); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/015594c81e0c980170267229a9f1b4] ~> TaskHandler[id: 1131; name: POREC:to_pairs_file (220); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/13dbd58ed046f7c6c33840c381891e] ~> TaskHandler[id: 1132; name: POREC:to_pairs_file (221); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/1baee2c01f5c83f45335e67d5e76e0] ~> TaskHandler[id: 1133; name: POREC:to_pairs_file (222); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/bf3de161979ee6f59083ee2ff7046d] ~> TaskHandler[id: 1134; name: POREC:to_pairs_file (223); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/5285909e3f2f30fe8babf3fbf7ab2b] ~> TaskHandler[id: 1135; name: POREC:to_pairs_file (224); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/626e729d8b3c6e84efd7a815fa3ca4] ~> TaskHandler[id: 1136; name: POREC:to_pairs_file (225); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/c5df59e14606edc95b504c2941b260] ~> TaskHandler[id: 1137; name: POREC:to_pairs_file (226); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/b216e79531ec6d2ee7ad9598f2a842] .. remaining tasks omitted. Aug-18 04:42:44.903 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1127; name: POREC:to_pairs_file (216); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/d65d96229a165b24b5dfc34877290e] Aug-18 04:42:44.938 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:42:44.938 [Task submitter] INFO nextflow.Session - [70/21fdc7] Submitted process > POREC:to_pairs_file (217) Aug-18 04:43:48.780 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1128; name: POREC:to_pairs_file (217); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/21fdc79d60a7a19328c5df3253d2ab] Aug-18 04:44:21.590 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1128; name: POREC:to_pairs_file (217); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/21fdc79d60a7a19328c5df3253d2ab] Aug-18 04:44:21.599 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:44:21.599 [Task submitter] INFO nextflow.Session - [53/2ca01e] Submitted process > POREC:to_pairs_file (218) Aug-18 04:45:56.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1129; name: POREC:to_pairs_file (218); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/53/2ca01ee7a0c7bab0d126ddfd3a93fe] Aug-18 04:45:56.493 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:45:56.494 [Task submitter] INFO nextflow.Session - [d5/015594] Submitted process > POREC:to_pairs_file (219) Aug-18 04:46:52.612 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 685 -- tasks to be submitted are shown below ~> TaskHandler[id: 1131; name: POREC:to_pairs_file (220); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/13dbd58ed046f7c6c33840c381891e] ~> TaskHandler[id: 1132; name: POREC:to_pairs_file (221); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/1baee2c01f5c83f45335e67d5e76e0] ~> TaskHandler[id: 1133; name: POREC:to_pairs_file (222); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/bf3de161979ee6f59083ee2ff7046d] ~> TaskHandler[id: 1134; name: POREC:to_pairs_file (223); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/5285909e3f2f30fe8babf3fbf7ab2b] ~> TaskHandler[id: 1135; name: POREC:to_pairs_file (224); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/626e729d8b3c6e84efd7a815fa3ca4] ~> TaskHandler[id: 1136; name: POREC:to_pairs_file (225); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/c5df59e14606edc95b504c2941b260] ~> TaskHandler[id: 1137; name: POREC:to_pairs_file (226); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/b216e79531ec6d2ee7ad9598f2a842] ~> TaskHandler[id: 1138; name: POREC:to_pairs_file (227); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/673558068abb0e3e2c6482ac06961e] ~> TaskHandler[id: 1139; name: POREC:to_pairs_file (228); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/d748d4b0e6ac1480f249b15e2cb6ba] ~> TaskHandler[id: 1140; name: POREC:to_pairs_file (229); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/be33667d4da3330607285c5785a3b0] .. remaining tasks omitted. Aug-18 04:47:33.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1130; name: POREC:to_pairs_file (219); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/015594c81e0c980170267229a9f1b4] Aug-18 04:47:33.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:47:33.062 [Task submitter] INFO nextflow.Session - [52/13dbd5] Submitted process > POREC:to_pairs_file (220) Aug-18 04:48:48.867 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1131; name: POREC:to_pairs_file (220); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/13dbd58ed046f7c6c33840c381891e] Aug-18 04:49:08.045 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1131; name: POREC:to_pairs_file (220); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/13dbd58ed046f7c6c33840c381891e] Aug-18 04:49:08.073 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:49:08.073 [Task submitter] INFO nextflow.Session - [6c/1baee2] Submitted process > POREC:to_pairs_file (221) Aug-18 04:50:43.129 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1132; name: POREC:to_pairs_file (221); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/1baee2c01f5c83f45335e67d5e76e0] Aug-18 04:50:43.167 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:50:43.167 [Task submitter] INFO nextflow.Session - [4d/bf3de1] Submitted process > POREC:to_pairs_file (222) Aug-18 04:51:53.337 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 682 -- tasks to be submitted are shown below ~> TaskHandler[id: 1134; name: POREC:to_pairs_file (223); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/5285909e3f2f30fe8babf3fbf7ab2b] ~> TaskHandler[id: 1135; name: POREC:to_pairs_file (224); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/626e729d8b3c6e84efd7a815fa3ca4] ~> TaskHandler[id: 1136; name: POREC:to_pairs_file (225); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/c5df59e14606edc95b504c2941b260] ~> TaskHandler[id: 1137; name: POREC:to_pairs_file (226); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/b216e79531ec6d2ee7ad9598f2a842] ~> TaskHandler[id: 1138; name: POREC:to_pairs_file (227); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/673558068abb0e3e2c6482ac06961e] ~> TaskHandler[id: 1139; name: POREC:to_pairs_file (228); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/d748d4b0e6ac1480f249b15e2cb6ba] ~> TaskHandler[id: 1140; name: POREC:to_pairs_file (229); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/be33667d4da3330607285c5785a3b0] ~> TaskHandler[id: 1141; name: POREC:to_pairs_file (230); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/cb8501c72355127e6a10e76db1f1f0] ~> TaskHandler[id: 1142; name: POREC:to_pairs_file (231); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/35135b937815089f424ba6affa2e55] ~> TaskHandler[id: 1143; name: POREC:to_pairs_file (232); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/27b8fb3f03cb114a4cb6be7c87c1de] .. remaining tasks omitted. Aug-18 04:52:16.575 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1133; name: POREC:to_pairs_file (222); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/bf3de161979ee6f59083ee2ff7046d] Aug-18 04:52:16.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:52:16.579 [Task submitter] INFO nextflow.Session - [8a/528590] Submitted process > POREC:to_pairs_file (223) Aug-18 04:53:47.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1134; name: POREC:to_pairs_file (223); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/5285909e3f2f30fe8babf3fbf7ab2b] Aug-18 04:53:47.220 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:53:47.220 [Task submitter] INFO nextflow.Session - [38/626e72] Submitted process > POREC:to_pairs_file (224) Aug-18 04:53:48.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1135; name: POREC:to_pairs_file (224); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/626e729d8b3c6e84efd7a815fa3ca4] Aug-18 04:55:15.292 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1135; name: POREC:to_pairs_file (224); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/626e729d8b3c6e84efd7a815fa3ca4] Aug-18 04:55:15.298 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:55:15.298 [Task submitter] INFO nextflow.Session - [ea/c5df59] Submitted process > POREC:to_pairs_file (225) Aug-18 04:56:50.517 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1136; name: POREC:to_pairs_file (225); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/c5df59e14606edc95b504c2941b260] Aug-18 04:56:50.570 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:56:50.570 [Task submitter] INFO nextflow.Session - [34/b216e7] Submitted process > POREC:to_pairs_file (226) Aug-18 04:56:53.581 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 678 -- tasks to be submitted are shown below ~> TaskHandler[id: 1138; name: POREC:to_pairs_file (227); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/673558068abb0e3e2c6482ac06961e] ~> TaskHandler[id: 1139; name: POREC:to_pairs_file (228); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/d748d4b0e6ac1480f249b15e2cb6ba] ~> TaskHandler[id: 1140; name: POREC:to_pairs_file (229); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/be33667d4da3330607285c5785a3b0] ~> TaskHandler[id: 1141; name: POREC:to_pairs_file (230); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/cb8501c72355127e6a10e76db1f1f0] ~> TaskHandler[id: 1142; name: POREC:to_pairs_file (231); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/35135b937815089f424ba6affa2e55] ~> TaskHandler[id: 1143; name: POREC:to_pairs_file (232); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/27b8fb3f03cb114a4cb6be7c87c1de] ~> TaskHandler[id: 1144; name: POREC:to_pairs_file (233); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/8f941f381f732eb96cf295e3cff08e] ~> TaskHandler[id: 1145; name: POREC:to_pairs_file (234); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/031123e3f3aa9998ba4befd141ae1f] ~> TaskHandler[id: 1146; name: POREC:to_pairs_file (235); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/b48011529fcad259c67ee63bc703a0] ~> TaskHandler[id: 1147; name: POREC:to_pairs_file (236); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/660b800f90dc21c07e250fc291a1a6] .. remaining tasks omitted. Aug-18 04:58:25.038 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1137; name: POREC:to_pairs_file (226); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/34/b216e79531ec6d2ee7ad9598f2a842] Aug-18 04:58:25.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:58:25.062 [Task submitter] INFO nextflow.Session - [ab/673558] Submitted process > POREC:to_pairs_file (227) Aug-18 04:58:49.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1138; name: POREC:to_pairs_file (227); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/673558068abb0e3e2c6482ac06961e] Aug-18 04:59:59.764 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1138; name: POREC:to_pairs_file (227); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/673558068abb0e3e2c6482ac06961e] Aug-18 04:59:59.807 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 04:59:59.807 [Task submitter] INFO nextflow.Session - [48/d748d4] Submitted process > POREC:to_pairs_file (228) Aug-18 05:01:32.661 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1139; name: POREC:to_pairs_file (228); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/d748d4b0e6ac1480f249b15e2cb6ba] Aug-18 05:01:32.687 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:01:32.687 [Task submitter] INFO nextflow.Session - [ff/be3366] Submitted process > POREC:to_pairs_file (229) Aug-18 05:01:53.744 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 675 -- tasks to be submitted are shown below ~> TaskHandler[id: 1141; name: POREC:to_pairs_file (230); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/cb8501c72355127e6a10e76db1f1f0] ~> TaskHandler[id: 1142; name: POREC:to_pairs_file (231); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/35135b937815089f424ba6affa2e55] ~> TaskHandler[id: 1143; name: POREC:to_pairs_file (232); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/27b8fb3f03cb114a4cb6be7c87c1de] ~> TaskHandler[id: 1144; name: POREC:to_pairs_file (233); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/8f941f381f732eb96cf295e3cff08e] ~> TaskHandler[id: 1145; name: POREC:to_pairs_file (234); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/031123e3f3aa9998ba4befd141ae1f] ~> TaskHandler[id: 1146; name: POREC:to_pairs_file (235); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/b48011529fcad259c67ee63bc703a0] ~> TaskHandler[id: 1147; name: POREC:to_pairs_file (236); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/660b800f90dc21c07e250fc291a1a6] ~> TaskHandler[id: 1148; name: POREC:to_pairs_file (237); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/d00826fed8063c891e1d65d7a531c5] ~> TaskHandler[id: 1149; name: POREC:to_pairs_file (238); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/f99961ab0f13e82eeda6ba08ac3488] ~> TaskHandler[id: 1150; name: POREC:to_pairs_file (239); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2510e84d1f176ab320196c0000b42f] .. remaining tasks omitted. Aug-18 05:03:05.764 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1140; name: POREC:to_pairs_file (229); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/be33667d4da3330607285c5785a3b0] Aug-18 05:03:05.771 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:03:05.771 [Task submitter] INFO nextflow.Session - [4b/cb8501] Submitted process > POREC:to_pairs_file (230) Aug-18 05:03:49.088 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1141; name: POREC:to_pairs_file (230); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/cb8501c72355127e6a10e76db1f1f0] Aug-18 05:04:41.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1141; name: POREC:to_pairs_file (230); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/cb8501c72355127e6a10e76db1f1f0] Aug-18 05:04:41.716 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:04:41.716 [Task submitter] INFO nextflow.Session - [97/35135b] Submitted process > POREC:to_pairs_file (231) Aug-18 05:06:16.590 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1142; name: POREC:to_pairs_file (231); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/35135b937815089f424ba6affa2e55] Aug-18 05:06:16.594 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:06:16.602 [Task submitter] INFO nextflow.Session - [bc/27b8fb] Submitted process > POREC:to_pairs_file (232) Aug-18 05:06:54.691 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 672 -- tasks to be submitted are shown below ~> TaskHandler[id: 1144; name: POREC:to_pairs_file (233); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/8f941f381f732eb96cf295e3cff08e] ~> TaskHandler[id: 1145; name: POREC:to_pairs_file (234); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/031123e3f3aa9998ba4befd141ae1f] ~> TaskHandler[id: 1146; name: POREC:to_pairs_file (235); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/b48011529fcad259c67ee63bc703a0] ~> TaskHandler[id: 1147; name: POREC:to_pairs_file (236); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/660b800f90dc21c07e250fc291a1a6] ~> TaskHandler[id: 1148; name: POREC:to_pairs_file (237); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/d00826fed8063c891e1d65d7a531c5] ~> TaskHandler[id: 1149; name: POREC:to_pairs_file (238); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/f99961ab0f13e82eeda6ba08ac3488] ~> TaskHandler[id: 1150; name: POREC:to_pairs_file (239); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2510e84d1f176ab320196c0000b42f] ~> TaskHandler[id: 1151; name: POREC:to_pairs_file (240); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/797e92f8b4747dc8958aa8dd97ac08] ~> TaskHandler[id: 1152; name: POREC:to_pairs_file (241); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/f2a750e0a86c6ecc57207b55b67726] ~> TaskHandler[id: 1153; name: POREC:to_pairs_file (242); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/b13857d6ae4b959fb02ea79b7bc474] .. remaining tasks omitted. Aug-18 05:07:51.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1143; name: POREC:to_pairs_file (232); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/27b8fb3f03cb114a4cb6be7c87c1de] Aug-18 05:07:51.576 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:07:51.576 [Task submitter] INFO nextflow.Session - [6d/8f941f] Submitted process > POREC:to_pairs_file (233) Aug-18 05:08:49.162 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1144; name: POREC:to_pairs_file (233); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/8f941f381f732eb96cf295e3cff08e] Aug-18 05:09:25.823 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1144; name: POREC:to_pairs_file (233); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/8f941f381f732eb96cf295e3cff08e] Aug-18 05:09:25.835 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:09:25.857 [Task submitter] INFO nextflow.Session - [8c/031123] Submitted process > POREC:to_pairs_file (234) Aug-18 05:11:01.826 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1145; name: POREC:to_pairs_file (234); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/031123e3f3aa9998ba4befd141ae1f] Aug-18 05:11:01.830 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:11:01.854 [Task submitter] INFO nextflow.Session - [f3/b48011] Submitted process > POREC:to_pairs_file (235) Aug-18 05:11:54.976 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 669 -- tasks to be submitted are shown below ~> TaskHandler[id: 1147; name: POREC:to_pairs_file (236); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/660b800f90dc21c07e250fc291a1a6] ~> TaskHandler[id: 1148; name: POREC:to_pairs_file (237); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/d00826fed8063c891e1d65d7a531c5] ~> TaskHandler[id: 1149; name: POREC:to_pairs_file (238); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/f99961ab0f13e82eeda6ba08ac3488] ~> TaskHandler[id: 1150; name: POREC:to_pairs_file (239); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2510e84d1f176ab320196c0000b42f] ~> TaskHandler[id: 1151; name: POREC:to_pairs_file (240); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/797e92f8b4747dc8958aa8dd97ac08] ~> TaskHandler[id: 1152; name: POREC:to_pairs_file (241); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/f2a750e0a86c6ecc57207b55b67726] ~> TaskHandler[id: 1153; name: POREC:to_pairs_file (242); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/b13857d6ae4b959fb02ea79b7bc474] ~> TaskHandler[id: 1154; name: POREC:to_pairs_file (243); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/597f7a60d81298c0c95d934165c256] ~> TaskHandler[id: 1155; name: POREC:to_pairs_file (244); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/4fe14fde73ad248f3e13d48c1a8da0] ~> TaskHandler[id: 1156; name: POREC:to_pairs_file (245); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/365b6041b06d1f9805ad0ab3dd2dee] .. remaining tasks omitted. Aug-18 05:12:38.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1146; name: POREC:to_pairs_file (235); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f3/b48011529fcad259c67ee63bc703a0] Aug-18 05:12:38.348 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:12:38.348 [Task submitter] INFO nextflow.Session - [1d/660b80] Submitted process > POREC:to_pairs_file (236) Aug-18 05:13:49.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1147; name: POREC:to_pairs_file (236); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/660b800f90dc21c07e250fc291a1a6] Aug-18 05:14:12.687 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1147; name: POREC:to_pairs_file (236); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/660b800f90dc21c07e250fc291a1a6] Aug-18 05:14:12.722 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:14:12.722 [Task submitter] INFO nextflow.Session - [c9/d00826] Submitted process > POREC:to_pairs_file (237) Aug-18 05:15:47.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1148; name: POREC:to_pairs_file (237); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/d00826fed8063c891e1d65d7a531c5] Aug-18 05:15:47.585 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:15:47.606 [Task submitter] INFO nextflow.Session - [23/f99961] Submitted process > POREC:to_pairs_file (238) Aug-18 05:16:55.792 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 666 -- tasks to be submitted are shown below ~> TaskHandler[id: 1150; name: POREC:to_pairs_file (239); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2510e84d1f176ab320196c0000b42f] ~> TaskHandler[id: 1151; name: POREC:to_pairs_file (240); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/797e92f8b4747dc8958aa8dd97ac08] ~> TaskHandler[id: 1152; name: POREC:to_pairs_file (241); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/f2a750e0a86c6ecc57207b55b67726] ~> TaskHandler[id: 1153; name: POREC:to_pairs_file (242); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/b13857d6ae4b959fb02ea79b7bc474] ~> TaskHandler[id: 1154; name: POREC:to_pairs_file (243); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/597f7a60d81298c0c95d934165c256] ~> TaskHandler[id: 1155; name: POREC:to_pairs_file (244); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/4fe14fde73ad248f3e13d48c1a8da0] ~> TaskHandler[id: 1156; name: POREC:to_pairs_file (245); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/365b6041b06d1f9805ad0ab3dd2dee] ~> TaskHandler[id: 1157; name: POREC:to_pairs_file (246); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/82a051ac1e1bb2992a23be6809a173] ~> TaskHandler[id: 1158; name: POREC:to_pairs_file (247); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4870046cb436c8af6b3d6049ba5be3] ~> TaskHandler[id: 1159; name: POREC:to_pairs_file (248); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/6982ca8e20211a418bc067edade74b] .. remaining tasks omitted. Aug-18 05:17:24.218 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1149; name: POREC:to_pairs_file (238); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/f99961ab0f13e82eeda6ba08ac3488] Aug-18 05:17:24.223 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:17:24.223 [Task submitter] INFO nextflow.Session - [fe/2510e8] Submitted process > POREC:to_pairs_file (239) Aug-18 05:18:49.276 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1150; name: POREC:to_pairs_file (239); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2510e84d1f176ab320196c0000b42f] Aug-18 05:18:57.740 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1150; name: POREC:to_pairs_file (239); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/2510e84d1f176ab320196c0000b42f] Aug-18 05:18:57.744 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:18:57.745 [Task submitter] INFO nextflow.Session - [d4/797e92] Submitted process > POREC:to_pairs_file (240) Aug-18 05:20:33.133 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1151; name: POREC:to_pairs_file (240); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/797e92f8b4747dc8958aa8dd97ac08] Aug-18 05:20:33.153 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:20:33.153 [Task submitter] INFO nextflow.Session - [1a/f2a750] Submitted process > POREC:to_pairs_file (241) Aug-18 05:21:56.357 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 663 -- tasks to be submitted are shown below ~> TaskHandler[id: 1153; name: POREC:to_pairs_file (242); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/b13857d6ae4b959fb02ea79b7bc474] ~> TaskHandler[id: 1154; name: POREC:to_pairs_file (243); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/597f7a60d81298c0c95d934165c256] ~> TaskHandler[id: 1155; name: POREC:to_pairs_file (244); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/4fe14fde73ad248f3e13d48c1a8da0] ~> TaskHandler[id: 1156; name: POREC:to_pairs_file (245); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/365b6041b06d1f9805ad0ab3dd2dee] ~> TaskHandler[id: 1157; name: POREC:to_pairs_file (246); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/82a051ac1e1bb2992a23be6809a173] ~> TaskHandler[id: 1158; name: POREC:to_pairs_file (247); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4870046cb436c8af6b3d6049ba5be3] ~> TaskHandler[id: 1159; name: POREC:to_pairs_file (248); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/6982ca8e20211a418bc067edade74b] ~> TaskHandler[id: 1160; name: POREC:to_pairs_file (249); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/13c996df0838e706c782a85be0a5a4] ~> TaskHandler[id: 1161; name: POREC:to_pairs_file (250); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/8b73bb32f5c00a1682707531134a32] ~> TaskHandler[id: 1162; name: POREC:to_pairs_file (251); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/fd2e19a33b31902f360233b8220058] .. remaining tasks omitted. Aug-18 05:22:07.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1152; name: POREC:to_pairs_file (241); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1a/f2a750e0a86c6ecc57207b55b67726] Aug-18 05:22:07.555 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:22:07.555 [Task submitter] INFO nextflow.Session - [dd/b13857] Submitted process > POREC:to_pairs_file (242) Aug-18 05:23:42.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1153; name: POREC:to_pairs_file (242); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/b13857d6ae4b959fb02ea79b7bc474] Aug-18 05:23:42.236 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:23:42.236 [Task submitter] INFO nextflow.Session - [37/597f7a] Submitted process > POREC:to_pairs_file (243) Aug-18 05:23:49.283 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1154; name: POREC:to_pairs_file (243); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/597f7a60d81298c0c95d934165c256] Aug-18 05:25:17.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1154; name: POREC:to_pairs_file (243); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/597f7a60d81298c0c95d934165c256] Aug-18 05:25:17.332 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:25:17.332 [Task submitter] INFO nextflow.Session - [74/4fe14f] Submitted process > POREC:to_pairs_file (244) Aug-18 05:26:51.113 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1155; name: POREC:to_pairs_file (244); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/4fe14fde73ad248f3e13d48c1a8da0] Aug-18 05:26:51.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:26:51.120 [Task submitter] INFO nextflow.Session - [73/365b60] Submitted process > POREC:to_pairs_file (245) Aug-18 05:26:57.134 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 659 -- tasks to be submitted are shown below ~> TaskHandler[id: 1157; name: POREC:to_pairs_file (246); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/82a051ac1e1bb2992a23be6809a173] ~> TaskHandler[id: 1158; name: POREC:to_pairs_file (247); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4870046cb436c8af6b3d6049ba5be3] ~> TaskHandler[id: 1159; name: POREC:to_pairs_file (248); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/6982ca8e20211a418bc067edade74b] ~> TaskHandler[id: 1160; name: POREC:to_pairs_file (249); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/13c996df0838e706c782a85be0a5a4] ~> TaskHandler[id: 1161; name: POREC:to_pairs_file (250); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/8b73bb32f5c00a1682707531134a32] ~> TaskHandler[id: 1162; name: POREC:to_pairs_file (251); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/fd2e19a33b31902f360233b8220058] ~> TaskHandler[id: 1163; name: POREC:to_pairs_file (252); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/f0ec706ff113d00ed38397ce5b02d3] ~> TaskHandler[id: 1164; name: POREC:to_pairs_file (253); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/61c4bca2ae1125d6706eca909c659d] ~> TaskHandler[id: 1165; name: POREC:to_pairs_file (254); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/2fe41b6351f668f8e629c484ae327f] ~> TaskHandler[id: 1166; name: POREC:to_pairs_file (255); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/e9462d0c6b83941f41649d70ae9869] .. remaining tasks omitted. Aug-18 05:28:25.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1156; name: POREC:to_pairs_file (245); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/365b6041b06d1f9805ad0ab3dd2dee] Aug-18 05:28:25.573 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:28:25.573 [Task submitter] INFO nextflow.Session - [4b/82a051] Submitted process > POREC:to_pairs_file (246) Aug-18 05:28:49.341 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1157; name: POREC:to_pairs_file (246); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/82a051ac1e1bb2992a23be6809a173] Aug-18 05:29:58.341 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1157; name: POREC:to_pairs_file (246); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/82a051ac1e1bb2992a23be6809a173] Aug-18 05:29:58.367 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:29:58.367 [Task submitter] INFO nextflow.Session - [63/487004] Submitted process > POREC:to_pairs_file (247) Aug-18 05:31:32.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1158; name: POREC:to_pairs_file (247); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4870046cb436c8af6b3d6049ba5be3] Aug-18 05:31:32.160 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:31:32.160 [Task submitter] INFO nextflow.Session - [e1/6982ca] Submitted process > POREC:to_pairs_file (248) Aug-18 05:31:57.247 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 656 -- tasks to be submitted are shown below ~> TaskHandler[id: 1160; name: POREC:to_pairs_file (249); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/13c996df0838e706c782a85be0a5a4] ~> TaskHandler[id: 1161; name: POREC:to_pairs_file (250); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/8b73bb32f5c00a1682707531134a32] ~> TaskHandler[id: 1162; name: POREC:to_pairs_file (251); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/fd2e19a33b31902f360233b8220058] ~> TaskHandler[id: 1163; name: POREC:to_pairs_file (252); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/f0ec706ff113d00ed38397ce5b02d3] ~> TaskHandler[id: 1164; name: POREC:to_pairs_file (253); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/61c4bca2ae1125d6706eca909c659d] ~> TaskHandler[id: 1165; name: POREC:to_pairs_file (254); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/2fe41b6351f668f8e629c484ae327f] ~> TaskHandler[id: 1166; name: POREC:to_pairs_file (255); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/e9462d0c6b83941f41649d70ae9869] ~> TaskHandler[id: 1167; name: POREC:to_pairs_file (256); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/771ceb7aef984ae910a8194703961d] ~> TaskHandler[id: 1168; name: POREC:to_pairs_file (257); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/2cee98851f2cf524282c94de0935c6] ~> TaskHandler[id: 1169; name: POREC:to_pairs_file (258); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/7937bf853c0dd17b5fc9c343cbfd7c] .. remaining tasks omitted. Aug-18 05:33:06.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1159; name: POREC:to_pairs_file (248); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/6982ca8e20211a418bc067edade74b] Aug-18 05:33:06.516 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:33:06.516 [Task submitter] INFO nextflow.Session - [0b/13c996] Submitted process > POREC:to_pairs_file (249) Aug-18 05:33:49.418 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1160; name: POREC:to_pairs_file (249); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/13c996df0838e706c782a85be0a5a4] Aug-18 05:34:39.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1160; name: POREC:to_pairs_file (249); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/13c996df0838e706c782a85be0a5a4] Aug-18 05:34:39.911 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:34:39.911 [Task submitter] INFO nextflow.Session - [c8/8b73bb] Submitted process > POREC:to_pairs_file (250) Aug-18 05:36:17.081 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1161; name: POREC:to_pairs_file (250); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/8b73bb32f5c00a1682707531134a32] Aug-18 05:36:17.096 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:36:17.096 [Task submitter] INFO nextflow.Session - [ff/fd2e19] Submitted process > POREC:to_pairs_file (251) Aug-18 05:36:58.188 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 653 -- tasks to be submitted are shown below ~> TaskHandler[id: 1163; name: POREC:to_pairs_file (252); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/f0ec706ff113d00ed38397ce5b02d3] ~> TaskHandler[id: 1164; name: POREC:to_pairs_file (253); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/61c4bca2ae1125d6706eca909c659d] ~> TaskHandler[id: 1165; name: POREC:to_pairs_file (254); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/2fe41b6351f668f8e629c484ae327f] ~> TaskHandler[id: 1166; name: POREC:to_pairs_file (255); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/e9462d0c6b83941f41649d70ae9869] ~> TaskHandler[id: 1167; name: POREC:to_pairs_file (256); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/771ceb7aef984ae910a8194703961d] ~> TaskHandler[id: 1168; name: POREC:to_pairs_file (257); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/2cee98851f2cf524282c94de0935c6] ~> TaskHandler[id: 1169; name: POREC:to_pairs_file (258); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/7937bf853c0dd17b5fc9c343cbfd7c] ~> TaskHandler[id: 1170; name: POREC:to_pairs_file (259); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/e9b6b0fceb1d45f397a39a7eb16179] ~> TaskHandler[id: 1171; name: POREC:to_pairs_file (260); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/3a84a9c39cc382469fd00ce9615f31] ~> TaskHandler[id: 1172; name: POREC:to_pairs_file (261); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/ef53b91894d6df31594e97baa4a2de] .. remaining tasks omitted. Aug-18 05:37:51.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1162; name: POREC:to_pairs_file (251); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/fd2e19a33b31902f360233b8220058] Aug-18 05:37:51.821 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:37:51.821 [Task submitter] INFO nextflow.Session - [ab/f0ec70] Submitted process > POREC:to_pairs_file (252) Aug-18 05:38:49.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1163; name: POREC:to_pairs_file (252); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/f0ec706ff113d00ed38397ce5b02d3] Aug-18 05:39:26.445 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1163; name: POREC:to_pairs_file (252); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ab/f0ec706ff113d00ed38397ce5b02d3] Aug-18 05:39:26.491 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:39:26.492 [Task submitter] INFO nextflow.Session - [14/61c4bc] Submitted process > POREC:to_pairs_file (253) Aug-18 05:41:00.013 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1164; name: POREC:to_pairs_file (253); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/61c4bca2ae1125d6706eca909c659d] Aug-18 05:41:00.084 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:41:00.084 [Task submitter] INFO nextflow.Session - [06/2fe41b] Submitted process > POREC:to_pairs_file (254) Aug-18 05:41:58.192 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 650 -- tasks to be submitted are shown below ~> TaskHandler[id: 1166; name: POREC:to_pairs_file (255); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/e9462d0c6b83941f41649d70ae9869] ~> TaskHandler[id: 1167; name: POREC:to_pairs_file (256); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/771ceb7aef984ae910a8194703961d] ~> TaskHandler[id: 1168; name: POREC:to_pairs_file (257); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/2cee98851f2cf524282c94de0935c6] ~> TaskHandler[id: 1169; name: POREC:to_pairs_file (258); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/7937bf853c0dd17b5fc9c343cbfd7c] ~> TaskHandler[id: 1170; name: POREC:to_pairs_file (259); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/e9b6b0fceb1d45f397a39a7eb16179] ~> TaskHandler[id: 1171; name: POREC:to_pairs_file (260); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/3a84a9c39cc382469fd00ce9615f31] ~> TaskHandler[id: 1172; name: POREC:to_pairs_file (261); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/ef53b91894d6df31594e97baa4a2de] ~> TaskHandler[id: 1173; name: POREC:to_pairs_file (262); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cb1d15f607b5bce6cec3319f356d27] ~> TaskHandler[id: 1174; name: POREC:to_pairs_file (263); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/24a1d5b7d1156973aa14955270bda9] ~> TaskHandler[id: 1175; name: POREC:to_pairs_file (264); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/df460b3545910aaf3ae2ce637e7af5] .. remaining tasks omitted. Aug-18 05:42:35.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1165; name: POREC:to_pairs_file (254); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/2fe41b6351f668f8e629c484ae327f] Aug-18 05:42:35.162 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:42:35.162 [Task submitter] INFO nextflow.Session - [4c/e9462d] Submitted process > POREC:to_pairs_file (255) Aug-18 05:43:49.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1166; name: POREC:to_pairs_file (255); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/e9462d0c6b83941f41649d70ae9869] Aug-18 05:44:08.696 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1166; name: POREC:to_pairs_file (255); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/e9462d0c6b83941f41649d70ae9869] Aug-18 05:44:08.723 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:44:08.723 [Task submitter] INFO nextflow.Session - [1c/771ceb] Submitted process > POREC:to_pairs_file (256) Aug-18 05:45:43.780 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1167; name: POREC:to_pairs_file (256); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/771ceb7aef984ae910a8194703961d] Aug-18 05:45:43.837 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:45:43.838 [Task submitter] INFO nextflow.Session - [c3/2cee98] Submitted process > POREC:to_pairs_file (257) Aug-18 05:46:58.982 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 647 -- tasks to be submitted are shown below ~> TaskHandler[id: 1169; name: POREC:to_pairs_file (258); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/7937bf853c0dd17b5fc9c343cbfd7c] ~> TaskHandler[id: 1170; name: POREC:to_pairs_file (259); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/e9b6b0fceb1d45f397a39a7eb16179] ~> TaskHandler[id: 1171; name: POREC:to_pairs_file (260); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/3a84a9c39cc382469fd00ce9615f31] ~> TaskHandler[id: 1172; name: POREC:to_pairs_file (261); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/ef53b91894d6df31594e97baa4a2de] ~> TaskHandler[id: 1173; name: POREC:to_pairs_file (262); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cb1d15f607b5bce6cec3319f356d27] ~> TaskHandler[id: 1174; name: POREC:to_pairs_file (263); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/24a1d5b7d1156973aa14955270bda9] ~> TaskHandler[id: 1175; name: POREC:to_pairs_file (264); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/df460b3545910aaf3ae2ce637e7af5] ~> TaskHandler[id: 1176; name: POREC:to_pairs_file (265); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/0b0904f2ef9805f4dda8af97636afb] ~> TaskHandler[id: 1177; name: POREC:to_pairs_file (266); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/70281d756365660387121b58e62cbd] ~> TaskHandler[id: 1178; name: POREC:to_pairs_file (267); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/7166580dfe52ae17043daaa5f83685] .. remaining tasks omitted. Aug-18 05:47:18.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1168; name: POREC:to_pairs_file (257); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/2cee98851f2cf524282c94de0935c6] Aug-18 05:47:18.074 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:47:18.074 [Task submitter] INFO nextflow.Session - [e4/7937bf] Submitted process > POREC:to_pairs_file (258) Aug-18 05:48:49.636 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1169; name: POREC:to_pairs_file (258); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/7937bf853c0dd17b5fc9c343cbfd7c] Aug-18 05:48:51.073 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1169; name: POREC:to_pairs_file (258); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/7937bf853c0dd17b5fc9c343cbfd7c] Aug-18 05:48:51.107 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:48:51.107 [Task submitter] INFO nextflow.Session - [2e/e9b6b0] Submitted process > POREC:to_pairs_file (259) Aug-18 05:50:23.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1170; name: POREC:to_pairs_file (259); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/e9b6b0fceb1d45f397a39a7eb16179] Aug-18 05:50:23.951 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:50:23.951 [Task submitter] INFO nextflow.Session - [b3/3a84a9] Submitted process > POREC:to_pairs_file (260) Aug-18 05:51:56.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1171; name: POREC:to_pairs_file (260); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/3a84a9c39cc382469fd00ce9615f31] Aug-18 05:51:56.517 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:51:56.517 [Task submitter] INFO nextflow.Session - [c2/ef53b9] Submitted process > POREC:to_pairs_file (261) Aug-18 05:51:59.555 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 643 -- tasks to be submitted are shown below ~> TaskHandler[id: 1173; name: POREC:to_pairs_file (262); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cb1d15f607b5bce6cec3319f356d27] ~> TaskHandler[id: 1174; name: POREC:to_pairs_file (263); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/24a1d5b7d1156973aa14955270bda9] ~> TaskHandler[id: 1175; name: POREC:to_pairs_file (264); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/df460b3545910aaf3ae2ce637e7af5] ~> TaskHandler[id: 1176; name: POREC:to_pairs_file (265); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/0b0904f2ef9805f4dda8af97636afb] ~> TaskHandler[id: 1177; name: POREC:to_pairs_file (266); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/70281d756365660387121b58e62cbd] ~> TaskHandler[id: 1178; name: POREC:to_pairs_file (267); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/7166580dfe52ae17043daaa5f83685] ~> TaskHandler[id: 1179; name: POREC:to_pairs_file (268); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/ea835d99762eff63d3a52897bd6864] ~> TaskHandler[id: 1180; name: POREC:to_pairs_file (269); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/4c1a7680b0b1ae265bba178d0bfd12] ~> TaskHandler[id: 1181; name: POREC:to_pairs_file (270); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/d2431992bc484d7449814a49a608c7] ~> TaskHandler[id: 1182; name: POREC:to_pairs_file (271); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/5a379b6fe60241781f67bf29cc8324] .. remaining tasks omitted. Aug-18 05:53:30.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1172; name: POREC:to_pairs_file (261); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/ef53b91894d6df31594e97baa4a2de] Aug-18 05:53:30.423 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:53:30.423 [Task submitter] INFO nextflow.Session - [9c/cb1d15] Submitted process > POREC:to_pairs_file (262) Aug-18 05:53:49.724 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1173; name: POREC:to_pairs_file (262); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cb1d15f607b5bce6cec3319f356d27] Aug-18 05:55:03.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1173; name: POREC:to_pairs_file (262); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/cb1d15f607b5bce6cec3319f356d27] Aug-18 05:55:03.523 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:55:03.523 [Task submitter] INFO nextflow.Session - [d8/24a1d5] Submitted process > POREC:to_pairs_file (263) Aug-18 05:56:38.377 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1174; name: POREC:to_pairs_file (263); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/24a1d5b7d1156973aa14955270bda9] Aug-18 05:56:38.385 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:56:38.385 [Task submitter] INFO nextflow.Session - [8f/df460b] Submitted process > POREC:to_pairs_file (264) Aug-18 05:57:00.428 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 640 -- tasks to be submitted are shown below ~> TaskHandler[id: 1176; name: POREC:to_pairs_file (265); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/0b0904f2ef9805f4dda8af97636afb] ~> TaskHandler[id: 1177; name: POREC:to_pairs_file (266); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/70281d756365660387121b58e62cbd] ~> TaskHandler[id: 1178; name: POREC:to_pairs_file (267); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/7166580dfe52ae17043daaa5f83685] ~> TaskHandler[id: 1179; name: POREC:to_pairs_file (268); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/ea835d99762eff63d3a52897bd6864] ~> TaskHandler[id: 1180; name: POREC:to_pairs_file (269); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/4c1a7680b0b1ae265bba178d0bfd12] ~> TaskHandler[id: 1181; name: POREC:to_pairs_file (270); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/d2431992bc484d7449814a49a608c7] ~> TaskHandler[id: 1182; name: POREC:to_pairs_file (271); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/5a379b6fe60241781f67bf29cc8324] ~> TaskHandler[id: 1183; name: POREC:to_pairs_file (272); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7efed1e8521d0e2d4b0eff4e44f3ab] ~> TaskHandler[id: 1184; name: POREC:to_pairs_file (273); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/28478ef3b12841746e3c0118f7f83a] ~> TaskHandler[id: 1185; name: POREC:to_pairs_file (274); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/564311d27d426753358987a1ce519d] .. remaining tasks omitted. Aug-18 05:58:12.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1175; name: POREC:to_pairs_file (264); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/df460b3545910aaf3ae2ce637e7af5] Aug-18 05:58:12.401 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:58:12.401 [Task submitter] INFO nextflow.Session - [87/0b0904] Submitted process > POREC:to_pairs_file (265) Aug-18 05:58:49.769 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1176; name: POREC:to_pairs_file (265); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/0b0904f2ef9805f4dda8af97636afb] Aug-18 05:59:46.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1176; name: POREC:to_pairs_file (265); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/0b0904f2ef9805f4dda8af97636afb] Aug-18 05:59:46.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 05:59:46.234 [Task submitter] INFO nextflow.Session - [98/70281d] Submitted process > POREC:to_pairs_file (266) Aug-18 06:01:20.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1177; name: POREC:to_pairs_file (266); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/98/70281d756365660387121b58e62cbd] Aug-18 06:01:20.956 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:01:20.956 [Task submitter] INFO nextflow.Session - [7c/716658] Submitted process > POREC:to_pairs_file (267) Aug-18 06:02:01.028 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 637 -- tasks to be submitted are shown below ~> TaskHandler[id: 1179; name: POREC:to_pairs_file (268); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/ea835d99762eff63d3a52897bd6864] ~> TaskHandler[id: 1180; name: POREC:to_pairs_file (269); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/4c1a7680b0b1ae265bba178d0bfd12] ~> TaskHandler[id: 1181; name: POREC:to_pairs_file (270); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/d2431992bc484d7449814a49a608c7] ~> TaskHandler[id: 1182; name: POREC:to_pairs_file (271); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/5a379b6fe60241781f67bf29cc8324] ~> TaskHandler[id: 1183; name: POREC:to_pairs_file (272); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7efed1e8521d0e2d4b0eff4e44f3ab] ~> TaskHandler[id: 1184; name: POREC:to_pairs_file (273); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/28478ef3b12841746e3c0118f7f83a] ~> TaskHandler[id: 1185; name: POREC:to_pairs_file (274); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/564311d27d426753358987a1ce519d] ~> TaskHandler[id: 1186; name: POREC:to_pairs_file (275); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/8bb2a11d2c13aa502fd6a0d60fdbf6] ~> TaskHandler[id: 1187; name: POREC:to_pairs_file (276); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/41042b4f34e2ca60f1d023a762df9c] ~> TaskHandler[id: 1188; name: POREC:to_pairs_file (277); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/eb1a66dd12f59718e2cb57b22854d3] .. remaining tasks omitted. Aug-18 06:02:53.835 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1178; name: POREC:to_pairs_file (267); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/7166580dfe52ae17043daaa5f83685] Aug-18 06:02:53.861 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:02:53.861 [Task submitter] INFO nextflow.Session - [45/ea835d] Submitted process > POREC:to_pairs_file (268) Aug-18 06:03:49.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1179; name: POREC:to_pairs_file (268); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/ea835d99762eff63d3a52897bd6864] Aug-18 06:04:32.549 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1179; name: POREC:to_pairs_file (268); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/ea835d99762eff63d3a52897bd6864] Aug-18 06:04:32.570 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:04:32.570 [Task submitter] INFO nextflow.Session - [5c/4c1a76] Submitted process > POREC:to_pairs_file (269) Aug-18 06:06:05.473 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1180; name: POREC:to_pairs_file (269); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/4c1a7680b0b1ae265bba178d0bfd12] Aug-18 06:06:05.513 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:06:05.513 [Task submitter] INFO nextflow.Session - [0d/d24319] Submitted process > POREC:to_pairs_file (270) Aug-18 06:07:01.615 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 634 -- tasks to be submitted are shown below ~> TaskHandler[id: 1182; name: POREC:to_pairs_file (271); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/5a379b6fe60241781f67bf29cc8324] ~> TaskHandler[id: 1183; name: POREC:to_pairs_file (272); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7efed1e8521d0e2d4b0eff4e44f3ab] ~> TaskHandler[id: 1184; name: POREC:to_pairs_file (273); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/28478ef3b12841746e3c0118f7f83a] ~> TaskHandler[id: 1185; name: POREC:to_pairs_file (274); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/564311d27d426753358987a1ce519d] ~> TaskHandler[id: 1186; name: POREC:to_pairs_file (275); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/8bb2a11d2c13aa502fd6a0d60fdbf6] ~> TaskHandler[id: 1187; name: POREC:to_pairs_file (276); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/41042b4f34e2ca60f1d023a762df9c] ~> TaskHandler[id: 1188; name: POREC:to_pairs_file (277); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/eb1a66dd12f59718e2cb57b22854d3] ~> TaskHandler[id: 1189; name: POREC:to_pairs_file (278); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/01e3093df2d83013d49bd84dbe3ef5] ~> TaskHandler[id: 1190; name: POREC:to_pairs_file (279); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/96de44f9e043ca063ffcad5fa5f9ef] ~> TaskHandler[id: 1191; name: POREC:to_pairs_file (280); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/7872ea3bb53956de203224aabd957a] .. remaining tasks omitted. Aug-18 06:07:40.615 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1181; name: POREC:to_pairs_file (270); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/d2431992bc484d7449814a49a608c7] Aug-18 06:07:40.619 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:07:40.620 [Task submitter] INFO nextflow.Session - [cf/5a379b] Submitted process > POREC:to_pairs_file (271) Aug-18 06:08:49.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1182; name: POREC:to_pairs_file (271); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/5a379b6fe60241781f67bf29cc8324] Aug-18 06:09:16.735 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1182; name: POREC:to_pairs_file (271); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/5a379b6fe60241781f67bf29cc8324] Aug-18 06:09:16.771 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:09:16.771 [Task submitter] INFO nextflow.Session - [92/7efed1] Submitted process > POREC:to_pairs_file (272) Aug-18 06:10:53.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1183; name: POREC:to_pairs_file (272); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/7efed1e8521d0e2d4b0eff4e44f3ab] Aug-18 06:10:53.532 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:10:53.532 [Task submitter] INFO nextflow.Session - [8e/28478e] Submitted process > POREC:to_pairs_file (273) Aug-18 06:12:01.693 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 631 -- tasks to be submitted are shown below ~> TaskHandler[id: 1185; name: POREC:to_pairs_file (274); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/564311d27d426753358987a1ce519d] ~> TaskHandler[id: 1186; name: POREC:to_pairs_file (275); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/8bb2a11d2c13aa502fd6a0d60fdbf6] ~> TaskHandler[id: 1187; name: POREC:to_pairs_file (276); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/41042b4f34e2ca60f1d023a762df9c] ~> TaskHandler[id: 1188; name: POREC:to_pairs_file (277); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/eb1a66dd12f59718e2cb57b22854d3] ~> TaskHandler[id: 1189; name: POREC:to_pairs_file (278); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/01e3093df2d83013d49bd84dbe3ef5] ~> TaskHandler[id: 1190; name: POREC:to_pairs_file (279); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/96de44f9e043ca063ffcad5fa5f9ef] ~> TaskHandler[id: 1191; name: POREC:to_pairs_file (280); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/7872ea3bb53956de203224aabd957a] ~> TaskHandler[id: 1192; name: POREC:to_pairs_file (281); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/d45b399070c0990a079131d8b0f16f] ~> TaskHandler[id: 1193; name: POREC:to_pairs_file (282); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/ca8d4f5a0542493b110a0926ba151e] ~> TaskHandler[id: 1194; name: POREC:to_pairs_file (283); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/134414053bea2f26dd68fd4fee5197] .. remaining tasks omitted. Aug-18 06:12:31.107 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1184; name: POREC:to_pairs_file (273); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/28478ef3b12841746e3c0118f7f83a] Aug-18 06:12:31.116 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:12:31.117 [Task submitter] INFO nextflow.Session - [4e/564311] Submitted process > POREC:to_pairs_file (274) Aug-18 06:13:49.896 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1185; name: POREC:to_pairs_file (274); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/564311d27d426753358987a1ce519d] Aug-18 06:14:05.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1185; name: POREC:to_pairs_file (274); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/564311d27d426753358987a1ce519d] Aug-18 06:14:05.883 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:14:05.887 [Task submitter] INFO nextflow.Session - [86/8bb2a1] Submitted process > POREC:to_pairs_file (275) Aug-18 06:15:38.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1186; name: POREC:to_pairs_file (275); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/8bb2a11d2c13aa502fd6a0d60fdbf6] Aug-18 06:15:39.004 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:15:39.004 [Task submitter] INFO nextflow.Session - [94/41042b] Submitted process > POREC:to_pairs_file (276) Aug-18 06:17:02.185 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 628 -- tasks to be submitted are shown below ~> TaskHandler[id: 1188; name: POREC:to_pairs_file (277); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/eb1a66dd12f59718e2cb57b22854d3] ~> TaskHandler[id: 1189; name: POREC:to_pairs_file (278); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/01e3093df2d83013d49bd84dbe3ef5] ~> TaskHandler[id: 1190; name: POREC:to_pairs_file (279); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/96de44f9e043ca063ffcad5fa5f9ef] ~> TaskHandler[id: 1191; name: POREC:to_pairs_file (280); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/7872ea3bb53956de203224aabd957a] ~> TaskHandler[id: 1192; name: POREC:to_pairs_file (281); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/d45b399070c0990a079131d8b0f16f] ~> TaskHandler[id: 1193; name: POREC:to_pairs_file (282); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/ca8d4f5a0542493b110a0926ba151e] ~> TaskHandler[id: 1194; name: POREC:to_pairs_file (283); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/134414053bea2f26dd68fd4fee5197] ~> TaskHandler[id: 1195; name: POREC:to_pairs_file (284); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/e945de67951bd77bec0bc3364165cc] ~> TaskHandler[id: 1196; name: POREC:to_pairs_file (285); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/3c81274ea13874a1c469ec23450c7e] ~> TaskHandler[id: 1197; name: POREC:to_pairs_file (286); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/42b49afb1f7ee5a94736b2c261e447] .. remaining tasks omitted. Aug-18 06:17:12.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1187; name: POREC:to_pairs_file (276); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/41042b4f34e2ca60f1d023a762df9c] Aug-18 06:17:12.341 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:17:12.342 [Task submitter] INFO nextflow.Session - [e1/eb1a66] Submitted process > POREC:to_pairs_file (277) Aug-18 06:18:46.384 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1188; name: POREC:to_pairs_file (277); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/eb1a66dd12f59718e2cb57b22854d3] Aug-18 06:18:46.418 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:18:46.418 [Task submitter] INFO nextflow.Session - [d6/01e309] Submitted process > POREC:to_pairs_file (278) Aug-18 06:18:49.910 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1189; name: POREC:to_pairs_file (278); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/01e3093df2d83013d49bd84dbe3ef5] Aug-18 06:20:21.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1189; name: POREC:to_pairs_file (278); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/01e3093df2d83013d49bd84dbe3ef5] Aug-18 06:20:21.590 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:20:21.590 [Task submitter] INFO nextflow.Session - [2f/96de44] Submitted process > POREC:to_pairs_file (279) Aug-18 06:21:55.966 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1190; name: POREC:to_pairs_file (279); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/96de44f9e043ca063ffcad5fa5f9ef] Aug-18 06:21:56.001 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:21:56.001 [Task submitter] INFO nextflow.Session - [84/7872ea] Submitted process > POREC:to_pairs_file (280) Aug-18 06:22:03.018 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 624 -- tasks to be submitted are shown below ~> TaskHandler[id: 1192; name: POREC:to_pairs_file (281); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/d45b399070c0990a079131d8b0f16f] ~> TaskHandler[id: 1193; name: POREC:to_pairs_file (282); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/ca8d4f5a0542493b110a0926ba151e] ~> TaskHandler[id: 1194; name: POREC:to_pairs_file (283); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/134414053bea2f26dd68fd4fee5197] ~> TaskHandler[id: 1195; name: POREC:to_pairs_file (284); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/e945de67951bd77bec0bc3364165cc] ~> TaskHandler[id: 1196; name: POREC:to_pairs_file (285); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/3c81274ea13874a1c469ec23450c7e] ~> TaskHandler[id: 1197; name: POREC:to_pairs_file (286); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/42b49afb1f7ee5a94736b2c261e447] ~> TaskHandler[id: 1198; name: POREC:to_pairs_file (287); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/6eaf380d03fc490d685f41149813d9] ~> TaskHandler[id: 1199; name: POREC:to_pairs_file (288); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/bc831aee420dafa1b285b5b1c12b14] ~> TaskHandler[id: 1200; name: POREC:to_pairs_file (289); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/ea48429fe1fee451fb5a262c3e7c7a] ~> TaskHandler[id: 1201; name: POREC:to_pairs_file (290); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/7c9c688c007c966bb749b90e5b2292] .. remaining tasks omitted. Aug-18 06:23:31.363 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1191; name: POREC:to_pairs_file (280); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/7872ea3bb53956de203224aabd957a] Aug-18 06:23:31.394 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:23:31.394 [Task submitter] INFO nextflow.Session - [b6/d45b39] Submitted process > POREC:to_pairs_file (281) Aug-18 06:23:49.923 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1192; name: POREC:to_pairs_file (281); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/d45b399070c0990a079131d8b0f16f] Aug-18 06:25:07.592 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1192; name: POREC:to_pairs_file (281); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/d45b399070c0990a079131d8b0f16f] Aug-18 06:25:07.616 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:25:07.616 [Task submitter] INFO nextflow.Session - [73/ca8d4f] Submitted process > POREC:to_pairs_file (282) Aug-18 06:26:44.207 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1193; name: POREC:to_pairs_file (282); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/ca8d4f5a0542493b110a0926ba151e] Aug-18 06:26:44.211 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:26:44.212 [Task submitter] INFO nextflow.Session - [ed/134414] Submitted process > POREC:to_pairs_file (283) Aug-18 06:27:03.254 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 621 -- tasks to be submitted are shown below ~> TaskHandler[id: 1195; name: POREC:to_pairs_file (284); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/e945de67951bd77bec0bc3364165cc] ~> TaskHandler[id: 1196; name: POREC:to_pairs_file (285); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/3c81274ea13874a1c469ec23450c7e] ~> TaskHandler[id: 1197; name: POREC:to_pairs_file (286); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/42b49afb1f7ee5a94736b2c261e447] ~> TaskHandler[id: 1198; name: POREC:to_pairs_file (287); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/6eaf380d03fc490d685f41149813d9] ~> TaskHandler[id: 1199; name: POREC:to_pairs_file (288); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/bc831aee420dafa1b285b5b1c12b14] ~> TaskHandler[id: 1200; name: POREC:to_pairs_file (289); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/ea48429fe1fee451fb5a262c3e7c7a] ~> TaskHandler[id: 1201; name: POREC:to_pairs_file (290); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/7c9c688c007c966bb749b90e5b2292] ~> TaskHandler[id: 1202; name: POREC:to_pairs_file (291); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/92f9f9261e8deb69a9c38f21ed4063] ~> TaskHandler[id: 1203; name: POREC:to_pairs_file (292); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/15f41d1f1c739e35898cc79f6e889b] ~> TaskHandler[id: 1204; name: POREC:to_pairs_file (293); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/5549570931cc43757e6575b43382f7] .. remaining tasks omitted. Aug-18 06:28:19.910 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1194; name: POREC:to_pairs_file (283); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/134414053bea2f26dd68fd4fee5197] Aug-18 06:28:19.932 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:28:19.932 [Task submitter] INFO nextflow.Session - [bd/e945de] Submitted process > POREC:to_pairs_file (284) Aug-18 06:28:49.931 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1195; name: POREC:to_pairs_file (284); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/e945de67951bd77bec0bc3364165cc] Aug-18 06:29:54.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1195; name: POREC:to_pairs_file (284); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/e945de67951bd77bec0bc3364165cc] Aug-18 06:29:54.636 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:29:54.637 [Task submitter] INFO nextflow.Session - [61/3c8127] Submitted process > POREC:to_pairs_file (285) Aug-18 06:31:31.655 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1196; name: POREC:to_pairs_file (285); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/61/3c81274ea13874a1c469ec23450c7e] Aug-18 06:31:31.675 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:31:31.675 [Task submitter] INFO nextflow.Session - [ce/42b49a] Submitted process > POREC:to_pairs_file (286) Aug-18 06:32:03.750 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 618 -- tasks to be submitted are shown below ~> TaskHandler[id: 1198; name: POREC:to_pairs_file (287); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/6eaf380d03fc490d685f41149813d9] ~> TaskHandler[id: 1199; name: POREC:to_pairs_file (288); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/bc831aee420dafa1b285b5b1c12b14] ~> TaskHandler[id: 1200; name: POREC:to_pairs_file (289); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/ea48429fe1fee451fb5a262c3e7c7a] ~> TaskHandler[id: 1201; name: POREC:to_pairs_file (290); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/7c9c688c007c966bb749b90e5b2292] ~> TaskHandler[id: 1202; name: POREC:to_pairs_file (291); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/92f9f9261e8deb69a9c38f21ed4063] ~> TaskHandler[id: 1203; name: POREC:to_pairs_file (292); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/15f41d1f1c739e35898cc79f6e889b] ~> TaskHandler[id: 1204; name: POREC:to_pairs_file (293); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/5549570931cc43757e6575b43382f7] ~> TaskHandler[id: 1205; name: POREC:to_pairs_file (294); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/09b63ff00f58263e6bab4a1862fa51] ~> TaskHandler[id: 1206; name: POREC:to_pairs_file (295); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/79b3401ea86e863d6dc994ea352392] ~> TaskHandler[id: 1207; name: POREC:to_pairs_file (296); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/c6256cc7a2723103548b35441ad7db] .. remaining tasks omitted. Aug-18 06:33:05.524 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1197; name: POREC:to_pairs_file (286); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/42b49afb1f7ee5a94736b2c261e447] Aug-18 06:33:05.531 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:33:05.531 [Task submitter] INFO nextflow.Session - [7b/6eaf38] Submitted process > POREC:to_pairs_file (287) Aug-18 06:33:49.938 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1198; name: POREC:to_pairs_file (287); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/6eaf380d03fc490d685f41149813d9] Aug-18 06:34:40.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1198; name: POREC:to_pairs_file (287); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/6eaf380d03fc490d685f41149813d9] Aug-18 06:34:40.700 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:34:40.700 [Task submitter] INFO nextflow.Session - [af/bc831a] Submitted process > POREC:to_pairs_file (288) Aug-18 06:36:14.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1199; name: POREC:to_pairs_file (288); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/bc831aee420dafa1b285b5b1c12b14] Aug-18 06:36:14.634 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:36:14.634 [Task submitter] INFO nextflow.Session - [8e/ea4842] Submitted process > POREC:to_pairs_file (289) Aug-18 06:37:04.746 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 615 -- tasks to be submitted are shown below ~> TaskHandler[id: 1201; name: POREC:to_pairs_file (290); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/7c9c688c007c966bb749b90e5b2292] ~> TaskHandler[id: 1202; name: POREC:to_pairs_file (291); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/92f9f9261e8deb69a9c38f21ed4063] ~> TaskHandler[id: 1203; name: POREC:to_pairs_file (292); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/15f41d1f1c739e35898cc79f6e889b] ~> TaskHandler[id: 1204; name: POREC:to_pairs_file (293); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/5549570931cc43757e6575b43382f7] ~> TaskHandler[id: 1205; name: POREC:to_pairs_file (294); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/09b63ff00f58263e6bab4a1862fa51] ~> TaskHandler[id: 1206; name: POREC:to_pairs_file (295); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/79b3401ea86e863d6dc994ea352392] ~> TaskHandler[id: 1207; name: POREC:to_pairs_file (296); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/c6256cc7a2723103548b35441ad7db] ~> TaskHandler[id: 1208; name: POREC:to_pairs_file (297); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/def776acc759dd7e1039d404bafe78] ~> TaskHandler[id: 1209; name: POREC:to_pairs_file (298); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/4ebd7895dbfe6068b52cbbe6f5e9b9] ~> TaskHandler[id: 1210; name: POREC:to_pairs_file (299); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/65d17d81fc26c4f053a13c38f21e17] .. remaining tasks omitted. Aug-18 06:37:48.298 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1200; name: POREC:to_pairs_file (289); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/ea48429fe1fee451fb5a262c3e7c7a] Aug-18 06:37:48.333 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:37:48.333 [Task submitter] INFO nextflow.Session - [db/7c9c68] Submitted process > POREC:to_pairs_file (290) Aug-18 06:38:49.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1201; name: POREC:to_pairs_file (290); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/7c9c688c007c966bb749b90e5b2292] Aug-18 06:39:23.346 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1201; name: POREC:to_pairs_file (290); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/7c9c688c007c966bb749b90e5b2292] Aug-18 06:39:23.369 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:39:23.369 [Task submitter] INFO nextflow.Session - [3f/92f9f9] Submitted process > POREC:to_pairs_file (291) Aug-18 06:40:59.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1202; name: POREC:to_pairs_file (291); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/92f9f9261e8deb69a9c38f21ed4063] Aug-18 06:40:59.183 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:40:59.183 [Task submitter] INFO nextflow.Session - [79/15f41d] Submitted process > POREC:to_pairs_file (292) Aug-18 06:42:05.316 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 612 -- tasks to be submitted are shown below ~> TaskHandler[id: 1204; name: POREC:to_pairs_file (293); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/5549570931cc43757e6575b43382f7] ~> TaskHandler[id: 1205; name: POREC:to_pairs_file (294); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/09b63ff00f58263e6bab4a1862fa51] ~> TaskHandler[id: 1206; name: POREC:to_pairs_file (295); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/79b3401ea86e863d6dc994ea352392] ~> TaskHandler[id: 1207; name: POREC:to_pairs_file (296); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/c6256cc7a2723103548b35441ad7db] ~> TaskHandler[id: 1208; name: POREC:to_pairs_file (297); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/def776acc759dd7e1039d404bafe78] ~> TaskHandler[id: 1209; name: POREC:to_pairs_file (298); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/4ebd7895dbfe6068b52cbbe6f5e9b9] ~> TaskHandler[id: 1210; name: POREC:to_pairs_file (299); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/65d17d81fc26c4f053a13c38f21e17] ~> TaskHandler[id: 1211; name: POREC:to_pairs_file (300); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/6441b3c937537059229a1132fcb320] ~> TaskHandler[id: 1212; name: POREC:to_pairs_file (301); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/9b50b96e0de349beaa58f2d915c195] ~> TaskHandler[id: 1214; name: POREC:to_pairs_file (303); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/27c856fefc7ddb65f2c2ef77a3f79e] .. remaining tasks omitted. Aug-18 06:42:34.719 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1203; name: POREC:to_pairs_file (292); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/15f41d1f1c739e35898cc79f6e889b] Aug-18 06:42:34.730 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:42:34.730 [Task submitter] INFO nextflow.Session - [95/554957] Submitted process > POREC:to_pairs_file (293) Aug-18 06:43:50.042 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1204; name: POREC:to_pairs_file (293); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/5549570931cc43757e6575b43382f7] Aug-18 06:44:09.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1204; name: POREC:to_pairs_file (293); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/5549570931cc43757e6575b43382f7] Aug-18 06:44:09.886 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:44:09.886 [Task submitter] INFO nextflow.Session - [93/09b63f] Submitted process > POREC:to_pairs_file (294) Aug-18 06:45:44.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1205; name: POREC:to_pairs_file (294); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/09b63ff00f58263e6bab4a1862fa51] Aug-18 06:45:44.599 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:45:44.599 [Task submitter] INFO nextflow.Session - [24/79b340] Submitted process > POREC:to_pairs_file (295) Aug-18 06:47:05.773 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 609 -- tasks to be submitted are shown below ~> TaskHandler[id: 1207; name: POREC:to_pairs_file (296); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/c6256cc7a2723103548b35441ad7db] ~> TaskHandler[id: 1208; name: POREC:to_pairs_file (297); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/def776acc759dd7e1039d404bafe78] ~> TaskHandler[id: 1209; name: POREC:to_pairs_file (298); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/4ebd7895dbfe6068b52cbbe6f5e9b9] ~> TaskHandler[id: 1210; name: POREC:to_pairs_file (299); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/65d17d81fc26c4f053a13c38f21e17] ~> TaskHandler[id: 1211; name: POREC:to_pairs_file (300); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/6441b3c937537059229a1132fcb320] ~> TaskHandler[id: 1212; name: POREC:to_pairs_file (301); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/9b50b96e0de349beaa58f2d915c195] ~> TaskHandler[id: 1214; name: POREC:to_pairs_file (303); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/27c856fefc7ddb65f2c2ef77a3f79e] ~> TaskHandler[id: 1215; name: POREC:to_pairs_file (304); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4803c8225e3a9fb7bb14595635cead] ~> TaskHandler[id: 1216; name: POREC:to_pairs_file (305); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/4c863c6f355b7b7521428fdbc25fb5] ~> TaskHandler[id: 1217; name: POREC:to_pairs_file (306); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/f750b25a13737b6eb77b31cf509868] .. remaining tasks omitted. Aug-18 06:47:18.844 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1206; name: POREC:to_pairs_file (295); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/79b3401ea86e863d6dc994ea352392] Aug-18 06:47:18.886 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:47:18.886 [Task submitter] INFO nextflow.Session - [da/c6256c] Submitted process > POREC:to_pairs_file (296) Aug-18 06:48:50.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1207; name: POREC:to_pairs_file (296); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/c6256cc7a2723103548b35441ad7db] Aug-18 06:48:53.768 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1207; name: POREC:to_pairs_file (296); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/c6256cc7a2723103548b35441ad7db] Aug-18 06:48:53.802 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:48:53.802 [Task submitter] INFO nextflow.Session - [da/def776] Submitted process > POREC:to_pairs_file (297) Aug-18 06:50:27.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1208; name: POREC:to_pairs_file (297); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/def776acc759dd7e1039d404bafe78] Aug-18 06:50:27.308 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:50:27.308 [Task submitter] INFO nextflow.Session - [c7/4ebd78] Submitted process > POREC:to_pairs_file (298) Aug-18 06:52:00.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1209; name: POREC:to_pairs_file (298); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c7/4ebd7895dbfe6068b52cbbe6f5e9b9] Aug-18 06:52:00.168 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:52:00.168 [Task submitter] INFO nextflow.Session - [f0/65d17d] Submitted process > POREC:to_pairs_file (299) Aug-18 06:52:06.181 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 605 -- tasks to be submitted are shown below ~> TaskHandler[id: 1211; name: POREC:to_pairs_file (300); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/6441b3c937537059229a1132fcb320] ~> TaskHandler[id: 1212; name: POREC:to_pairs_file (301); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/9b50b96e0de349beaa58f2d915c195] ~> TaskHandler[id: 1214; name: POREC:to_pairs_file (303); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/27c856fefc7ddb65f2c2ef77a3f79e] ~> TaskHandler[id: 1215; name: POREC:to_pairs_file (304); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4803c8225e3a9fb7bb14595635cead] ~> TaskHandler[id: 1216; name: POREC:to_pairs_file (305); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/4c863c6f355b7b7521428fdbc25fb5] ~> TaskHandler[id: 1217; name: POREC:to_pairs_file (306); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/f750b25a13737b6eb77b31cf509868] ~> TaskHandler[id: 1218; name: POREC:to_pairs_file (307); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/2d9b66f8e9b8e86cc8f7802e470cfb] ~> TaskHandler[id: 1219; name: POREC:to_pairs_file (308); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/119999ea18d67431e245c9c75485d8] ~> TaskHandler[id: 1220; name: POREC:to_pairs_file (309); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/9d7a0e749204e49ad9cb14b7af68e3] ~> TaskHandler[id: 1221; name: POREC:to_pairs_file (310); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/27851d1f3b71005d13dad878f7b843] .. remaining tasks omitted. Aug-18 06:53:34.743 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1210; name: POREC:to_pairs_file (299); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/65d17d81fc26c4f053a13c38f21e17] Aug-18 06:53:34.786 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:53:34.786 [Task submitter] INFO nextflow.Session - [4f/6441b3] Submitted process > POREC:to_pairs_file (300) Aug-18 06:53:50.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1211; name: POREC:to_pairs_file (300); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/6441b3c937537059229a1132fcb320] Aug-18 06:55:08.573 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1211; name: POREC:to_pairs_file (300); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/6441b3c937537059229a1132fcb320] Aug-18 06:55:08.605 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:55:08.605 [Task submitter] INFO nextflow.Session - [c2/9b50b9] Submitted process > POREC:to_pairs_file (301) Aug-18 06:56:42.242 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1212; name: POREC:to_pairs_file (301); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/9b50b96e0de349beaa58f2d915c195] Aug-18 06:56:42.249 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:56:42.249 [Task submitter] INFO nextflow.Session - [29/27c856] Submitted process > POREC:to_pairs_file (303) Aug-18 06:57:06.300 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 602 -- tasks to be submitted are shown below ~> TaskHandler[id: 1215; name: POREC:to_pairs_file (304); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4803c8225e3a9fb7bb14595635cead] ~> TaskHandler[id: 1216; name: POREC:to_pairs_file (305); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/4c863c6f355b7b7521428fdbc25fb5] ~> TaskHandler[id: 1217; name: POREC:to_pairs_file (306); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/f750b25a13737b6eb77b31cf509868] ~> TaskHandler[id: 1218; name: POREC:to_pairs_file (307); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/2d9b66f8e9b8e86cc8f7802e470cfb] ~> TaskHandler[id: 1219; name: POREC:to_pairs_file (308); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/119999ea18d67431e245c9c75485d8] ~> TaskHandler[id: 1220; name: POREC:to_pairs_file (309); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/9d7a0e749204e49ad9cb14b7af68e3] ~> TaskHandler[id: 1221; name: POREC:to_pairs_file (310); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/27851d1f3b71005d13dad878f7b843] ~> TaskHandler[id: 1222; name: POREC:to_pairs_file (311); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/b2b4a89966dd6cd5e867d3c4078e91] ~> TaskHandler[id: 1223; name: POREC:to_pairs_file (312); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/4c9de3822acae4c1bddd495f1aeaa6] ~> TaskHandler[id: 1224; name: POREC:to_pairs_file (313); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/e5df8da951f1bb2e7bad619ed52049] .. remaining tasks omitted. Aug-18 06:58:16.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1214; name: POREC:to_pairs_file (303); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/27c856fefc7ddb65f2c2ef77a3f79e] Aug-18 06:58:16.276 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:58:16.276 [Task submitter] INFO nextflow.Session - [3f/4803c8] Submitted process > POREC:to_pairs_file (304) Aug-18 06:58:50.153 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1215; name: POREC:to_pairs_file (304); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4803c8225e3a9fb7bb14595635cead] Aug-18 06:59:51.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1215; name: POREC:to_pairs_file (304); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/4803c8225e3a9fb7bb14595635cead] Aug-18 06:59:51.138 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 06:59:51.138 [Task submitter] INFO nextflow.Session - [d6/4c863c] Submitted process > POREC:to_pairs_file (305) Aug-18 07:01:25.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1216; name: POREC:to_pairs_file (305); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/4c863c6f355b7b7521428fdbc25fb5] Aug-18 07:01:25.151 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:01:25.151 [Task submitter] INFO nextflow.Session - [f6/f750b2] Submitted process > POREC:to_pairs_file (306) Aug-18 07:02:07.245 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 599 -- tasks to be submitted are shown below ~> TaskHandler[id: 1218; name: POREC:to_pairs_file (307); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/2d9b66f8e9b8e86cc8f7802e470cfb] ~> TaskHandler[id: 1219; name: POREC:to_pairs_file (308); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/119999ea18d67431e245c9c75485d8] ~> TaskHandler[id: 1220; name: POREC:to_pairs_file (309); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/9d7a0e749204e49ad9cb14b7af68e3] ~> TaskHandler[id: 1221; name: POREC:to_pairs_file (310); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/27851d1f3b71005d13dad878f7b843] ~> TaskHandler[id: 1222; name: POREC:to_pairs_file (311); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/b2b4a89966dd6cd5e867d3c4078e91] ~> TaskHandler[id: 1223; name: POREC:to_pairs_file (312); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/4c9de3822acae4c1bddd495f1aeaa6] ~> TaskHandler[id: 1224; name: POREC:to_pairs_file (313); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/e5df8da951f1bb2e7bad619ed52049] ~> TaskHandler[id: 1225; name: POREC:to_pairs_file (314); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/220ee2f57d58252429ea51dff67e8a] ~> TaskHandler[id: 1226; name: POREC:to_pairs_file (315); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/d1945e46fd3eaf2276acd45d811450] ~> TaskHandler[id: 1227; name: POREC:to_pairs_file (316); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/71612d3d69f7ff994aa35a1e5059c9] .. remaining tasks omitted. Aug-18 07:03:01.241 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1217; name: POREC:to_pairs_file (306); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/f750b25a13737b6eb77b31cf509868] Aug-18 07:03:01.281 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:03:01.282 [Task submitter] INFO nextflow.Session - [09/2d9b66] Submitted process > POREC:to_pairs_file (307) Aug-18 07:03:50.183 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1218; name: POREC:to_pairs_file (307); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/2d9b66f8e9b8e86cc8f7802e470cfb] Aug-18 07:04:39.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1218; name: POREC:to_pairs_file (307); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/2d9b66f8e9b8e86cc8f7802e470cfb] Aug-18 07:04:39.384 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:04:39.384 [Task submitter] INFO nextflow.Session - [e9/119999] Submitted process > POREC:to_pairs_file (308) Aug-18 07:06:15.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1219; name: POREC:to_pairs_file (308); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/119999ea18d67431e245c9c75485d8] Aug-18 07:06:15.726 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:06:15.726 [Task submitter] INFO nextflow.Session - [80/9d7a0e] Submitted process > POREC:to_pairs_file (309) Aug-18 07:07:07.817 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 596 -- tasks to be submitted are shown below ~> TaskHandler[id: 1221; name: POREC:to_pairs_file (310); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/27851d1f3b71005d13dad878f7b843] ~> TaskHandler[id: 1222; name: POREC:to_pairs_file (311); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/b2b4a89966dd6cd5e867d3c4078e91] ~> TaskHandler[id: 1223; name: POREC:to_pairs_file (312); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/4c9de3822acae4c1bddd495f1aeaa6] ~> TaskHandler[id: 1224; name: POREC:to_pairs_file (313); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/e5df8da951f1bb2e7bad619ed52049] ~> TaskHandler[id: 1225; name: POREC:to_pairs_file (314); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/220ee2f57d58252429ea51dff67e8a] ~> TaskHandler[id: 1226; name: POREC:to_pairs_file (315); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/d1945e46fd3eaf2276acd45d811450] ~> TaskHandler[id: 1227; name: POREC:to_pairs_file (316); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/71612d3d69f7ff994aa35a1e5059c9] ~> TaskHandler[id: 1228; name: POREC:to_pairs_file (317); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/2f1fc4a89bb0edfaf38b405b1053b1] ~> TaskHandler[id: 1229; name: POREC:to_pairs_file (318); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/a50005aa1bf3c9e4ee40c156c0917f] ~> TaskHandler[id: 1230; name: POREC:to_pairs_file (319); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/45ae4945b67a714576765838e5e253] .. remaining tasks omitted. Aug-18 07:07:50.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1220; name: POREC:to_pairs_file (309); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/9d7a0e749204e49ad9cb14b7af68e3] Aug-18 07:07:50.192 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:07:50.192 [Task submitter] INFO nextflow.Session - [b6/27851d] Submitted process > POREC:to_pairs_file (310) Aug-18 07:08:50.222 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1221; name: POREC:to_pairs_file (310); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/27851d1f3b71005d13dad878f7b843] Aug-18 07:09:27.061 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1221; name: POREC:to_pairs_file (310); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/27851d1f3b71005d13dad878f7b843] Aug-18 07:09:27.095 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:09:27.095 [Task submitter] INFO nextflow.Session - [e9/b2b4a8] Submitted process > POREC:to_pairs_file (311) Aug-18 07:11:03.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1222; name: POREC:to_pairs_file (311); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/b2b4a89966dd6cd5e867d3c4078e91] Aug-18 07:11:03.853 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:11:03.853 [Task submitter] INFO nextflow.Session - [d2/4c9de3] Submitted process > POREC:to_pairs_file (312) Aug-18 07:12:07.989 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 593 -- tasks to be submitted are shown below ~> TaskHandler[id: 1224; name: POREC:to_pairs_file (313); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/e5df8da951f1bb2e7bad619ed52049] ~> TaskHandler[id: 1225; name: POREC:to_pairs_file (314); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/220ee2f57d58252429ea51dff67e8a] ~> TaskHandler[id: 1226; name: POREC:to_pairs_file (315); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/d1945e46fd3eaf2276acd45d811450] ~> TaskHandler[id: 1227; name: POREC:to_pairs_file (316); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/71612d3d69f7ff994aa35a1e5059c9] ~> TaskHandler[id: 1228; name: POREC:to_pairs_file (317); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/2f1fc4a89bb0edfaf38b405b1053b1] ~> TaskHandler[id: 1229; name: POREC:to_pairs_file (318); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/a50005aa1bf3c9e4ee40c156c0917f] ~> TaskHandler[id: 1230; name: POREC:to_pairs_file (319); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/45ae4945b67a714576765838e5e253] ~> TaskHandler[id: 1231; name: POREC:to_pairs_file (320); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/e5bcca4f5ee221b7bb70cfd0cd8593] ~> TaskHandler[id: 1232; name: POREC:to_pairs_file (321); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/88f1b1320eab220fab7aa0ff1ba647] ~> TaskHandler[id: 1233; name: POREC:to_pairs_file (322); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/012a8210d4fc04c135c4f3403732e1] .. remaining tasks omitted. Aug-18 07:12:39.377 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1223; name: POREC:to_pairs_file (312); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/4c9de3822acae4c1bddd495f1aeaa6] Aug-18 07:12:39.423 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:12:39.423 [Task submitter] INFO nextflow.Session - [1b/e5df8d] Submitted process > POREC:to_pairs_file (313) Aug-18 07:13:50.286 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1224; name: POREC:to_pairs_file (313); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/e5df8da951f1bb2e7bad619ed52049] Aug-18 07:14:16.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1224; name: POREC:to_pairs_file (313); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/e5df8da951f1bb2e7bad619ed52049] Aug-18 07:14:16.103 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:14:16.103 [Task submitter] INFO nextflow.Session - [e1/220ee2] Submitted process > POREC:to_pairs_file (314) Aug-18 07:15:51.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1225; name: POREC:to_pairs_file (314); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e1/220ee2f57d58252429ea51dff67e8a] Aug-18 07:15:51.273 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:15:51.273 [Task submitter] INFO nextflow.Session - [1c/d1945e] Submitted process > POREC:to_pairs_file (315) Aug-18 07:17:08.409 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 590 -- tasks to be submitted are shown below ~> TaskHandler[id: 1227; name: POREC:to_pairs_file (316); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/71612d3d69f7ff994aa35a1e5059c9] ~> TaskHandler[id: 1228; name: POREC:to_pairs_file (317); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/2f1fc4a89bb0edfaf38b405b1053b1] ~> TaskHandler[id: 1229; name: POREC:to_pairs_file (318); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/a50005aa1bf3c9e4ee40c156c0917f] ~> TaskHandler[id: 1230; name: POREC:to_pairs_file (319); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/45ae4945b67a714576765838e5e253] ~> TaskHandler[id: 1231; name: POREC:to_pairs_file (320); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/e5bcca4f5ee221b7bb70cfd0cd8593] ~> TaskHandler[id: 1232; name: POREC:to_pairs_file (321); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/88f1b1320eab220fab7aa0ff1ba647] ~> TaskHandler[id: 1233; name: POREC:to_pairs_file (322); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/012a8210d4fc04c135c4f3403732e1] ~> TaskHandler[id: 1234; name: POREC:to_pairs_file (323); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/3b3a7d69b4dd0f4b5d0ccc5042be55] ~> TaskHandler[id: 1235; name: POREC:to_pairs_file (324); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/aae60fae4cfd3aa87c08f98599e2a2] ~> TaskHandler[id: 1236; name: POREC:to_pairs_file (325); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/bf7d4252b990e62b3923c37abfca1e] .. remaining tasks omitted. Aug-18 07:17:27.371 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1226; name: POREC:to_pairs_file (315); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/d1945e46fd3eaf2276acd45d811450] Aug-18 07:17:27.377 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:17:27.378 [Task submitter] INFO nextflow.Session - [58/71612d] Submitted process > POREC:to_pairs_file (316) Aug-18 07:18:50.313 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1227; name: POREC:to_pairs_file (316); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/71612d3d69f7ff994aa35a1e5059c9] Aug-18 07:19:02.950 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1227; name: POREC:to_pairs_file (316); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/71612d3d69f7ff994aa35a1e5059c9] Aug-18 07:19:02.980 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:19:02.980 [Task submitter] INFO nextflow.Session - [90/2f1fc4] Submitted process > POREC:to_pairs_file (317) Aug-18 07:20:39.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1228; name: POREC:to_pairs_file (317); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/90/2f1fc4a89bb0edfaf38b405b1053b1] Aug-18 07:20:39.095 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:20:39.095 [Task submitter] INFO nextflow.Session - [a2/a50005] Submitted process > POREC:to_pairs_file (318) Aug-18 07:22:09.252 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 587 -- tasks to be submitted are shown below ~> TaskHandler[id: 1230; name: POREC:to_pairs_file (319); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/45ae4945b67a714576765838e5e253] ~> TaskHandler[id: 1231; name: POREC:to_pairs_file (320); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/e5bcca4f5ee221b7bb70cfd0cd8593] ~> TaskHandler[id: 1232; name: POREC:to_pairs_file (321); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/88f1b1320eab220fab7aa0ff1ba647] ~> TaskHandler[id: 1233; name: POREC:to_pairs_file (322); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/012a8210d4fc04c135c4f3403732e1] ~> TaskHandler[id: 1234; name: POREC:to_pairs_file (323); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/3b3a7d69b4dd0f4b5d0ccc5042be55] ~> TaskHandler[id: 1235; name: POREC:to_pairs_file (324); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/aae60fae4cfd3aa87c08f98599e2a2] ~> TaskHandler[id: 1236; name: POREC:to_pairs_file (325); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/bf7d4252b990e62b3923c37abfca1e] ~> TaskHandler[id: 1237; name: POREC:to_pairs_file (326); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/31a3344bced78c96a186d2a7cb33ee] ~> TaskHandler[id: 1238; name: POREC:to_pairs_file (327); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/5a1250102f731d120e6cff97531aa4] ~> TaskHandler[id: 1239; name: POREC:to_pairs_file (328); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/0f35f2b1d6f84353c23eab88c68be1] .. remaining tasks omitted. Aug-18 07:22:13.483 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1229; name: POREC:to_pairs_file (318); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/a50005aa1bf3c9e4ee40c156c0917f] Aug-18 07:22:13.512 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:22:13.512 [Task submitter] INFO nextflow.Session - [0e/45ae49] Submitted process > POREC:to_pairs_file (319) Aug-18 07:23:49.610 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1230; name: POREC:to_pairs_file (319); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/45ae4945b67a714576765838e5e253] Aug-18 07:23:49.626 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:23:49.626 [Task submitter] INFO nextflow.Session - [68/e5bcca] Submitted process > POREC:to_pairs_file (320) Aug-18 07:23:50.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1231; name: POREC:to_pairs_file (320); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/e5bcca4f5ee221b7bb70cfd0cd8593] Aug-18 07:25:24.732 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1231; name: POREC:to_pairs_file (320); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/68/e5bcca4f5ee221b7bb70cfd0cd8593] Aug-18 07:25:24.780 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:25:24.780 [Task submitter] INFO nextflow.Session - [69/88f1b1] Submitted process > POREC:to_pairs_file (321) Aug-18 07:26:59.521 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1232; name: POREC:to_pairs_file (321); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/88f1b1320eab220fab7aa0ff1ba647] Aug-18 07:26:59.543 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:26:59.543 [Task submitter] INFO nextflow.Session - [b9/012a82] Submitted process > POREC:to_pairs_file (322) Aug-18 07:27:09.571 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 583 -- tasks to be submitted are shown below ~> TaskHandler[id: 1234; name: POREC:to_pairs_file (323); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/3b3a7d69b4dd0f4b5d0ccc5042be55] ~> TaskHandler[id: 1235; name: POREC:to_pairs_file (324); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/aae60fae4cfd3aa87c08f98599e2a2] ~> TaskHandler[id: 1236; name: POREC:to_pairs_file (325); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/bf7d4252b990e62b3923c37abfca1e] ~> TaskHandler[id: 1237; name: POREC:to_pairs_file (326); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/31a3344bced78c96a186d2a7cb33ee] ~> TaskHandler[id: 1238; name: POREC:to_pairs_file (327); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/5a1250102f731d120e6cff97531aa4] ~> TaskHandler[id: 1239; name: POREC:to_pairs_file (328); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/0f35f2b1d6f84353c23eab88c68be1] ~> TaskHandler[id: 1240; name: POREC:to_pairs_file (329); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7cdec7522c76aa14da678d6000086c] ~> TaskHandler[id: 1241; name: POREC:to_pairs_file (330); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/1cafb7384b4c83361705629e2a20e8] ~> TaskHandler[id: 1242; name: POREC:to_pairs_file (331); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/caf4c446e36a2c8c190b9b3f5cb42d] ~> TaskHandler[id: 1243; name: POREC:to_pairs_file (332); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/211c9ab05e4d6003145b6827244fb8] .. remaining tasks omitted. Aug-18 07:28:34.236 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1233; name: POREC:to_pairs_file (322); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/012a8210d4fc04c135c4f3403732e1] Aug-18 07:28:34.254 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:28:34.254 [Task submitter] INFO nextflow.Session - [63/3b3a7d] Submitted process > POREC:to_pairs_file (323) Aug-18 07:28:50.367 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1234; name: POREC:to_pairs_file (323); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/3b3a7d69b4dd0f4b5d0ccc5042be55] Aug-18 07:30:08.873 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1234; name: POREC:to_pairs_file (323); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/3b3a7d69b4dd0f4b5d0ccc5042be55] Aug-18 07:30:08.890 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:30:08.890 [Task submitter] INFO nextflow.Session - [33/aae60f] Submitted process > POREC:to_pairs_file (324) Aug-18 07:31:44.776 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1235; name: POREC:to_pairs_file (324); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/33/aae60fae4cfd3aa87c08f98599e2a2] Aug-18 07:31:44.782 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:31:44.783 [Task submitter] INFO nextflow.Session - [37/bf7d42] Submitted process > POREC:to_pairs_file (325) Aug-18 07:32:09.854 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 580 -- tasks to be submitted are shown below ~> TaskHandler[id: 1237; name: POREC:to_pairs_file (326); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/31a3344bced78c96a186d2a7cb33ee] ~> TaskHandler[id: 1238; name: POREC:to_pairs_file (327); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/5a1250102f731d120e6cff97531aa4] ~> TaskHandler[id: 1239; name: POREC:to_pairs_file (328); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/0f35f2b1d6f84353c23eab88c68be1] ~> TaskHandler[id: 1240; name: POREC:to_pairs_file (329); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7cdec7522c76aa14da678d6000086c] ~> TaskHandler[id: 1241; name: POREC:to_pairs_file (330); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/1cafb7384b4c83361705629e2a20e8] ~> TaskHandler[id: 1242; name: POREC:to_pairs_file (331); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/caf4c446e36a2c8c190b9b3f5cb42d] ~> TaskHandler[id: 1243; name: POREC:to_pairs_file (332); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/211c9ab05e4d6003145b6827244fb8] ~> TaskHandler[id: 1244; name: POREC:to_pairs_file (333); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/8d4bcbf3712efb9f769d3d87cfa4b9] ~> TaskHandler[id: 1245; name: POREC:to_pairs_file (334); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/3778c1d5f7a09ce1458eff41c23182] ~> TaskHandler[id: 1246; name: POREC:to_pairs_file (335); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/a936ca481852f794c3293a703250ec] .. remaining tasks omitted. Aug-18 07:33:20.838 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1236; name: POREC:to_pairs_file (325); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/37/bf7d4252b990e62b3923c37abfca1e] Aug-18 07:33:20.865 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:33:20.874 [Task submitter] INFO nextflow.Session - [0b/31a334] Submitted process > POREC:to_pairs_file (326) Aug-18 07:33:50.412 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1237; name: POREC:to_pairs_file (326); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/31a3344bced78c96a186d2a7cb33ee] Aug-18 07:34:56.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1237; name: POREC:to_pairs_file (326); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/31a3344bced78c96a186d2a7cb33ee] Aug-18 07:34:56.398 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:34:56.398 [Task submitter] INFO nextflow.Session - [1b/5a1250] Submitted process > POREC:to_pairs_file (327) Aug-18 07:36:30.870 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1238; name: POREC:to_pairs_file (327); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/5a1250102f731d120e6cff97531aa4] Aug-18 07:36:30.900 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:36:30.900 [Task submitter] INFO nextflow.Session - [eb/0f35f2] Submitted process > POREC:to_pairs_file (328) Aug-18 07:37:10.017 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 577 -- tasks to be submitted are shown below ~> TaskHandler[id: 1240; name: POREC:to_pairs_file (329); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7cdec7522c76aa14da678d6000086c] ~> TaskHandler[id: 1241; name: POREC:to_pairs_file (330); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/1cafb7384b4c83361705629e2a20e8] ~> TaskHandler[id: 1242; name: POREC:to_pairs_file (331); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/caf4c446e36a2c8c190b9b3f5cb42d] ~> TaskHandler[id: 1243; name: POREC:to_pairs_file (332); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/211c9ab05e4d6003145b6827244fb8] ~> TaskHandler[id: 1244; name: POREC:to_pairs_file (333); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/8d4bcbf3712efb9f769d3d87cfa4b9] ~> TaskHandler[id: 1245; name: POREC:to_pairs_file (334); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/3778c1d5f7a09ce1458eff41c23182] ~> TaskHandler[id: 1246; name: POREC:to_pairs_file (335); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/a936ca481852f794c3293a703250ec] ~> TaskHandler[id: 1247; name: POREC:to_pairs_file (336); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/ed69b2818021ce11b08edac0298dc4] ~> TaskHandler[id: 1248; name: POREC:to_pairs_file (337); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/ca8080e6f9241b40d03c08cb39638d] ~> TaskHandler[id: 1249; name: POREC:to_pairs_file (338); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/b3ba488610b774d692a5392e0c1016] .. remaining tasks omitted. Aug-18 07:38:05.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1239; name: POREC:to_pairs_file (328); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/0f35f2b1d6f84353c23eab88c68be1] Aug-18 07:38:05.077 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:38:05.077 [Task submitter] INFO nextflow.Session - [14/7cdec7] Submitted process > POREC:to_pairs_file (329) Aug-18 07:38:50.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1240; name: POREC:to_pairs_file (329); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7cdec7522c76aa14da678d6000086c] Aug-18 07:39:39.654 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1240; name: POREC:to_pairs_file (329); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/7cdec7522c76aa14da678d6000086c] Aug-18 07:39:39.658 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:39:39.658 [Task submitter] INFO nextflow.Session - [5b/1cafb7] Submitted process > POREC:to_pairs_file (330) Aug-18 07:41:15.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1241; name: POREC:to_pairs_file (330); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5b/1cafb7384b4c83361705629e2a20e8] Aug-18 07:41:15.693 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:41:15.694 [Task submitter] INFO nextflow.Session - [b8/caf4c4] Submitted process > POREC:to_pairs_file (331) Aug-18 07:42:10.786 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 574 -- tasks to be submitted are shown below ~> TaskHandler[id: 1243; name: POREC:to_pairs_file (332); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/211c9ab05e4d6003145b6827244fb8] ~> TaskHandler[id: 1244; name: POREC:to_pairs_file (333); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/8d4bcbf3712efb9f769d3d87cfa4b9] ~> TaskHandler[id: 1245; name: POREC:to_pairs_file (334); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/3778c1d5f7a09ce1458eff41c23182] ~> TaskHandler[id: 1246; name: POREC:to_pairs_file (335); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/a936ca481852f794c3293a703250ec] ~> TaskHandler[id: 1247; name: POREC:to_pairs_file (336); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/ed69b2818021ce11b08edac0298dc4] ~> TaskHandler[id: 1248; name: POREC:to_pairs_file (337); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/ca8080e6f9241b40d03c08cb39638d] ~> TaskHandler[id: 1249; name: POREC:to_pairs_file (338); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/b3ba488610b774d692a5392e0c1016] ~> TaskHandler[id: 1250; name: POREC:to_pairs_file (339); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/9ba0206062534511e875f119bc48a4] ~> TaskHandler[id: 1251; name: POREC:to_pairs_file (340); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/6caa11cea7581e84ad870e756c5cfa] ~> TaskHandler[id: 1252; name: POREC:to_pairs_file (341); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/e20cc1085f83d75ea4b16dc5df4b25] .. remaining tasks omitted. Aug-18 07:42:49.521 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1242; name: POREC:to_pairs_file (331); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/caf4c446e36a2c8c190b9b3f5cb42d] Aug-18 07:42:49.525 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:42:49.526 [Task submitter] INFO nextflow.Session - [b5/211c9a] Submitted process > POREC:to_pairs_file (332) Aug-18 07:43:50.518 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1243; name: POREC:to_pairs_file (332); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/211c9ab05e4d6003145b6827244fb8] Aug-18 07:44:25.379 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1243; name: POREC:to_pairs_file (332); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/211c9ab05e4d6003145b6827244fb8] Aug-18 07:44:25.383 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:44:25.383 [Task submitter] INFO nextflow.Session - [fe/8d4bcb] Submitted process > POREC:to_pairs_file (333) Aug-18 07:45:59.875 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1244; name: POREC:to_pairs_file (333); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fe/8d4bcbf3712efb9f769d3d87cfa4b9] Aug-18 07:45:59.881 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:45:59.881 [Task submitter] INFO nextflow.Session - [f2/3778c1] Submitted process > POREC:to_pairs_file (334) Aug-18 07:47:10.998 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 571 -- tasks to be submitted are shown below ~> TaskHandler[id: 1246; name: POREC:to_pairs_file (335); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/a936ca481852f794c3293a703250ec] ~> TaskHandler[id: 1247; name: POREC:to_pairs_file (336); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/ed69b2818021ce11b08edac0298dc4] ~> TaskHandler[id: 1248; name: POREC:to_pairs_file (337); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/ca8080e6f9241b40d03c08cb39638d] ~> TaskHandler[id: 1249; name: POREC:to_pairs_file (338); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/b3ba488610b774d692a5392e0c1016] ~> TaskHandler[id: 1250; name: POREC:to_pairs_file (339); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/9ba0206062534511e875f119bc48a4] ~> TaskHandler[id: 1251; name: POREC:to_pairs_file (340); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/6caa11cea7581e84ad870e756c5cfa] ~> TaskHandler[id: 1252; name: POREC:to_pairs_file (341); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/e20cc1085f83d75ea4b16dc5df4b25] ~> TaskHandler[id: 1253; name: POREC:to_pairs_file (342); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/a9070bcd93c50be6ca1f70b7f299d4] ~> TaskHandler[id: 1254; name: POREC:to_pairs_file (343); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/cce6305f8018b21b68f34ea492c56d] ~> TaskHandler[id: 1255; name: POREC:to_pairs_file (344); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/4e9031dfb36c3fe8f2aa918b39916d] .. remaining tasks omitted. Aug-18 07:47:35.867 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1245; name: POREC:to_pairs_file (334); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/3778c1d5f7a09ce1458eff41c23182] Aug-18 07:47:35.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:47:35.872 [Task submitter] INFO nextflow.Session - [f6/a936ca] Submitted process > POREC:to_pairs_file (335) Aug-18 07:48:50.585 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1246; name: POREC:to_pairs_file (335); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/a936ca481852f794c3293a703250ec] Aug-18 07:49:09.554 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1246; name: POREC:to_pairs_file (335); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/a936ca481852f794c3293a703250ec] Aug-18 07:49:09.558 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:49:09.558 [Task submitter] INFO nextflow.Session - [ce/ed69b2] Submitted process > POREC:to_pairs_file (336) Aug-18 07:50:43.491 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1247; name: POREC:to_pairs_file (336); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/ed69b2818021ce11b08edac0298dc4] Aug-18 07:50:43.511 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:50:43.511 [Task submitter] INFO nextflow.Session - [7b/ca8080] Submitted process > POREC:to_pairs_file (337) Aug-18 07:52:11.684 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 568 -- tasks to be submitted are shown below ~> TaskHandler[id: 1249; name: POREC:to_pairs_file (338); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/b3ba488610b774d692a5392e0c1016] ~> TaskHandler[id: 1250; name: POREC:to_pairs_file (339); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/9ba0206062534511e875f119bc48a4] ~> TaskHandler[id: 1251; name: POREC:to_pairs_file (340); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/6caa11cea7581e84ad870e756c5cfa] ~> TaskHandler[id: 1252; name: POREC:to_pairs_file (341); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/e20cc1085f83d75ea4b16dc5df4b25] ~> TaskHandler[id: 1253; name: POREC:to_pairs_file (342); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/a9070bcd93c50be6ca1f70b7f299d4] ~> TaskHandler[id: 1254; name: POREC:to_pairs_file (343); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/cce6305f8018b21b68f34ea492c56d] ~> TaskHandler[id: 1255; name: POREC:to_pairs_file (344); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/4e9031dfb36c3fe8f2aa918b39916d] ~> TaskHandler[id: 1256; name: POREC:to_pairs_file (345); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/fef7864609ac572806edc87f37d299] ~> TaskHandler[id: 1257; name: POREC:to_pairs_file (346); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/b8f46db990fc7a302348ef711cb6f9] ~> TaskHandler[id: 1258; name: POREC:to_pairs_file (347); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/f12c877087d230c51ae3b840180639] .. remaining tasks omitted. Aug-18 07:52:17.781 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1248; name: POREC:to_pairs_file (337); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/ca8080e6f9241b40d03c08cb39638d] Aug-18 07:52:17.785 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:52:17.795 [Task submitter] INFO nextflow.Session - [38/b3ba48] Submitted process > POREC:to_pairs_file (338) Aug-18 07:53:50.661 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1249; name: POREC:to_pairs_file (338); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/b3ba488610b774d692a5392e0c1016] Aug-18 07:53:51.029 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1249; name: POREC:to_pairs_file (338); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/b3ba488610b774d692a5392e0c1016] Aug-18 07:53:51.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:53:51.062 [Task submitter] INFO nextflow.Session - [51/9ba020] Submitted process > POREC:to_pairs_file (339) Aug-18 07:55:24.356 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1250; name: POREC:to_pairs_file (339); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/9ba0206062534511e875f119bc48a4] Aug-18 07:55:24.391 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:55:24.391 [Task submitter] INFO nextflow.Session - [cb/6caa11] Submitted process > POREC:to_pairs_file (340) Aug-18 07:56:56.786 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1251; name: POREC:to_pairs_file (340); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/6caa11cea7581e84ad870e756c5cfa] Aug-18 07:56:56.817 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:56:56.817 [Task submitter] INFO nextflow.Session - [8e/e20cc1] Submitted process > POREC:to_pairs_file (341) Aug-18 07:57:11.855 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 564 -- tasks to be submitted are shown below ~> TaskHandler[id: 1253; name: POREC:to_pairs_file (342); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/a9070bcd93c50be6ca1f70b7f299d4] ~> TaskHandler[id: 1254; name: POREC:to_pairs_file (343); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/cce6305f8018b21b68f34ea492c56d] ~> TaskHandler[id: 1255; name: POREC:to_pairs_file (344); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/4e9031dfb36c3fe8f2aa918b39916d] ~> TaskHandler[id: 1256; name: POREC:to_pairs_file (345); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/fef7864609ac572806edc87f37d299] ~> TaskHandler[id: 1257; name: POREC:to_pairs_file (346); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/b8f46db990fc7a302348ef711cb6f9] ~> TaskHandler[id: 1258; name: POREC:to_pairs_file (347); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/f12c877087d230c51ae3b840180639] ~> TaskHandler[id: 1259; name: POREC:to_pairs_file (348); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/9e3e09b3f18238409a688b9d60dcc8] ~> TaskHandler[id: 1260; name: POREC:to_pairs_file (349); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/c6b6d5645a3e917fb1f18b869bc2e9] ~> TaskHandler[id: 1261; name: POREC:to_pairs_file (350); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/527ecf27a72f2da0934f77fc6737be] ~> TaskHandler[id: 1262; name: POREC:to_pairs_file (351); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ea6d4ddec15cc35584afda08027af3] .. remaining tasks omitted. Aug-18 07:58:30.642 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1252; name: POREC:to_pairs_file (341); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/e20cc1085f83d75ea4b16dc5df4b25] Aug-18 07:58:30.687 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 07:58:30.687 [Task submitter] INFO nextflow.Session - [dd/a9070b] Submitted process > POREC:to_pairs_file (342) Aug-18 07:58:50.701 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1253; name: POREC:to_pairs_file (342); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/a9070bcd93c50be6ca1f70b7f299d4] Aug-18 08:00:05.517 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1253; name: POREC:to_pairs_file (342); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/a9070bcd93c50be6ca1f70b7f299d4] Aug-18 08:00:05.548 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:00:05.548 [Task submitter] INFO nextflow.Session - [65/cce630] Submitted process > POREC:to_pairs_file (343) Aug-18 08:01:39.527 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1254; name: POREC:to_pairs_file (343); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/cce6305f8018b21b68f34ea492c56d] Aug-18 08:01:39.569 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:01:39.569 [Task submitter] INFO nextflow.Session - [84/4e9031] Submitted process > POREC:to_pairs_file (344) Aug-18 08:02:12.637 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 561 -- tasks to be submitted are shown below ~> TaskHandler[id: 1256; name: POREC:to_pairs_file (345); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/fef7864609ac572806edc87f37d299] ~> TaskHandler[id: 1257; name: POREC:to_pairs_file (346); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/b8f46db990fc7a302348ef711cb6f9] ~> TaskHandler[id: 1258; name: POREC:to_pairs_file (347); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/f12c877087d230c51ae3b840180639] ~> TaskHandler[id: 1259; name: POREC:to_pairs_file (348); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/9e3e09b3f18238409a688b9d60dcc8] ~> TaskHandler[id: 1260; name: POREC:to_pairs_file (349); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/c6b6d5645a3e917fb1f18b869bc2e9] ~> TaskHandler[id: 1261; name: POREC:to_pairs_file (350); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/527ecf27a72f2da0934f77fc6737be] ~> TaskHandler[id: 1262; name: POREC:to_pairs_file (351); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ea6d4ddec15cc35584afda08027af3] ~> TaskHandler[id: 1263; name: POREC:to_pairs_file (352); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/8f71838427d78c2f0065a9f545a9df] ~> TaskHandler[id: 1264; name: POREC:to_pairs_file (353); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/720ac3c2d939ed24ff4c9b132564c6] ~> TaskHandler[id: 1265; name: POREC:to_pairs_file (354); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/1a41f1f740de349db51edde243ff9f] .. remaining tasks omitted. Aug-18 08:03:12.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1255; name: POREC:to_pairs_file (344); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/84/4e9031dfb36c3fe8f2aa918b39916d] Aug-18 08:03:12.983 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:03:12.983 [Task submitter] INFO nextflow.Session - [ed/fef786] Submitted process > POREC:to_pairs_file (345) Aug-18 08:03:50.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1256; name: POREC:to_pairs_file (345); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/fef7864609ac572806edc87f37d299] Aug-18 08:04:47.937 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1256; name: POREC:to_pairs_file (345); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/fef7864609ac572806edc87f37d299] Aug-18 08:04:47.941 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:04:47.941 [Task submitter] INFO nextflow.Session - [c1/b8f46d] Submitted process > POREC:to_pairs_file (346) Aug-18 08:06:22.287 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1257; name: POREC:to_pairs_file (346); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/b8f46db990fc7a302348ef711cb6f9] Aug-18 08:06:22.319 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:06:22.319 [Task submitter] INFO nextflow.Session - [38/f12c87] Submitted process > POREC:to_pairs_file (347) Aug-18 08:07:13.427 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 558 -- tasks to be submitted are shown below ~> TaskHandler[id: 1259; name: POREC:to_pairs_file (348); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/9e3e09b3f18238409a688b9d60dcc8] ~> TaskHandler[id: 1260; name: POREC:to_pairs_file (349); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/c6b6d5645a3e917fb1f18b869bc2e9] ~> TaskHandler[id: 1261; name: POREC:to_pairs_file (350); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/527ecf27a72f2da0934f77fc6737be] ~> TaskHandler[id: 1262; name: POREC:to_pairs_file (351); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ea6d4ddec15cc35584afda08027af3] ~> TaskHandler[id: 1263; name: POREC:to_pairs_file (352); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/8f71838427d78c2f0065a9f545a9df] ~> TaskHandler[id: 1264; name: POREC:to_pairs_file (353); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/720ac3c2d939ed24ff4c9b132564c6] ~> TaskHandler[id: 1265; name: POREC:to_pairs_file (354); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/1a41f1f740de349db51edde243ff9f] ~> TaskHandler[id: 1266; name: POREC:to_pairs_file (355); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/6e0f8a2188aa06a9666cab47ef9d63] ~> TaskHandler[id: 1267; name: POREC:to_pairs_file (356); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/18ab33b2eff79f64595f9147d62726] ~> TaskHandler[id: 1268; name: POREC:to_pairs_file (357); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/1234c78c37ead8ff0dae507a376666] .. remaining tasks omitted. Aug-18 08:07:57.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1258; name: POREC:to_pairs_file (347); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/38/f12c877087d230c51ae3b840180639] Aug-18 08:07:57.358 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:07:57.358 [Task submitter] INFO nextflow.Session - [4f/9e3e09] Submitted process > POREC:to_pairs_file (348) Aug-18 08:08:50.755 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1259; name: POREC:to_pairs_file (348); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/9e3e09b3f18238409a688b9d60dcc8] Aug-18 08:09:32.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1259; name: POREC:to_pairs_file (348); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/9e3e09b3f18238409a688b9d60dcc8] Aug-18 08:09:32.289 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:09:32.289 [Task submitter] INFO nextflow.Session - [c2/c6b6d5] Submitted process > POREC:to_pairs_file (349) Aug-18 08:11:05.679 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1260; name: POREC:to_pairs_file (349); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/c6b6d5645a3e917fb1f18b869bc2e9] Aug-18 08:11:05.695 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:11:05.695 [Task submitter] INFO nextflow.Session - [76/527ecf] Submitted process > POREC:to_pairs_file (350) Aug-18 08:12:13.823 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 555 -- tasks to be submitted are shown below ~> TaskHandler[id: 1262; name: POREC:to_pairs_file (351); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ea6d4ddec15cc35584afda08027af3] ~> TaskHandler[id: 1263; name: POREC:to_pairs_file (352); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/8f71838427d78c2f0065a9f545a9df] ~> TaskHandler[id: 1264; name: POREC:to_pairs_file (353); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/720ac3c2d939ed24ff4c9b132564c6] ~> TaskHandler[id: 1265; name: POREC:to_pairs_file (354); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/1a41f1f740de349db51edde243ff9f] ~> TaskHandler[id: 1266; name: POREC:to_pairs_file (355); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/6e0f8a2188aa06a9666cab47ef9d63] ~> TaskHandler[id: 1267; name: POREC:to_pairs_file (356); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/18ab33b2eff79f64595f9147d62726] ~> TaskHandler[id: 1268; name: POREC:to_pairs_file (357); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/1234c78c37ead8ff0dae507a376666] ~> TaskHandler[id: 1269; name: POREC:to_pairs_file (358); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/e542f1f13ef50b40e510ec9f049c50] ~> TaskHandler[id: 1270; name: POREC:to_pairs_file (359); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/ec1a10512456ff79df6f71dd441390] ~> TaskHandler[id: 1271; name: POREC:to_pairs_file (360); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/a7f617d5f023875b51df2d84ff2efe] .. remaining tasks omitted. Aug-18 08:12:39.621 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1261; name: POREC:to_pairs_file (350); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/527ecf27a72f2da0934f77fc6737be] Aug-18 08:12:39.642 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:12:39.643 [Task submitter] INFO nextflow.Session - [96/ea6d4d] Submitted process > POREC:to_pairs_file (351) Aug-18 08:13:50.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1262; name: POREC:to_pairs_file (351); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ea6d4ddec15cc35584afda08027af3] Aug-18 08:14:12.250 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1262; name: POREC:to_pairs_file (351); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/ea6d4ddec15cc35584afda08027af3] Aug-18 08:14:12.276 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:14:12.276 [Task submitter] INFO nextflow.Session - [35/8f7183] Submitted process > POREC:to_pairs_file (352) Aug-18 08:15:46.329 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1263; name: POREC:to_pairs_file (352); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/8f71838427d78c2f0065a9f545a9df] Aug-18 08:15:46.360 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:15:46.360 [Task submitter] INFO nextflow.Session - [06/720ac3] Submitted process > POREC:to_pairs_file (353) Aug-18 08:17:14.535 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 552 -- tasks to be submitted are shown below ~> TaskHandler[id: 1265; name: POREC:to_pairs_file (354); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/1a41f1f740de349db51edde243ff9f] ~> TaskHandler[id: 1266; name: POREC:to_pairs_file (355); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/6e0f8a2188aa06a9666cab47ef9d63] ~> TaskHandler[id: 1267; name: POREC:to_pairs_file (356); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/18ab33b2eff79f64595f9147d62726] ~> TaskHandler[id: 1268; name: POREC:to_pairs_file (357); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/1234c78c37ead8ff0dae507a376666] ~> TaskHandler[id: 1269; name: POREC:to_pairs_file (358); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/e542f1f13ef50b40e510ec9f049c50] ~> TaskHandler[id: 1270; name: POREC:to_pairs_file (359); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/ec1a10512456ff79df6f71dd441390] ~> TaskHandler[id: 1271; name: POREC:to_pairs_file (360); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/a7f617d5f023875b51df2d84ff2efe] ~> TaskHandler[id: 1272; name: POREC:to_pairs_file (361); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/644636c330e62ea41d2702da2c389b] ~> TaskHandler[id: 1273; name: POREC:to_pairs_file (362); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/358f57d8088c6d934ca6e95325b8ab] ~> TaskHandler[id: 1274; name: POREC:to_pairs_file (363); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/ff94b9602dbc41d8665df143f91fc9] .. remaining tasks omitted. Aug-18 08:17:19.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1264; name: POREC:to_pairs_file (353); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/720ac3c2d939ed24ff4c9b132564c6] Aug-18 08:17:19.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:17:19.892 [Task submitter] INFO nextflow.Session - [20/1a41f1] Submitted process > POREC:to_pairs_file (354) Aug-18 08:18:50.879 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1265; name: POREC:to_pairs_file (354); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/1a41f1f740de349db51edde243ff9f] Aug-18 08:18:51.867 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1265; name: POREC:to_pairs_file (354); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/1a41f1f740de349db51edde243ff9f] Aug-18 08:18:51.896 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:18:51.896 [Task submitter] INFO nextflow.Session - [3c/6e0f8a] Submitted process > POREC:to_pairs_file (355) Aug-18 08:20:25.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1266; name: POREC:to_pairs_file (355); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/6e0f8a2188aa06a9666cab47ef9d63] Aug-18 08:20:25.962 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:20:25.962 [Task submitter] INFO nextflow.Session - [87/18ab33] Submitted process > POREC:to_pairs_file (356) Aug-18 08:22:03.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1267; name: POREC:to_pairs_file (356); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/18ab33b2eff79f64595f9147d62726] Aug-18 08:22:03.175 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:22:03.175 [Task submitter] INFO nextflow.Session - [42/1234c7] Submitted process > POREC:to_pairs_file (357) Aug-18 08:22:15.210 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 548 -- tasks to be submitted are shown below ~> TaskHandler[id: 1269; name: POREC:to_pairs_file (358); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/e542f1f13ef50b40e510ec9f049c50] ~> TaskHandler[id: 1270; name: POREC:to_pairs_file (359); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/ec1a10512456ff79df6f71dd441390] ~> TaskHandler[id: 1271; name: POREC:to_pairs_file (360); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/a7f617d5f023875b51df2d84ff2efe] ~> TaskHandler[id: 1272; name: POREC:to_pairs_file (361); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/644636c330e62ea41d2702da2c389b] ~> TaskHandler[id: 1273; name: POREC:to_pairs_file (362); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/358f57d8088c6d934ca6e95325b8ab] ~> TaskHandler[id: 1274; name: POREC:to_pairs_file (363); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/ff94b9602dbc41d8665df143f91fc9] ~> TaskHandler[id: 1275; name: POREC:to_pairs_file (364); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/0e44df01b59627323e07801484e16b] ~> TaskHandler[id: 1276; name: POREC:to_pairs_file (365); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/6570a7db18d314f3f65e6aa2f53690] ~> TaskHandler[id: 1277; name: POREC:to_pairs_file (366); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bb1ab2a95885996e689d4321f41057] ~> TaskHandler[id: 1278; name: POREC:to_pairs_file (367); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/187fa125f4bb0fb0af13f7e2ff0ba7] .. remaining tasks omitted. Aug-18 08:23:37.127 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1268; name: POREC:to_pairs_file (357); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/1234c78c37ead8ff0dae507a376666] Aug-18 08:23:37.160 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:23:37.160 [Task submitter] INFO nextflow.Session - [70/e542f1] Submitted process > POREC:to_pairs_file (358) Aug-18 08:23:50.958 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1269; name: POREC:to_pairs_file (358); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/e542f1f13ef50b40e510ec9f049c50] Aug-18 08:25:12.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1269; name: POREC:to_pairs_file (358); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/e542f1f13ef50b40e510ec9f049c50] Aug-18 08:25:12.858 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:25:12.858 [Task submitter] INFO nextflow.Session - [9e/ec1a10] Submitted process > POREC:to_pairs_file (359) Aug-18 08:26:50.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1270; name: POREC:to_pairs_file (359); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9e/ec1a10512456ff79df6f71dd441390] Aug-18 08:26:50.336 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:26:50.336 [Task submitter] INFO nextflow.Session - [fa/a7f617] Submitted process > POREC:to_pairs_file (360) Aug-18 08:27:15.391 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 545 -- tasks to be submitted are shown below ~> TaskHandler[id: 1272; name: POREC:to_pairs_file (361); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/644636c330e62ea41d2702da2c389b] ~> TaskHandler[id: 1273; name: POREC:to_pairs_file (362); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/358f57d8088c6d934ca6e95325b8ab] ~> TaskHandler[id: 1274; name: POREC:to_pairs_file (363); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/ff94b9602dbc41d8665df143f91fc9] ~> TaskHandler[id: 1275; name: POREC:to_pairs_file (364); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/0e44df01b59627323e07801484e16b] ~> TaskHandler[id: 1276; name: POREC:to_pairs_file (365); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/6570a7db18d314f3f65e6aa2f53690] ~> TaskHandler[id: 1277; name: POREC:to_pairs_file (366); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bb1ab2a95885996e689d4321f41057] ~> TaskHandler[id: 1278; name: POREC:to_pairs_file (367); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/187fa125f4bb0fb0af13f7e2ff0ba7] ~> TaskHandler[id: 1279; name: POREC:to_pairs_file (368); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/140a7b3657b92266460b7fc204af3d] ~> TaskHandler[id: 1280; name: POREC:to_pairs_file (369); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/aaa0914baa9d41fb223a63a5cd6ed6] ~> TaskHandler[id: 1281; name: POREC:to_pairs_file (370); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/dba95288f9b15a185ac1579a38a6e7] .. remaining tasks omitted. Aug-18 08:28:24.620 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1271; name: POREC:to_pairs_file (360); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/a7f617d5f023875b51df2d84ff2efe] Aug-18 08:28:24.663 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:28:24.663 [Task submitter] INFO nextflow.Session - [f4/644636] Submitted process > POREC:to_pairs_file (361) Aug-18 08:28:50.988 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1272; name: POREC:to_pairs_file (361); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/644636c330e62ea41d2702da2c389b] Aug-18 08:30:01.528 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1272; name: POREC:to_pairs_file (361); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f4/644636c330e62ea41d2702da2c389b] Aug-18 08:30:01.558 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:30:01.558 [Task submitter] INFO nextflow.Session - [54/358f57] Submitted process > POREC:to_pairs_file (362) Aug-18 08:31:36.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1273; name: POREC:to_pairs_file (362); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/358f57d8088c6d934ca6e95325b8ab] Aug-18 08:31:36.823 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:31:36.823 [Task submitter] INFO nextflow.Session - [79/ff94b9] Submitted process > POREC:to_pairs_file (363) Aug-18 08:32:15.910 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 542 -- tasks to be submitted are shown below ~> TaskHandler[id: 1275; name: POREC:to_pairs_file (364); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/0e44df01b59627323e07801484e16b] ~> TaskHandler[id: 1276; name: POREC:to_pairs_file (365); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/6570a7db18d314f3f65e6aa2f53690] ~> TaskHandler[id: 1277; name: POREC:to_pairs_file (366); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bb1ab2a95885996e689d4321f41057] ~> TaskHandler[id: 1278; name: POREC:to_pairs_file (367); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/187fa125f4bb0fb0af13f7e2ff0ba7] ~> TaskHandler[id: 1279; name: POREC:to_pairs_file (368); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/140a7b3657b92266460b7fc204af3d] ~> TaskHandler[id: 1280; name: POREC:to_pairs_file (369); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/aaa0914baa9d41fb223a63a5cd6ed6] ~> TaskHandler[id: 1281; name: POREC:to_pairs_file (370); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/dba95288f9b15a185ac1579a38a6e7] ~> TaskHandler[id: 1282; name: POREC:to_pairs_file (371); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6d8e6a55a69534d7f2b9726d523707] ~> TaskHandler[id: 1283; name: POREC:to_pairs_file (372); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7ed88d019e5573ade9679338d7ecbd] ~> TaskHandler[id: 1284; name: POREC:to_pairs_file (373); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/eaaf30f6369a63c30001683d6c96e4] .. remaining tasks omitted. Aug-18 08:33:12.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1274; name: POREC:to_pairs_file (363); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/79/ff94b9602dbc41d8665df143f91fc9] Aug-18 08:33:12.050 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:33:12.051 [Task submitter] INFO nextflow.Session - [3f/0e44df] Submitted process > POREC:to_pairs_file (364) Aug-18 08:33:51.070 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1275; name: POREC:to_pairs_file (364); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/0e44df01b59627323e07801484e16b] Aug-18 08:34:47.146 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1275; name: POREC:to_pairs_file (364); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/0e44df01b59627323e07801484e16b] Aug-18 08:34:47.150 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:34:47.150 [Task submitter] INFO nextflow.Session - [dd/6570a7] Submitted process > POREC:to_pairs_file (365) Aug-18 08:36:21.584 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1276; name: POREC:to_pairs_file (365); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dd/6570a7db18d314f3f65e6aa2f53690] Aug-18 08:36:21.589 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:36:21.589 [Task submitter] INFO nextflow.Session - [a1/bb1ab2] Submitted process > POREC:to_pairs_file (366) Aug-18 08:37:16.759 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 539 -- tasks to be submitted are shown below ~> TaskHandler[id: 1278; name: POREC:to_pairs_file (367); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/187fa125f4bb0fb0af13f7e2ff0ba7] ~> TaskHandler[id: 1279; name: POREC:to_pairs_file (368); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/140a7b3657b92266460b7fc204af3d] ~> TaskHandler[id: 1280; name: POREC:to_pairs_file (369); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/aaa0914baa9d41fb223a63a5cd6ed6] ~> TaskHandler[id: 1281; name: POREC:to_pairs_file (370); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/dba95288f9b15a185ac1579a38a6e7] ~> TaskHandler[id: 1282; name: POREC:to_pairs_file (371); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6d8e6a55a69534d7f2b9726d523707] ~> TaskHandler[id: 1283; name: POREC:to_pairs_file (372); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7ed88d019e5573ade9679338d7ecbd] ~> TaskHandler[id: 1284; name: POREC:to_pairs_file (373); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/eaaf30f6369a63c30001683d6c96e4] ~> TaskHandler[id: 1285; name: POREC:to_pairs_file (374); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/c1503c3675544fe1983de3dae75ac2] ~> TaskHandler[id: 1286; name: POREC:to_pairs_file (375); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/67bcfd7db4b5010f588c9f81563394] ~> TaskHandler[id: 1287; name: POREC:to_pairs_file (376); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/9b7751f3677863e8a39cf93a5b3d80] .. remaining tasks omitted. Aug-18 08:38:42.994 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1277; name: POREC:to_pairs_file (366); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bb1ab2a95885996e689d4321f41057] Aug-18 08:38:43.005 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:38:43.005 [Task submitter] INFO nextflow.Session - [ec/187fa1] Submitted process > POREC:to_pairs_file (367) Aug-18 08:38:51.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1278; name: POREC:to_pairs_file (367); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/187fa125f4bb0fb0af13f7e2ff0ba7] Aug-18 08:40:16.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1278; name: POREC:to_pairs_file (367); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ec/187fa125f4bb0fb0af13f7e2ff0ba7] Aug-18 08:40:16.540 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:40:16.541 [Task submitter] INFO nextflow.Session - [cc/140a7b] Submitted process > POREC:to_pairs_file (368) Aug-18 08:41:51.832 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1279; name: POREC:to_pairs_file (368); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/140a7b3657b92266460b7fc204af3d] Aug-18 08:41:51.838 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:41:51.839 [Task submitter] INFO nextflow.Session - [a9/aaa091] Submitted process > POREC:to_pairs_file (369) Aug-18 08:42:16.886 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 536 -- tasks to be submitted are shown below ~> TaskHandler[id: 1281; name: POREC:to_pairs_file (370); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/dba95288f9b15a185ac1579a38a6e7] ~> TaskHandler[id: 1282; name: POREC:to_pairs_file (371); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6d8e6a55a69534d7f2b9726d523707] ~> TaskHandler[id: 1283; name: POREC:to_pairs_file (372); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7ed88d019e5573ade9679338d7ecbd] ~> TaskHandler[id: 1284; name: POREC:to_pairs_file (373); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/eaaf30f6369a63c30001683d6c96e4] ~> TaskHandler[id: 1285; name: POREC:to_pairs_file (374); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/c1503c3675544fe1983de3dae75ac2] ~> TaskHandler[id: 1286; name: POREC:to_pairs_file (375); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/67bcfd7db4b5010f588c9f81563394] ~> TaskHandler[id: 1287; name: POREC:to_pairs_file (376); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/9b7751f3677863e8a39cf93a5b3d80] ~> TaskHandler[id: 1288; name: POREC:to_pairs_file (377); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a6d51b49ef3ca2863f39b87dd8d015] ~> TaskHandler[id: 1289; name: POREC:to_pairs_file (378); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/dec71e002488c0c0d99d2610c20643] ~> TaskHandler[id: 1290; name: POREC:to_pairs_file (379); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/0ee72215780c39d9ee82570af981eb] .. remaining tasks omitted. Aug-18 08:43:27.085 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1280; name: POREC:to_pairs_file (369); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/aaa0914baa9d41fb223a63a5cd6ed6] Aug-18 08:43:27.108 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:43:27.109 [Task submitter] INFO nextflow.Session - [72/dba952] Submitted process > POREC:to_pairs_file (370) Aug-18 08:43:51.146 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1281; name: POREC:to_pairs_file (370); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/dba95288f9b15a185ac1579a38a6e7] Aug-18 08:45:01.252 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1281; name: POREC:to_pairs_file (370); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/dba95288f9b15a185ac1579a38a6e7] Aug-18 08:45:01.257 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:45:01.257 [Task submitter] INFO nextflow.Session - [2c/6d8e6a] Submitted process > POREC:to_pairs_file (371) Aug-18 08:46:36.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1282; name: POREC:to_pairs_file (371); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2c/6d8e6a55a69534d7f2b9726d523707] Aug-18 08:46:36.496 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:46:36.496 [Task submitter] INFO nextflow.Session - [a3/7ed88d] Submitted process > POREC:to_pairs_file (372) Aug-18 08:47:17.593 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 533 -- tasks to be submitted are shown below ~> TaskHandler[id: 1284; name: POREC:to_pairs_file (373); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/eaaf30f6369a63c30001683d6c96e4] ~> TaskHandler[id: 1285; name: POREC:to_pairs_file (374); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/c1503c3675544fe1983de3dae75ac2] ~> TaskHandler[id: 1286; name: POREC:to_pairs_file (375); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/67bcfd7db4b5010f588c9f81563394] ~> TaskHandler[id: 1287; name: POREC:to_pairs_file (376); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/9b7751f3677863e8a39cf93a5b3d80] ~> TaskHandler[id: 1288; name: POREC:to_pairs_file (377); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a6d51b49ef3ca2863f39b87dd8d015] ~> TaskHandler[id: 1289; name: POREC:to_pairs_file (378); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/dec71e002488c0c0d99d2610c20643] ~> TaskHandler[id: 1290; name: POREC:to_pairs_file (379); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/0ee72215780c39d9ee82570af981eb] ~> TaskHandler[id: 1291; name: POREC:to_pairs_file (380); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/f07a3d5651f81b5a67444a291ffcb4] ~> TaskHandler[id: 1292; name: POREC:to_pairs_file (381); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/43372d14be73d7cc63d7b3220f3de4] ~> TaskHandler[id: 1293; name: POREC:to_pairs_file (382); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/d47868d3153577f2038722b69bc636] .. remaining tasks omitted. Aug-18 08:48:51.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1283; name: POREC:to_pairs_file (372); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7ed88d019e5573ade9679338d7ecbd] Aug-18 08:48:55.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1283; name: POREC:to_pairs_file (372); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/7ed88d019e5573ade9679338d7ecbd] Aug-18 08:48:55.272 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:48:55.272 [Task submitter] INFO nextflow.Session - [a2/eaaf30] Submitted process > POREC:to_pairs_file (373) Aug-18 08:50:31.008 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1284; name: POREC:to_pairs_file (373); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/eaaf30f6369a63c30001683d6c96e4] Aug-18 08:50:31.013 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:50:31.013 [Task submitter] INFO nextflow.Session - [40/c1503c] Submitted process > POREC:to_pairs_file (374) Aug-18 08:52:03.952 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1285; name: POREC:to_pairs_file (374); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/c1503c3675544fe1983de3dae75ac2] Aug-18 08:52:03.958 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:52:03.958 [Task submitter] INFO nextflow.Session - [49/67bcfd] Submitted process > POREC:to_pairs_file (375) Aug-18 08:52:17.992 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 530 -- tasks to be submitted are shown below ~> TaskHandler[id: 1287; name: POREC:to_pairs_file (376); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/9b7751f3677863e8a39cf93a5b3d80] ~> TaskHandler[id: 1288; name: POREC:to_pairs_file (377); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a6d51b49ef3ca2863f39b87dd8d015] ~> TaskHandler[id: 1289; name: POREC:to_pairs_file (378); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/dec71e002488c0c0d99d2610c20643] ~> TaskHandler[id: 1290; name: POREC:to_pairs_file (379); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/0ee72215780c39d9ee82570af981eb] ~> TaskHandler[id: 1291; name: POREC:to_pairs_file (380); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/f07a3d5651f81b5a67444a291ffcb4] ~> TaskHandler[id: 1292; name: POREC:to_pairs_file (381); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/43372d14be73d7cc63d7b3220f3de4] ~> TaskHandler[id: 1293; name: POREC:to_pairs_file (382); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/d47868d3153577f2038722b69bc636] ~> TaskHandler[id: 1294; name: POREC:to_pairs_file (383); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/5c6bd4f9341fe72491f3c624adc259] ~> TaskHandler[id: 1295; name: POREC:to_pairs_file (384); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/6280d416fd617d3e4e3f5ce5b7c0d6] ~> TaskHandler[id: 1296; name: POREC:to_pairs_file (385); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/491c55ffabae0e0d7c8ab47ef1f2db] .. remaining tasks omitted. Aug-18 08:53:39.179 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1286; name: POREC:to_pairs_file (375); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/49/67bcfd7db4b5010f588c9f81563394] Aug-18 08:53:39.219 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:53:39.219 [Task submitter] INFO nextflow.Session - [7c/9b7751] Submitted process > POREC:to_pairs_file (376) Aug-18 08:53:51.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1287; name: POREC:to_pairs_file (376); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/9b7751f3677863e8a39cf93a5b3d80] Aug-18 08:55:12.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1287; name: POREC:to_pairs_file (376); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7c/9b7751f3677863e8a39cf93a5b3d80] Aug-18 08:55:12.662 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:55:12.662 [Task submitter] INFO nextflow.Session - [15/a6d51b] Submitted process > POREC:to_pairs_file (377) Aug-18 08:56:46.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1288; name: POREC:to_pairs_file (377); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/a6d51b49ef3ca2863f39b87dd8d015] Aug-18 08:56:46.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:56:46.222 [Task submitter] INFO nextflow.Session - [b2/dec71e] Submitted process > POREC:to_pairs_file (378) Aug-18 08:57:18.275 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 527 -- tasks to be submitted are shown below ~> TaskHandler[id: 1290; name: POREC:to_pairs_file (379); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/0ee72215780c39d9ee82570af981eb] ~> TaskHandler[id: 1291; name: POREC:to_pairs_file (380); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/f07a3d5651f81b5a67444a291ffcb4] ~> TaskHandler[id: 1292; name: POREC:to_pairs_file (381); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/43372d14be73d7cc63d7b3220f3de4] ~> TaskHandler[id: 1293; name: POREC:to_pairs_file (382); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/d47868d3153577f2038722b69bc636] ~> TaskHandler[id: 1294; name: POREC:to_pairs_file (383); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/5c6bd4f9341fe72491f3c624adc259] ~> TaskHandler[id: 1295; name: POREC:to_pairs_file (384); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/6280d416fd617d3e4e3f5ce5b7c0d6] ~> TaskHandler[id: 1296; name: POREC:to_pairs_file (385); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/491c55ffabae0e0d7c8ab47ef1f2db] ~> TaskHandler[id: 1297; name: POREC:to_pairs_file (386); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/f8bb55fa492933c54bfffa5308f61b] ~> TaskHandler[id: 1298; name: POREC:to_pairs_file (387); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/9027700dabcbe1f85f431e1772a203] ~> TaskHandler[id: 1299; name: POREC:to_pairs_file (388); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/14374a5bc0e3b223f505c9396fa0fc] .. remaining tasks omitted. Aug-18 08:58:21.514 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1289; name: POREC:to_pairs_file (378); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/dec71e002488c0c0d99d2610c20643] Aug-18 08:58:21.520 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:58:21.520 [Task submitter] INFO nextflow.Session - [3e/0ee722] Submitted process > POREC:to_pairs_file (379) Aug-18 08:58:51.356 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1290; name: POREC:to_pairs_file (379); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/0ee72215780c39d9ee82570af981eb] Aug-18 08:59:56.473 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1290; name: POREC:to_pairs_file (379); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/0ee72215780c39d9ee82570af981eb] Aug-18 08:59:56.485 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 08:59:56.485 [Task submitter] INFO nextflow.Session - [7b/f07a3d] Submitted process > POREC:to_pairs_file (380) Aug-18 09:01:30.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1291; name: POREC:to_pairs_file (380); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/f07a3d5651f81b5a67444a291ffcb4] Aug-18 09:01:30.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:01:30.379 [Task submitter] INFO nextflow.Session - [3f/43372d] Submitted process > POREC:to_pairs_file (381) Aug-18 09:02:18.476 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 524 -- tasks to be submitted are shown below ~> TaskHandler[id: 1293; name: POREC:to_pairs_file (382); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/d47868d3153577f2038722b69bc636] ~> TaskHandler[id: 1294; name: POREC:to_pairs_file (383); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/5c6bd4f9341fe72491f3c624adc259] ~> TaskHandler[id: 1295; name: POREC:to_pairs_file (384); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/6280d416fd617d3e4e3f5ce5b7c0d6] ~> TaskHandler[id: 1296; name: POREC:to_pairs_file (385); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/491c55ffabae0e0d7c8ab47ef1f2db] ~> TaskHandler[id: 1297; name: POREC:to_pairs_file (386); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/f8bb55fa492933c54bfffa5308f61b] ~> TaskHandler[id: 1298; name: POREC:to_pairs_file (387); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/9027700dabcbe1f85f431e1772a203] ~> TaskHandler[id: 1299; name: POREC:to_pairs_file (388); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/14374a5bc0e3b223f505c9396fa0fc] ~> TaskHandler[id: 1300; name: POREC:to_pairs_file (389); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/64c6b7d58adecf7347542d87c976b3] ~> TaskHandler[id: 1301; name: POREC:to_pairs_file (390); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/f8ce1a4c2150704052879fc05f47c2] ~> TaskHandler[id: 1302; name: POREC:to_pairs_file (391); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/ad00f413878eb8c539ea4765a74693] .. remaining tasks omitted. Aug-18 09:03:03.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1292; name: POREC:to_pairs_file (381); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/43372d14be73d7cc63d7b3220f3de4] Aug-18 09:03:03.891 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:03:03.891 [Task submitter] INFO nextflow.Session - [19/d47868] Submitted process > POREC:to_pairs_file (382) Aug-18 09:03:51.453 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1293; name: POREC:to_pairs_file (382); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/d47868d3153577f2038722b69bc636] Aug-18 09:04:39.519 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1293; name: POREC:to_pairs_file (382); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/d47868d3153577f2038722b69bc636] Aug-18 09:04:39.551 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:04:39.551 [Task submitter] INFO nextflow.Session - [f6/5c6bd4] Submitted process > POREC:to_pairs_file (383) Aug-18 09:06:13.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1294; name: POREC:to_pairs_file (383); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/5c6bd4f9341fe72491f3c624adc259] Aug-18 09:06:13.251 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:06:13.251 [Task submitter] INFO nextflow.Session - [65/6280d4] Submitted process > POREC:to_pairs_file (384) Aug-18 09:07:19.358 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 521 -- tasks to be submitted are shown below ~> TaskHandler[id: 1296; name: POREC:to_pairs_file (385); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/491c55ffabae0e0d7c8ab47ef1f2db] ~> TaskHandler[id: 1297; name: POREC:to_pairs_file (386); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/f8bb55fa492933c54bfffa5308f61b] ~> TaskHandler[id: 1298; name: POREC:to_pairs_file (387); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/9027700dabcbe1f85f431e1772a203] ~> TaskHandler[id: 1299; name: POREC:to_pairs_file (388); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/14374a5bc0e3b223f505c9396fa0fc] ~> TaskHandler[id: 1300; name: POREC:to_pairs_file (389); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/64c6b7d58adecf7347542d87c976b3] ~> TaskHandler[id: 1301; name: POREC:to_pairs_file (390); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/f8ce1a4c2150704052879fc05f47c2] ~> TaskHandler[id: 1302; name: POREC:to_pairs_file (391); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/ad00f413878eb8c539ea4765a74693] ~> TaskHandler[id: 1303; name: POREC:to_pairs_file (392); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/033f6e08f2b5fd665cbd0a646bb741] ~> TaskHandler[id: 1304; name: POREC:to_pairs_file (393); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/cb8f97ea7dbbfd9bdcd2a034d1c8a4] ~> TaskHandler[id: 1305; name: POREC:to_pairs_file (394); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/b6489910f9f4e68da45df8ec0cb68b] .. remaining tasks omitted. Aug-18 09:07:46.614 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1295; name: POREC:to_pairs_file (384); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/6280d416fd617d3e4e3f5ce5b7c0d6] Aug-18 09:07:46.618 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:07:46.618 [Task submitter] INFO nextflow.Session - [cc/491c55] Submitted process > POREC:to_pairs_file (385) Aug-18 09:08:51.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1296; name: POREC:to_pairs_file (385); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/491c55ffabae0e0d7c8ab47ef1f2db] Aug-18 09:09:19.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1296; name: POREC:to_pairs_file (385); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cc/491c55ffabae0e0d7c8ab47ef1f2db] Aug-18 09:09:19.963 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:09:19.963 [Task submitter] INFO nextflow.Session - [10/f8bb55] Submitted process > POREC:to_pairs_file (386) Aug-18 09:10:53.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1297; name: POREC:to_pairs_file (386); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/f8bb55fa492933c54bfffa5308f61b] Aug-18 09:10:53.906 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:10:53.906 [Task submitter] INFO nextflow.Session - [e7/902770] Submitted process > POREC:to_pairs_file (387) Aug-18 09:12:20.120 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 518 -- tasks to be submitted are shown below ~> TaskHandler[id: 1299; name: POREC:to_pairs_file (388); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/14374a5bc0e3b223f505c9396fa0fc] ~> TaskHandler[id: 1300; name: POREC:to_pairs_file (389); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/64c6b7d58adecf7347542d87c976b3] ~> TaskHandler[id: 1301; name: POREC:to_pairs_file (390); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/f8ce1a4c2150704052879fc05f47c2] ~> TaskHandler[id: 1302; name: POREC:to_pairs_file (391); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/ad00f413878eb8c539ea4765a74693] ~> TaskHandler[id: 1303; name: POREC:to_pairs_file (392); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/033f6e08f2b5fd665cbd0a646bb741] ~> TaskHandler[id: 1304; name: POREC:to_pairs_file (393); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/cb8f97ea7dbbfd9bdcd2a034d1c8a4] ~> TaskHandler[id: 1305; name: POREC:to_pairs_file (394); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/b6489910f9f4e68da45df8ec0cb68b] ~> TaskHandler[id: 1306; name: POREC:to_pairs_file (395); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9b9dd516c753bb0fcc5fbb7bc20dbc] ~> TaskHandler[id: 1307; name: POREC:to_pairs_file (396); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/02b1349b23f98ccf2f5fea783c9e94] ~> TaskHandler[id: 1308; name: POREC:to_pairs_file (397); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/28e8ef6bc8bfc0e43ffdbc7d6a57a4] .. remaining tasks omitted. Aug-18 09:13:08.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1298; name: POREC:to_pairs_file (387); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/9027700dabcbe1f85f431e1772a203] Aug-18 09:13:08.900 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:13:08.900 [Task submitter] INFO nextflow.Session - [4e/14374a] Submitted process > POREC:to_pairs_file (388) Aug-18 09:13:51.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1299; name: POREC:to_pairs_file (388); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/14374a5bc0e3b223f505c9396fa0fc] Aug-18 09:14:45.693 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1299; name: POREC:to_pairs_file (388); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/14374a5bc0e3b223f505c9396fa0fc] Aug-18 09:14:45.704 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:14:45.704 [Task submitter] INFO nextflow.Session - [6a/64c6b7] Submitted process > POREC:to_pairs_file (389) Aug-18 09:16:18.297 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1300; name: POREC:to_pairs_file (389); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/64c6b7d58adecf7347542d87c976b3] Aug-18 09:16:18.332 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:16:18.332 [Task submitter] INFO nextflow.Session - [30/f8ce1a] Submitted process > POREC:to_pairs_file (390) Aug-18 09:17:20.451 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 515 -- tasks to be submitted are shown below ~> TaskHandler[id: 1302; name: POREC:to_pairs_file (391); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/ad00f413878eb8c539ea4765a74693] ~> TaskHandler[id: 1303; name: POREC:to_pairs_file (392); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/033f6e08f2b5fd665cbd0a646bb741] ~> TaskHandler[id: 1304; name: POREC:to_pairs_file (393); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/cb8f97ea7dbbfd9bdcd2a034d1c8a4] ~> TaskHandler[id: 1305; name: POREC:to_pairs_file (394); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/b6489910f9f4e68da45df8ec0cb68b] ~> TaskHandler[id: 1306; name: POREC:to_pairs_file (395); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9b9dd516c753bb0fcc5fbb7bc20dbc] ~> TaskHandler[id: 1307; name: POREC:to_pairs_file (396); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/02b1349b23f98ccf2f5fea783c9e94] ~> TaskHandler[id: 1308; name: POREC:to_pairs_file (397); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/28e8ef6bc8bfc0e43ffdbc7d6a57a4] ~> TaskHandler[id: 1309; name: POREC:to_pairs_file (398); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3c8b65b9eb1603ddd0f92000395013] ~> TaskHandler[id: 1310; name: POREC:to_pairs_file (399); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/6546fafc7b27c999eea00832a08afe] ~> TaskHandler[id: 1311; name: POREC:to_pairs_file (400); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/b4f44db146db51145487647c8a9fb9] .. remaining tasks omitted. Aug-18 09:17:51.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1301; name: POREC:to_pairs_file (390); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/f8ce1a4c2150704052879fc05f47c2] Aug-18 09:17:51.355 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:17:51.355 [Task submitter] INFO nextflow.Session - [4c/ad00f4] Submitted process > POREC:to_pairs_file (391) Aug-18 09:18:51.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1302; name: POREC:to_pairs_file (391); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/ad00f413878eb8c539ea4765a74693] Aug-18 09:19:24.522 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1302; name: POREC:to_pairs_file (391); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4c/ad00f413878eb8c539ea4765a74693] Aug-18 09:19:24.529 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:19:24.530 [Task submitter] INFO nextflow.Session - [8c/033f6e] Submitted process > POREC:to_pairs_file (392) Aug-18 09:20:57.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1303; name: POREC:to_pairs_file (392); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/033f6e08f2b5fd665cbd0a646bb741] Aug-18 09:20:57.622 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:20:57.622 [Task submitter] INFO nextflow.Session - [81/cb8f97] Submitted process > POREC:to_pairs_file (393) Aug-18 09:22:20.768 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 512 -- tasks to be submitted are shown below ~> TaskHandler[id: 1305; name: POREC:to_pairs_file (394); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/b6489910f9f4e68da45df8ec0cb68b] ~> TaskHandler[id: 1306; name: POREC:to_pairs_file (395); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9b9dd516c753bb0fcc5fbb7bc20dbc] ~> TaskHandler[id: 1307; name: POREC:to_pairs_file (396); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/02b1349b23f98ccf2f5fea783c9e94] ~> TaskHandler[id: 1308; name: POREC:to_pairs_file (397); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/28e8ef6bc8bfc0e43ffdbc7d6a57a4] ~> TaskHandler[id: 1309; name: POREC:to_pairs_file (398); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3c8b65b9eb1603ddd0f92000395013] ~> TaskHandler[id: 1310; name: POREC:to_pairs_file (399); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/6546fafc7b27c999eea00832a08afe] ~> TaskHandler[id: 1311; name: POREC:to_pairs_file (400); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/b4f44db146db51145487647c8a9fb9] ~> TaskHandler[id: 1312; name: POREC:to_pairs_file (401); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/055f8b748df7dd4311efe3d69fbbc1] ~> TaskHandler[id: 1313; name: POREC:to_pairs_file (402); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/6a32d8325a29c3d5c7302cb8f6dd46] ~> TaskHandler[id: 1314; name: POREC:to_pairs_file (403); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/c599dae8244b065d55fb5362080c8f] .. remaining tasks omitted. Aug-18 09:22:30.854 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1304; name: POREC:to_pairs_file (393); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/cb8f97ea7dbbfd9bdcd2a034d1c8a4] Aug-18 09:22:30.898 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:22:30.898 [Task submitter] INFO nextflow.Session - [e4/b64899] Submitted process > POREC:to_pairs_file (394) Aug-18 09:23:51.579 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1305; name: POREC:to_pairs_file (394); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/b6489910f9f4e68da45df8ec0cb68b] Aug-18 09:24:03.492 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1305; name: POREC:to_pairs_file (394); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/b6489910f9f4e68da45df8ec0cb68b] Aug-18 09:24:03.547 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:24:03.547 [Task submitter] INFO nextflow.Session - [8f/9b9dd5] Submitted process > POREC:to_pairs_file (395) Aug-18 09:25:35.446 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1306; name: POREC:to_pairs_file (395); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/9b9dd516c753bb0fcc5fbb7bc20dbc] Aug-18 09:25:35.469 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:25:35.469 [Task submitter] INFO nextflow.Session - [ac/02b134] Submitted process > POREC:to_pairs_file (396) Aug-18 09:27:11.319 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1307; name: POREC:to_pairs_file (396); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/02b1349b23f98ccf2f5fea783c9e94] Aug-18 09:27:11.329 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:27:11.330 [Task submitter] INFO nextflow.Session - [29/28e8ef] Submitted process > POREC:to_pairs_file (397) Aug-18 09:27:21.360 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 508 -- tasks to be submitted are shown below ~> TaskHandler[id: 1309; name: POREC:to_pairs_file (398); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3c8b65b9eb1603ddd0f92000395013] ~> TaskHandler[id: 1310; name: POREC:to_pairs_file (399); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/6546fafc7b27c999eea00832a08afe] ~> TaskHandler[id: 1311; name: POREC:to_pairs_file (400); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/b4f44db146db51145487647c8a9fb9] ~> TaskHandler[id: 1312; name: POREC:to_pairs_file (401); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/055f8b748df7dd4311efe3d69fbbc1] ~> TaskHandler[id: 1313; name: POREC:to_pairs_file (402); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/6a32d8325a29c3d5c7302cb8f6dd46] ~> TaskHandler[id: 1314; name: POREC:to_pairs_file (403); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/c599dae8244b065d55fb5362080c8f] ~> TaskHandler[id: 1315; name: POREC:to_pairs_file (404); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/452a057ae4204e6af30202784bcd45] ~> TaskHandler[id: 1316; name: POREC:to_pairs_file (405); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/389223778463e365289ea131f7a5e9] ~> TaskHandler[id: 1317; name: POREC:to_pairs_file (406); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/88927ca100175b5f670283eda34842] ~> TaskHandler[id: 1318; name: POREC:to_pairs_file (407); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/13a883af04b9e89f3297862f5aeb71] .. remaining tasks omitted. Aug-18 09:28:45.397 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1308; name: POREC:to_pairs_file (397); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/29/28e8ef6bc8bfc0e43ffdbc7d6a57a4] Aug-18 09:28:45.401 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:28:45.401 [Task submitter] INFO nextflow.Session - [11/3c8b65] Submitted process > POREC:to_pairs_file (398) Aug-18 09:28:51.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1309; name: POREC:to_pairs_file (398); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3c8b65b9eb1603ddd0f92000395013] Aug-18 09:30:19.640 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1309; name: POREC:to_pairs_file (398); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/3c8b65b9eb1603ddd0f92000395013] Aug-18 09:30:19.644 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:30:19.644 [Task submitter] INFO nextflow.Session - [09/6546fa] Submitted process > POREC:to_pairs_file (399) Aug-18 09:31:52.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1310; name: POREC:to_pairs_file (399); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/6546fafc7b27c999eea00832a08afe] Aug-18 09:31:52.581 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:31:52.581 [Task submitter] INFO nextflow.Session - [2f/b4f44d] Submitted process > POREC:to_pairs_file (400) Aug-18 09:32:21.639 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 505 -- tasks to be submitted are shown below ~> TaskHandler[id: 1312; name: POREC:to_pairs_file (401); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/055f8b748df7dd4311efe3d69fbbc1] ~> TaskHandler[id: 1313; name: POREC:to_pairs_file (402); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/6a32d8325a29c3d5c7302cb8f6dd46] ~> TaskHandler[id: 1314; name: POREC:to_pairs_file (403); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/c599dae8244b065d55fb5362080c8f] ~> TaskHandler[id: 1315; name: POREC:to_pairs_file (404); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/452a057ae4204e6af30202784bcd45] ~> TaskHandler[id: 1316; name: POREC:to_pairs_file (405); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/389223778463e365289ea131f7a5e9] ~> TaskHandler[id: 1317; name: POREC:to_pairs_file (406); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/88927ca100175b5f670283eda34842] ~> TaskHandler[id: 1318; name: POREC:to_pairs_file (407); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/13a883af04b9e89f3297862f5aeb71] ~> TaskHandler[id: 1319; name: POREC:to_pairs_file (408); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/44dc09bcfda4c3828cb67fc49f273d] ~> TaskHandler[id: 1320; name: POREC:to_pairs_file (409); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/bc4bf56eee0a0b7a650176137fa2f6] ~> TaskHandler[id: 1321; name: POREC:to_pairs_file (410); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/fe554c436cf357f54ad1899573f877] .. remaining tasks omitted. Aug-18 09:33:26.645 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1311; name: POREC:to_pairs_file (400); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/b4f44db146db51145487647c8a9fb9] Aug-18 09:33:26.667 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:33:26.667 [Task submitter] INFO nextflow.Session - [f8/055f8b] Submitted process > POREC:to_pairs_file (401) Aug-18 09:33:51.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1312; name: POREC:to_pairs_file (401); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/055f8b748df7dd4311efe3d69fbbc1] Aug-18 09:35:01.315 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1312; name: POREC:to_pairs_file (401); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/055f8b748df7dd4311efe3d69fbbc1] Aug-18 09:35:01.320 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:35:01.320 [Task submitter] INFO nextflow.Session - [7f/6a32d8] Submitted process > POREC:to_pairs_file (402) Aug-18 09:36:36.022 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1313; name: POREC:to_pairs_file (402); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/6a32d8325a29c3d5c7302cb8f6dd46] Aug-18 09:36:36.028 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:36:36.028 [Task submitter] INFO nextflow.Session - [5e/c599da] Submitted process > POREC:to_pairs_file (403) Aug-18 09:37:22.134 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 502 -- tasks to be submitted are shown below ~> TaskHandler[id: 1315; name: POREC:to_pairs_file (404); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/452a057ae4204e6af30202784bcd45] ~> TaskHandler[id: 1316; name: POREC:to_pairs_file (405); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/389223778463e365289ea131f7a5e9] ~> TaskHandler[id: 1317; name: POREC:to_pairs_file (406); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/88927ca100175b5f670283eda34842] ~> TaskHandler[id: 1318; name: POREC:to_pairs_file (407); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/13a883af04b9e89f3297862f5aeb71] ~> TaskHandler[id: 1319; name: POREC:to_pairs_file (408); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/44dc09bcfda4c3828cb67fc49f273d] ~> TaskHandler[id: 1320; name: POREC:to_pairs_file (409); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/bc4bf56eee0a0b7a650176137fa2f6] ~> TaskHandler[id: 1321; name: POREC:to_pairs_file (410); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/fe554c436cf357f54ad1899573f877] ~> TaskHandler[id: 1322; name: POREC:to_pairs_file (411); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/05cce69468d44e8af139ff18c976d4] ~> TaskHandler[id: 1323; name: POREC:to_pairs_file (412); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b47561b457bb0eea75f095c130f088] ~> TaskHandler[id: 1324; name: POREC:to_pairs_file (413); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/1a8b45bf4d120e2af0336e26143e1f] .. remaining tasks omitted. Aug-18 09:38:09.923 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1314; name: POREC:to_pairs_file (403); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/c599dae8244b065d55fb5362080c8f] Aug-18 09:38:09.931 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:38:09.931 [Task submitter] INFO nextflow.Session - [17/452a05] Submitted process > POREC:to_pairs_file (404) Aug-18 09:38:51.705 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1315; name: POREC:to_pairs_file (404); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/452a057ae4204e6af30202784bcd45] Aug-18 09:39:44.654 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1315; name: POREC:to_pairs_file (404); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/452a057ae4204e6af30202784bcd45] Aug-18 09:39:44.658 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:39:44.658 [Task submitter] INFO nextflow.Session - [a4/389223] Submitted process > POREC:to_pairs_file (405) Aug-18 09:41:18.236 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1316; name: POREC:to_pairs_file (405); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a4/389223778463e365289ea131f7a5e9] Aug-18 09:41:18.256 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:41:18.256 [Task submitter] INFO nextflow.Session - [6d/88927c] Submitted process > POREC:to_pairs_file (406) Aug-18 09:42:22.369 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 499 -- tasks to be submitted are shown below ~> TaskHandler[id: 1318; name: POREC:to_pairs_file (407); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/13a883af04b9e89f3297862f5aeb71] ~> TaskHandler[id: 1319; name: POREC:to_pairs_file (408); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/44dc09bcfda4c3828cb67fc49f273d] ~> TaskHandler[id: 1320; name: POREC:to_pairs_file (409); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/bc4bf56eee0a0b7a650176137fa2f6] ~> TaskHandler[id: 1321; name: POREC:to_pairs_file (410); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/fe554c436cf357f54ad1899573f877] ~> TaskHandler[id: 1322; name: POREC:to_pairs_file (411); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/05cce69468d44e8af139ff18c976d4] ~> TaskHandler[id: 1323; name: POREC:to_pairs_file (412); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b47561b457bb0eea75f095c130f088] ~> TaskHandler[id: 1324; name: POREC:to_pairs_file (413); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/1a8b45bf4d120e2af0336e26143e1f] ~> TaskHandler[id: 1325; name: POREC:to_pairs_file (414); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/638a5f3f5786352cc5b59f5c9dc6fa] ~> TaskHandler[id: 1326; name: POREC:to_pairs_file (415); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7e/d6b3b2c13402c6e1a5d405c4528850] ~> TaskHandler[id: 1327; name: POREC:to_pairs_file (416); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c168e262eb6f8112dd3bf3773d9321] .. remaining tasks omitted. Aug-18 09:42:53.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1317; name: POREC:to_pairs_file (406); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6d/88927ca100175b5f670283eda34842] Aug-18 09:42:53.110 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:42:53.110 [Task submitter] INFO nextflow.Session - [fb/13a883] Submitted process > POREC:to_pairs_file (407) Aug-18 09:43:51.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1318; name: POREC:to_pairs_file (407); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/13a883af04b9e89f3297862f5aeb71] Aug-18 09:44:25.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1318; name: POREC:to_pairs_file (407); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fb/13a883af04b9e89f3297862f5aeb71] Aug-18 09:44:25.945 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:44:25.945 [Task submitter] INFO nextflow.Session - [69/44dc09] Submitted process > POREC:to_pairs_file (408) Aug-18 09:46:01.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1319; name: POREC:to_pairs_file (408); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/44dc09bcfda4c3828cb67fc49f273d] Aug-18 09:46:01.108 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:46:01.108 [Task submitter] INFO nextflow.Session - [72/bc4bf5] Submitted process > POREC:to_pairs_file (409) Aug-18 09:47:23.264 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 496 -- tasks to be submitted are shown below ~> TaskHandler[id: 1321; name: POREC:to_pairs_file (410); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/fe554c436cf357f54ad1899573f877] ~> TaskHandler[id: 1322; name: POREC:to_pairs_file (411); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/05cce69468d44e8af139ff18c976d4] ~> TaskHandler[id: 1323; name: POREC:to_pairs_file (412); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b47561b457bb0eea75f095c130f088] ~> TaskHandler[id: 1324; name: POREC:to_pairs_file (413); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/1a8b45bf4d120e2af0336e26143e1f] ~> TaskHandler[id: 1325; name: POREC:to_pairs_file (414); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/638a5f3f5786352cc5b59f5c9dc6fa] ~> TaskHandler[id: 1326; name: POREC:to_pairs_file (415); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7e/d6b3b2c13402c6e1a5d405c4528850] ~> TaskHandler[id: 1327; name: POREC:to_pairs_file (416); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c168e262eb6f8112dd3bf3773d9321] ~> TaskHandler[id: 1328; name: POREC:to_pairs_file (417); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/0dfdce8fcee354a6f51c0e02de7008] ~> TaskHandler[id: 1329; name: POREC:to_pairs_file (418); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/97d6885d0114e99ae7dccf9dde9754] ~> TaskHandler[id: 1330; name: POREC:to_pairs_file (419); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/f0e2228b66c9664f8c503a991c1590] .. remaining tasks omitted. Aug-18 09:47:35.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1320; name: POREC:to_pairs_file (409); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/bc4bf56eee0a0b7a650176137fa2f6] Aug-18 09:47:35.385 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:47:35.385 [Task submitter] INFO nextflow.Session - [bc/fe554c] Submitted process > POREC:to_pairs_file (410) Aug-18 09:48:51.780 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1321; name: POREC:to_pairs_file (410); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/fe554c436cf357f54ad1899573f877] Aug-18 09:49:09.234 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1321; name: POREC:to_pairs_file (410); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/fe554c436cf357f54ad1899573f877] Aug-18 09:49:09.240 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:49:09.240 [Task submitter] INFO nextflow.Session - [10/05cce6] Submitted process > POREC:to_pairs_file (411) Aug-18 09:50:44.080 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1322; name: POREC:to_pairs_file (411); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/05cce69468d44e8af139ff18c976d4] Aug-18 09:50:44.085 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:50:44.086 [Task submitter] INFO nextflow.Session - [82/b47561] Submitted process > POREC:to_pairs_file (412) Aug-18 09:52:16.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1323; name: POREC:to_pairs_file (412); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/b47561b457bb0eea75f095c130f088] Aug-18 09:52:16.980 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:52:16.980 [Task submitter] INFO nextflow.Session - [39/1a8b45] Submitted process > POREC:to_pairs_file (413) Aug-18 09:52:24.001 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 492 -- tasks to be submitted are shown below ~> TaskHandler[id: 1325; name: POREC:to_pairs_file (414); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/638a5f3f5786352cc5b59f5c9dc6fa] ~> TaskHandler[id: 1326; name: POREC:to_pairs_file (415); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7e/d6b3b2c13402c6e1a5d405c4528850] ~> TaskHandler[id: 1327; name: POREC:to_pairs_file (416); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c168e262eb6f8112dd3bf3773d9321] ~> TaskHandler[id: 1328; name: POREC:to_pairs_file (417); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/0dfdce8fcee354a6f51c0e02de7008] ~> TaskHandler[id: 1329; name: POREC:to_pairs_file (418); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/97d6885d0114e99ae7dccf9dde9754] ~> TaskHandler[id: 1330; name: POREC:to_pairs_file (419); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/f0e2228b66c9664f8c503a991c1590] ~> TaskHandler[id: 1331; name: POREC:to_pairs_file (420); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/b76884f131a745c62d7e9ed1086f4e] ~> TaskHandler[id: 1332; name: POREC:to_pairs_file (421); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/ca8cb21fecd6c273406d8d1098a80f] ~> TaskHandler[id: 1333; name: POREC:to_pairs_file (422); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/003fd7351897b9bac39ebe5a6abcbf] ~> TaskHandler[id: 1334; name: POREC:to_pairs_file (423); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/d6a880a1ade5b0d14556dbc550f1b7] .. remaining tasks omitted. Aug-18 09:53:51.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1324; name: POREC:to_pairs_file (413); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/1a8b45bf4d120e2af0336e26143e1f] Aug-18 09:53:52.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1324; name: POREC:to_pairs_file (413); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/1a8b45bf4d120e2af0336e26143e1f] Aug-18 09:53:52.710 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:53:52.710 [Task submitter] INFO nextflow.Session - [e4/638a5f] Submitted process > POREC:to_pairs_file (414) Aug-18 09:55:26.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1325; name: POREC:to_pairs_file (414); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/638a5f3f5786352cc5b59f5c9dc6fa] Aug-18 09:55:26.644 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:55:26.644 [Task submitter] INFO nextflow.Session - [7e/d6b3b2] Submitted process > POREC:to_pairs_file (415) Aug-18 09:57:00.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1326; name: POREC:to_pairs_file (415); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7e/d6b3b2c13402c6e1a5d405c4528850] Aug-18 09:57:00.838 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:57:00.838 [Task submitter] INFO nextflow.Session - [c4/c168e2] Submitted process > POREC:to_pairs_file (416) Aug-18 09:57:24.888 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 489 -- tasks to be submitted are shown below ~> TaskHandler[id: 1328; name: POREC:to_pairs_file (417); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/0dfdce8fcee354a6f51c0e02de7008] ~> TaskHandler[id: 1329; name: POREC:to_pairs_file (418); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/97d6885d0114e99ae7dccf9dde9754] ~> TaskHandler[id: 1330; name: POREC:to_pairs_file (419); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/f0e2228b66c9664f8c503a991c1590] ~> TaskHandler[id: 1331; name: POREC:to_pairs_file (420); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/b76884f131a745c62d7e9ed1086f4e] ~> TaskHandler[id: 1332; name: POREC:to_pairs_file (421); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/ca8cb21fecd6c273406d8d1098a80f] ~> TaskHandler[id: 1333; name: POREC:to_pairs_file (422); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/003fd7351897b9bac39ebe5a6abcbf] ~> TaskHandler[id: 1334; name: POREC:to_pairs_file (423); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/d6a880a1ade5b0d14556dbc550f1b7] ~> TaskHandler[id: 1335; name: POREC:to_pairs_file (424); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/1e589ce81da655d91ad41dc765243c] ~> TaskHandler[id: 1336; name: POREC:to_pairs_file (425); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/eecea305b363bf6c2de79e958a3eef] ~> TaskHandler[id: 1337; name: POREC:to_pairs_file (426); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/e3d2fe56ae5cd7594c45c4b6e0a01d] .. remaining tasks omitted. Aug-18 09:58:34.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1327; name: POREC:to_pairs_file (416); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c168e262eb6f8112dd3bf3773d9321] Aug-18 09:58:35.017 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 09:58:35.017 [Task submitter] INFO nextflow.Session - [ba/0dfdce] Submitted process > POREC:to_pairs_file (417) Aug-18 09:58:51.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1328; name: POREC:to_pairs_file (417); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/0dfdce8fcee354a6f51c0e02de7008] Aug-18 10:00:07.395 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1328; name: POREC:to_pairs_file (417); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/0dfdce8fcee354a6f51c0e02de7008] Aug-18 10:00:07.428 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:00:07.428 [Task submitter] INFO nextflow.Session - [aa/97d688] Submitted process > POREC:to_pairs_file (418) Aug-18 10:01:41.484 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1329; name: POREC:to_pairs_file (418); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/97d6885d0114e99ae7dccf9dde9754] Aug-18 10:01:41.489 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:01:41.489 [Task submitter] INFO nextflow.Session - [e8/f0e222] Submitted process > POREC:to_pairs_file (419) Aug-18 10:02:25.579 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 486 -- tasks to be submitted are shown below ~> TaskHandler[id: 1331; name: POREC:to_pairs_file (420); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/b76884f131a745c62d7e9ed1086f4e] ~> TaskHandler[id: 1332; name: POREC:to_pairs_file (421); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/ca8cb21fecd6c273406d8d1098a80f] ~> TaskHandler[id: 1333; name: POREC:to_pairs_file (422); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/003fd7351897b9bac39ebe5a6abcbf] ~> TaskHandler[id: 1334; name: POREC:to_pairs_file (423); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/d6a880a1ade5b0d14556dbc550f1b7] ~> TaskHandler[id: 1335; name: POREC:to_pairs_file (424); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/1e589ce81da655d91ad41dc765243c] ~> TaskHandler[id: 1336; name: POREC:to_pairs_file (425); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/eecea305b363bf6c2de79e958a3eef] ~> TaskHandler[id: 1337; name: POREC:to_pairs_file (426); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/e3d2fe56ae5cd7594c45c4b6e0a01d] ~> TaskHandler[id: 1338; name: POREC:to_pairs_file (427); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/9a6ba43706588aa6366525a02e7928] ~> TaskHandler[id: 1339; name: POREC:to_pairs_file (428); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ce529ca739faf4784e274dc0cb6a7] ~> TaskHandler[id: 1340; name: POREC:to_pairs_file (429); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c3587572ba70ba6df6f5c4120a3484] .. remaining tasks omitted. Aug-18 10:03:16.272 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1330; name: POREC:to_pairs_file (419); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/f0e2228b66c9664f8c503a991c1590] Aug-18 10:03:16.285 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:03:16.285 [Task submitter] INFO nextflow.Session - [54/b76884] Submitted process > POREC:to_pairs_file (420) Aug-18 10:03:51.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1331; name: POREC:to_pairs_file (420); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/b76884f131a745c62d7e9ed1086f4e] Aug-18 10:04:51.077 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1331; name: POREC:to_pairs_file (420); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/b76884f131a745c62d7e9ed1086f4e] Aug-18 10:04:51.105 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:04:51.105 [Task submitter] INFO nextflow.Session - [3e/ca8cb2] Submitted process > POREC:to_pairs_file (421) Aug-18 10:06:25.456 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1332; name: POREC:to_pairs_file (421); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3e/ca8cb21fecd6c273406d8d1098a80f] Aug-18 10:06:25.460 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:06:25.460 [Task submitter] INFO nextflow.Session - [6b/003fd7] Submitted process > POREC:to_pairs_file (422) Aug-18 10:07:25.581 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 483 -- tasks to be submitted are shown below ~> TaskHandler[id: 1334; name: POREC:to_pairs_file (423); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/d6a880a1ade5b0d14556dbc550f1b7] ~> TaskHandler[id: 1335; name: POREC:to_pairs_file (424); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/1e589ce81da655d91ad41dc765243c] ~> TaskHandler[id: 1336; name: POREC:to_pairs_file (425); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/eecea305b363bf6c2de79e958a3eef] ~> TaskHandler[id: 1337; name: POREC:to_pairs_file (426); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/e3d2fe56ae5cd7594c45c4b6e0a01d] ~> TaskHandler[id: 1338; name: POREC:to_pairs_file (427); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/9a6ba43706588aa6366525a02e7928] ~> TaskHandler[id: 1339; name: POREC:to_pairs_file (428); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ce529ca739faf4784e274dc0cb6a7] ~> TaskHandler[id: 1340; name: POREC:to_pairs_file (429); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c3587572ba70ba6df6f5c4120a3484] ~> TaskHandler[id: 1341; name: POREC:to_pairs_file (430); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/d68242fc22c3f210d73a0260d73d1c] ~> TaskHandler[id: 1342; name: POREC:to_pairs_file (431); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/55859ba938475fe0ec367bb9b1497b] ~> TaskHandler[id: 1343; name: POREC:to_pairs_file (432); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/7918c6d9abfcb21c63791a509bd758] .. remaining tasks omitted. Aug-18 10:07:59.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1333; name: POREC:to_pairs_file (422); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/003fd7351897b9bac39ebe5a6abcbf] Aug-18 10:07:59.365 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:07:59.365 [Task submitter] INFO nextflow.Session - [43/d6a880] Submitted process > POREC:to_pairs_file (423) Aug-18 10:08:52.039 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1334; name: POREC:to_pairs_file (423); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/d6a880a1ade5b0d14556dbc550f1b7] Aug-18 10:09:33.396 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1334; name: POREC:to_pairs_file (423); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/d6a880a1ade5b0d14556dbc550f1b7] Aug-18 10:09:33.400 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:09:33.400 [Task submitter] INFO nextflow.Session - [ea/1e589c] Submitted process > POREC:to_pairs_file (424) Aug-18 10:11:06.355 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1335; name: POREC:to_pairs_file (424); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/1e589ce81da655d91ad41dc765243c] Aug-18 10:11:06.360 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:11:06.360 [Task submitter] INFO nextflow.Session - [9b/eecea3] Submitted process > POREC:to_pairs_file (425) Aug-18 10:12:26.505 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 480 -- tasks to be submitted are shown below ~> TaskHandler[id: 1337; name: POREC:to_pairs_file (426); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/e3d2fe56ae5cd7594c45c4b6e0a01d] ~> TaskHandler[id: 1338; name: POREC:to_pairs_file (427); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/9a6ba43706588aa6366525a02e7928] ~> TaskHandler[id: 1339; name: POREC:to_pairs_file (428); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ce529ca739faf4784e274dc0cb6a7] ~> TaskHandler[id: 1340; name: POREC:to_pairs_file (429); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c3587572ba70ba6df6f5c4120a3484] ~> TaskHandler[id: 1341; name: POREC:to_pairs_file (430); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/d68242fc22c3f210d73a0260d73d1c] ~> TaskHandler[id: 1342; name: POREC:to_pairs_file (431); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/55859ba938475fe0ec367bb9b1497b] ~> TaskHandler[id: 1343; name: POREC:to_pairs_file (432); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/7918c6d9abfcb21c63791a509bd758] ~> TaskHandler[id: 1344; name: POREC:to_pairs_file (433); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/6dc7fc0e530dceb5faf205dd60dced] ~> TaskHandler[id: 1345; name: POREC:to_pairs_file (434); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7e/1aa837e5f9577f1f4bde9984f83949] ~> TaskHandler[id: 1346; name: POREC:to_pairs_file (435); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/d4c016d9e3ad36a192a5dbcc0f87d7] .. remaining tasks omitted. Aug-18 10:12:39.115 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1336; name: POREC:to_pairs_file (425); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/eecea305b363bf6c2de79e958a3eef] Aug-18 10:12:39.148 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:12:39.148 [Task submitter] INFO nextflow.Session - [2b/e3d2fe] Submitted process > POREC:to_pairs_file (426) Aug-18 10:13:52.076 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1337; name: POREC:to_pairs_file (426); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/e3d2fe56ae5cd7594c45c4b6e0a01d] Aug-18 10:14:16.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1337; name: POREC:to_pairs_file (426); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2b/e3d2fe56ae5cd7594c45c4b6e0a01d] Aug-18 10:14:16.382 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:14:16.382 [Task submitter] INFO nextflow.Session - [f1/9a6ba4] Submitted process > POREC:to_pairs_file (427) Aug-18 10:15:50.302 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1338; name: POREC:to_pairs_file (427); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/9a6ba43706588aa6366525a02e7928] Aug-18 10:15:50.308 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:15:50.308 [Task submitter] INFO nextflow.Session - [59/6ce529] Submitted process > POREC:to_pairs_file (428) Aug-18 10:17:26.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1339; name: POREC:to_pairs_file (428); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/6ce529ca739faf4784e274dc0cb6a7] Aug-18 10:17:26.850 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:17:26.850 [Task submitter] INFO nextflow.Session - [9d/c35875] Submitted process > POREC:to_pairs_file (429) Aug-18 10:17:26.853 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 476 -- tasks to be submitted are shown below ~> TaskHandler[id: 1341; name: POREC:to_pairs_file (430); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/d68242fc22c3f210d73a0260d73d1c] ~> TaskHandler[id: 1342; name: POREC:to_pairs_file (431); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/55859ba938475fe0ec367bb9b1497b] ~> TaskHandler[id: 1343; name: POREC:to_pairs_file (432); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/7918c6d9abfcb21c63791a509bd758] ~> TaskHandler[id: 1344; name: POREC:to_pairs_file (433); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/6dc7fc0e530dceb5faf205dd60dced] ~> TaskHandler[id: 1345; name: POREC:to_pairs_file (434); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7e/1aa837e5f9577f1f4bde9984f83949] ~> TaskHandler[id: 1346; name: POREC:to_pairs_file (435); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/d4c016d9e3ad36a192a5dbcc0f87d7] ~> TaskHandler[id: 1347; name: POREC:to_pairs_file (436); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/077d1ee8215372b21f6b0cb9cc8970] ~> TaskHandler[id: 1348; name: POREC:to_pairs_file (437); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ef252dbb400beb6e8f92684dbbf6b4] ~> TaskHandler[id: 1349; name: POREC:to_pairs_file (438); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/03b516f9da12b445f5d864cac4bdac] ~> TaskHandler[id: 1350; name: POREC:to_pairs_file (439); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/c1ceb5f48c181fbfdb70cbc39faa1b] .. remaining tasks omitted. Aug-18 10:18:52.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1340; name: POREC:to_pairs_file (429); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c3587572ba70ba6df6f5c4120a3484] Aug-18 10:18:58.381 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1340; name: POREC:to_pairs_file (429); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/c3587572ba70ba6df6f5c4120a3484] Aug-18 10:18:58.415 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:18:58.415 [Task submitter] INFO nextflow.Session - [21/d68242] Submitted process > POREC:to_pairs_file (430) Aug-18 10:20:32.990 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1341; name: POREC:to_pairs_file (430); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/d68242fc22c3f210d73a0260d73d1c] Aug-18 10:20:33.013 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:20:33.013 [Task submitter] INFO nextflow.Session - [58/55859b] Submitted process > POREC:to_pairs_file (431) Aug-18 10:22:07.986 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1342; name: POREC:to_pairs_file (431); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/55859ba938475fe0ec367bb9b1497b] Aug-18 10:22:08.002 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:22:08.002 [Task submitter] INFO nextflow.Session - [de/7918c6] Submitted process > POREC:to_pairs_file (432) Aug-18 10:22:27.065 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 473 -- tasks to be submitted are shown below ~> TaskHandler[id: 1344; name: POREC:to_pairs_file (433); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/6dc7fc0e530dceb5faf205dd60dced] ~> TaskHandler[id: 1345; name: POREC:to_pairs_file (434); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7e/1aa837e5f9577f1f4bde9984f83949] ~> TaskHandler[id: 1346; name: POREC:to_pairs_file (435); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/d4c016d9e3ad36a192a5dbcc0f87d7] ~> TaskHandler[id: 1347; name: POREC:to_pairs_file (436); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/077d1ee8215372b21f6b0cb9cc8970] ~> TaskHandler[id: 1348; name: POREC:to_pairs_file (437); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ef252dbb400beb6e8f92684dbbf6b4] ~> TaskHandler[id: 1349; name: POREC:to_pairs_file (438); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/03b516f9da12b445f5d864cac4bdac] ~> TaskHandler[id: 1350; name: POREC:to_pairs_file (439); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/c1ceb5f48c181fbfdb70cbc39faa1b] ~> TaskHandler[id: 1351; name: POREC:to_pairs_file (440); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/9624df5369c163bf28f616368885dd] ~> TaskHandler[id: 1352; name: POREC:to_pairs_file (441); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/f98b4c99fe5bcc8ed14f0e5d5e123d] ~> TaskHandler[id: 1353; name: POREC:to_pairs_file (442); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d86fcd426afaf8356aa92ffa1731a4] .. remaining tasks omitted. Aug-18 10:23:41.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1343; name: POREC:to_pairs_file (432); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/de/7918c6d9abfcb21c63791a509bd758] Aug-18 10:23:41.959 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:23:41.959 [Task submitter] INFO nextflow.Session - [58/6dc7fc] Submitted process > POREC:to_pairs_file (433) Aug-18 10:23:52.123 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1344; name: POREC:to_pairs_file (433); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/6dc7fc0e530dceb5faf205dd60dced] Aug-18 10:25:14.276 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1344; name: POREC:to_pairs_file (433); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/58/6dc7fc0e530dceb5faf205dd60dced] Aug-18 10:25:14.324 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:25:14.324 [Task submitter] INFO nextflow.Session - [7e/1aa837] Submitted process > POREC:to_pairs_file (434) Aug-18 10:26:49.875 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1345; name: POREC:to_pairs_file (434); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7e/1aa837e5f9577f1f4bde9984f83949] Aug-18 10:26:49.930 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:26:49.930 [Task submitter] INFO nextflow.Session - [01/d4c016] Submitted process > POREC:to_pairs_file (435) Aug-18 10:27:28.028 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 470 -- tasks to be submitted are shown below ~> TaskHandler[id: 1347; name: POREC:to_pairs_file (436); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/077d1ee8215372b21f6b0cb9cc8970] ~> TaskHandler[id: 1348; name: POREC:to_pairs_file (437); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ef252dbb400beb6e8f92684dbbf6b4] ~> TaskHandler[id: 1349; name: POREC:to_pairs_file (438); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/03b516f9da12b445f5d864cac4bdac] ~> TaskHandler[id: 1350; name: POREC:to_pairs_file (439); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/c1ceb5f48c181fbfdb70cbc39faa1b] ~> TaskHandler[id: 1351; name: POREC:to_pairs_file (440); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/9624df5369c163bf28f616368885dd] ~> TaskHandler[id: 1352; name: POREC:to_pairs_file (441); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/f98b4c99fe5bcc8ed14f0e5d5e123d] ~> TaskHandler[id: 1353; name: POREC:to_pairs_file (442); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d86fcd426afaf8356aa92ffa1731a4] ~> TaskHandler[id: 1354; name: POREC:to_pairs_file (443); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/ecac644c7cad807306b4072e84594e] ~> TaskHandler[id: 1355; name: POREC:to_pairs_file (444); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/26a97f88ba9efac483ef9e168e608c] ~> TaskHandler[id: 1356; name: POREC:to_pairs_file (445); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/4e735fa541a0b3dbaa261df5e554a8] .. remaining tasks omitted. Aug-18 10:28:23.087 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1346; name: POREC:to_pairs_file (435); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/d4c016d9e3ad36a192a5dbcc0f87d7] Aug-18 10:28:23.133 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:28:23.133 [Task submitter] INFO nextflow.Session - [c0/077d1e] Submitted process > POREC:to_pairs_file (436) Aug-18 10:28:52.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1347; name: POREC:to_pairs_file (436); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/077d1ee8215372b21f6b0cb9cc8970] Aug-18 10:29:57.589 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1347; name: POREC:to_pairs_file (436); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c0/077d1ee8215372b21f6b0cb9cc8970] Aug-18 10:29:57.624 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:29:57.624 [Task submitter] INFO nextflow.Session - [35/ef252d] Submitted process > POREC:to_pairs_file (437) Aug-18 10:31:30.069 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1348; name: POREC:to_pairs_file (437); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/ef252dbb400beb6e8f92684dbbf6b4] Aug-18 10:31:30.100 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:31:30.100 [Task submitter] INFO nextflow.Session - [a6/03b516] Submitted process > POREC:to_pairs_file (438) Aug-18 10:32:28.197 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 467 -- tasks to be submitted are shown below ~> TaskHandler[id: 1350; name: POREC:to_pairs_file (439); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/c1ceb5f48c181fbfdb70cbc39faa1b] ~> TaskHandler[id: 1351; name: POREC:to_pairs_file (440); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/9624df5369c163bf28f616368885dd] ~> TaskHandler[id: 1352; name: POREC:to_pairs_file (441); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/f98b4c99fe5bcc8ed14f0e5d5e123d] ~> TaskHandler[id: 1353; name: POREC:to_pairs_file (442); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d86fcd426afaf8356aa92ffa1731a4] ~> TaskHandler[id: 1354; name: POREC:to_pairs_file (443); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/ecac644c7cad807306b4072e84594e] ~> TaskHandler[id: 1355; name: POREC:to_pairs_file (444); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/26a97f88ba9efac483ef9e168e608c] ~> TaskHandler[id: 1356; name: POREC:to_pairs_file (445); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/4e735fa541a0b3dbaa261df5e554a8] ~> TaskHandler[id: 1357; name: POREC:to_pairs_file (446); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a62dc8bc8d9c6de4e0638f89b1d584] ~> TaskHandler[id: 1358; name: POREC:to_pairs_file (447); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/82f6ef85b93a1f108bd7ab6b474ea0] ~> TaskHandler[id: 1359; name: POREC:to_pairs_file (448); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/68663280242526189866138b5c9dc4] .. remaining tasks omitted. Aug-18 10:33:03.838 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1349; name: POREC:to_pairs_file (438); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/03b516f9da12b445f5d864cac4bdac] Aug-18 10:33:03.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:33:03.871 [Task submitter] INFO nextflow.Session - [70/c1ceb5] Submitted process > POREC:to_pairs_file (439) Aug-18 10:33:52.224 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1350; name: POREC:to_pairs_file (439); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/c1ceb5f48c181fbfdb70cbc39faa1b] Aug-18 10:34:35.506 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1350; name: POREC:to_pairs_file (439); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/c1ceb5f48c181fbfdb70cbc39faa1b] Aug-18 10:34:35.556 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:34:35.556 [Task submitter] INFO nextflow.Session - [ea/9624df] Submitted process > POREC:to_pairs_file (440) Aug-18 10:36:08.091 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1351; name: POREC:to_pairs_file (440); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/9624df5369c163bf28f616368885dd] Aug-18 10:36:08.129 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:36:08.129 [Task submitter] INFO nextflow.Session - [88/f98b4c] Submitted process > POREC:to_pairs_file (441) Aug-18 10:37:28.279 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 464 -- tasks to be submitted are shown below ~> TaskHandler[id: 1353; name: POREC:to_pairs_file (442); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d86fcd426afaf8356aa92ffa1731a4] ~> TaskHandler[id: 1354; name: POREC:to_pairs_file (443); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/ecac644c7cad807306b4072e84594e] ~> TaskHandler[id: 1355; name: POREC:to_pairs_file (444); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/26a97f88ba9efac483ef9e168e608c] ~> TaskHandler[id: 1356; name: POREC:to_pairs_file (445); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/4e735fa541a0b3dbaa261df5e554a8] ~> TaskHandler[id: 1357; name: POREC:to_pairs_file (446); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a62dc8bc8d9c6de4e0638f89b1d584] ~> TaskHandler[id: 1358; name: POREC:to_pairs_file (447); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/82f6ef85b93a1f108bd7ab6b474ea0] ~> TaskHandler[id: 1359; name: POREC:to_pairs_file (448); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/68663280242526189866138b5c9dc4] ~> TaskHandler[id: 1360; name: POREC:to_pairs_file (449); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/591a0faa1b26224289dd8f79b751ad] ~> TaskHandler[id: 1361; name: POREC:to_pairs_file (450); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/67f970ba1747b79c51d5978ac5c8f2] ~> TaskHandler[id: 1362; name: POREC:to_pairs_file (451); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/87cd9cd8804fb30479412bca60f54a] .. remaining tasks omitted. Aug-18 10:37:40.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1352; name: POREC:to_pairs_file (441); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/f98b4c99fe5bcc8ed14f0e5d5e123d] Aug-18 10:37:40.194 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:37:40.194 [Task submitter] INFO nextflow.Session - [67/d86fcd] Submitted process > POREC:to_pairs_file (442) Aug-18 10:38:52.286 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1353; name: POREC:to_pairs_file (442); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d86fcd426afaf8356aa92ffa1731a4] Aug-18 10:39:13.045 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1353; name: POREC:to_pairs_file (442); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/d86fcd426afaf8356aa92ffa1731a4] Aug-18 10:39:13.073 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:39:13.074 [Task submitter] INFO nextflow.Session - [da/ecac64] Submitted process > POREC:to_pairs_file (443) Aug-18 10:40:45.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1354; name: POREC:to_pairs_file (443); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/ecac644c7cad807306b4072e84594e] Aug-18 10:40:45.899 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:40:45.899 [Task submitter] INFO nextflow.Session - [40/26a97f] Submitted process > POREC:to_pairs_file (444) Aug-18 10:42:20.078 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1355; name: POREC:to_pairs_file (444); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/40/26a97f88ba9efac483ef9e168e608c] Aug-18 10:42:20.109 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:42:20.109 [Task submitter] INFO nextflow.Session - [e5/4e735f] Submitted process > POREC:to_pairs_file (445) Aug-18 10:42:29.131 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 460 -- tasks to be submitted are shown below ~> TaskHandler[id: 1357; name: POREC:to_pairs_file (446); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a62dc8bc8d9c6de4e0638f89b1d584] ~> TaskHandler[id: 1358; name: POREC:to_pairs_file (447); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/82f6ef85b93a1f108bd7ab6b474ea0] ~> TaskHandler[id: 1359; name: POREC:to_pairs_file (448); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/68663280242526189866138b5c9dc4] ~> TaskHandler[id: 1360; name: POREC:to_pairs_file (449); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/591a0faa1b26224289dd8f79b751ad] ~> TaskHandler[id: 1361; name: POREC:to_pairs_file (450); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/67f970ba1747b79c51d5978ac5c8f2] ~> TaskHandler[id: 1362; name: POREC:to_pairs_file (451); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/87cd9cd8804fb30479412bca60f54a] ~> TaskHandler[id: 1363; name: POREC:to_pairs_file (452); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4d8b25024cead8198677795568f59a] ~> TaskHandler[id: 1364; name: POREC:to_pairs_file (453); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/46fbe38c5391f9311ca79ca61ad11d] ~> TaskHandler[id: 1365; name: POREC:to_pairs_file (454); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/c6733fe5de9891c5c9acd8a285002e] ~> TaskHandler[id: 1366; name: POREC:to_pairs_file (455); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/f68e9eb4f1fd5adc8d666fe3e04463] .. remaining tasks omitted. Aug-18 10:43:52.354 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1356; name: POREC:to_pairs_file (445); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/4e735fa541a0b3dbaa261df5e554a8] Aug-18 10:43:54.057 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1356; name: POREC:to_pairs_file (445); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/4e735fa541a0b3dbaa261df5e554a8] Aug-18 10:43:54.086 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:43:54.086 [Task submitter] INFO nextflow.Session - [39/a62dc8] Submitted process > POREC:to_pairs_file (446) Aug-18 10:45:27.146 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1357; name: POREC:to_pairs_file (446); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/a62dc8bc8d9c6de4e0638f89b1d584] Aug-18 10:45:27.184 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:45:27.184 [Task submitter] INFO nextflow.Session - [59/82f6ef] Submitted process > POREC:to_pairs_file (447) Aug-18 10:47:01.008 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1358; name: POREC:to_pairs_file (447); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/82f6ef85b93a1f108bd7ab6b474ea0] Aug-18 10:47:01.043 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:47:01.043 [Task submitter] INFO nextflow.Session - [71/686632] Submitted process > POREC:to_pairs_file (448) Aug-18 10:47:30.097 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 457 -- tasks to be submitted are shown below ~> TaskHandler[id: 1360; name: POREC:to_pairs_file (449); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/591a0faa1b26224289dd8f79b751ad] ~> TaskHandler[id: 1361; name: POREC:to_pairs_file (450); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/67f970ba1747b79c51d5978ac5c8f2] ~> TaskHandler[id: 1362; name: POREC:to_pairs_file (451); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/87cd9cd8804fb30479412bca60f54a] ~> TaskHandler[id: 1363; name: POREC:to_pairs_file (452); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4d8b25024cead8198677795568f59a] ~> TaskHandler[id: 1364; name: POREC:to_pairs_file (453); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/46fbe38c5391f9311ca79ca61ad11d] ~> TaskHandler[id: 1365; name: POREC:to_pairs_file (454); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/c6733fe5de9891c5c9acd8a285002e] ~> TaskHandler[id: 1366; name: POREC:to_pairs_file (455); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/f68e9eb4f1fd5adc8d666fe3e04463] ~> TaskHandler[id: 1367; name: POREC:to_pairs_file (456); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/92cd5a69853a5900b850852fc9849c] ~> TaskHandler[id: 1368; name: POREC:to_pairs_file (457); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/9799707383d9b56f5245445b3637b6] ~> TaskHandler[id: 1369; name: POREC:to_pairs_file (458); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/859a871adca4f72df86d0242645d0b] .. remaining tasks omitted. Aug-18 10:48:34.727 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1359; name: POREC:to_pairs_file (448); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/71/68663280242526189866138b5c9dc4] Aug-18 10:48:34.731 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:48:34.731 [Task submitter] INFO nextflow.Session - [6b/591a0f] Submitted process > POREC:to_pairs_file (449) Aug-18 10:48:52.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1360; name: POREC:to_pairs_file (449); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/591a0faa1b26224289dd8f79b751ad] Aug-18 10:50:06.812 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1360; name: POREC:to_pairs_file (449); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/591a0faa1b26224289dd8f79b751ad] Aug-18 10:50:06.816 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:50:06.816 [Task submitter] INFO nextflow.Session - [93/67f970] Submitted process > POREC:to_pairs_file (450) Aug-18 10:51:39.330 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1361; name: POREC:to_pairs_file (450); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/93/67f970ba1747b79c51d5978ac5c8f2] Aug-18 10:51:39.362 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:51:39.362 [Task submitter] INFO nextflow.Session - [39/87cd9c] Submitted process > POREC:to_pairs_file (451) Aug-18 10:52:30.445 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 454 -- tasks to be submitted are shown below ~> TaskHandler[id: 1363; name: POREC:to_pairs_file (452); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4d8b25024cead8198677795568f59a] ~> TaskHandler[id: 1364; name: POREC:to_pairs_file (453); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/46fbe38c5391f9311ca79ca61ad11d] ~> TaskHandler[id: 1365; name: POREC:to_pairs_file (454); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/c6733fe5de9891c5c9acd8a285002e] ~> TaskHandler[id: 1366; name: POREC:to_pairs_file (455); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/f68e9eb4f1fd5adc8d666fe3e04463] ~> TaskHandler[id: 1367; name: POREC:to_pairs_file (456); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/92cd5a69853a5900b850852fc9849c] ~> TaskHandler[id: 1368; name: POREC:to_pairs_file (457); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/9799707383d9b56f5245445b3637b6] ~> TaskHandler[id: 1369; name: POREC:to_pairs_file (458); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/859a871adca4f72df86d0242645d0b] ~> TaskHandler[id: 1370; name: POREC:to_pairs_file (459); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/d9b9ac7b768d15a0bf27f2106cd495] ~> TaskHandler[id: 1371; name: POREC:to_pairs_file (460); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/0b26a7b591897b14c3ca47579c426f] ~> TaskHandler[id: 1372; name: POREC:to_pairs_file (461); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/7ebf44229abc34387a604130b2b064] .. remaining tasks omitted. Aug-18 10:53:13.176 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1362; name: POREC:to_pairs_file (451); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/87cd9cd8804fb30479412bca60f54a] Aug-18 10:53:13.252 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:53:13.252 [Task submitter] INFO nextflow.Session - [63/4d8b25] Submitted process > POREC:to_pairs_file (452) Aug-18 10:53:52.429 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1363; name: POREC:to_pairs_file (452); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4d8b25024cead8198677795568f59a] Aug-18 10:54:46.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1363; name: POREC:to_pairs_file (452); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/4d8b25024cead8198677795568f59a] Aug-18 10:54:46.765 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:54:46.765 [Task submitter] INFO nextflow.Session - [96/46fbe3] Submitted process > POREC:to_pairs_file (453) Aug-18 10:56:20.934 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1364; name: POREC:to_pairs_file (453); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/46fbe38c5391f9311ca79ca61ad11d] Aug-18 10:56:20.939 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:56:20.939 [Task submitter] INFO nextflow.Session - [05/c6733f] Submitted process > POREC:to_pairs_file (454) Aug-18 10:57:31.055 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 451 -- tasks to be submitted are shown below ~> TaskHandler[id: 1366; name: POREC:to_pairs_file (455); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/f68e9eb4f1fd5adc8d666fe3e04463] ~> TaskHandler[id: 1367; name: POREC:to_pairs_file (456); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/92cd5a69853a5900b850852fc9849c] ~> TaskHandler[id: 1368; name: POREC:to_pairs_file (457); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/9799707383d9b56f5245445b3637b6] ~> TaskHandler[id: 1369; name: POREC:to_pairs_file (458); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/859a871adca4f72df86d0242645d0b] ~> TaskHandler[id: 1370; name: POREC:to_pairs_file (459); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/d9b9ac7b768d15a0bf27f2106cd495] ~> TaskHandler[id: 1371; name: POREC:to_pairs_file (460); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/0b26a7b591897b14c3ca47579c426f] ~> TaskHandler[id: 1372; name: POREC:to_pairs_file (461); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/7ebf44229abc34387a604130b2b064] ~> TaskHandler[id: 1373; name: POREC:to_pairs_file (462); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/1e77cf3b433c6b1c084005154e7f83] ~> TaskHandler[id: 1374; name: POREC:to_pairs_file (463); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/9fbedc2d788238104c631a76411710] ~> TaskHandler[id: 1375; name: POREC:to_pairs_file (464); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/48cc08de557251bd2ae954cca85bda] .. remaining tasks omitted. Aug-18 10:57:53.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1365; name: POREC:to_pairs_file (454); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/05/c6733fe5de9891c5c9acd8a285002e] Aug-18 10:57:53.925 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:57:53.925 [Task submitter] INFO nextflow.Session - [4b/f68e9e] Submitted process > POREC:to_pairs_file (455) Aug-18 10:58:52.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1366; name: POREC:to_pairs_file (455); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/f68e9eb4f1fd5adc8d666fe3e04463] Aug-18 10:59:27.612 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1366; name: POREC:to_pairs_file (455); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/f68e9eb4f1fd5adc8d666fe3e04463] Aug-18 10:59:27.652 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 10:59:27.652 [Task submitter] INFO nextflow.Session - [3b/92cd5a] Submitted process > POREC:to_pairs_file (456) Aug-18 11:01:04.449 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1367; name: POREC:to_pairs_file (456); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/92cd5a69853a5900b850852fc9849c] Aug-18 11:01:04.501 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:01:04.501 [Task submitter] INFO nextflow.Session - [0c/979970] Submitted process > POREC:to_pairs_file (457) Aug-18 11:02:31.641 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 448 -- tasks to be submitted are shown below ~> TaskHandler[id: 1369; name: POREC:to_pairs_file (458); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/859a871adca4f72df86d0242645d0b] ~> TaskHandler[id: 1370; name: POREC:to_pairs_file (459); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/d9b9ac7b768d15a0bf27f2106cd495] ~> TaskHandler[id: 1371; name: POREC:to_pairs_file (460); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/0b26a7b591897b14c3ca47579c426f] ~> TaskHandler[id: 1372; name: POREC:to_pairs_file (461); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/7ebf44229abc34387a604130b2b064] ~> TaskHandler[id: 1373; name: POREC:to_pairs_file (462); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/1e77cf3b433c6b1c084005154e7f83] ~> TaskHandler[id: 1374; name: POREC:to_pairs_file (463); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/9fbedc2d788238104c631a76411710] ~> TaskHandler[id: 1375; name: POREC:to_pairs_file (464); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/48cc08de557251bd2ae954cca85bda] ~> TaskHandler[id: 1376; name: POREC:to_pairs_file (465); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/68cf81aea144577653660533f480f4] ~> TaskHandler[id: 1377; name: POREC:to_pairs_file (466); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/12978f4725ee350afc381280757717] ~> TaskHandler[id: 1378; name: POREC:to_pairs_file (467); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/0b063021d6384111c400fee77396fc] .. remaining tasks omitted. Aug-18 11:02:38.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1368; name: POREC:to_pairs_file (457); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0c/9799707383d9b56f5245445b3637b6] Aug-18 11:02:38.599 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:02:38.599 [Task submitter] INFO nextflow.Session - [f1/859a87] Submitted process > POREC:to_pairs_file (458) Aug-18 11:03:52.621 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1369; name: POREC:to_pairs_file (458); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/859a871adca4f72df86d0242645d0b] Aug-18 11:04:13.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1369; name: POREC:to_pairs_file (458); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/859a871adca4f72df86d0242645d0b] Aug-18 11:04:13.442 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:04:13.442 [Task submitter] INFO nextflow.Session - [6a/d9b9ac] Submitted process > POREC:to_pairs_file (459) Aug-18 11:05:47.991 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1370; name: POREC:to_pairs_file (459); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/d9b9ac7b768d15a0bf27f2106cd495] Aug-18 11:05:48.030 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:05:48.030 [Task submitter] INFO nextflow.Session - [ae/0b26a7] Submitted process > POREC:to_pairs_file (460) Aug-18 11:07:23.055 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1371; name: POREC:to_pairs_file (460); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/0b26a7b591897b14c3ca47579c426f] Aug-18 11:07:23.094 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:07:23.094 [Task submitter] INFO nextflow.Session - [64/7ebf44] Submitted process > POREC:to_pairs_file (461) Aug-18 11:07:32.116 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 444 -- tasks to be submitted are shown below ~> TaskHandler[id: 1373; name: POREC:to_pairs_file (462); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/1e77cf3b433c6b1c084005154e7f83] ~> TaskHandler[id: 1374; name: POREC:to_pairs_file (463); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/9fbedc2d788238104c631a76411710] ~> TaskHandler[id: 1375; name: POREC:to_pairs_file (464); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/48cc08de557251bd2ae954cca85bda] ~> TaskHandler[id: 1376; name: POREC:to_pairs_file (465); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/68cf81aea144577653660533f480f4] ~> TaskHandler[id: 1377; name: POREC:to_pairs_file (466); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/12978f4725ee350afc381280757717] ~> TaskHandler[id: 1378; name: POREC:to_pairs_file (467); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/0b063021d6384111c400fee77396fc] ~> TaskHandler[id: 1379; name: POREC:to_pairs_file (468); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/210d2d65da81138d22a28a6f10eca8] ~> TaskHandler[id: 1380; name: POREC:to_pairs_file (469); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ca399f98450c4ce6304cc0b5718505] ~> TaskHandler[id: 1381; name: POREC:to_pairs_file (470); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/edf757586ba675090adcc5ca6789a9] ~> TaskHandler[id: 1382; name: POREC:to_pairs_file (471); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a9e3ee6b3d18efe69b09c37c5df7fb] .. remaining tasks omitted. Aug-18 11:08:52.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1372; name: POREC:to_pairs_file (461); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/7ebf44229abc34387a604130b2b064] Aug-18 11:08:56.338 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1372; name: POREC:to_pairs_file (461); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/7ebf44229abc34387a604130b2b064] Aug-18 11:08:56.370 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:08:56.370 [Task submitter] INFO nextflow.Session - [0a/1e77cf] Submitted process > POREC:to_pairs_file (462) Aug-18 11:10:28.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1373; name: POREC:to_pairs_file (462); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0a/1e77cf3b433c6b1c084005154e7f83] Aug-18 11:10:28.566 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:10:28.566 [Task submitter] INFO nextflow.Session - [21/9fbedc] Submitted process > POREC:to_pairs_file (463) Aug-18 11:12:03.032 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1374; name: POREC:to_pairs_file (463); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/9fbedc2d788238104c631a76411710] Aug-18 11:12:03.037 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:12:03.037 [Task submitter] INFO nextflow.Session - [7f/48cc08] Submitted process > POREC:to_pairs_file (464) Aug-18 11:12:33.093 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 441 -- tasks to be submitted are shown below ~> TaskHandler[id: 1376; name: POREC:to_pairs_file (465); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/68cf81aea144577653660533f480f4] ~> TaskHandler[id: 1377; name: POREC:to_pairs_file (466); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/12978f4725ee350afc381280757717] ~> TaskHandler[id: 1378; name: POREC:to_pairs_file (467); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/0b063021d6384111c400fee77396fc] ~> TaskHandler[id: 1379; name: POREC:to_pairs_file (468); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/210d2d65da81138d22a28a6f10eca8] ~> TaskHandler[id: 1380; name: POREC:to_pairs_file (469); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ca399f98450c4ce6304cc0b5718505] ~> TaskHandler[id: 1381; name: POREC:to_pairs_file (470); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/edf757586ba675090adcc5ca6789a9] ~> TaskHandler[id: 1382; name: POREC:to_pairs_file (471); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a9e3ee6b3d18efe69b09c37c5df7fb] ~> TaskHandler[id: 1383; name: POREC:to_pairs_file (472); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/4ddb78681b5ee79fc4e5835f68bcba] ~> TaskHandler[id: 1384; name: POREC:to_pairs_file (473); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/54045df7106713069a2bce594190af] ~> TaskHandler[id: 1385; name: POREC:to_pairs_file (474); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/8a6778a3dadc3337cf5dcf0c425dd8] .. remaining tasks omitted. Aug-18 11:13:38.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1375; name: POREC:to_pairs_file (464); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/48cc08de557251bd2ae954cca85bda] Aug-18 11:13:38.775 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:13:38.775 [Task submitter] INFO nextflow.Session - [88/68cf81] Submitted process > POREC:to_pairs_file (465) Aug-18 11:13:52.677 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1376; name: POREC:to_pairs_file (465); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/68cf81aea144577653660533f480f4] Aug-18 11:15:13.860 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1376; name: POREC:to_pairs_file (465); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/68cf81aea144577653660533f480f4] Aug-18 11:15:13.901 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:15:13.901 [Task submitter] INFO nextflow.Session - [28/12978f] Submitted process > POREC:to_pairs_file (466) Aug-18 11:16:47.655 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1377; name: POREC:to_pairs_file (466); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/12978f4725ee350afc381280757717] Aug-18 11:16:47.681 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:16:47.681 [Task submitter] INFO nextflow.Session - [97/0b0630] Submitted process > POREC:to_pairs_file (467) Aug-18 11:17:33.771 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 438 -- tasks to be submitted are shown below ~> TaskHandler[id: 1379; name: POREC:to_pairs_file (468); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/210d2d65da81138d22a28a6f10eca8] ~> TaskHandler[id: 1380; name: POREC:to_pairs_file (469); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ca399f98450c4ce6304cc0b5718505] ~> TaskHandler[id: 1381; name: POREC:to_pairs_file (470); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/edf757586ba675090adcc5ca6789a9] ~> TaskHandler[id: 1382; name: POREC:to_pairs_file (471); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a9e3ee6b3d18efe69b09c37c5df7fb] ~> TaskHandler[id: 1383; name: POREC:to_pairs_file (472); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/4ddb78681b5ee79fc4e5835f68bcba] ~> TaskHandler[id: 1384; name: POREC:to_pairs_file (473); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/54045df7106713069a2bce594190af] ~> TaskHandler[id: 1385; name: POREC:to_pairs_file (474); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/8a6778a3dadc3337cf5dcf0c425dd8] ~> TaskHandler[id: 1386; name: POREC:to_pairs_file (475); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ef256af26827e3d6addc5912f4d25e] ~> TaskHandler[id: 1387; name: POREC:to_pairs_file (476); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/6e13d3558efdce1c7cc204bbe012e7] ~> TaskHandler[id: 1388; name: POREC:to_pairs_file (477); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/acfdf778604f1d0de1767e683a2406] .. remaining tasks omitted. Aug-18 11:18:21.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1378; name: POREC:to_pairs_file (467); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/0b063021d6384111c400fee77396fc] Aug-18 11:18:21.526 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:18:21.526 [Task submitter] INFO nextflow.Session - [10/210d2d] Submitted process > POREC:to_pairs_file (468) Aug-18 11:18:52.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1379; name: POREC:to_pairs_file (468); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/210d2d65da81138d22a28a6f10eca8] Aug-18 11:19:57.126 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1379; name: POREC:to_pairs_file (468); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/210d2d65da81138d22a28a6f10eca8] Aug-18 11:19:57.157 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:19:57.157 [Task submitter] INFO nextflow.Session - [d6/ca399f] Submitted process > POREC:to_pairs_file (469) Aug-18 11:21:32.367 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1380; name: POREC:to_pairs_file (469); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/ca399f98450c4ce6304cc0b5718505] Aug-18 11:21:32.387 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:21:32.388 [Task submitter] INFO nextflow.Session - [c8/edf757] Submitted process > POREC:to_pairs_file (470) Aug-18 11:22:34.485 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 435 -- tasks to be submitted are shown below ~> TaskHandler[id: 1382; name: POREC:to_pairs_file (471); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a9e3ee6b3d18efe69b09c37c5df7fb] ~> TaskHandler[id: 1383; name: POREC:to_pairs_file (472); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/4ddb78681b5ee79fc4e5835f68bcba] ~> TaskHandler[id: 1384; name: POREC:to_pairs_file (473); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/54045df7106713069a2bce594190af] ~> TaskHandler[id: 1385; name: POREC:to_pairs_file (474); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/8a6778a3dadc3337cf5dcf0c425dd8] ~> TaskHandler[id: 1386; name: POREC:to_pairs_file (475); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ef256af26827e3d6addc5912f4d25e] ~> TaskHandler[id: 1387; name: POREC:to_pairs_file (476); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/6e13d3558efdce1c7cc204bbe012e7] ~> TaskHandler[id: 1388; name: POREC:to_pairs_file (477); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/acfdf778604f1d0de1767e683a2406] ~> TaskHandler[id: 1389; name: POREC:to_pairs_file (478); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/2d903ae6464c98b882d3e6c65c2243] ~> TaskHandler[id: 1390; name: POREC:to_pairs_file (479); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/a5b0ad2a8574e5de09ca87765e5ca5] ~> TaskHandler[id: 1391; name: POREC:to_pairs_file (480); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/4ca308de7ead23d763aaeebc934a51] .. remaining tasks omitted. Aug-18 11:23:06.088 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1381; name: POREC:to_pairs_file (470); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/edf757586ba675090adcc5ca6789a9] Aug-18 11:23:06.093 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:23:06.093 [Task submitter] INFO nextflow.Session - [ea/a9e3ee] Submitted process > POREC:to_pairs_file (471) Aug-18 11:23:52.812 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1382; name: POREC:to_pairs_file (471); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a9e3ee6b3d18efe69b09c37c5df7fb] Aug-18 11:24:39.019 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1382; name: POREC:to_pairs_file (471); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a9e3ee6b3d18efe69b09c37c5df7fb] Aug-18 11:24:39.050 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:24:39.050 [Task submitter] INFO nextflow.Session - [6a/4ddb78] Submitted process > POREC:to_pairs_file (472) Aug-18 11:26:13.598 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1383; name: POREC:to_pairs_file (472); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/4ddb78681b5ee79fc4e5835f68bcba] Aug-18 11:26:13.621 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:26:13.621 [Task submitter] INFO nextflow.Session - [47/54045d] Submitted process > POREC:to_pairs_file (473) Aug-18 11:27:34.764 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 432 -- tasks to be submitted are shown below ~> TaskHandler[id: 1385; name: POREC:to_pairs_file (474); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/8a6778a3dadc3337cf5dcf0c425dd8] ~> TaskHandler[id: 1386; name: POREC:to_pairs_file (475); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ef256af26827e3d6addc5912f4d25e] ~> TaskHandler[id: 1387; name: POREC:to_pairs_file (476); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/6e13d3558efdce1c7cc204bbe012e7] ~> TaskHandler[id: 1388; name: POREC:to_pairs_file (477); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/acfdf778604f1d0de1767e683a2406] ~> TaskHandler[id: 1389; name: POREC:to_pairs_file (478); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/2d903ae6464c98b882d3e6c65c2243] ~> TaskHandler[id: 1390; name: POREC:to_pairs_file (479); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/a5b0ad2a8574e5de09ca87765e5ca5] ~> TaskHandler[id: 1391; name: POREC:to_pairs_file (480); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/4ca308de7ead23d763aaeebc934a51] ~> TaskHandler[id: 1392; name: POREC:to_pairs_file (481); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/f4bce7640e1f04b0ddec081bc0110d] ~> TaskHandler[id: 1393; name: POREC:to_pairs_file (482); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/ceb98e061e5d0f2b74a9454e979951] ~> TaskHandler[id: 1394; name: POREC:to_pairs_file (483); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/164ea8639ba1bfa5803a0c3ec9a490] .. remaining tasks omitted. Aug-18 11:27:47.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1384; name: POREC:to_pairs_file (473); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/54045df7106713069a2bce594190af] Aug-18 11:27:47.046 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:27:47.046 [Task submitter] INFO nextflow.Session - [39/8a6778] Submitted process > POREC:to_pairs_file (474) Aug-18 11:28:52.861 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1385; name: POREC:to_pairs_file (474); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/8a6778a3dadc3337cf5dcf0c425dd8] Aug-18 11:29:20.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1385; name: POREC:to_pairs_file (474); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/8a6778a3dadc3337cf5dcf0c425dd8] Aug-18 11:29:20.857 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:29:20.858 [Task submitter] INFO nextflow.Session - [39/ef256a] Submitted process > POREC:to_pairs_file (475) Aug-18 11:30:54.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1386; name: POREC:to_pairs_file (475); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/39/ef256af26827e3d6addc5912f4d25e] Aug-18 11:30:54.664 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:30:54.664 [Task submitter] INFO nextflow.Session - [3b/6e13d3] Submitted process > POREC:to_pairs_file (476) Aug-18 11:32:29.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1387; name: POREC:to_pairs_file (476); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/6e13d3558efdce1c7cc204bbe012e7] Aug-18 11:32:29.749 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:32:29.749 [Task submitter] INFO nextflow.Session - [8a/acfdf7] Submitted process > POREC:to_pairs_file (477) Aug-18 11:32:34.784 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 428 -- tasks to be submitted are shown below ~> TaskHandler[id: 1389; name: POREC:to_pairs_file (478); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/2d903ae6464c98b882d3e6c65c2243] ~> TaskHandler[id: 1390; name: POREC:to_pairs_file (479); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/a5b0ad2a8574e5de09ca87765e5ca5] ~> TaskHandler[id: 1391; name: POREC:to_pairs_file (480); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/4ca308de7ead23d763aaeebc934a51] ~> TaskHandler[id: 1392; name: POREC:to_pairs_file (481); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/f4bce7640e1f04b0ddec081bc0110d] ~> TaskHandler[id: 1393; name: POREC:to_pairs_file (482); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/ceb98e061e5d0f2b74a9454e979951] ~> TaskHandler[id: 1394; name: POREC:to_pairs_file (483); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/164ea8639ba1bfa5803a0c3ec9a490] ~> TaskHandler[id: 1395; name: POREC:to_pairs_file (484); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7c123778d4e8841b53a2b90f3e95e6] ~> TaskHandler[id: 1396; name: POREC:to_pairs_file (485); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/a6c2d70004594de68d3bdd0d96ac10] ~> TaskHandler[id: 1397; name: POREC:to_pairs_file (486); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/2da3ce31be9a638490e5d06514021c] ~> TaskHandler[id: 1398; name: POREC:to_pairs_file (487); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/05dde34baccbeb7fdf17214faa1c75] .. remaining tasks omitted. Aug-18 11:33:52.874 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1388; name: POREC:to_pairs_file (477); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/acfdf778604f1d0de1767e683a2406] Aug-18 11:34:04.813 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1388; name: POREC:to_pairs_file (477); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/acfdf778604f1d0de1767e683a2406] Aug-18 11:34:04.848 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:34:04.848 [Task submitter] INFO nextflow.Session - [ce/2d903a] Submitted process > POREC:to_pairs_file (478) Aug-18 11:35:38.908 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1389; name: POREC:to_pairs_file (478); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/2d903ae6464c98b882d3e6c65c2243] Aug-18 11:35:38.963 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:35:38.963 [Task submitter] INFO nextflow.Session - [a2/a5b0ad] Submitted process > POREC:to_pairs_file (479) Aug-18 11:37:15.133 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1390; name: POREC:to_pairs_file (479); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a2/a5b0ad2a8574e5de09ca87765e5ca5] Aug-18 11:37:15.137 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:37:15.137 [Task submitter] INFO nextflow.Session - [21/4ca308] Submitted process > POREC:to_pairs_file (480) Aug-18 11:37:35.168 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 425 -- tasks to be submitted are shown below ~> TaskHandler[id: 1392; name: POREC:to_pairs_file (481); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/f4bce7640e1f04b0ddec081bc0110d] ~> TaskHandler[id: 1393; name: POREC:to_pairs_file (482); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/ceb98e061e5d0f2b74a9454e979951] ~> TaskHandler[id: 1394; name: POREC:to_pairs_file (483); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/164ea8639ba1bfa5803a0c3ec9a490] ~> TaskHandler[id: 1395; name: POREC:to_pairs_file (484); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7c123778d4e8841b53a2b90f3e95e6] ~> TaskHandler[id: 1396; name: POREC:to_pairs_file (485); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/a6c2d70004594de68d3bdd0d96ac10] ~> TaskHandler[id: 1397; name: POREC:to_pairs_file (486); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/2da3ce31be9a638490e5d06514021c] ~> TaskHandler[id: 1398; name: POREC:to_pairs_file (487); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/05dde34baccbeb7fdf17214faa1c75] ~> TaskHandler[id: 1399; name: POREC:to_pairs_file (488); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/01bcc0f6d88cb160eb59ac7498eec7] ~> TaskHandler[id: 1400; name: POREC:to_pairs_file (489); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/9ba5bc402b2db0f6fd6b88e9d5efc9] ~> TaskHandler[id: 1401; name: POREC:to_pairs_file (490); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/369d1acc41c563c08645d8cfb73d34] .. remaining tasks omitted. Aug-18 11:38:48.200 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1391; name: POREC:to_pairs_file (480); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/4ca308de7ead23d763aaeebc934a51] Aug-18 11:38:48.249 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:38:48.249 [Task submitter] INFO nextflow.Session - [31/f4bce7] Submitted process > POREC:to_pairs_file (481) Aug-18 11:38:52.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1392; name: POREC:to_pairs_file (481); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/f4bce7640e1f04b0ddec081bc0110d] Aug-18 11:40:22.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1392; name: POREC:to_pairs_file (481); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/f4bce7640e1f04b0ddec081bc0110d] Aug-18 11:40:22.832 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:40:22.832 [Task submitter] INFO nextflow.Session - [df/ceb98e] Submitted process > POREC:to_pairs_file (482) Aug-18 11:41:56.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1393; name: POREC:to_pairs_file (482); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/ceb98e061e5d0f2b74a9454e979951] Aug-18 11:41:56.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:41:56.579 [Task submitter] INFO nextflow.Session - [25/164ea8] Submitted process > POREC:to_pairs_file (483) Aug-18 11:42:35.721 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 422 -- tasks to be submitted are shown below ~> TaskHandler[id: 1395; name: POREC:to_pairs_file (484); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7c123778d4e8841b53a2b90f3e95e6] ~> TaskHandler[id: 1396; name: POREC:to_pairs_file (485); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/a6c2d70004594de68d3bdd0d96ac10] ~> TaskHandler[id: 1397; name: POREC:to_pairs_file (486); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/2da3ce31be9a638490e5d06514021c] ~> TaskHandler[id: 1398; name: POREC:to_pairs_file (487); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/05dde34baccbeb7fdf17214faa1c75] ~> TaskHandler[id: 1399; name: POREC:to_pairs_file (488); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/01bcc0f6d88cb160eb59ac7498eec7] ~> TaskHandler[id: 1400; name: POREC:to_pairs_file (489); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/9ba5bc402b2db0f6fd6b88e9d5efc9] ~> TaskHandler[id: 1401; name: POREC:to_pairs_file (490); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/369d1acc41c563c08645d8cfb73d34] ~> TaskHandler[id: 1402; name: POREC:to_pairs_file (491); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/584bc905cf39d6ef36d5a4a6404723] ~> TaskHandler[id: 1403; name: POREC:to_pairs_file (492); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/5eec832d69b5a7c61bc499fe930e0d] ~> TaskHandler[id: 1404; name: POREC:to_pairs_file (493); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/3cd0eb25604500b3eb4526abb14ef4] .. remaining tasks omitted. Aug-18 11:43:30.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1394; name: POREC:to_pairs_file (483); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/164ea8639ba1bfa5803a0c3ec9a490] Aug-18 11:43:30.356 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:43:30.356 [Task submitter] INFO nextflow.Session - [b3/7c1237] Submitted process > POREC:to_pairs_file (484) Aug-18 11:43:52.947 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1395; name: POREC:to_pairs_file (484); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7c123778d4e8841b53a2b90f3e95e6] Aug-18 11:45:03.798 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1395; name: POREC:to_pairs_file (484); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7c123778d4e8841b53a2b90f3e95e6] Aug-18 11:45:03.804 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:45:03.804 [Task submitter] INFO nextflow.Session - [6c/a6c2d7] Submitted process > POREC:to_pairs_file (485) Aug-18 11:46:38.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1396; name: POREC:to_pairs_file (485); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/a6c2d70004594de68d3bdd0d96ac10] Aug-18 11:46:38.113 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:46:38.113 [Task submitter] INFO nextflow.Session - [04/2da3ce] Submitted process > POREC:to_pairs_file (486) Aug-18 11:47:36.192 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 419 -- tasks to be submitted are shown below ~> TaskHandler[id: 1398; name: POREC:to_pairs_file (487); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/05dde34baccbeb7fdf17214faa1c75] ~> TaskHandler[id: 1399; name: POREC:to_pairs_file (488); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/01bcc0f6d88cb160eb59ac7498eec7] ~> TaskHandler[id: 1400; name: POREC:to_pairs_file (489); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/9ba5bc402b2db0f6fd6b88e9d5efc9] ~> TaskHandler[id: 1401; name: POREC:to_pairs_file (490); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/369d1acc41c563c08645d8cfb73d34] ~> TaskHandler[id: 1402; name: POREC:to_pairs_file (491); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/584bc905cf39d6ef36d5a4a6404723] ~> TaskHandler[id: 1403; name: POREC:to_pairs_file (492); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/5eec832d69b5a7c61bc499fe930e0d] ~> TaskHandler[id: 1404; name: POREC:to_pairs_file (493); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/3cd0eb25604500b3eb4526abb14ef4] ~> TaskHandler[id: 1405; name: POREC:to_pairs_file (494); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/5f628369a6f9db52a7a850bd7d6467] ~> TaskHandler[id: 1406; name: POREC:to_pairs_file (495); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/64734ce43230987181e7a1eb214947] ~> TaskHandler[id: 1407; name: POREC:to_pairs_file (496); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/c89535794f0cbe1627770e178199d2] .. remaining tasks omitted. Aug-18 11:48:12.815 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1397; name: POREC:to_pairs_file (486); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/2da3ce31be9a638490e5d06514021c] Aug-18 11:48:12.836 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:48:12.836 [Task submitter] INFO nextflow.Session - [81/05dde3] Submitted process > POREC:to_pairs_file (487) Aug-18 11:48:52.950 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1398; name: POREC:to_pairs_file (487); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/05dde34baccbeb7fdf17214faa1c75] Aug-18 11:49:46.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1398; name: POREC:to_pairs_file (487); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/05dde34baccbeb7fdf17214faa1c75] Aug-18 11:49:46.485 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:49:46.495 [Task submitter] INFO nextflow.Session - [8a/01bcc0] Submitted process > POREC:to_pairs_file (488) Aug-18 11:51:22.066 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1399; name: POREC:to_pairs_file (488); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8a/01bcc0f6d88cb160eb59ac7498eec7] Aug-18 11:51:22.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:51:22.071 [Task submitter] INFO nextflow.Session - [cf/9ba5bc] Submitted process > POREC:to_pairs_file (489) Aug-18 11:52:37.169 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 416 -- tasks to be submitted are shown below ~> TaskHandler[id: 1401; name: POREC:to_pairs_file (490); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/369d1acc41c563c08645d8cfb73d34] ~> TaskHandler[id: 1402; name: POREC:to_pairs_file (491); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/584bc905cf39d6ef36d5a4a6404723] ~> TaskHandler[id: 1403; name: POREC:to_pairs_file (492); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/5eec832d69b5a7c61bc499fe930e0d] ~> TaskHandler[id: 1404; name: POREC:to_pairs_file (493); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/3cd0eb25604500b3eb4526abb14ef4] ~> TaskHandler[id: 1405; name: POREC:to_pairs_file (494); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/5f628369a6f9db52a7a850bd7d6467] ~> TaskHandler[id: 1406; name: POREC:to_pairs_file (495); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/64734ce43230987181e7a1eb214947] ~> TaskHandler[id: 1407; name: POREC:to_pairs_file (496); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/c89535794f0cbe1627770e178199d2] ~> TaskHandler[id: 1408; name: POREC:to_pairs_file (497); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/ad40b703e4487dcb981631ec8ed17f] ~> TaskHandler[id: 1409; name: POREC:to_pairs_file (498); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/43d80b9086fb53ae8aa82e61af9d04] ~> TaskHandler[id: 1410; name: POREC:to_pairs_file (499); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/8ca6d873da81da75e0de2db46e588c] .. remaining tasks omitted. Aug-18 11:52:56.405 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1400; name: POREC:to_pairs_file (489); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/9ba5bc402b2db0f6fd6b88e9d5efc9] Aug-18 11:52:56.423 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:52:56.423 [Task submitter] INFO nextflow.Session - [56/369d1a] Submitted process > POREC:to_pairs_file (490) Aug-18 11:53:53.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1401; name: POREC:to_pairs_file (490); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/369d1acc41c563c08645d8cfb73d34] Aug-18 11:54:32.172 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1401; name: POREC:to_pairs_file (490); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/369d1acc41c563c08645d8cfb73d34] Aug-18 11:54:32.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:54:32.222 [Task submitter] INFO nextflow.Session - [e9/584bc9] Submitted process > POREC:to_pairs_file (491) Aug-18 11:56:09.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1402; name: POREC:to_pairs_file (491); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/584bc905cf39d6ef36d5a4a6404723] Aug-18 11:56:09.540 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:56:09.540 [Task submitter] INFO nextflow.Session - [ba/5eec83] Submitted process > POREC:to_pairs_file (492) Aug-18 11:57:37.720 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 413 -- tasks to be submitted are shown below ~> TaskHandler[id: 1404; name: POREC:to_pairs_file (493); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/3cd0eb25604500b3eb4526abb14ef4] ~> TaskHandler[id: 1405; name: POREC:to_pairs_file (494); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/5f628369a6f9db52a7a850bd7d6467] ~> TaskHandler[id: 1406; name: POREC:to_pairs_file (495); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/64734ce43230987181e7a1eb214947] ~> TaskHandler[id: 1407; name: POREC:to_pairs_file (496); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/c89535794f0cbe1627770e178199d2] ~> TaskHandler[id: 1408; name: POREC:to_pairs_file (497); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/ad40b703e4487dcb981631ec8ed17f] ~> TaskHandler[id: 1409; name: POREC:to_pairs_file (498); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/43d80b9086fb53ae8aa82e61af9d04] ~> TaskHandler[id: 1410; name: POREC:to_pairs_file (499); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/8ca6d873da81da75e0de2db46e588c] ~> TaskHandler[id: 1411; name: POREC:to_pairs_file (500); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/2f45d1579996d28c1c73fe582b8ce1] ~> TaskHandler[id: 1412; name: POREC:to_pairs_file (501); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/dddaa72cb3c04d8a89740bd08a9b72] ~> TaskHandler[id: 1413; name: POREC:to_pairs_file (502); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/df7188b2e49914bb5e2aba861e66bd] .. remaining tasks omitted. Aug-18 11:57:44.182 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1403; name: POREC:to_pairs_file (492); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ba/5eec832d69b5a7c61bc499fe930e0d] Aug-18 11:57:44.235 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:57:44.235 [Task submitter] INFO nextflow.Session - [0d/3cd0eb] Submitted process > POREC:to_pairs_file (493) Aug-18 11:58:53.098 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1404; name: POREC:to_pairs_file (493); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/3cd0eb25604500b3eb4526abb14ef4] Aug-18 11:59:18.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1404; name: POREC:to_pairs_file (493); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/3cd0eb25604500b3eb4526abb14ef4] Aug-18 11:59:18.208 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 11:59:18.208 [Task submitter] INFO nextflow.Session - [60/5f6283] Submitted process > POREC:to_pairs_file (494) Aug-18 12:00:54.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1405; name: POREC:to_pairs_file (494); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/5f628369a6f9db52a7a850bd7d6467] Aug-18 12:00:54.408 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:00:54.409 [Task submitter] INFO nextflow.Session - [d2/64734c] Submitted process > POREC:to_pairs_file (495) Aug-18 12:02:27.863 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1406; name: POREC:to_pairs_file (495); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d2/64734ce43230987181e7a1eb214947] Aug-18 12:02:27.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:02:27.892 [Task submitter] INFO nextflow.Session - [60/c89535] Submitted process > POREC:to_pairs_file (496) Aug-18 12:02:37.913 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 409 -- tasks to be submitted are shown below ~> TaskHandler[id: 1408; name: POREC:to_pairs_file (497); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/ad40b703e4487dcb981631ec8ed17f] ~> TaskHandler[id: 1409; name: POREC:to_pairs_file (498); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/43d80b9086fb53ae8aa82e61af9d04] ~> TaskHandler[id: 1410; name: POREC:to_pairs_file (499); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/8ca6d873da81da75e0de2db46e588c] ~> TaskHandler[id: 1411; name: POREC:to_pairs_file (500); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/2f45d1579996d28c1c73fe582b8ce1] ~> TaskHandler[id: 1412; name: POREC:to_pairs_file (501); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/dddaa72cb3c04d8a89740bd08a9b72] ~> TaskHandler[id: 1413; name: POREC:to_pairs_file (502); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/df7188b2e49914bb5e2aba861e66bd] ~> TaskHandler[id: 1414; name: POREC:to_pairs_file (503); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/20dcbf007179e7e8b268d0e55e291d] ~> TaskHandler[id: 1415; name: POREC:to_pairs_file (504); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/30bb8b5720ec32032c69c262670a1d] ~> TaskHandler[id: 1416; name: POREC:to_pairs_file (505); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/7ee35531a8ae7ef5a1f953912fe2a3] ~> TaskHandler[id: 1417; name: POREC:to_pairs_file (506); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/2d223efc0cc46ca20e71ffb35801e3] .. remaining tasks omitted. Aug-18 12:03:53.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1407; name: POREC:to_pairs_file (496); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/c89535794f0cbe1627770e178199d2] Aug-18 12:04:03.134 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1407; name: POREC:to_pairs_file (496); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/c89535794f0cbe1627770e178199d2] Aug-18 12:04:03.139 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:04:03.140 [Task submitter] INFO nextflow.Session - [b5/ad40b7] Submitted process > POREC:to_pairs_file (497) Aug-18 12:05:38.215 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1408; name: POREC:to_pairs_file (497); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/ad40b703e4487dcb981631ec8ed17f] Aug-18 12:05:38.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:05:38.222 [Task submitter] INFO nextflow.Session - [23/43d80b] Submitted process > POREC:to_pairs_file (498) Aug-18 12:07:12.676 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1409; name: POREC:to_pairs_file (498); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/43d80b9086fb53ae8aa82e61af9d04] Aug-18 12:07:12.701 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:07:12.701 [Task submitter] INFO nextflow.Session - [4b/8ca6d8] Submitted process > POREC:to_pairs_file (499) Aug-18 12:07:38.760 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 406 -- tasks to be submitted are shown below ~> TaskHandler[id: 1411; name: POREC:to_pairs_file (500); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/2f45d1579996d28c1c73fe582b8ce1] ~> TaskHandler[id: 1412; name: POREC:to_pairs_file (501); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/dddaa72cb3c04d8a89740bd08a9b72] ~> TaskHandler[id: 1413; name: POREC:to_pairs_file (502); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/df7188b2e49914bb5e2aba861e66bd] ~> TaskHandler[id: 1414; name: POREC:to_pairs_file (503); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/20dcbf007179e7e8b268d0e55e291d] ~> TaskHandler[id: 1415; name: POREC:to_pairs_file (504); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/30bb8b5720ec32032c69c262670a1d] ~> TaskHandler[id: 1416; name: POREC:to_pairs_file (505); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/7ee35531a8ae7ef5a1f953912fe2a3] ~> TaskHandler[id: 1417; name: POREC:to_pairs_file (506); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/2d223efc0cc46ca20e71ffb35801e3] ~> TaskHandler[id: 1418; name: POREC:to_pairs_file (507); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/71b8ae5ced29672db30f207da6e3b0] ~> TaskHandler[id: 1419; name: POREC:to_pairs_file (508); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e8b07b1426ef6d31ee817b3c356c5c] ~> TaskHandler[id: 1420; name: POREC:to_pairs_file (509); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/46bbcacaafb84b9f1ee39b0117e718] .. remaining tasks omitted. Aug-18 12:08:46.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1410; name: POREC:to_pairs_file (499); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4b/8ca6d873da81da75e0de2db46e588c] Aug-18 12:08:47.031 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:08:47.031 [Task submitter] INFO nextflow.Session - [2e/2f45d1] Submitted process > POREC:to_pairs_file (500) Aug-18 12:08:53.245 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1411; name: POREC:to_pairs_file (500); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/2f45d1579996d28c1c73fe582b8ce1] Aug-18 12:10:20.951 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1411; name: POREC:to_pairs_file (500); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2e/2f45d1579996d28c1c73fe582b8ce1] Aug-18 12:10:20.990 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:10:20.990 [Task submitter] INFO nextflow.Session - [31/dddaa7] Submitted process > POREC:to_pairs_file (501) Aug-18 12:11:54.142 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1412; name: POREC:to_pairs_file (501); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/dddaa72cb3c04d8a89740bd08a9b72] Aug-18 12:11:54.164 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:11:54.184 [Task submitter] INFO nextflow.Session - [b2/df7188] Submitted process > POREC:to_pairs_file (502) Aug-18 12:12:39.260 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 403 -- tasks to be submitted are shown below ~> TaskHandler[id: 1414; name: POREC:to_pairs_file (503); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/20dcbf007179e7e8b268d0e55e291d] ~> TaskHandler[id: 1415; name: POREC:to_pairs_file (504); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/30bb8b5720ec32032c69c262670a1d] ~> TaskHandler[id: 1416; name: POREC:to_pairs_file (505); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/7ee35531a8ae7ef5a1f953912fe2a3] ~> TaskHandler[id: 1417; name: POREC:to_pairs_file (506); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/2d223efc0cc46ca20e71ffb35801e3] ~> TaskHandler[id: 1418; name: POREC:to_pairs_file (507); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/71b8ae5ced29672db30f207da6e3b0] ~> TaskHandler[id: 1419; name: POREC:to_pairs_file (508); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e8b07b1426ef6d31ee817b3c356c5c] ~> TaskHandler[id: 1420; name: POREC:to_pairs_file (509); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/46bbcacaafb84b9f1ee39b0117e718] ~> TaskHandler[id: 1421; name: POREC:to_pairs_file (510); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/cf602a7ed7abcd93ba9ac84587d9de] ~> TaskHandler[id: 1422; name: POREC:to_pairs_file (511); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/b1f2e914e2acac5ed0ecc8432047bf] ~> TaskHandler[id: 1423; name: POREC:to_pairs_file (512); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/11632dfc2c91ff8bd21092608abd07] .. remaining tasks omitted. Aug-18 12:13:26.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1413; name: POREC:to_pairs_file (502); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b2/df7188b2e49914bb5e2aba861e66bd] Aug-18 12:13:26.211 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:13:26.211 [Task submitter] INFO nextflow.Session - [2f/20dcbf] Submitted process > POREC:to_pairs_file (503) Aug-18 12:13:53.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1414; name: POREC:to_pairs_file (503); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/20dcbf007179e7e8b268d0e55e291d] Aug-18 12:14:59.933 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1414; name: POREC:to_pairs_file (503); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/20dcbf007179e7e8b268d0e55e291d] Aug-18 12:14:59.937 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:14:59.937 [Task submitter] INFO nextflow.Session - [f5/30bb8b] Submitted process > POREC:to_pairs_file (504) Aug-18 12:16:34.633 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1415; name: POREC:to_pairs_file (504); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/30bb8b5720ec32032c69c262670a1d] Aug-18 12:16:34.714 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:16:34.739 [Task submitter] INFO nextflow.Session - [55/7ee355] Submitted process > POREC:to_pairs_file (505) Aug-18 12:17:39.844 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 400 -- tasks to be submitted are shown below ~> TaskHandler[id: 1417; name: POREC:to_pairs_file (506); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/2d223efc0cc46ca20e71ffb35801e3] ~> TaskHandler[id: 1418; name: POREC:to_pairs_file (507); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/71b8ae5ced29672db30f207da6e3b0] ~> TaskHandler[id: 1419; name: POREC:to_pairs_file (508); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e8b07b1426ef6d31ee817b3c356c5c] ~> TaskHandler[id: 1420; name: POREC:to_pairs_file (509); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/46bbcacaafb84b9f1ee39b0117e718] ~> TaskHandler[id: 1421; name: POREC:to_pairs_file (510); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/cf602a7ed7abcd93ba9ac84587d9de] ~> TaskHandler[id: 1422; name: POREC:to_pairs_file (511); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/b1f2e914e2acac5ed0ecc8432047bf] ~> TaskHandler[id: 1423; name: POREC:to_pairs_file (512); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/11632dfc2c91ff8bd21092608abd07] ~> TaskHandler[id: 1424; name: POREC:to_pairs_file (513); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f45bab44ffd160aa163999c1e1c4fa] ~> TaskHandler[id: 1425; name: POREC:to_pairs_file (514); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/7778663da2e7ef544b5b2209c48d19] ~> TaskHandler[id: 1426; name: POREC:to_pairs_file (515); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6bfc0c5f6861cd61e39d5dec2ee687] .. remaining tasks omitted. Aug-18 12:18:09.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1416; name: POREC:to_pairs_file (505); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/7ee35531a8ae7ef5a1f953912fe2a3] Aug-18 12:18:09.207 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:18:09.207 [Task submitter] INFO nextflow.Session - [ed/2d223e] Submitted process > POREC:to_pairs_file (506) Aug-18 12:18:53.322 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1417; name: POREC:to_pairs_file (506); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/2d223efc0cc46ca20e71ffb35801e3] Aug-18 12:19:43.191 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1417; name: POREC:to_pairs_file (506); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/2d223efc0cc46ca20e71ffb35801e3] Aug-18 12:19:43.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:19:43.234 [Task submitter] INFO nextflow.Session - [0b/71b8ae] Submitted process > POREC:to_pairs_file (507) Aug-18 12:21:18.913 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1418; name: POREC:to_pairs_file (507); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/71b8ae5ced29672db30f207da6e3b0] Aug-18 12:21:18.917 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:21:18.944 [Task submitter] INFO nextflow.Session - [2f/e8b07b] Submitted process > POREC:to_pairs_file (508) Aug-18 12:22:40.077 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 397 -- tasks to be submitted are shown below ~> TaskHandler[id: 1420; name: POREC:to_pairs_file (509); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/46bbcacaafb84b9f1ee39b0117e718] ~> TaskHandler[id: 1421; name: POREC:to_pairs_file (510); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/cf602a7ed7abcd93ba9ac84587d9de] ~> TaskHandler[id: 1422; name: POREC:to_pairs_file (511); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/b1f2e914e2acac5ed0ecc8432047bf] ~> TaskHandler[id: 1423; name: POREC:to_pairs_file (512); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/11632dfc2c91ff8bd21092608abd07] ~> TaskHandler[id: 1424; name: POREC:to_pairs_file (513); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f45bab44ffd160aa163999c1e1c4fa] ~> TaskHandler[id: 1425; name: POREC:to_pairs_file (514); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/7778663da2e7ef544b5b2209c48d19] ~> TaskHandler[id: 1426; name: POREC:to_pairs_file (515); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6bfc0c5f6861cd61e39d5dec2ee687] ~> TaskHandler[id: 1427; name: POREC:to_pairs_file (516); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/87ca50f37818090eb0d6c03c3381a4] ~> TaskHandler[id: 1428; name: POREC:to_pairs_file (517); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/1fb21c804461e4345349112df7cdd1] ~> TaskHandler[id: 1429; name: POREC:to_pairs_file (518); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/9d303a256613e863a4f58298388ef9] .. remaining tasks omitted. Aug-18 12:22:53.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1419; name: POREC:to_pairs_file (508); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e8b07b1426ef6d31ee817b3c356c5c] Aug-18 12:22:53.734 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:22:53.734 [Task submitter] INFO nextflow.Session - [f8/46bbca] Submitted process > POREC:to_pairs_file (509) Aug-18 12:23:53.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1420; name: POREC:to_pairs_file (509); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/46bbcacaafb84b9f1ee39b0117e718] Aug-18 12:24:28.142 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1420; name: POREC:to_pairs_file (509); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/46bbcacaafb84b9f1ee39b0117e718] Aug-18 12:24:28.172 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:24:28.172 [Task submitter] INFO nextflow.Session - [5f/cf602a] Submitted process > POREC:to_pairs_file (510) Aug-18 12:26:02.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1421; name: POREC:to_pairs_file (510); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/cf602a7ed7abcd93ba9ac84587d9de] Aug-18 12:26:03.011 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:26:03.012 [Task submitter] INFO nextflow.Session - [1b/b1f2e9] Submitted process > POREC:to_pairs_file (511) Aug-18 12:27:37.165 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1422; name: POREC:to_pairs_file (511); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/b1f2e914e2acac5ed0ecc8432047bf] Aug-18 12:27:37.171 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:27:37.171 [Task submitter] INFO nextflow.Session - [45/11632d] Submitted process > POREC:to_pairs_file (512) Aug-18 12:27:40.177 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 393 -- tasks to be submitted are shown below ~> TaskHandler[id: 1424; name: POREC:to_pairs_file (513); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f45bab44ffd160aa163999c1e1c4fa] ~> TaskHandler[id: 1425; name: POREC:to_pairs_file (514); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/7778663da2e7ef544b5b2209c48d19] ~> TaskHandler[id: 1426; name: POREC:to_pairs_file (515); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6bfc0c5f6861cd61e39d5dec2ee687] ~> TaskHandler[id: 1427; name: POREC:to_pairs_file (516); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/87ca50f37818090eb0d6c03c3381a4] ~> TaskHandler[id: 1428; name: POREC:to_pairs_file (517); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/1fb21c804461e4345349112df7cdd1] ~> TaskHandler[id: 1429; name: POREC:to_pairs_file (518); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/9d303a256613e863a4f58298388ef9] ~> TaskHandler[id: 1430; name: POREC:to_pairs_file (519); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/6fee94244cc1c871ada36652015349] ~> TaskHandler[id: 1431; name: POREC:to_pairs_file (520); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/dc0621c493062a500d8e2a4fbab381] ~> TaskHandler[id: 1432; name: POREC:to_pairs_file (521); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8683b8ade8f3d35cdcc6566db5e42e] ~> TaskHandler[id: 1433; name: POREC:to_pairs_file (522); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/415d2fa8b6a48cfd01ce9f00ae27ab] .. remaining tasks omitted. Aug-18 12:28:53.388 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1423; name: POREC:to_pairs_file (512); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/11632dfc2c91ff8bd21092608abd07] Aug-18 12:29:10.601 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1423; name: POREC:to_pairs_file (512); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/45/11632dfc2c91ff8bd21092608abd07] Aug-18 12:29:10.642 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:29:10.642 [Task submitter] INFO nextflow.Session - [82/f45bab] Submitted process > POREC:to_pairs_file (513) Aug-18 12:30:45.011 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1424; name: POREC:to_pairs_file (513); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/82/f45bab44ffd160aa163999c1e1c4fa] Aug-18 12:30:45.051 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:30:45.051 [Task submitter] INFO nextflow.Session - [5f/777866] Submitted process > POREC:to_pairs_file (514) Aug-18 12:32:20.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1425; name: POREC:to_pairs_file (514); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/7778663da2e7ef544b5b2209c48d19] Aug-18 12:32:20.518 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:32:20.518 [Task submitter] INFO nextflow.Session - [ce/6bfc0c] Submitted process > POREC:to_pairs_file (515) Aug-18 12:32:40.557 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 390 -- tasks to be submitted are shown below ~> TaskHandler[id: 1427; name: POREC:to_pairs_file (516); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/87ca50f37818090eb0d6c03c3381a4] ~> TaskHandler[id: 1428; name: POREC:to_pairs_file (517); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/1fb21c804461e4345349112df7cdd1] ~> TaskHandler[id: 1429; name: POREC:to_pairs_file (518); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/9d303a256613e863a4f58298388ef9] ~> TaskHandler[id: 1430; name: POREC:to_pairs_file (519); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/6fee94244cc1c871ada36652015349] ~> TaskHandler[id: 1431; name: POREC:to_pairs_file (520); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/dc0621c493062a500d8e2a4fbab381] ~> TaskHandler[id: 1432; name: POREC:to_pairs_file (521); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8683b8ade8f3d35cdcc6566db5e42e] ~> TaskHandler[id: 1433; name: POREC:to_pairs_file (522); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/415d2fa8b6a48cfd01ce9f00ae27ab] ~> TaskHandler[id: 1434; name: POREC:to_pairs_file (523); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/61f16caaf69651aa962c5812e2824b] ~> TaskHandler[id: 1435; name: POREC:to_pairs_file (524); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/bd783dcd224acd8f689176dea8025c] ~> TaskHandler[id: 1436; name: POREC:to_pairs_file (525); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/41623b32da4629c4f3534409742b63] .. remaining tasks omitted. Aug-18 12:33:53.408 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1426; name: POREC:to_pairs_file (515); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6bfc0c5f6861cd61e39d5dec2ee687] Aug-18 12:33:54.655 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1426; name: POREC:to_pairs_file (515); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/6bfc0c5f6861cd61e39d5dec2ee687] Aug-18 12:33:54.660 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:33:54.660 [Task submitter] INFO nextflow.Session - [03/87ca50] Submitted process > POREC:to_pairs_file (516) Aug-18 12:35:29.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1427; name: POREC:to_pairs_file (516); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/87ca50f37818090eb0d6c03c3381a4] Aug-18 12:35:29.152 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:35:29.152 [Task submitter] INFO nextflow.Session - [26/1fb21c] Submitted process > POREC:to_pairs_file (517) Aug-18 12:37:07.883 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1428; name: POREC:to_pairs_file (517); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/1fb21c804461e4345349112df7cdd1] Aug-18 12:37:07.888 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:37:07.888 [Task submitter] INFO nextflow.Session - [af/9d303a] Submitted process > POREC:to_pairs_file (518) Aug-18 12:37:40.942 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 387 -- tasks to be submitted are shown below ~> TaskHandler[id: 1430; name: POREC:to_pairs_file (519); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/6fee94244cc1c871ada36652015349] ~> TaskHandler[id: 1431; name: POREC:to_pairs_file (520); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/dc0621c493062a500d8e2a4fbab381] ~> TaskHandler[id: 1432; name: POREC:to_pairs_file (521); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8683b8ade8f3d35cdcc6566db5e42e] ~> TaskHandler[id: 1433; name: POREC:to_pairs_file (522); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/415d2fa8b6a48cfd01ce9f00ae27ab] ~> TaskHandler[id: 1434; name: POREC:to_pairs_file (523); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/61f16caaf69651aa962c5812e2824b] ~> TaskHandler[id: 1435; name: POREC:to_pairs_file (524); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/bd783dcd224acd8f689176dea8025c] ~> TaskHandler[id: 1436; name: POREC:to_pairs_file (525); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/41623b32da4629c4f3534409742b63] ~> TaskHandler[id: 1437; name: POREC:to_pairs_file (526); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/d74f34b1e07ff0d60bb8c66f3ca50e] ~> TaskHandler[id: 1438; name: POREC:to_pairs_file (527); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/269833fd0a6c065007b585c8a94058] ~> TaskHandler[id: 1439; name: POREC:to_pairs_file (528); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1585a7df8922bf46c267eea0cdc225] .. remaining tasks omitted. Aug-18 12:38:43.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1429; name: POREC:to_pairs_file (518); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/9d303a256613e863a4f58298388ef9] Aug-18 12:38:43.475 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:38:43.475 [Task submitter] INFO nextflow.Session - [6f/6fee94] Submitted process > POREC:to_pairs_file (519) Aug-18 12:38:53.444 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1430; name: POREC:to_pairs_file (519); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/6fee94244cc1c871ada36652015349] Aug-18 12:40:20.392 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1430; name: POREC:to_pairs_file (519); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6f/6fee94244cc1c871ada36652015349] Aug-18 12:40:20.433 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:40:20.433 [Task submitter] INFO nextflow.Session - [83/dc0621] Submitted process > POREC:to_pairs_file (520) Aug-18 12:41:54.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1431; name: POREC:to_pairs_file (520); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/dc0621c493062a500d8e2a4fbab381] Aug-18 12:41:54.153 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:41:54.153 [Task submitter] INFO nextflow.Session - [e4/8683b8] Submitted process > POREC:to_pairs_file (521) Aug-18 12:42:41.232 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 384 -- tasks to be submitted are shown below ~> TaskHandler[id: 1433; name: POREC:to_pairs_file (522); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/415d2fa8b6a48cfd01ce9f00ae27ab] ~> TaskHandler[id: 1434; name: POREC:to_pairs_file (523); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/61f16caaf69651aa962c5812e2824b] ~> TaskHandler[id: 1435; name: POREC:to_pairs_file (524); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/bd783dcd224acd8f689176dea8025c] ~> TaskHandler[id: 1436; name: POREC:to_pairs_file (525); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/41623b32da4629c4f3534409742b63] ~> TaskHandler[id: 1437; name: POREC:to_pairs_file (526); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/d74f34b1e07ff0d60bb8c66f3ca50e] ~> TaskHandler[id: 1438; name: POREC:to_pairs_file (527); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/269833fd0a6c065007b585c8a94058] ~> TaskHandler[id: 1439; name: POREC:to_pairs_file (528); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1585a7df8922bf46c267eea0cdc225] ~> TaskHandler[id: 1440; name: POREC:to_pairs_file (529); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/b3e39b4b2b5d92e20684810494ef7a] ~> TaskHandler[id: 1441; name: POREC:to_pairs_file (530); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/2f34896e4c55be30747051957a590f] ~> TaskHandler[id: 1442; name: POREC:to_pairs_file (531); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/ee95808c38d2efe8e8b48068b87b98] .. remaining tasks omitted. Aug-18 12:43:28.606 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1432; name: POREC:to_pairs_file (521); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8683b8ade8f3d35cdcc6566db5e42e] Aug-18 12:43:28.638 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:43:28.638 [Task submitter] INFO nextflow.Session - [35/415d2f] Submitted process > POREC:to_pairs_file (522) Aug-18 12:43:53.531 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1433; name: POREC:to_pairs_file (522); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/415d2fa8b6a48cfd01ce9f00ae27ab] Aug-18 12:45:01.435 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1433; name: POREC:to_pairs_file (522); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/415d2fa8b6a48cfd01ce9f00ae27ab] Aug-18 12:45:01.440 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:45:01.440 [Task submitter] INFO nextflow.Session - [0d/61f16c] Submitted process > POREC:to_pairs_file (523) Aug-18 12:46:34.084 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1434; name: POREC:to_pairs_file (523); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0d/61f16caaf69651aa962c5812e2824b] Aug-18 12:46:34.131 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:46:34.131 [Task submitter] INFO nextflow.Session - [b4/bd783d] Submitted process > POREC:to_pairs_file (524) Aug-18 12:47:41.331 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 381 -- tasks to be submitted are shown below ~> TaskHandler[id: 1436; name: POREC:to_pairs_file (525); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/41623b32da4629c4f3534409742b63] ~> TaskHandler[id: 1437; name: POREC:to_pairs_file (526); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/d74f34b1e07ff0d60bb8c66f3ca50e] ~> TaskHandler[id: 1438; name: POREC:to_pairs_file (527); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/269833fd0a6c065007b585c8a94058] ~> TaskHandler[id: 1439; name: POREC:to_pairs_file (528); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1585a7df8922bf46c267eea0cdc225] ~> TaskHandler[id: 1440; name: POREC:to_pairs_file (529); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/b3e39b4b2b5d92e20684810494ef7a] ~> TaskHandler[id: 1441; name: POREC:to_pairs_file (530); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/2f34896e4c55be30747051957a590f] ~> TaskHandler[id: 1442; name: POREC:to_pairs_file (531); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/ee95808c38d2efe8e8b48068b87b98] ~> TaskHandler[id: 1443; name: POREC:to_pairs_file (532); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/1d619f6b8326b9fb4eebc6523beff3] ~> TaskHandler[id: 1444; name: POREC:to_pairs_file (533); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/ba30b0fe8517c3a194a512294292f6] ~> TaskHandler[id: 1445; name: POREC:to_pairs_file (534); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/d5b22d93dabf164904dc9573296865] .. remaining tasks omitted. Aug-18 12:48:08.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1435; name: POREC:to_pairs_file (524); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b4/bd783dcd224acd8f689176dea8025c] Aug-18 12:48:08.091 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:48:08.091 [Task submitter] INFO nextflow.Session - [67/41623b] Submitted process > POREC:to_pairs_file (525) Aug-18 12:48:53.600 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1436; name: POREC:to_pairs_file (525); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/41623b32da4629c4f3534409742b63] Aug-18 12:49:41.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1436; name: POREC:to_pairs_file (525); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/41623b32da4629c4f3534409742b63] Aug-18 12:49:41.317 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:49:41.318 [Task submitter] INFO nextflow.Session - [5a/d74f34] Submitted process > POREC:to_pairs_file (526) Aug-18 12:51:15.752 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1437; name: POREC:to_pairs_file (526); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/d74f34b1e07ff0d60bb8c66f3ca50e] Aug-18 12:51:15.773 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:51:15.773 [Task submitter] INFO nextflow.Session - [09/269833] Submitted process > POREC:to_pairs_file (527) Aug-18 12:52:41.915 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 378 -- tasks to be submitted are shown below ~> TaskHandler[id: 1439; name: POREC:to_pairs_file (528); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1585a7df8922bf46c267eea0cdc225] ~> TaskHandler[id: 1440; name: POREC:to_pairs_file (529); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/b3e39b4b2b5d92e20684810494ef7a] ~> TaskHandler[id: 1441; name: POREC:to_pairs_file (530); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/2f34896e4c55be30747051957a590f] ~> TaskHandler[id: 1442; name: POREC:to_pairs_file (531); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/ee95808c38d2efe8e8b48068b87b98] ~> TaskHandler[id: 1443; name: POREC:to_pairs_file (532); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/1d619f6b8326b9fb4eebc6523beff3] ~> TaskHandler[id: 1444; name: POREC:to_pairs_file (533); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/ba30b0fe8517c3a194a512294292f6] ~> TaskHandler[id: 1445; name: POREC:to_pairs_file (534); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/d5b22d93dabf164904dc9573296865] ~> TaskHandler[id: 1446; name: POREC:to_pairs_file (535); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/ea0aa14ac1355480e9688d41a00e29] ~> TaskHandler[id: 1447; name: POREC:to_pairs_file (536); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/9bd051031453f9cc1145fd310b007f] ~> TaskHandler[id: 1448; name: POREC:to_pairs_file (537); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c3cad5c03087d44cd15cb9d61051b] .. remaining tasks omitted. Aug-18 12:52:48.813 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1438; name: POREC:to_pairs_file (527); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/269833fd0a6c065007b585c8a94058] Aug-18 12:52:48.817 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:52:48.817 [Task submitter] INFO nextflow.Session - [d4/1585a7] Submitted process > POREC:to_pairs_file (528) Aug-18 12:53:53.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1439; name: POREC:to_pairs_file (528); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1585a7df8922bf46c267eea0cdc225] Aug-18 12:54:21.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1439; name: POREC:to_pairs_file (528); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/1585a7df8922bf46c267eea0cdc225] Aug-18 12:54:21.342 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:54:21.342 [Task submitter] INFO nextflow.Session - [a6/b3e39b] Submitted process > POREC:to_pairs_file (529) Aug-18 12:55:53.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1440; name: POREC:to_pairs_file (529); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/b3e39b4b2b5d92e20684810494ef7a] Aug-18 12:55:53.997 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:55:53.997 [Task submitter] INFO nextflow.Session - [60/2f3489] Submitted process > POREC:to_pairs_file (530) Aug-18 12:57:27.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1441; name: POREC:to_pairs_file (530); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/2f34896e4c55be30747051957a590f] Aug-18 12:57:27.143 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:57:27.143 [Task submitter] INFO nextflow.Session - [a0/ee9580] Submitted process > POREC:to_pairs_file (531) Aug-18 12:57:42.177 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 374 -- tasks to be submitted are shown below ~> TaskHandler[id: 1443; name: POREC:to_pairs_file (532); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/1d619f6b8326b9fb4eebc6523beff3] ~> TaskHandler[id: 1444; name: POREC:to_pairs_file (533); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/ba30b0fe8517c3a194a512294292f6] ~> TaskHandler[id: 1445; name: POREC:to_pairs_file (534); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/d5b22d93dabf164904dc9573296865] ~> TaskHandler[id: 1446; name: POREC:to_pairs_file (535); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/ea0aa14ac1355480e9688d41a00e29] ~> TaskHandler[id: 1447; name: POREC:to_pairs_file (536); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/9bd051031453f9cc1145fd310b007f] ~> TaskHandler[id: 1448; name: POREC:to_pairs_file (537); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c3cad5c03087d44cd15cb9d61051b] ~> TaskHandler[id: 1449; name: POREC:to_pairs_file (538); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/f5d0e5ab35023bf0f820c2d0ac97b1] ~> TaskHandler[id: 1450; name: POREC:to_pairs_file (539); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0803ad16b7f346519bbffb850a0537] ~> TaskHandler[id: 1451; name: POREC:to_pairs_file (540); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/726ddf250eb7e0081f3c90cd181542] ~> TaskHandler[id: 1452; name: POREC:to_pairs_file (541); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/07ad2a099cc3ffc2b27af000842773] .. remaining tasks omitted. Aug-18 12:58:53.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1442; name: POREC:to_pairs_file (531); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/ee95808c38d2efe8e8b48068b87b98] Aug-18 12:59:00.579 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1442; name: POREC:to_pairs_file (531); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/ee95808c38d2efe8e8b48068b87b98] Aug-18 12:59:00.583 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 12:59:00.583 [Task submitter] INFO nextflow.Session - [41/1d619f] Submitted process > POREC:to_pairs_file (532) Aug-18 13:00:31.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1443; name: POREC:to_pairs_file (532); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/1d619f6b8326b9fb4eebc6523beff3] Aug-18 13:00:31.604 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:00:31.604 [Task submitter] INFO nextflow.Session - [13/ba30b0] Submitted process > POREC:to_pairs_file (533) Aug-18 13:02:03.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1444; name: POREC:to_pairs_file (533); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/13/ba30b0fe8517c3a194a512294292f6] Aug-18 13:02:03.195 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:02:03.195 [Task submitter] INFO nextflow.Session - [a8/d5b22d] Submitted process > POREC:to_pairs_file (534) Aug-18 13:02:42.254 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 371 -- tasks to be submitted are shown below ~> TaskHandler[id: 1446; name: POREC:to_pairs_file (535); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/ea0aa14ac1355480e9688d41a00e29] ~> TaskHandler[id: 1447; name: POREC:to_pairs_file (536); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/9bd051031453f9cc1145fd310b007f] ~> TaskHandler[id: 1448; name: POREC:to_pairs_file (537); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c3cad5c03087d44cd15cb9d61051b] ~> TaskHandler[id: 1449; name: POREC:to_pairs_file (538); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/f5d0e5ab35023bf0f820c2d0ac97b1] ~> TaskHandler[id: 1450; name: POREC:to_pairs_file (539); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0803ad16b7f346519bbffb850a0537] ~> TaskHandler[id: 1451; name: POREC:to_pairs_file (540); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/726ddf250eb7e0081f3c90cd181542] ~> TaskHandler[id: 1452; name: POREC:to_pairs_file (541); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/07ad2a099cc3ffc2b27af000842773] ~> TaskHandler[id: 1453; name: POREC:to_pairs_file (542); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/06250554bed526354cc7d39cd10a02] ~> TaskHandler[id: 1454; name: POREC:to_pairs_file (543); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/33541dfdfa0f4d6ba577b6e58800e2] ~> TaskHandler[id: 1455; name: POREC:to_pairs_file (544); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/3cc06f30511be42a6be9cfc00f308b] .. remaining tasks omitted. Aug-18 13:03:38.220 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1445; name: POREC:to_pairs_file (534); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/d5b22d93dabf164904dc9573296865] Aug-18 13:03:38.224 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:03:38.224 [Task submitter] INFO nextflow.Session - [07/ea0aa1] Submitted process > POREC:to_pairs_file (535) Aug-18 13:03:53.797 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1446; name: POREC:to_pairs_file (535); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/ea0aa14ac1355480e9688d41a00e29] Aug-18 13:05:13.395 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1446; name: POREC:to_pairs_file (535); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/ea0aa14ac1355480e9688d41a00e29] Aug-18 13:05:13.400 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:05:13.400 [Task submitter] INFO nextflow.Session - [41/9bd051] Submitted process > POREC:to_pairs_file (536) Aug-18 13:06:48.713 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1447; name: POREC:to_pairs_file (536); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/9bd051031453f9cc1145fd310b007f] Aug-18 13:06:48.756 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:06:48.756 [Task submitter] INFO nextflow.Session - [e4/8c3cad] Submitted process > POREC:to_pairs_file (537) Aug-18 13:07:42.894 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 368 -- tasks to be submitted are shown below ~> TaskHandler[id: 1449; name: POREC:to_pairs_file (538); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/f5d0e5ab35023bf0f820c2d0ac97b1] ~> TaskHandler[id: 1450; name: POREC:to_pairs_file (539); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0803ad16b7f346519bbffb850a0537] ~> TaskHandler[id: 1451; name: POREC:to_pairs_file (540); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/726ddf250eb7e0081f3c90cd181542] ~> TaskHandler[id: 1452; name: POREC:to_pairs_file (541); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/07ad2a099cc3ffc2b27af000842773] ~> TaskHandler[id: 1453; name: POREC:to_pairs_file (542); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/06250554bed526354cc7d39cd10a02] ~> TaskHandler[id: 1454; name: POREC:to_pairs_file (543); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/33541dfdfa0f4d6ba577b6e58800e2] ~> TaskHandler[id: 1455; name: POREC:to_pairs_file (544); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/3cc06f30511be42a6be9cfc00f308b] ~> TaskHandler[id: 1456; name: POREC:to_pairs_file (545); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/8dcae031a844c747b04f28d96401f3] ~> TaskHandler[id: 1457; name: POREC:to_pairs_file (546); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/9abd369cbfd7153f5a710ff4f5d1f2] ~> TaskHandler[id: 1458; name: POREC:to_pairs_file (547); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/3556325f50dda5503e873e9a0b6453] .. remaining tasks omitted. Aug-18 13:08:23.565 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1448; name: POREC:to_pairs_file (537); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/8c3cad5c03087d44cd15cb9d61051b] Aug-18 13:08:23.614 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:08:23.614 [Task submitter] INFO nextflow.Session - [75/f5d0e5] Submitted process > POREC:to_pairs_file (538) Aug-18 13:08:53.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1449; name: POREC:to_pairs_file (538); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/f5d0e5ab35023bf0f820c2d0ac97b1] Aug-18 13:09:56.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1449; name: POREC:to_pairs_file (538); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/f5d0e5ab35023bf0f820c2d0ac97b1] Aug-18 13:09:56.906 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:09:56.906 [Task submitter] INFO nextflow.Session - [89/0803ad] Submitted process > POREC:to_pairs_file (539) Aug-18 13:11:32.889 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1450; name: POREC:to_pairs_file (539); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/0803ad16b7f346519bbffb850a0537] Aug-18 13:11:32.925 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:11:32.925 [Task submitter] INFO nextflow.Session - [b8/726ddf] Submitted process > POREC:to_pairs_file (540) Aug-18 13:12:43.034 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 365 -- tasks to be submitted are shown below ~> TaskHandler[id: 1452; name: POREC:to_pairs_file (541); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/07ad2a099cc3ffc2b27af000842773] ~> TaskHandler[id: 1453; name: POREC:to_pairs_file (542); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/06250554bed526354cc7d39cd10a02] ~> TaskHandler[id: 1454; name: POREC:to_pairs_file (543); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/33541dfdfa0f4d6ba577b6e58800e2] ~> TaskHandler[id: 1455; name: POREC:to_pairs_file (544); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/3cc06f30511be42a6be9cfc00f308b] ~> TaskHandler[id: 1456; name: POREC:to_pairs_file (545); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/8dcae031a844c747b04f28d96401f3] ~> TaskHandler[id: 1457; name: POREC:to_pairs_file (546); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/9abd369cbfd7153f5a710ff4f5d1f2] ~> TaskHandler[id: 1458; name: POREC:to_pairs_file (547); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/3556325f50dda5503e873e9a0b6453] ~> TaskHandler[id: 1459; name: POREC:to_pairs_file (548); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/6a1030d8e9165b5840d3df8c085109] ~> TaskHandler[id: 1460; name: POREC:to_pairs_file (549); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/43dd516a11ba438cfe89b8c76e4902] ~> TaskHandler[id: 1461; name: POREC:to_pairs_file (550); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c81e0bf7b50fcac64eac8c724fe546] .. remaining tasks omitted. Aug-18 13:13:07.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1451; name: POREC:to_pairs_file (540); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/726ddf250eb7e0081f3c90cd181542] Aug-18 13:13:07.221 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:13:07.221 [Task submitter] INFO nextflow.Session - [bf/07ad2a] Submitted process > POREC:to_pairs_file (541) Aug-18 13:13:53.879 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1452; name: POREC:to_pairs_file (541); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/07ad2a099cc3ffc2b27af000842773] Aug-18 13:14:42.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1452; name: POREC:to_pairs_file (541); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/07ad2a099cc3ffc2b27af000842773] Aug-18 13:14:42.474 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:14:42.474 [Task submitter] INFO nextflow.Session - [83/062505] Submitted process > POREC:to_pairs_file (542) Aug-18 13:16:16.369 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1453; name: POREC:to_pairs_file (542); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/06250554bed526354cc7d39cd10a02] Aug-18 13:16:16.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:16:16.379 [Task submitter] INFO nextflow.Session - [2a/33541d] Submitted process > POREC:to_pairs_file (543) Aug-18 13:17:43.503 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 362 -- tasks to be submitted are shown below ~> TaskHandler[id: 1455; name: POREC:to_pairs_file (544); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/3cc06f30511be42a6be9cfc00f308b] ~> TaskHandler[id: 1456; name: POREC:to_pairs_file (545); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/8dcae031a844c747b04f28d96401f3] ~> TaskHandler[id: 1457; name: POREC:to_pairs_file (546); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/9abd369cbfd7153f5a710ff4f5d1f2] ~> TaskHandler[id: 1458; name: POREC:to_pairs_file (547); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/3556325f50dda5503e873e9a0b6453] ~> TaskHandler[id: 1459; name: POREC:to_pairs_file (548); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/6a1030d8e9165b5840d3df8c085109] ~> TaskHandler[id: 1460; name: POREC:to_pairs_file (549); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/43dd516a11ba438cfe89b8c76e4902] ~> TaskHandler[id: 1461; name: POREC:to_pairs_file (550); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c81e0bf7b50fcac64eac8c724fe546] ~> TaskHandler[id: 1462; name: POREC:to_pairs_file (551); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/497cc160f165a2c399d866b365b5f8] ~> TaskHandler[id: 1463; name: POREC:to_pairs_file (552); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/7b01668054c7aef4f85daa7d526d0e] ~> TaskHandler[id: 1464; name: POREC:to_pairs_file (553); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/ebbb1f9a882b37b683537d4f633631] .. remaining tasks omitted. Aug-18 13:17:51.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1454; name: POREC:to_pairs_file (543); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/33541dfdfa0f4d6ba577b6e58800e2] Aug-18 13:17:51.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:17:51.234 [Task submitter] INFO nextflow.Session - [c1/3cc06f] Submitted process > POREC:to_pairs_file (544) Aug-18 13:18:53.929 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1455; name: POREC:to_pairs_file (544); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/3cc06f30511be42a6be9cfc00f308b] Aug-18 13:19:25.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1455; name: POREC:to_pairs_file (544); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c1/3cc06f30511be42a6be9cfc00f308b] Aug-18 13:19:25.608 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:19:25.609 [Task submitter] INFO nextflow.Session - [ed/8dcae0] Submitted process > POREC:to_pairs_file (545) Aug-18 13:20:59.986 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1456; name: POREC:to_pairs_file (545); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/8dcae031a844c747b04f28d96401f3] Aug-18 13:21:00.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:21:00.119 [Task submitter] INFO nextflow.Session - [fa/9abd36] Submitted process > POREC:to_pairs_file (546) Aug-18 13:22:36.069 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1457; name: POREC:to_pairs_file (546); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/9abd369cbfd7153f5a710ff4f5d1f2] Aug-18 13:22:36.073 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:22:36.073 [Task submitter] INFO nextflow.Session - [10/355632] Submitted process > POREC:to_pairs_file (547) Aug-18 13:22:44.088 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 358 -- tasks to be submitted are shown below ~> TaskHandler[id: 1459; name: POREC:to_pairs_file (548); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/6a1030d8e9165b5840d3df8c085109] ~> TaskHandler[id: 1460; name: POREC:to_pairs_file (549); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/43dd516a11ba438cfe89b8c76e4902] ~> TaskHandler[id: 1461; name: POREC:to_pairs_file (550); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c81e0bf7b50fcac64eac8c724fe546] ~> TaskHandler[id: 1462; name: POREC:to_pairs_file (551); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/497cc160f165a2c399d866b365b5f8] ~> TaskHandler[id: 1463; name: POREC:to_pairs_file (552); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/7b01668054c7aef4f85daa7d526d0e] ~> TaskHandler[id: 1464; name: POREC:to_pairs_file (553); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/ebbb1f9a882b37b683537d4f633631] ~> TaskHandler[id: 1465; name: POREC:to_pairs_file (554); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/0ea1ad7d30ea6cfa244438421fec49] ~> TaskHandler[id: 1466; name: POREC:to_pairs_file (555); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/84c1253534a0e3daf9c522f872ebc3] ~> TaskHandler[id: 1467; name: POREC:to_pairs_file (556); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/43c6e68044430d62f9e0570148157b] ~> TaskHandler[id: 1468; name: POREC:to_pairs_file (557); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/c393c401eb40d9c10ba7c60555612b] .. remaining tasks omitted. Aug-18 13:23:54.009 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1458; name: POREC:to_pairs_file (547); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/3556325f50dda5503e873e9a0b6453] Aug-18 13:24:09.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1458; name: POREC:to_pairs_file (547); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/10/3556325f50dda5503e873e9a0b6453] Aug-18 13:24:09.576 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:24:09.589 [Task submitter] INFO nextflow.Session - [9a/6a1030] Submitted process > POREC:to_pairs_file (548) Aug-18 13:25:44.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1459; name: POREC:to_pairs_file (548); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/6a1030d8e9165b5840d3df8c085109] Aug-18 13:25:44.298 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:25:44.298 [Task submitter] INFO nextflow.Session - [97/43dd51] Submitted process > POREC:to_pairs_file (549) Aug-18 13:27:18.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1460; name: POREC:to_pairs_file (549); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/97/43dd516a11ba438cfe89b8c76e4902] Aug-18 13:27:18.778 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:27:18.778 [Task submitter] INFO nextflow.Session - [20/c81e0b] Submitted process > POREC:to_pairs_file (550) Aug-18 13:27:44.816 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 355 -- tasks to be submitted are shown below ~> TaskHandler[id: 1462; name: POREC:to_pairs_file (551); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/497cc160f165a2c399d866b365b5f8] ~> TaskHandler[id: 1463; name: POREC:to_pairs_file (552); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/7b01668054c7aef4f85daa7d526d0e] ~> TaskHandler[id: 1464; name: POREC:to_pairs_file (553); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/ebbb1f9a882b37b683537d4f633631] ~> TaskHandler[id: 1465; name: POREC:to_pairs_file (554); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/0ea1ad7d30ea6cfa244438421fec49] ~> TaskHandler[id: 1466; name: POREC:to_pairs_file (555); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/84c1253534a0e3daf9c522f872ebc3] ~> TaskHandler[id: 1467; name: POREC:to_pairs_file (556); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/43c6e68044430d62f9e0570148157b] ~> TaskHandler[id: 1468; name: POREC:to_pairs_file (557); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/c393c401eb40d9c10ba7c60555612b] ~> TaskHandler[id: 1469; name: POREC:to_pairs_file (558); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/be3aa93fb613a3eccc9ad6cb9dc7e1] ~> TaskHandler[id: 1470; name: POREC:to_pairs_file (559); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/de0d2928ce46d43d675a24a68e3cd8] ~> TaskHandler[id: 1471; name: POREC:to_pairs_file (560); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/90ed16320c4e11e274c7f10796f194] .. remaining tasks omitted. Aug-18 13:28:54.012 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1461; name: POREC:to_pairs_file (550); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c81e0bf7b50fcac64eac8c724fe546] Aug-18 13:28:55.262 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1461; name: POREC:to_pairs_file (550); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c81e0bf7b50fcac64eac8c724fe546] Aug-18 13:28:55.310 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:28:55.327 [Task submitter] INFO nextflow.Session - [09/497cc1] Submitted process > POREC:to_pairs_file (551) Aug-18 13:30:34.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1462; name: POREC:to_pairs_file (551); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/497cc160f165a2c399d866b365b5f8] Aug-18 13:30:34.163 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:30:34.163 [Task submitter] INFO nextflow.Session - [21/7b0166] Submitted process > POREC:to_pairs_file (552) Aug-18 13:32:07.872 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1463; name: POREC:to_pairs_file (552); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/7b01668054c7aef4f85daa7d526d0e] Aug-18 13:32:07.917 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:32:07.917 [Task submitter] INFO nextflow.Session - [15/ebbb1f] Submitted process > POREC:to_pairs_file (553) Aug-18 13:32:44.973 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 352 -- tasks to be submitted are shown below ~> TaskHandler[id: 1465; name: POREC:to_pairs_file (554); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/0ea1ad7d30ea6cfa244438421fec49] ~> TaskHandler[id: 1466; name: POREC:to_pairs_file (555); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/84c1253534a0e3daf9c522f872ebc3] ~> TaskHandler[id: 1467; name: POREC:to_pairs_file (556); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/43c6e68044430d62f9e0570148157b] ~> TaskHandler[id: 1468; name: POREC:to_pairs_file (557); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/c393c401eb40d9c10ba7c60555612b] ~> TaskHandler[id: 1469; name: POREC:to_pairs_file (558); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/be3aa93fb613a3eccc9ad6cb9dc7e1] ~> TaskHandler[id: 1470; name: POREC:to_pairs_file (559); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/de0d2928ce46d43d675a24a68e3cd8] ~> TaskHandler[id: 1471; name: POREC:to_pairs_file (560); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/90ed16320c4e11e274c7f10796f194] ~> TaskHandler[id: 1472; name: POREC:to_pairs_file (561); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/479063ec8501b5a33c756079cd269a] ~> TaskHandler[id: 1473; name: POREC:to_pairs_file (562); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/a1878a8fb4ee3b4c1d8b0be314ca60] ~> TaskHandler[id: 1474; name: POREC:to_pairs_file (563); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e872e2ab65cbed2c524daf75ccfb4c] .. remaining tasks omitted. Aug-18 13:33:42.071 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1464; name: POREC:to_pairs_file (553); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/15/ebbb1f9a882b37b683537d4f633631] Aug-18 13:33:42.108 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:33:42.108 [Task submitter] INFO nextflow.Session - [83/0ea1ad] Submitted process > POREC:to_pairs_file (554) Aug-18 13:33:54.107 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1465; name: POREC:to_pairs_file (554); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/0ea1ad7d30ea6cfa244438421fec49] Aug-18 13:35:17.049 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1465; name: POREC:to_pairs_file (554); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/0ea1ad7d30ea6cfa244438421fec49] Aug-18 13:35:17.087 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:35:17.087 [Task submitter] INFO nextflow.Session - [5a/84c125] Submitted process > POREC:to_pairs_file (555) Aug-18 13:36:53.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1466; name: POREC:to_pairs_file (555); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5a/84c1253534a0e3daf9c522f872ebc3] Aug-18 13:36:53.587 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:36:53.587 [Task submitter] INFO nextflow.Session - [86/43c6e6] Submitted process > POREC:to_pairs_file (556) Aug-18 13:37:45.685 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 349 -- tasks to be submitted are shown below ~> TaskHandler[id: 1468; name: POREC:to_pairs_file (557); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/c393c401eb40d9c10ba7c60555612b] ~> TaskHandler[id: 1469; name: POREC:to_pairs_file (558); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/be3aa93fb613a3eccc9ad6cb9dc7e1] ~> TaskHandler[id: 1470; name: POREC:to_pairs_file (559); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/de0d2928ce46d43d675a24a68e3cd8] ~> TaskHandler[id: 1471; name: POREC:to_pairs_file (560); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/90ed16320c4e11e274c7f10796f194] ~> TaskHandler[id: 1472; name: POREC:to_pairs_file (561); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/479063ec8501b5a33c756079cd269a] ~> TaskHandler[id: 1473; name: POREC:to_pairs_file (562); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/a1878a8fb4ee3b4c1d8b0be314ca60] ~> TaskHandler[id: 1474; name: POREC:to_pairs_file (563); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e872e2ab65cbed2c524daf75ccfb4c] ~> TaskHandler[id: 1475; name: POREC:to_pairs_file (564); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/ac37ee6147e8ed32464f62b3fb0077] ~> TaskHandler[id: 1476; name: POREC:to_pairs_file (565); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/c141be517e0a7fa1896c3de4f35be1] ~> TaskHandler[id: 1477; name: POREC:to_pairs_file (566); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/0331b3c63d455ac65c224149d64805] .. remaining tasks omitted. Aug-18 13:38:26.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1467; name: POREC:to_pairs_file (556); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/43c6e68044430d62f9e0570148157b] Aug-18 13:38:26.912 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:38:26.912 [Task submitter] INFO nextflow.Session - [95/c393c4] Submitted process > POREC:to_pairs_file (557) Aug-18 13:38:54.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1468; name: POREC:to_pairs_file (557); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/c393c401eb40d9c10ba7c60555612b] Aug-18 13:39:59.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1468; name: POREC:to_pairs_file (557); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/c393c401eb40d9c10ba7c60555612b] Aug-18 13:39:59.289 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:39:59.289 [Task submitter] INFO nextflow.Session - [2d/be3aa9] Submitted process > POREC:to_pairs_file (558) Aug-18 13:41:32.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1469; name: POREC:to_pairs_file (558); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2d/be3aa93fb613a3eccc9ad6cb9dc7e1] Aug-18 13:41:32.509 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:41:32.509 [Task submitter] INFO nextflow.Session - [00/de0d29] Submitted process > POREC:to_pairs_file (559) Aug-18 13:42:46.591 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 346 -- tasks to be submitted are shown below ~> TaskHandler[id: 1471; name: POREC:to_pairs_file (560); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/90ed16320c4e11e274c7f10796f194] ~> TaskHandler[id: 1472; name: POREC:to_pairs_file (561); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/479063ec8501b5a33c756079cd269a] ~> TaskHandler[id: 1473; name: POREC:to_pairs_file (562); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/a1878a8fb4ee3b4c1d8b0be314ca60] ~> TaskHandler[id: 1474; name: POREC:to_pairs_file (563); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e872e2ab65cbed2c524daf75ccfb4c] ~> TaskHandler[id: 1475; name: POREC:to_pairs_file (564); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/ac37ee6147e8ed32464f62b3fb0077] ~> TaskHandler[id: 1476; name: POREC:to_pairs_file (565); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/c141be517e0a7fa1896c3de4f35be1] ~> TaskHandler[id: 1477; name: POREC:to_pairs_file (566); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/0331b3c63d455ac65c224149d64805] ~> TaskHandler[id: 1478; name: POREC:to_pairs_file (567); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/a42642d69f64774bd2d5ed3392898d] ~> TaskHandler[id: 1479; name: POREC:to_pairs_file (568); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/f89428277d4a06e58aa1a566abf8ff] ~> TaskHandler[id: 1480; name: POREC:to_pairs_file (569); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/b825378c23ed7946cdfe22ae38f0af] .. remaining tasks omitted. Aug-18 13:43:05.923 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1470; name: POREC:to_pairs_file (559); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/00/de0d2928ce46d43d675a24a68e3cd8] Aug-18 13:43:05.961 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:43:05.961 [Task submitter] INFO nextflow.Session - [19/90ed16] Submitted process > POREC:to_pairs_file (560) Aug-18 13:43:54.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1471; name: POREC:to_pairs_file (560); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/90ed16320c4e11e274c7f10796f194] Aug-18 13:44:40.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1471; name: POREC:to_pairs_file (560); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/90ed16320c4e11e274c7f10796f194] Aug-18 13:44:40.329 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:44:40.329 [Task submitter] INFO nextflow.Session - [44/479063] Submitted process > POREC:to_pairs_file (561) Aug-18 13:46:15.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1472; name: POREC:to_pairs_file (561); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/479063ec8501b5a33c756079cd269a] Aug-18 13:46:16.007 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:46:16.007 [Task submitter] INFO nextflow.Session - [6b/a1878a] Submitted process > POREC:to_pairs_file (562) Aug-18 13:47:47.110 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 343 -- tasks to be submitted are shown below ~> TaskHandler[id: 1474; name: POREC:to_pairs_file (563); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e872e2ab65cbed2c524daf75ccfb4c] ~> TaskHandler[id: 1475; name: POREC:to_pairs_file (564); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/ac37ee6147e8ed32464f62b3fb0077] ~> TaskHandler[id: 1476; name: POREC:to_pairs_file (565); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/c141be517e0a7fa1896c3de4f35be1] ~> TaskHandler[id: 1477; name: POREC:to_pairs_file (566); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/0331b3c63d455ac65c224149d64805] ~> TaskHandler[id: 1478; name: POREC:to_pairs_file (567); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/a42642d69f64774bd2d5ed3392898d] ~> TaskHandler[id: 1479; name: POREC:to_pairs_file (568); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/f89428277d4a06e58aa1a566abf8ff] ~> TaskHandler[id: 1480; name: POREC:to_pairs_file (569); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/b825378c23ed7946cdfe22ae38f0af] ~> TaskHandler[id: 1481; name: POREC:to_pairs_file (570); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d119a1efb94d60f3104638c661779d] ~> TaskHandler[id: 1482; name: POREC:to_pairs_file (571); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/506c37f82065ddb99b97f289514802] ~> TaskHandler[id: 1483; name: POREC:to_pairs_file (572); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/6dfe90df064da3fee2f08ffdbcec9a] .. remaining tasks omitted. Aug-18 13:47:50.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1473; name: POREC:to_pairs_file (562); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/a1878a8fb4ee3b4c1d8b0be314ca60] Aug-18 13:47:50.497 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:47:50.497 [Task submitter] INFO nextflow.Session - [2f/e872e2] Submitted process > POREC:to_pairs_file (563) Aug-18 13:48:54.225 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1474; name: POREC:to_pairs_file (563); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e872e2ab65cbed2c524daf75ccfb4c] Aug-18 13:49:28.499 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1474; name: POREC:to_pairs_file (563); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/e872e2ab65cbed2c524daf75ccfb4c] Aug-18 13:49:28.542 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:49:28.542 [Task submitter] INFO nextflow.Session - [b9/ac37ee] Submitted process > POREC:to_pairs_file (564) Aug-18 13:51:02.148 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1475; name: POREC:to_pairs_file (564); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/ac37ee6147e8ed32464f62b3fb0077] Aug-18 13:51:02.153 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:51:02.153 [Task submitter] INFO nextflow.Session - [bf/c141be] Submitted process > POREC:to_pairs_file (565) Aug-18 13:52:37.396 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1476; name: POREC:to_pairs_file (565); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/c141be517e0a7fa1896c3de4f35be1] Aug-18 13:52:37.430 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:52:37.430 [Task submitter] INFO nextflow.Session - [a9/0331b3] Submitted process > POREC:to_pairs_file (566) Aug-18 13:52:47.444 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 339 -- tasks to be submitted are shown below ~> TaskHandler[id: 1478; name: POREC:to_pairs_file (567); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/a42642d69f64774bd2d5ed3392898d] ~> TaskHandler[id: 1479; name: POREC:to_pairs_file (568); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/f89428277d4a06e58aa1a566abf8ff] ~> TaskHandler[id: 1480; name: POREC:to_pairs_file (569); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/b825378c23ed7946cdfe22ae38f0af] ~> TaskHandler[id: 1481; name: POREC:to_pairs_file (570); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d119a1efb94d60f3104638c661779d] ~> TaskHandler[id: 1482; name: POREC:to_pairs_file (571); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/506c37f82065ddb99b97f289514802] ~> TaskHandler[id: 1483; name: POREC:to_pairs_file (572); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/6dfe90df064da3fee2f08ffdbcec9a] ~> TaskHandler[id: 1484; name: POREC:to_pairs_file (573); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/a05688ea2e3340eb09273e35a3bb46] ~> TaskHandler[id: 1485; name: POREC:to_pairs_file (574); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/a1a5d596a98b6e5018eda89b0540b7] ~> TaskHandler[id: 1486; name: POREC:to_pairs_file (575); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/a25c63740bdad34385ff7e851ce70c] ~> TaskHandler[id: 1487; name: POREC:to_pairs_file (576); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/bcaf29e1407e047b3384e8078f0eb1] .. remaining tasks omitted. Aug-18 13:53:54.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1477; name: POREC:to_pairs_file (566); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/0331b3c63d455ac65c224149d64805] Aug-18 13:54:11.927 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1477; name: POREC:to_pairs_file (566); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/0331b3c63d455ac65c224149d64805] Aug-18 13:54:11.941 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:54:11.941 [Task submitter] INFO nextflow.Session - [b8/a42642] Submitted process > POREC:to_pairs_file (567) Aug-18 13:55:46.574 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1478; name: POREC:to_pairs_file (567); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b8/a42642d69f64774bd2d5ed3392898d] Aug-18 13:55:46.578 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:55:46.578 [Task submitter] INFO nextflow.Session - [99/f89428] Submitted process > POREC:to_pairs_file (568) Aug-18 13:57:19.531 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1479; name: POREC:to_pairs_file (568); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/f89428277d4a06e58aa1a566abf8ff] Aug-18 13:57:19.537 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:57:19.537 [Task submitter] INFO nextflow.Session - [02/b82537] Submitted process > POREC:to_pairs_file (569) Aug-18 13:57:47.574 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 336 -- tasks to be submitted are shown below ~> TaskHandler[id: 1481; name: POREC:to_pairs_file (570); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d119a1efb94d60f3104638c661779d] ~> TaskHandler[id: 1482; name: POREC:to_pairs_file (571); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/506c37f82065ddb99b97f289514802] ~> TaskHandler[id: 1483; name: POREC:to_pairs_file (572); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/6dfe90df064da3fee2f08ffdbcec9a] ~> TaskHandler[id: 1484; name: POREC:to_pairs_file (573); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/a05688ea2e3340eb09273e35a3bb46] ~> TaskHandler[id: 1485; name: POREC:to_pairs_file (574); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/a1a5d596a98b6e5018eda89b0540b7] ~> TaskHandler[id: 1486; name: POREC:to_pairs_file (575); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/a25c63740bdad34385ff7e851ce70c] ~> TaskHandler[id: 1487; name: POREC:to_pairs_file (576); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/bcaf29e1407e047b3384e8078f0eb1] ~> TaskHandler[id: 1488; name: POREC:to_pairs_file (577); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/f75ec1534d4bb274b9ad8677f7b917] ~> TaskHandler[id: 1489; name: POREC:to_pairs_file (578); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/eb3580c90db9e27b8d009e365a304f] ~> TaskHandler[id: 1490; name: POREC:to_pairs_file (579); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/9386d7ee50c3b67b0021ddf882f33a] .. remaining tasks omitted. Aug-18 13:58:54.083 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1480; name: POREC:to_pairs_file (569); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/b825378c23ed7946cdfe22ae38f0af] Aug-18 13:58:54.116 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 13:58:54.116 [Task submitter] INFO nextflow.Session - [9c/d119a1] Submitted process > POREC:to_pairs_file (570) Aug-18 13:58:54.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1481; name: POREC:to_pairs_file (570); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d119a1efb94d60f3104638c661779d] Aug-18 14:00:29.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1481; name: POREC:to_pairs_file (570); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9c/d119a1efb94d60f3104638c661779d] Aug-18 14:00:29.404 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:00:29.404 [Task submitter] INFO nextflow.Session - [fd/506c37] Submitted process > POREC:to_pairs_file (571) Aug-18 14:02:02.657 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1482; name: POREC:to_pairs_file (571); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/506c37f82065ddb99b97f289514802] Aug-18 14:02:02.706 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:02:02.706 [Task submitter] INFO nextflow.Session - [b9/6dfe90] Submitted process > POREC:to_pairs_file (572) Aug-18 14:02:47.769 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 333 -- tasks to be submitted are shown below ~> TaskHandler[id: 1484; name: POREC:to_pairs_file (573); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/a05688ea2e3340eb09273e35a3bb46] ~> TaskHandler[id: 1485; name: POREC:to_pairs_file (574); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/a1a5d596a98b6e5018eda89b0540b7] ~> TaskHandler[id: 1486; name: POREC:to_pairs_file (575); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/a25c63740bdad34385ff7e851ce70c] ~> TaskHandler[id: 1487; name: POREC:to_pairs_file (576); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/bcaf29e1407e047b3384e8078f0eb1] ~> TaskHandler[id: 1488; name: POREC:to_pairs_file (577); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/f75ec1534d4bb274b9ad8677f7b917] ~> TaskHandler[id: 1489; name: POREC:to_pairs_file (578); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/eb3580c90db9e27b8d009e365a304f] ~> TaskHandler[id: 1490; name: POREC:to_pairs_file (579); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/9386d7ee50c3b67b0021ddf882f33a] ~> TaskHandler[id: 1491; name: POREC:to_pairs_file (580); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/bed50d88755b6ede4c837016ee62f7] ~> TaskHandler[id: 1492; name: POREC:to_pairs_file (581); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/5d63be1e1f51a8685d2cdd2d6d8c67] ~> TaskHandler[id: 1493; name: POREC:to_pairs_file (582); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/595a102d718a06fe9d291da03f3ac1] .. remaining tasks omitted. Aug-18 14:03:35.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1483; name: POREC:to_pairs_file (572); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b9/6dfe90df064da3fee2f08ffdbcec9a] Aug-18 14:03:35.371 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:03:35.371 [Task submitter] INFO nextflow.Session - [a1/a05688] Submitted process > POREC:to_pairs_file (573) Aug-18 14:03:54.419 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1484; name: POREC:to_pairs_file (573); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/a05688ea2e3340eb09273e35a3bb46] Aug-18 14:05:11.154 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1484; name: POREC:to_pairs_file (573); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/a05688ea2e3340eb09273e35a3bb46] Aug-18 14:05:11.193 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:05:11.193 [Task submitter] INFO nextflow.Session - [8c/a1a5d5] Submitted process > POREC:to_pairs_file (574) Aug-18 14:06:45.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1485; name: POREC:to_pairs_file (574); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8c/a1a5d596a98b6e5018eda89b0540b7] Aug-18 14:06:45.750 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:06:45.750 [Task submitter] INFO nextflow.Session - [25/a25c63] Submitted process > POREC:to_pairs_file (575) Aug-18 14:07:47.821 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 330 -- tasks to be submitted are shown below ~> TaskHandler[id: 1487; name: POREC:to_pairs_file (576); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/bcaf29e1407e047b3384e8078f0eb1] ~> TaskHandler[id: 1488; name: POREC:to_pairs_file (577); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/f75ec1534d4bb274b9ad8677f7b917] ~> TaskHandler[id: 1489; name: POREC:to_pairs_file (578); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/eb3580c90db9e27b8d009e365a304f] ~> TaskHandler[id: 1490; name: POREC:to_pairs_file (579); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/9386d7ee50c3b67b0021ddf882f33a] ~> TaskHandler[id: 1491; name: POREC:to_pairs_file (580); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/bed50d88755b6ede4c837016ee62f7] ~> TaskHandler[id: 1492; name: POREC:to_pairs_file (581); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/5d63be1e1f51a8685d2cdd2d6d8c67] ~> TaskHandler[id: 1493; name: POREC:to_pairs_file (582); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/595a102d718a06fe9d291da03f3ac1] ~> TaskHandler[id: 1494; name: POREC:to_pairs_file (583); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/f2f5f90917035b8d86d5f0c5042ba1] ~> TaskHandler[id: 1495; name: POREC:to_pairs_file (584); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/6baa81db5cb93efd5251df274ac8df] ~> TaskHandler[id: 1496; name: POREC:to_pairs_file (585); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/6ae5662ac4ae562cc434d4070828f8] .. remaining tasks omitted. Aug-18 14:08:20.261 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1486; name: POREC:to_pairs_file (575); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/a25c63740bdad34385ff7e851ce70c] Aug-18 14:08:20.301 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:08:20.301 [Task submitter] INFO nextflow.Session - [92/bcaf29] Submitted process > POREC:to_pairs_file (576) Aug-18 14:08:54.461 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1487; name: POREC:to_pairs_file (576); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/bcaf29e1407e047b3384e8078f0eb1] Aug-18 14:09:54.266 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1487; name: POREC:to_pairs_file (576); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/92/bcaf29e1407e047b3384e8078f0eb1] Aug-18 14:09:54.311 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:09:54.311 [Task submitter] INFO nextflow.Session - [cd/f75ec1] Submitted process > POREC:to_pairs_file (577) Aug-18 14:11:28.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1488; name: POREC:to_pairs_file (577); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/f75ec1534d4bb274b9ad8677f7b917] Aug-18 14:11:28.152 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:11:28.152 [Task submitter] INFO nextflow.Session - [55/eb3580] Submitted process > POREC:to_pairs_file (578) Aug-18 14:12:48.269 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 327 -- tasks to be submitted are shown below ~> TaskHandler[id: 1490; name: POREC:to_pairs_file (579); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/9386d7ee50c3b67b0021ddf882f33a] ~> TaskHandler[id: 1491; name: POREC:to_pairs_file (580); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/bed50d88755b6ede4c837016ee62f7] ~> TaskHandler[id: 1492; name: POREC:to_pairs_file (581); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/5d63be1e1f51a8685d2cdd2d6d8c67] ~> TaskHandler[id: 1493; name: POREC:to_pairs_file (582); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/595a102d718a06fe9d291da03f3ac1] ~> TaskHandler[id: 1494; name: POREC:to_pairs_file (583); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/f2f5f90917035b8d86d5f0c5042ba1] ~> TaskHandler[id: 1495; name: POREC:to_pairs_file (584); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/6baa81db5cb93efd5251df274ac8df] ~> TaskHandler[id: 1496; name: POREC:to_pairs_file (585); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/6ae5662ac4ae562cc434d4070828f8] ~> TaskHandler[id: 1497; name: POREC:to_pairs_file (586); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/a486b5fbfa13fc1099ae9b973e4ee0] ~> TaskHandler[id: 1498; name: POREC:to_pairs_file (587); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/0efcf0735313496d20db3f63333f3d] ~> TaskHandler[id: 1499; name: POREC:to_pairs_file (588); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/922ea2720f3b5710465ffd78a471af] .. remaining tasks omitted. Aug-18 14:13:03.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1489; name: POREC:to_pairs_file (578); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/eb3580c90db9e27b8d009e365a304f] Aug-18 14:13:03.235 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:13:03.235 [Task submitter] INFO nextflow.Session - [f8/9386d7] Submitted process > POREC:to_pairs_file (579) Aug-18 14:13:54.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1490; name: POREC:to_pairs_file (579); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/9386d7ee50c3b67b0021ddf882f33a] Aug-18 14:14:38.925 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1490; name: POREC:to_pairs_file (579); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/9386d7ee50c3b67b0021ddf882f33a] Aug-18 14:14:38.969 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:14:38.969 [Task submitter] INFO nextflow.Session - [b1/bed50d] Submitted process > POREC:to_pairs_file (580) Aug-18 14:16:12.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1491; name: POREC:to_pairs_file (580); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b1/bed50d88755b6ede4c837016ee62f7] Aug-18 14:16:12.380 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:16:12.380 [Task submitter] INFO nextflow.Session - [f8/5d63be] Submitted process > POREC:to_pairs_file (581) Aug-18 14:17:45.403 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1492; name: POREC:to_pairs_file (581); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f8/5d63be1e1f51a8685d2cdd2d6d8c67] Aug-18 14:17:45.441 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:17:45.441 [Task submitter] INFO nextflow.Session - [b6/595a10] Submitted process > POREC:to_pairs_file (582) Aug-18 14:17:48.450 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 323 -- tasks to be submitted are shown below ~> TaskHandler[id: 1494; name: POREC:to_pairs_file (583); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/f2f5f90917035b8d86d5f0c5042ba1] ~> TaskHandler[id: 1495; name: POREC:to_pairs_file (584); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/6baa81db5cb93efd5251df274ac8df] ~> TaskHandler[id: 1496; name: POREC:to_pairs_file (585); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/6ae5662ac4ae562cc434d4070828f8] ~> TaskHandler[id: 1497; name: POREC:to_pairs_file (586); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/a486b5fbfa13fc1099ae9b973e4ee0] ~> TaskHandler[id: 1498; name: POREC:to_pairs_file (587); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/0efcf0735313496d20db3f63333f3d] ~> TaskHandler[id: 1499; name: POREC:to_pairs_file (588); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/922ea2720f3b5710465ffd78a471af] ~> TaskHandler[id: 1500; name: POREC:to_pairs_file (589); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d82634b0dc870cd5bff999c154112f] ~> TaskHandler[id: 1501; name: POREC:to_pairs_file (590); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/36f97a692de2f0815c28a22812123e] ~> TaskHandler[id: 1502; name: POREC:to_pairs_file (591); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/db28180b485059840a447c5a0f2e45] ~> TaskHandler[id: 1503; name: POREC:to_pairs_file (592); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/e2ab9c26bcfeefc4e18683e275ee2b] .. remaining tasks omitted. Aug-18 14:18:54.623 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1493; name: POREC:to_pairs_file (582); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/595a102d718a06fe9d291da03f3ac1] Aug-18 14:19:21.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1493; name: POREC:to_pairs_file (582); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/595a102d718a06fe9d291da03f3ac1] Aug-18 14:19:21.257 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:19:21.257 [Task submitter] INFO nextflow.Session - [d3/f2f5f9] Submitted process > POREC:to_pairs_file (583) Aug-18 14:20:57.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1494; name: POREC:to_pairs_file (583); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/f2f5f90917035b8d86d5f0c5042ba1] Aug-18 14:20:57.195 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:20:57.195 [Task submitter] INFO nextflow.Session - [1f/6baa81] Submitted process > POREC:to_pairs_file (584) Aug-18 14:22:32.262 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1495; name: POREC:to_pairs_file (584); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/6baa81db5cb93efd5251df274ac8df] Aug-18 14:22:32.267 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:22:32.267 [Task submitter] INFO nextflow.Session - [e0/6ae566] Submitted process > POREC:to_pairs_file (585) Aug-18 14:22:49.296 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 320 -- tasks to be submitted are shown below ~> TaskHandler[id: 1497; name: POREC:to_pairs_file (586); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/a486b5fbfa13fc1099ae9b973e4ee0] ~> TaskHandler[id: 1498; name: POREC:to_pairs_file (587); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/0efcf0735313496d20db3f63333f3d] ~> TaskHandler[id: 1499; name: POREC:to_pairs_file (588); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/922ea2720f3b5710465ffd78a471af] ~> TaskHandler[id: 1500; name: POREC:to_pairs_file (589); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d82634b0dc870cd5bff999c154112f] ~> TaskHandler[id: 1501; name: POREC:to_pairs_file (590); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/36f97a692de2f0815c28a22812123e] ~> TaskHandler[id: 1502; name: POREC:to_pairs_file (591); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/db28180b485059840a447c5a0f2e45] ~> TaskHandler[id: 1503; name: POREC:to_pairs_file (592); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/e2ab9c26bcfeefc4e18683e275ee2b] ~> TaskHandler[id: 1504; name: POREC:to_pairs_file (593); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e2d71b25094b380a0a54718fe2309f] ~> TaskHandler[id: 1505; name: POREC:to_pairs_file (594); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/005b380eed26e1849f5a346f5dcc81] ~> TaskHandler[id: 1506; name: POREC:to_pairs_file (595); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/4b6724da4de66082a73e0b48bd7378] .. remaining tasks omitted. Aug-18 14:23:54.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1496; name: POREC:to_pairs_file (585); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/6ae5662ac4ae562cc434d4070828f8] Aug-18 14:24:06.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1496; name: POREC:to_pairs_file (585); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/6ae5662ac4ae562cc434d4070828f8] Aug-18 14:24:06.585 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:24:06.585 [Task submitter] INFO nextflow.Session - [44/a486b5] Submitted process > POREC:to_pairs_file (586) Aug-18 14:25:42.563 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1497; name: POREC:to_pairs_file (586); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/a486b5fbfa13fc1099ae9b973e4ee0] Aug-18 14:25:42.575 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:25:42.575 [Task submitter] INFO nextflow.Session - [da/0efcf0] Submitted process > POREC:to_pairs_file (587) Aug-18 14:27:17.358 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1498; name: POREC:to_pairs_file (587); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/0efcf0735313496d20db3f63333f3d] Aug-18 14:27:17.397 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:27:17.398 [Task submitter] INFO nextflow.Session - [19/922ea2] Submitted process > POREC:to_pairs_file (588) Aug-18 14:27:49.437 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 317 -- tasks to be submitted are shown below ~> TaskHandler[id: 1500; name: POREC:to_pairs_file (589); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d82634b0dc870cd5bff999c154112f] ~> TaskHandler[id: 1501; name: POREC:to_pairs_file (590); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/36f97a692de2f0815c28a22812123e] ~> TaskHandler[id: 1502; name: POREC:to_pairs_file (591); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/db28180b485059840a447c5a0f2e45] ~> TaskHandler[id: 1503; name: POREC:to_pairs_file (592); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/e2ab9c26bcfeefc4e18683e275ee2b] ~> TaskHandler[id: 1504; name: POREC:to_pairs_file (593); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e2d71b25094b380a0a54718fe2309f] ~> TaskHandler[id: 1505; name: POREC:to_pairs_file (594); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/005b380eed26e1849f5a346f5dcc81] ~> TaskHandler[id: 1506; name: POREC:to_pairs_file (595); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/4b6724da4de66082a73e0b48bd7378] ~> TaskHandler[id: 1507; name: POREC:to_pairs_file (596); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/44b408de71c068f0b6e0aefdc80c8a] ~> TaskHandler[id: 1508; name: POREC:to_pairs_file (597); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/7851f11b7e7eeb0d1539f35dc21ab6] ~> TaskHandler[id: 1509; name: POREC:to_pairs_file (598); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/5e16aa5f6a6aae3fde23a77a1d7545] .. remaining tasks omitted. Aug-18 14:28:51.261 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1499; name: POREC:to_pairs_file (588); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/19/922ea2720f3b5710465ffd78a471af] Aug-18 14:28:51.270 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:28:51.271 [Task submitter] INFO nextflow.Session - [88/d82634] Submitted process > POREC:to_pairs_file (589) Aug-18 14:28:54.715 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1500; name: POREC:to_pairs_file (589); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d82634b0dc870cd5bff999c154112f] Aug-18 14:30:30.758 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1500; name: POREC:to_pairs_file (589); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d82634b0dc870cd5bff999c154112f] Aug-18 14:30:30.782 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:30:30.782 [Task submitter] INFO nextflow.Session - [d8/36f97a] Submitted process > POREC:to_pairs_file (590) Aug-18 14:32:04.564 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1501; name: POREC:to_pairs_file (590); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d8/36f97a692de2f0815c28a22812123e] Aug-18 14:32:04.568 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:32:04.568 [Task submitter] INFO nextflow.Session - [81/db2818] Submitted process > POREC:to_pairs_file (591) Aug-18 14:32:49.644 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 314 -- tasks to be submitted are shown below ~> TaskHandler[id: 1503; name: POREC:to_pairs_file (592); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/e2ab9c26bcfeefc4e18683e275ee2b] ~> TaskHandler[id: 1504; name: POREC:to_pairs_file (593); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e2d71b25094b380a0a54718fe2309f] ~> TaskHandler[id: 1505; name: POREC:to_pairs_file (594); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/005b380eed26e1849f5a346f5dcc81] ~> TaskHandler[id: 1506; name: POREC:to_pairs_file (595); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/4b6724da4de66082a73e0b48bd7378] ~> TaskHandler[id: 1507; name: POREC:to_pairs_file (596); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/44b408de71c068f0b6e0aefdc80c8a] ~> TaskHandler[id: 1508; name: POREC:to_pairs_file (597); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/7851f11b7e7eeb0d1539f35dc21ab6] ~> TaskHandler[id: 1509; name: POREC:to_pairs_file (598); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/5e16aa5f6a6aae3fde23a77a1d7545] ~> TaskHandler[id: 1510; name: POREC:to_pairs_file (599); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/05d342e69e3060b8ccc63c8521e04e] ~> TaskHandler[id: 1511; name: POREC:to_pairs_file (600); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/ec018926fa4df889d2f1754fcc0d00] ~> TaskHandler[id: 1512; name: POREC:to_pairs_file (601); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/e71f18bf2071bdfc1c8fde13fc0841] .. remaining tasks omitted. Aug-18 14:33:38.235 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1502; name: POREC:to_pairs_file (591); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/81/db28180b485059840a447c5a0f2e45] Aug-18 14:33:38.282 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:33:38.282 [Task submitter] INFO nextflow.Session - [c4/e2ab9c] Submitted process > POREC:to_pairs_file (592) Aug-18 14:33:54.765 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1503; name: POREC:to_pairs_file (592); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/e2ab9c26bcfeefc4e18683e275ee2b] Aug-18 14:35:12.983 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1503; name: POREC:to_pairs_file (592); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/e2ab9c26bcfeefc4e18683e275ee2b] Aug-18 14:35:13.019 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:35:13.019 [Task submitter] INFO nextflow.Session - [01/e2d71b] Submitted process > POREC:to_pairs_file (593) Aug-18 14:36:47.528 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1504; name: POREC:to_pairs_file (593); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/01/e2d71b25094b380a0a54718fe2309f] Aug-18 14:36:47.567 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:36:47.567 [Task submitter] INFO nextflow.Session - [11/005b38] Submitted process > POREC:to_pairs_file (594) Aug-18 14:37:50.643 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 311 -- tasks to be submitted are shown below ~> TaskHandler[id: 1506; name: POREC:to_pairs_file (595); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/4b6724da4de66082a73e0b48bd7378] ~> TaskHandler[id: 1507; name: POREC:to_pairs_file (596); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/44b408de71c068f0b6e0aefdc80c8a] ~> TaskHandler[id: 1508; name: POREC:to_pairs_file (597); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/7851f11b7e7eeb0d1539f35dc21ab6] ~> TaskHandler[id: 1509; name: POREC:to_pairs_file (598); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/5e16aa5f6a6aae3fde23a77a1d7545] ~> TaskHandler[id: 1510; name: POREC:to_pairs_file (599); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/05d342e69e3060b8ccc63c8521e04e] ~> TaskHandler[id: 1511; name: POREC:to_pairs_file (600); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/ec018926fa4df889d2f1754fcc0d00] ~> TaskHandler[id: 1512; name: POREC:to_pairs_file (601); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/e71f18bf2071bdfc1c8fde13fc0841] ~> TaskHandler[id: 1513; name: POREC:to_pairs_file (602); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/659e476b14189e6a1ebea358bb24fd] ~> TaskHandler[id: 1514; name: POREC:to_pairs_file (603); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/7780c4778785f7ebcc4bbfa40737dc] ~> TaskHandler[id: 1515; name: POREC:to_pairs_file (604); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/036b22eacff482bb22c17c3b37ab14] .. remaining tasks omitted. Aug-18 14:38:21.766 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1505; name: POREC:to_pairs_file (594); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/005b380eed26e1849f5a346f5dcc81] Aug-18 14:38:21.771 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:38:21.772 [Task submitter] INFO nextflow.Session - [f0/4b6724] Submitted process > POREC:to_pairs_file (595) Aug-18 14:38:54.806 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1506; name: POREC:to_pairs_file (595); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/4b6724da4de66082a73e0b48bd7378] Aug-18 14:39:55.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1506; name: POREC:to_pairs_file (595); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f0/4b6724da4de66082a73e0b48bd7378] Aug-18 14:39:55.516 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:39:55.516 [Task submitter] INFO nextflow.Session - [94/44b408] Submitted process > POREC:to_pairs_file (596) Aug-18 14:41:28.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1507; name: POREC:to_pairs_file (596); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/44b408de71c068f0b6e0aefdc80c8a] Aug-18 14:41:28.879 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:41:28.879 [Task submitter] INFO nextflow.Session - [bb/7851f1] Submitted process > POREC:to_pairs_file (597) Aug-18 14:42:50.984 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 308 -- tasks to be submitted are shown below ~> TaskHandler[id: 1509; name: POREC:to_pairs_file (598); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/5e16aa5f6a6aae3fde23a77a1d7545] ~> TaskHandler[id: 1510; name: POREC:to_pairs_file (599); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/05d342e69e3060b8ccc63c8521e04e] ~> TaskHandler[id: 1511; name: POREC:to_pairs_file (600); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/ec018926fa4df889d2f1754fcc0d00] ~> TaskHandler[id: 1512; name: POREC:to_pairs_file (601); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/e71f18bf2071bdfc1c8fde13fc0841] ~> TaskHandler[id: 1513; name: POREC:to_pairs_file (602); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/659e476b14189e6a1ebea358bb24fd] ~> TaskHandler[id: 1514; name: POREC:to_pairs_file (603); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/7780c4778785f7ebcc4bbfa40737dc] ~> TaskHandler[id: 1515; name: POREC:to_pairs_file (604); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/036b22eacff482bb22c17c3b37ab14] ~> TaskHandler[id: 1516; name: POREC:to_pairs_file (605); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/2c3beecc924799d4006bd93908da86] ~> TaskHandler[id: 1517; name: POREC:to_pairs_file (606); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/2bac06c409aba77afd5462ac804a2f] ~> TaskHandler[id: 1518; name: POREC:to_pairs_file (607); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/9bcc68eaaed55db398c187d134da25] .. remaining tasks omitted. Aug-18 14:43:03.490 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1508; name: POREC:to_pairs_file (597); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/7851f11b7e7eeb0d1539f35dc21ab6] Aug-18 14:43:03.541 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:43:03.541 [Task submitter] INFO nextflow.Session - [f7/5e16aa] Submitted process > POREC:to_pairs_file (598) Aug-18 14:43:54.828 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1509; name: POREC:to_pairs_file (598); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/5e16aa5f6a6aae3fde23a77a1d7545] Aug-18 14:44:36.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1509; name: POREC:to_pairs_file (598); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/5e16aa5f6a6aae3fde23a77a1d7545] Aug-18 14:44:36.044 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:44:36.045 [Task submitter] INFO nextflow.Session - [06/05d342] Submitted process > POREC:to_pairs_file (599) Aug-18 14:46:12.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1510; name: POREC:to_pairs_file (599); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/05d342e69e3060b8ccc63c8521e04e] Aug-18 14:46:12.469 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:46:12.469 [Task submitter] INFO nextflow.Session - [64/ec0189] Submitted process > POREC:to_pairs_file (600) Aug-18 14:47:46.382 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1511; name: POREC:to_pairs_file (600); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/64/ec018926fa4df889d2f1754fcc0d00] Aug-18 14:47:46.399 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:47:46.399 [Task submitter] INFO nextflow.Session - [44/e71f18] Submitted process > POREC:to_pairs_file (601) Aug-18 14:47:51.407 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 304 -- tasks to be submitted are shown below ~> TaskHandler[id: 1513; name: POREC:to_pairs_file (602); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/659e476b14189e6a1ebea358bb24fd] ~> TaskHandler[id: 1514; name: POREC:to_pairs_file (603); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/7780c4778785f7ebcc4bbfa40737dc] ~> TaskHandler[id: 1515; name: POREC:to_pairs_file (604); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/036b22eacff482bb22c17c3b37ab14] ~> TaskHandler[id: 1516; name: POREC:to_pairs_file (605); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/2c3beecc924799d4006bd93908da86] ~> TaskHandler[id: 1517; name: POREC:to_pairs_file (606); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/2bac06c409aba77afd5462ac804a2f] ~> TaskHandler[id: 1518; name: POREC:to_pairs_file (607); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/9bcc68eaaed55db398c187d134da25] ~> TaskHandler[id: 1519; name: POREC:to_pairs_file (608); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/4abbd0a8fc7d21319a9279cdca695c] ~> TaskHandler[id: 1520; name: POREC:to_pairs_file (609); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c8456eab6be711d004109aa5207b4d] ~> TaskHandler[id: 1521; name: POREC:to_pairs_file (610); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/2ab0182777f38b56bc339a6bf33ec7] ~> TaskHandler[id: 1522; name: POREC:to_pairs_file (611); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/4049ea1ac36d09cb3015611f3830a9] .. remaining tasks omitted. Aug-18 14:48:54.878 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1512; name: POREC:to_pairs_file (601); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/e71f18bf2071bdfc1c8fde13fc0841] Aug-18 14:49:20.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1512; name: POREC:to_pairs_file (601); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/e71f18bf2071bdfc1c8fde13fc0841] Aug-18 14:49:20.355 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:49:20.356 [Task submitter] INFO nextflow.Session - [5c/659e47] Submitted process > POREC:to_pairs_file (602) Aug-18 14:51:08.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1513; name: POREC:to_pairs_file (602); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/659e476b14189e6a1ebea358bb24fd] Aug-18 14:51:08.926 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:51:08.926 [Task submitter] INFO nextflow.Session - [30/7780c4] Submitted process > POREC:to_pairs_file (603) Aug-18 14:52:52.024 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 302 -- tasks to be submitted are shown below ~> TaskHandler[id: 1515; name: POREC:to_pairs_file (604); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/036b22eacff482bb22c17c3b37ab14] ~> TaskHandler[id: 1516; name: POREC:to_pairs_file (605); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/2c3beecc924799d4006bd93908da86] ~> TaskHandler[id: 1517; name: POREC:to_pairs_file (606); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/2bac06c409aba77afd5462ac804a2f] ~> TaskHandler[id: 1518; name: POREC:to_pairs_file (607); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/9bcc68eaaed55db398c187d134da25] ~> TaskHandler[id: 1519; name: POREC:to_pairs_file (608); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/4abbd0a8fc7d21319a9279cdca695c] ~> TaskHandler[id: 1520; name: POREC:to_pairs_file (609); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c8456eab6be711d004109aa5207b4d] ~> TaskHandler[id: 1521; name: POREC:to_pairs_file (610); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/2ab0182777f38b56bc339a6bf33ec7] ~> TaskHandler[id: 1522; name: POREC:to_pairs_file (611); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/4049ea1ac36d09cb3015611f3830a9] ~> TaskHandler[id: 1523; name: POREC:to_pairs_file (612); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/aaf51b1b03d1d098da62a616e4a341] ~> TaskHandler[id: 1524; name: POREC:to_pairs_file (613); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/1512c77ff3f5862ad79635c93972fa] .. remaining tasks omitted. Aug-18 14:53:19.104 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1514; name: POREC:to_pairs_file (603); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/7780c4778785f7ebcc4bbfa40737dc] Aug-18 14:53:19.111 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:53:19.112 [Task submitter] INFO nextflow.Session - [80/036b22] Submitted process > POREC:to_pairs_file (604) Aug-18 14:53:54.887 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1515; name: POREC:to_pairs_file (604); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/036b22eacff482bb22c17c3b37ab14] Aug-18 14:57:21.563 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1515; name: POREC:to_pairs_file (604); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/80/036b22eacff482bb22c17c3b37ab14] Aug-18 14:57:21.570 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 14:57:21.570 [Task submitter] INFO nextflow.Session - [8f/2c3bee] Submitted process > POREC:to_pairs_file (605) Aug-18 14:57:52.609 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 300 -- tasks to be submitted are shown below ~> TaskHandler[id: 1517; name: POREC:to_pairs_file (606); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/2bac06c409aba77afd5462ac804a2f] ~> TaskHandler[id: 1518; name: POREC:to_pairs_file (607); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/9bcc68eaaed55db398c187d134da25] ~> TaskHandler[id: 1519; name: POREC:to_pairs_file (608); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/4abbd0a8fc7d21319a9279cdca695c] ~> TaskHandler[id: 1520; name: POREC:to_pairs_file (609); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c8456eab6be711d004109aa5207b4d] ~> TaskHandler[id: 1521; name: POREC:to_pairs_file (610); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/2ab0182777f38b56bc339a6bf33ec7] ~> TaskHandler[id: 1522; name: POREC:to_pairs_file (611); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/4049ea1ac36d09cb3015611f3830a9] ~> TaskHandler[id: 1523; name: POREC:to_pairs_file (612); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/aaf51b1b03d1d098da62a616e4a341] ~> TaskHandler[id: 1524; name: POREC:to_pairs_file (613); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/1512c77ff3f5862ad79635c93972fa] ~> TaskHandler[id: 1525; name: POREC:to_pairs_file (614); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/62b230707184b2f608de912910ee4f] ~> TaskHandler[id: 1526; name: POREC:to_pairs_file (615); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7dc0ee65f642eb79af1e6d0d482d35] .. remaining tasks omitted. Aug-18 14:58:54.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1516; name: POREC:to_pairs_file (605); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/2c3beecc924799d4006bd93908da86] Aug-18 15:01:40.384 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1516; name: POREC:to_pairs_file (605); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8f/2c3beecc924799d4006bd93908da86] Aug-18 15:02:19.183 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:02:19.184 [Task submitter] INFO nextflow.Session - [cb/2bac06] Submitted process > POREC:to_pairs_file (606) Aug-18 15:02:53.225 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 299 -- tasks to be submitted are shown below ~> TaskHandler[id: 1518; name: POREC:to_pairs_file (607); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/9bcc68eaaed55db398c187d134da25] ~> TaskHandler[id: 1519; name: POREC:to_pairs_file (608); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/4abbd0a8fc7d21319a9279cdca695c] ~> TaskHandler[id: 1520; name: POREC:to_pairs_file (609); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c8456eab6be711d004109aa5207b4d] ~> TaskHandler[id: 1521; name: POREC:to_pairs_file (610); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/2ab0182777f38b56bc339a6bf33ec7] ~> TaskHandler[id: 1522; name: POREC:to_pairs_file (611); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/4049ea1ac36d09cb3015611f3830a9] ~> TaskHandler[id: 1523; name: POREC:to_pairs_file (612); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/aaf51b1b03d1d098da62a616e4a341] ~> TaskHandler[id: 1524; name: POREC:to_pairs_file (613); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/1512c77ff3f5862ad79635c93972fa] ~> TaskHandler[id: 1525; name: POREC:to_pairs_file (614); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/62b230707184b2f608de912910ee4f] ~> TaskHandler[id: 1526; name: POREC:to_pairs_file (615); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7dc0ee65f642eb79af1e6d0d482d35] ~> TaskHandler[id: 1527; name: POREC:to_pairs_file (616); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/34b4a44ab22dfafde24397fed03839] .. remaining tasks omitted. Aug-18 15:03:53.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1517; name: POREC:to_pairs_file (606); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/2bac06c409aba77afd5462ac804a2f] Aug-18 15:03:53.406 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:03:53.407 [Task submitter] INFO nextflow.Session - [1d/9bcc68] Submitted process > POREC:to_pairs_file (607) Aug-18 15:03:54.901 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1518; name: POREC:to_pairs_file (607); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/9bcc68eaaed55db398c187d134da25] Aug-18 15:05:27.118 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1518; name: POREC:to_pairs_file (607); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/9bcc68eaaed55db398c187d134da25] Aug-18 15:05:27.122 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:05:27.123 [Task submitter] INFO nextflow.Session - [50/4abbd0] Submitted process > POREC:to_pairs_file (608) Aug-18 15:07:01.009 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1519; name: POREC:to_pairs_file (608); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/50/4abbd0a8fc7d21319a9279cdca695c] Aug-18 15:07:01.044 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:07:01.044 [Task submitter] INFO nextflow.Session - [c4/c8456e] Submitted process > POREC:to_pairs_file (609) Aug-18 15:07:54.106 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 296 -- tasks to be submitted are shown below ~> TaskHandler[id: 1521; name: POREC:to_pairs_file (610); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/2ab0182777f38b56bc339a6bf33ec7] ~> TaskHandler[id: 1522; name: POREC:to_pairs_file (611); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/4049ea1ac36d09cb3015611f3830a9] ~> TaskHandler[id: 1523; name: POREC:to_pairs_file (612); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/aaf51b1b03d1d098da62a616e4a341] ~> TaskHandler[id: 1524; name: POREC:to_pairs_file (613); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/1512c77ff3f5862ad79635c93972fa] ~> TaskHandler[id: 1525; name: POREC:to_pairs_file (614); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/62b230707184b2f608de912910ee4f] ~> TaskHandler[id: 1526; name: POREC:to_pairs_file (615); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7dc0ee65f642eb79af1e6d0d482d35] ~> TaskHandler[id: 1527; name: POREC:to_pairs_file (616); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/34b4a44ab22dfafde24397fed03839] ~> TaskHandler[id: 1528; name: POREC:to_pairs_file (617); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/62335e3738a434c6166ddbda146742] ~> TaskHandler[id: 1529; name: POREC:to_pairs_file (618); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/5186f5c571444c2210c3e6375d2d09] ~> TaskHandler[id: 1530; name: POREC:to_pairs_file (619); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/291f5a5dc4ae2ed378e583f3a7b170] .. remaining tasks omitted. Aug-18 15:08:37.615 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1520; name: POREC:to_pairs_file (609); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/c8456eab6be711d004109aa5207b4d] Aug-18 15:08:37.667 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:08:37.667 [Task submitter] INFO nextflow.Session - [bd/2ab018] Submitted process > POREC:to_pairs_file (610) Aug-18 15:08:54.969 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1521; name: POREC:to_pairs_file (610); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/2ab0182777f38b56bc339a6bf33ec7] Aug-18 15:10:12.248 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1521; name: POREC:to_pairs_file (610); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/2ab0182777f38b56bc339a6bf33ec7] Aug-18 15:10:12.291 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:10:12.291 [Task submitter] INFO nextflow.Session - [bb/4049ea] Submitted process > POREC:to_pairs_file (611) Aug-18 15:11:47.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1522; name: POREC:to_pairs_file (611); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/4049ea1ac36d09cb3015611f3830a9] Aug-18 15:11:47.966 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:11:47.966 [Task submitter] INFO nextflow.Session - [26/aaf51b] Submitted process > POREC:to_pairs_file (612) Aug-18 15:12:54.131 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 293 -- tasks to be submitted are shown below ~> TaskHandler[id: 1524; name: POREC:to_pairs_file (613); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/1512c77ff3f5862ad79635c93972fa] ~> TaskHandler[id: 1525; name: POREC:to_pairs_file (614); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/62b230707184b2f608de912910ee4f] ~> TaskHandler[id: 1526; name: POREC:to_pairs_file (615); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7dc0ee65f642eb79af1e6d0d482d35] ~> TaskHandler[id: 1527; name: POREC:to_pairs_file (616); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/34b4a44ab22dfafde24397fed03839] ~> TaskHandler[id: 1528; name: POREC:to_pairs_file (617); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/62335e3738a434c6166ddbda146742] ~> TaskHandler[id: 1529; name: POREC:to_pairs_file (618); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/5186f5c571444c2210c3e6375d2d09] ~> TaskHandler[id: 1530; name: POREC:to_pairs_file (619); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/291f5a5dc4ae2ed378e583f3a7b170] ~> TaskHandler[id: 1531; name: POREC:to_pairs_file (620); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/db97927e9c6c6a7c1e7257bc57b34f] ~> TaskHandler[id: 1532; name: POREC:to_pairs_file (621); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a7968fd7b4e5a911af4b6c388c2390] ~> TaskHandler[id: 1533; name: POREC:to_pairs_file (622); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/0b69b1fa22dae6300360f94326b7fe] .. remaining tasks omitted. Aug-18 15:13:22.416 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1523; name: POREC:to_pairs_file (612); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/aaf51b1b03d1d098da62a616e4a341] Aug-18 15:13:22.454 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:13:22.454 [Task submitter] INFO nextflow.Session - [bf/1512c7] Submitted process > POREC:to_pairs_file (613) Aug-18 15:13:54.973 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1524; name: POREC:to_pairs_file (613); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/1512c77ff3f5862ad79635c93972fa] Aug-18 15:14:58.146 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1524; name: POREC:to_pairs_file (613); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/1512c77ff3f5862ad79635c93972fa] Aug-18 15:14:58.152 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:14:58.152 [Task submitter] INFO nextflow.Session - [26/62b230] Submitted process > POREC:to_pairs_file (614) Aug-18 15:16:31.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1525; name: POREC:to_pairs_file (614); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/62b230707184b2f608de912910ee4f] Aug-18 15:16:31.709 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:16:31.709 [Task submitter] INFO nextflow.Session - [bf/7dc0ee] Submitted process > POREC:to_pairs_file (615) Aug-18 15:17:54.800 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 290 -- tasks to be submitted are shown below ~> TaskHandler[id: 1527; name: POREC:to_pairs_file (616); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/34b4a44ab22dfafde24397fed03839] ~> TaskHandler[id: 1528; name: POREC:to_pairs_file (617); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/62335e3738a434c6166ddbda146742] ~> TaskHandler[id: 1529; name: POREC:to_pairs_file (618); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/5186f5c571444c2210c3e6375d2d09] ~> TaskHandler[id: 1530; name: POREC:to_pairs_file (619); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/291f5a5dc4ae2ed378e583f3a7b170] ~> TaskHandler[id: 1531; name: POREC:to_pairs_file (620); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/db97927e9c6c6a7c1e7257bc57b34f] ~> TaskHandler[id: 1532; name: POREC:to_pairs_file (621); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a7968fd7b4e5a911af4b6c388c2390] ~> TaskHandler[id: 1533; name: POREC:to_pairs_file (622); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/0b69b1fa22dae6300360f94326b7fe] ~> TaskHandler[id: 1534; name: POREC:to_pairs_file (623); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/37c4ac87d981ba6976e0b2694ce0c0] ~> TaskHandler[id: 1535; name: POREC:to_pairs_file (624); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c349131e6606b8429e83c3aff8cb9b] ~> TaskHandler[id: 1536; name: POREC:to_pairs_file (625); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/cb2de853433d784c34cbeda0069486] .. remaining tasks omitted. Aug-18 15:18:05.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1526; name: POREC:to_pairs_file (615); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/7dc0ee65f642eb79af1e6d0d482d35] Aug-18 15:18:05.708 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:18:05.708 [Task submitter] INFO nextflow.Session - [73/34b4a4] Submitted process > POREC:to_pairs_file (616) Aug-18 15:18:55.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1527; name: POREC:to_pairs_file (616); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/34b4a44ab22dfafde24397fed03839] Aug-18 15:19:40.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1527; name: POREC:to_pairs_file (616); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/34b4a44ab22dfafde24397fed03839] Aug-18 15:19:40.716 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:19:40.716 [Task submitter] INFO nextflow.Session - [1c/62335e] Submitted process > POREC:to_pairs_file (617) Aug-18 15:21:14.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1528; name: POREC:to_pairs_file (617); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/62335e3738a434c6166ddbda146742] Aug-18 15:21:14.970 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:21:14.970 [Task submitter] INFO nextflow.Session - [1e/5186f5] Submitted process > POREC:to_pairs_file (618) Aug-18 15:22:49.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1529; name: POREC:to_pairs_file (618); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/5186f5c571444c2210c3e6375d2d09] Aug-18 15:22:49.240 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:22:49.240 [Task submitter] INFO nextflow.Session - [96/291f5a] Submitted process > POREC:to_pairs_file (619) Aug-18 15:22:55.252 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 286 -- tasks to be submitted are shown below ~> TaskHandler[id: 1531; name: POREC:to_pairs_file (620); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/db97927e9c6c6a7c1e7257bc57b34f] ~> TaskHandler[id: 1532; name: POREC:to_pairs_file (621); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a7968fd7b4e5a911af4b6c388c2390] ~> TaskHandler[id: 1533; name: POREC:to_pairs_file (622); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/0b69b1fa22dae6300360f94326b7fe] ~> TaskHandler[id: 1534; name: POREC:to_pairs_file (623); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/37c4ac87d981ba6976e0b2694ce0c0] ~> TaskHandler[id: 1535; name: POREC:to_pairs_file (624); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c349131e6606b8429e83c3aff8cb9b] ~> TaskHandler[id: 1536; name: POREC:to_pairs_file (625); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/cb2de853433d784c34cbeda0069486] ~> TaskHandler[id: 1537; name: POREC:to_pairs_file (626); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/82806dcd7313967b7f04b519b9923c] ~> TaskHandler[id: 1538; name: POREC:to_pairs_file (627); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/fbf614cdd9c370cb411d158d9857e6] ~> TaskHandler[id: 1539; name: POREC:to_pairs_file (628); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/7dcc2865597cf4ad3e4b6a7fcca3b8] ~> TaskHandler[id: 1540; name: POREC:to_pairs_file (629); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/163184652aafec9141d5b25830fb5b] .. remaining tasks omitted. Aug-18 15:23:55.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1530; name: POREC:to_pairs_file (619); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/291f5a5dc4ae2ed378e583f3a7b170] Aug-18 15:24:23.445 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1530; name: POREC:to_pairs_file (619); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/96/291f5a5dc4ae2ed378e583f3a7b170] Aug-18 15:24:23.504 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:24:23.504 [Task submitter] INFO nextflow.Session - [b7/db9792] Submitted process > POREC:to_pairs_file (620) Aug-18 15:25:58.041 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1531; name: POREC:to_pairs_file (620); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/db97927e9c6c6a7c1e7257bc57b34f] Aug-18 15:25:58.079 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:25:58.079 [Task submitter] INFO nextflow.Session - [3f/a7968f] Submitted process > POREC:to_pairs_file (621) Aug-18 15:27:32.826 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1532; name: POREC:to_pairs_file (621); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3f/a7968fd7b4e5a911af4b6c388c2390] Aug-18 15:27:32.878 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:27:32.878 [Task submitter] INFO nextflow.Session - [b6/0b69b1] Submitted process > POREC:to_pairs_file (622) Aug-18 15:27:55.901 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 283 -- tasks to be submitted are shown below ~> TaskHandler[id: 1534; name: POREC:to_pairs_file (623); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/37c4ac87d981ba6976e0b2694ce0c0] ~> TaskHandler[id: 1535; name: POREC:to_pairs_file (624); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c349131e6606b8429e83c3aff8cb9b] ~> TaskHandler[id: 1536; name: POREC:to_pairs_file (625); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/cb2de853433d784c34cbeda0069486] ~> TaskHandler[id: 1537; name: POREC:to_pairs_file (626); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/82806dcd7313967b7f04b519b9923c] ~> TaskHandler[id: 1538; name: POREC:to_pairs_file (627); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/fbf614cdd9c370cb411d158d9857e6] ~> TaskHandler[id: 1539; name: POREC:to_pairs_file (628); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/7dcc2865597cf4ad3e4b6a7fcca3b8] ~> TaskHandler[id: 1540; name: POREC:to_pairs_file (629); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/163184652aafec9141d5b25830fb5b] ~> TaskHandler[id: 1541; name: POREC:to_pairs_file (630); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/f0e86dbce9728142aed457ef207faa] ~> TaskHandler[id: 1542; name: POREC:to_pairs_file (631); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/dbd15b46a8810d3e45dca1268222e9] ~> TaskHandler[id: 1543; name: POREC:to_pairs_file (632); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/bfddb50d0cde668c0ece40360aea85] .. remaining tasks omitted. Aug-18 15:28:55.166 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1533; name: POREC:to_pairs_file (622); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/0b69b1fa22dae6300360f94326b7fe] Aug-18 15:29:06.971 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1533; name: POREC:to_pairs_file (622); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/0b69b1fa22dae6300360f94326b7fe] Aug-18 15:29:07.014 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:29:07.014 [Task submitter] INFO nextflow.Session - [5d/37c4ac] Submitted process > POREC:to_pairs_file (623) Aug-18 15:30:43.348 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1534; name: POREC:to_pairs_file (623); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/37c4ac87d981ba6976e0b2694ce0c0] Aug-18 15:30:43.352 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:30:43.353 [Task submitter] INFO nextflow.Session - [20/c34913] Submitted process > POREC:to_pairs_file (624) Aug-18 15:32:16.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1535; name: POREC:to_pairs_file (624); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/c349131e6606b8429e83c3aff8cb9b] Aug-18 15:32:16.823 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:32:16.823 [Task submitter] INFO nextflow.Session - [54/cb2de8] Submitted process > POREC:to_pairs_file (625) Aug-18 15:32:56.877 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 280 -- tasks to be submitted are shown below ~> TaskHandler[id: 1537; name: POREC:to_pairs_file (626); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/82806dcd7313967b7f04b519b9923c] ~> TaskHandler[id: 1538; name: POREC:to_pairs_file (627); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/fbf614cdd9c370cb411d158d9857e6] ~> TaskHandler[id: 1539; name: POREC:to_pairs_file (628); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/7dcc2865597cf4ad3e4b6a7fcca3b8] ~> TaskHandler[id: 1540; name: POREC:to_pairs_file (629); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/163184652aafec9141d5b25830fb5b] ~> TaskHandler[id: 1541; name: POREC:to_pairs_file (630); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/f0e86dbce9728142aed457ef207faa] ~> TaskHandler[id: 1542; name: POREC:to_pairs_file (631); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/dbd15b46a8810d3e45dca1268222e9] ~> TaskHandler[id: 1543; name: POREC:to_pairs_file (632); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/bfddb50d0cde668c0ece40360aea85] ~> TaskHandler[id: 1544; name: POREC:to_pairs_file (633); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/08a863e96bd96eb1e62afa07df647f] ~> TaskHandler[id: 1545; name: POREC:to_pairs_file (634); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2cab3f0c2175742721def1671127f5] ~> TaskHandler[id: 1547; name: POREC:to_pairs_file (636); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/d43bfdc9265d4748d7408f94df15cf] .. remaining tasks omitted. Aug-18 15:33:51.256 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1536; name: POREC:to_pairs_file (625); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/cb2de853433d784c34cbeda0069486] Aug-18 15:33:51.261 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:33:51.261 [Task submitter] INFO nextflow.Session - [47/82806d] Submitted process > POREC:to_pairs_file (626) Aug-18 15:33:55.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1537; name: POREC:to_pairs_file (626); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/82806dcd7313967b7f04b519b9923c] Aug-18 15:35:25.511 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1537; name: POREC:to_pairs_file (626); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/47/82806dcd7313967b7f04b519b9923c] Aug-18 15:35:25.515 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:35:25.515 [Task submitter] INFO nextflow.Session - [6b/fbf614] Submitted process > POREC:to_pairs_file (627) Aug-18 15:36:59.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1538; name: POREC:to_pairs_file (627); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/fbf614cdd9c370cb411d158d9857e6] Aug-18 15:36:59.477 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:36:59.489 [Task submitter] INFO nextflow.Session - [b5/7dcc28] Submitted process > POREC:to_pairs_file (628) Aug-18 15:37:57.616 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 277 -- tasks to be submitted are shown below ~> TaskHandler[id: 1540; name: POREC:to_pairs_file (629); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/163184652aafec9141d5b25830fb5b] ~> TaskHandler[id: 1541; name: POREC:to_pairs_file (630); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/f0e86dbce9728142aed457ef207faa] ~> TaskHandler[id: 1542; name: POREC:to_pairs_file (631); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/dbd15b46a8810d3e45dca1268222e9] ~> TaskHandler[id: 1543; name: POREC:to_pairs_file (632); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/bfddb50d0cde668c0ece40360aea85] ~> TaskHandler[id: 1544; name: POREC:to_pairs_file (633); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/08a863e96bd96eb1e62afa07df647f] ~> TaskHandler[id: 1545; name: POREC:to_pairs_file (634); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2cab3f0c2175742721def1671127f5] ~> TaskHandler[id: 1547; name: POREC:to_pairs_file (636); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/d43bfdc9265d4748d7408f94df15cf] ~> TaskHandler[id: 1548; name: POREC:to_pairs_file (637); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/343030d42c0784a0c564fb58478ead] ~> TaskHandler[id: 1549; name: POREC:to_pairs_file (638); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/f496af0d791787d319ff71ad430442] ~> TaskHandler[id: 1550; name: POREC:to_pairs_file (639); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/57d01e804774c9e39dfedd9d9b33fb] .. remaining tasks omitted. Aug-18 15:38:32.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1539; name: POREC:to_pairs_file (628); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/7dcc2865597cf4ad3e4b6a7fcca3b8] Aug-18 15:38:32.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:38:32.892 [Task submitter] INFO nextflow.Session - [0b/163184] Submitted process > POREC:to_pairs_file (629) Aug-18 15:38:55.235 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1540; name: POREC:to_pairs_file (629); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/163184652aafec9141d5b25830fb5b] Aug-18 15:40:06.524 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1540; name: POREC:to_pairs_file (629); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/163184652aafec9141d5b25830fb5b] Aug-18 15:40:06.558 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:40:06.558 [Task submitter] INFO nextflow.Session - [67/f0e86d] Submitted process > POREC:to_pairs_file (630) Aug-18 15:41:40.459 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1541; name: POREC:to_pairs_file (630); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/67/f0e86dbce9728142aed457ef207faa] Aug-18 15:41:40.520 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:41:40.536 [Task submitter] INFO nextflow.Session - [0f/dbd15b] Submitted process > POREC:to_pairs_file (631) Aug-18 15:42:57.616 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 274 -- tasks to be submitted are shown below ~> TaskHandler[id: 1543; name: POREC:to_pairs_file (632); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/bfddb50d0cde668c0ece40360aea85] ~> TaskHandler[id: 1544; name: POREC:to_pairs_file (633); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/08a863e96bd96eb1e62afa07df647f] ~> TaskHandler[id: 1545; name: POREC:to_pairs_file (634); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2cab3f0c2175742721def1671127f5] ~> TaskHandler[id: 1547; name: POREC:to_pairs_file (636); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/d43bfdc9265d4748d7408f94df15cf] ~> TaskHandler[id: 1548; name: POREC:to_pairs_file (637); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/343030d42c0784a0c564fb58478ead] ~> TaskHandler[id: 1549; name: POREC:to_pairs_file (638); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/f496af0d791787d319ff71ad430442] ~> TaskHandler[id: 1550; name: POREC:to_pairs_file (639); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/57d01e804774c9e39dfedd9d9b33fb] ~> TaskHandler[id: 1551; name: POREC:to_pairs_file (640); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/ae33518c26f8f2b9d9796c7399f1c5] ~> TaskHandler[id: 1552; name: POREC:to_pairs_file (641); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/d912f3f89eefc98fc759e68a87c659] ~> TaskHandler[id: 1553; name: POREC:to_pairs_file (642); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/8343b43e5909c05cd0700edeee9b36] .. remaining tasks omitted. Aug-18 15:43:14.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1542; name: POREC:to_pairs_file (631); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/dbd15b46a8810d3e45dca1268222e9] Aug-18 15:43:14.753 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:43:14.754 [Task submitter] INFO nextflow.Session - [b6/bfddb5] Submitted process > POREC:to_pairs_file (632) Aug-18 15:43:55.277 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1543; name: POREC:to_pairs_file (632); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/bfddb50d0cde668c0ece40360aea85] Aug-18 15:44:48.877 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1543; name: POREC:to_pairs_file (632); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/bfddb50d0cde668c0ece40360aea85] Aug-18 15:44:48.882 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:44:48.882 [Task submitter] INFO nextflow.Session - [25/08a863] Submitted process > POREC:to_pairs_file (633) Aug-18 15:46:22.240 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1544; name: POREC:to_pairs_file (633); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/08a863e96bd96eb1e62afa07df647f] Aug-18 15:46:22.248 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:46:22.267 [Task submitter] INFO nextflow.Session - [78/2cab3f] Submitted process > POREC:to_pairs_file (634) Aug-18 15:47:57.175 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1545; name: POREC:to_pairs_file (634); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/2cab3f0c2175742721def1671127f5] Aug-18 15:47:57.180 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:47:57.180 [Task submitter] INFO nextflow.Session - [41/d43bfd] Submitted process > POREC:to_pairs_file (636) Aug-18 15:47:58.182 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 270 -- tasks to be submitted are shown below ~> TaskHandler[id: 1548; name: POREC:to_pairs_file (637); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/343030d42c0784a0c564fb58478ead] ~> TaskHandler[id: 1549; name: POREC:to_pairs_file (638); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/f496af0d791787d319ff71ad430442] ~> TaskHandler[id: 1550; name: POREC:to_pairs_file (639); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/57d01e804774c9e39dfedd9d9b33fb] ~> TaskHandler[id: 1551; name: POREC:to_pairs_file (640); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/ae33518c26f8f2b9d9796c7399f1c5] ~> TaskHandler[id: 1552; name: POREC:to_pairs_file (641); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/d912f3f89eefc98fc759e68a87c659] ~> TaskHandler[id: 1553; name: POREC:to_pairs_file (642); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/8343b43e5909c05cd0700edeee9b36] ~> TaskHandler[id: 1554; name: POREC:to_pairs_file (643); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/ebcfe977503c031fb1f9d06bb163ab] ~> TaskHandler[id: 1555; name: POREC:to_pairs_file (644); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/f0428fa2b59017f6ac99bd9fe5e79e] ~> TaskHandler[id: 1556; name: POREC:to_pairs_file (645); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/b1e8299f91a6773c7ed43d90317150] ~> TaskHandler[id: 1557; name: POREC:to_pairs_file (646); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/645192778b2b123637e1e8d38662bd] .. remaining tasks omitted. Aug-18 15:48:55.286 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1547; name: POREC:to_pairs_file (636); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/d43bfdc9265d4748d7408f94df15cf] Aug-18 15:49:33.522 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1547; name: POREC:to_pairs_file (636); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/d43bfdc9265d4748d7408f94df15cf] Aug-18 15:49:33.569 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:49:33.569 [Task submitter] INFO nextflow.Session - [d5/343030] Submitted process > POREC:to_pairs_file (637) Aug-18 15:51:07.814 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1548; name: POREC:to_pairs_file (637); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/343030d42c0784a0c564fb58478ead] Aug-18 15:51:07.852 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:51:07.852 [Task submitter] INFO nextflow.Session - [41/f496af] Submitted process > POREC:to_pairs_file (638) Aug-18 15:52:42.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1549; name: POREC:to_pairs_file (638); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/f496af0d791787d319ff71ad430442] Aug-18 15:52:42.291 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:52:42.292 [Task submitter] INFO nextflow.Session - [d5/57d01e] Submitted process > POREC:to_pairs_file (639) Aug-18 15:52:58.312 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 267 -- tasks to be submitted are shown below ~> TaskHandler[id: 1551; name: POREC:to_pairs_file (640); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/ae33518c26f8f2b9d9796c7399f1c5] ~> TaskHandler[id: 1552; name: POREC:to_pairs_file (641); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/d912f3f89eefc98fc759e68a87c659] ~> TaskHandler[id: 1553; name: POREC:to_pairs_file (642); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/8343b43e5909c05cd0700edeee9b36] ~> TaskHandler[id: 1554; name: POREC:to_pairs_file (643); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/ebcfe977503c031fb1f9d06bb163ab] ~> TaskHandler[id: 1555; name: POREC:to_pairs_file (644); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/f0428fa2b59017f6ac99bd9fe5e79e] ~> TaskHandler[id: 1556; name: POREC:to_pairs_file (645); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/b1e8299f91a6773c7ed43d90317150] ~> TaskHandler[id: 1557; name: POREC:to_pairs_file (646); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/645192778b2b123637e1e8d38662bd] ~> TaskHandler[id: 1558; name: POREC:to_pairs_file (647); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/4c0698f3929ea93c26383fd173d49e] ~> TaskHandler[id: 1559; name: POREC:to_pairs_file (648); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/ea2bb8c62b92c9c5cf73d3cf8fdf92] ~> TaskHandler[id: 1560; name: POREC:to_pairs_file (649); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/a7238aa9a94430a68669fb34d94816] .. remaining tasks omitted. Aug-18 15:53:55.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1550; name: POREC:to_pairs_file (639); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/57d01e804774c9e39dfedd9d9b33fb] Aug-18 15:54:17.009 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1550; name: POREC:to_pairs_file (639); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d5/57d01e804774c9e39dfedd9d9b33fb] Aug-18 15:54:17.042 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:54:17.042 [Task submitter] INFO nextflow.Session - [42/ae3351] Submitted process > POREC:to_pairs_file (640) Aug-18 15:55:53.354 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1551; name: POREC:to_pairs_file (640); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/ae33518c26f8f2b9d9796c7399f1c5] Aug-18 15:55:53.382 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:55:53.382 [Task submitter] INFO nextflow.Session - [56/d912f3] Submitted process > POREC:to_pairs_file (641) Aug-18 15:57:27.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1552; name: POREC:to_pairs_file (641); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/d912f3f89eefc98fc759e68a87c659] Aug-18 15:57:27.718 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:57:27.718 [Task submitter] INFO nextflow.Session - [7f/8343b4] Submitted process > POREC:to_pairs_file (642) Aug-18 15:57:58.753 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 264 -- tasks to be submitted are shown below ~> TaskHandler[id: 1554; name: POREC:to_pairs_file (643); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/ebcfe977503c031fb1f9d06bb163ab] ~> TaskHandler[id: 1555; name: POREC:to_pairs_file (644); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/f0428fa2b59017f6ac99bd9fe5e79e] ~> TaskHandler[id: 1556; name: POREC:to_pairs_file (645); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/b1e8299f91a6773c7ed43d90317150] ~> TaskHandler[id: 1557; name: POREC:to_pairs_file (646); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/645192778b2b123637e1e8d38662bd] ~> TaskHandler[id: 1558; name: POREC:to_pairs_file (647); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/4c0698f3929ea93c26383fd173d49e] ~> TaskHandler[id: 1559; name: POREC:to_pairs_file (648); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/ea2bb8c62b92c9c5cf73d3cf8fdf92] ~> TaskHandler[id: 1560; name: POREC:to_pairs_file (649); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/a7238aa9a94430a68669fb34d94816] ~> TaskHandler[id: 1561; name: POREC:to_pairs_file (650); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/c08fda0c07d69327a844d4b9136e70] ~> TaskHandler[id: 1562; name: POREC:to_pairs_file (651); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/c3d8ceed07cc86c1d8a412ebdad497] ~> TaskHandler[id: 1563; name: POREC:to_pairs_file (652); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/501c0035a871c310dfd3c27f410ca3] .. remaining tasks omitted. Aug-18 15:58:55.394 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1553; name: POREC:to_pairs_file (642); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/8343b43e5909c05cd0700edeee9b36] Aug-18 15:59:02.490 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1553; name: POREC:to_pairs_file (642); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7f/8343b43e5909c05cd0700edeee9b36] Aug-18 15:59:02.498 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 15:59:02.498 [Task submitter] INFO nextflow.Session - [1d/ebcfe9] Submitted process > POREC:to_pairs_file (643) Aug-18 16:00:38.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1554; name: POREC:to_pairs_file (643); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/ebcfe977503c031fb1f9d06bb163ab] Aug-18 16:00:38.115 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:00:38.115 [Task submitter] INFO nextflow.Session - [6e/f0428f] Submitted process > POREC:to_pairs_file (644) Aug-18 16:02:12.200 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1555; name: POREC:to_pairs_file (644); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/f0428fa2b59017f6ac99bd9fe5e79e] Aug-18 16:02:12.219 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:02:12.219 [Task submitter] INFO nextflow.Session - [fd/b1e829] Submitted process > POREC:to_pairs_file (645) Aug-18 16:02:59.267 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 261 -- tasks to be submitted are shown below ~> TaskHandler[id: 1557; name: POREC:to_pairs_file (646); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/645192778b2b123637e1e8d38662bd] ~> TaskHandler[id: 1558; name: POREC:to_pairs_file (647); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/4c0698f3929ea93c26383fd173d49e] ~> TaskHandler[id: 1559; name: POREC:to_pairs_file (648); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/ea2bb8c62b92c9c5cf73d3cf8fdf92] ~> TaskHandler[id: 1560; name: POREC:to_pairs_file (649); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/a7238aa9a94430a68669fb34d94816] ~> TaskHandler[id: 1561; name: POREC:to_pairs_file (650); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/c08fda0c07d69327a844d4b9136e70] ~> TaskHandler[id: 1562; name: POREC:to_pairs_file (651); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/c3d8ceed07cc86c1d8a412ebdad497] ~> TaskHandler[id: 1563; name: POREC:to_pairs_file (652); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/501c0035a871c310dfd3c27f410ca3] ~> TaskHandler[id: 1564; name: POREC:to_pairs_file (653); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/c4a180cb8c9d43f77e6724c8b049e9] ~> TaskHandler[id: 1565; name: POREC:to_pairs_file (654); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/81b1f5f2f79e75c33a50ad157d0972] ~> TaskHandler[id: 1566; name: POREC:to_pairs_file (655); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/424bf26f4e4686a08f5ff846a1db97] .. remaining tasks omitted. Aug-18 16:03:45.905 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1556; name: POREC:to_pairs_file (645); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/b1e8299f91a6773c7ed43d90317150] Aug-18 16:03:45.917 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:03:45.917 [Task submitter] INFO nextflow.Session - [56/645192] Submitted process > POREC:to_pairs_file (646) Aug-18 16:03:55.484 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1557; name: POREC:to_pairs_file (646); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/645192778b2b123637e1e8d38662bd] Aug-18 16:05:21.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1557; name: POREC:to_pairs_file (646); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/645192778b2b123637e1e8d38662bd] Aug-18 16:05:21.770 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:05:21.770 [Task submitter] INFO nextflow.Session - [f2/4c0698] Submitted process > POREC:to_pairs_file (647) Aug-18 16:06:55.943 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1558; name: POREC:to_pairs_file (647); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/4c0698f3929ea93c26383fd173d49e] Aug-18 16:06:55.959 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:06:55.959 [Task submitter] INFO nextflow.Session - [fa/ea2bb8] Submitted process > POREC:to_pairs_file (648) Aug-18 16:08:00.042 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 258 -- tasks to be submitted are shown below ~> TaskHandler[id: 1560; name: POREC:to_pairs_file (649); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/a7238aa9a94430a68669fb34d94816] ~> TaskHandler[id: 1561; name: POREC:to_pairs_file (650); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/c08fda0c07d69327a844d4b9136e70] ~> TaskHandler[id: 1562; name: POREC:to_pairs_file (651); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/c3d8ceed07cc86c1d8a412ebdad497] ~> TaskHandler[id: 1563; name: POREC:to_pairs_file (652); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/501c0035a871c310dfd3c27f410ca3] ~> TaskHandler[id: 1564; name: POREC:to_pairs_file (653); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/c4a180cb8c9d43f77e6724c8b049e9] ~> TaskHandler[id: 1565; name: POREC:to_pairs_file (654); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/81b1f5f2f79e75c33a50ad157d0972] ~> TaskHandler[id: 1566; name: POREC:to_pairs_file (655); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/424bf26f4e4686a08f5ff846a1db97] ~> TaskHandler[id: 1567; name: POREC:to_pairs_file (656); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/dcf69bcbaac20bc67ed7ba2f77bdb4] ~> TaskHandler[id: 1568; name: POREC:to_pairs_file (657); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/c526916bada8595f06d05e36b8e8dd] ~> TaskHandler[id: 1569; name: POREC:to_pairs_file (658); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/58cc854ba89f4152d5df16c4cf9f91] .. remaining tasks omitted. Aug-18 16:08:29.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1559; name: POREC:to_pairs_file (648); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/ea2bb8c62b92c9c5cf73d3cf8fdf92] Aug-18 16:08:29.885 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:08:29.885 [Task submitter] INFO nextflow.Session - [bf/a7238a] Submitted process > POREC:to_pairs_file (649) Aug-18 16:08:55.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1560; name: POREC:to_pairs_file (649); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/a7238aa9a94430a68669fb34d94816] Aug-18 16:10:04.461 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1560; name: POREC:to_pairs_file (649); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/a7238aa9a94430a68669fb34d94816] Aug-18 16:10:04.466 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:10:04.466 [Task submitter] INFO nextflow.Session - [28/c08fda] Submitted process > POREC:to_pairs_file (650) Aug-18 16:11:40.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1561; name: POREC:to_pairs_file (650); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/c08fda0c07d69327a844d4b9136e70] Aug-18 16:11:40.245 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:11:40.245 [Task submitter] INFO nextflow.Session - [e4/c3d8ce] Submitted process > POREC:to_pairs_file (651) Aug-18 16:13:00.335 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 255 -- tasks to be submitted are shown below ~> TaskHandler[id: 1563; name: POREC:to_pairs_file (652); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/501c0035a871c310dfd3c27f410ca3] ~> TaskHandler[id: 1564; name: POREC:to_pairs_file (653); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/c4a180cb8c9d43f77e6724c8b049e9] ~> TaskHandler[id: 1565; name: POREC:to_pairs_file (654); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/81b1f5f2f79e75c33a50ad157d0972] ~> TaskHandler[id: 1566; name: POREC:to_pairs_file (655); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/424bf26f4e4686a08f5ff846a1db97] ~> TaskHandler[id: 1567; name: POREC:to_pairs_file (656); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/dcf69bcbaac20bc67ed7ba2f77bdb4] ~> TaskHandler[id: 1568; name: POREC:to_pairs_file (657); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/c526916bada8595f06d05e36b8e8dd] ~> TaskHandler[id: 1569; name: POREC:to_pairs_file (658); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/58cc854ba89f4152d5df16c4cf9f91] ~> TaskHandler[id: 1570; name: POREC:to_pairs_file (659); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/7570684fa9f4a2c17c0b6d1ae4b9aa] ~> TaskHandler[id: 1571; name: POREC:to_pairs_file (660); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/387648dc71eed70cddd110e1e6d1b8] ~> TaskHandler[id: 1572; name: POREC:to_pairs_file (661); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bc4698a540b44c1d5d6a93d0d3a3c0] .. remaining tasks omitted. Aug-18 16:13:16.320 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1562; name: POREC:to_pairs_file (651); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e4/c3d8ceed07cc86c1d8a412ebdad497] Aug-18 16:13:16.386 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:13:16.386 [Task submitter] INFO nextflow.Session - [8d/501c00] Submitted process > POREC:to_pairs_file (652) Aug-18 16:13:55.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1563; name: POREC:to_pairs_file (652); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/501c0035a871c310dfd3c27f410ca3] Aug-18 16:14:50.278 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1563; name: POREC:to_pairs_file (652); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/501c0035a871c310dfd3c27f410ca3] Aug-18 16:14:50.327 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:14:50.327 [Task submitter] INFO nextflow.Session - [b7/c4a180] Submitted process > POREC:to_pairs_file (653) Aug-18 16:16:25.551 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1564; name: POREC:to_pairs_file (653); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b7/c4a180cb8c9d43f77e6724c8b049e9] Aug-18 16:16:25.609 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:16:25.609 [Task submitter] INFO nextflow.Session - [89/81b1f5] Submitted process > POREC:to_pairs_file (654) Aug-18 16:18:00.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1565; name: POREC:to_pairs_file (654); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/81b1f5f2f79e75c33a50ad157d0972] Aug-18 16:18:00.223 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:18:00.223 [Task submitter] INFO nextflow.Session - [56/424bf2] Submitted process > POREC:to_pairs_file (655) Aug-18 16:18:01.226 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 251 -- tasks to be submitted are shown below ~> TaskHandler[id: 1567; name: POREC:to_pairs_file (656); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/dcf69bcbaac20bc67ed7ba2f77bdb4] ~> TaskHandler[id: 1568; name: POREC:to_pairs_file (657); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/c526916bada8595f06d05e36b8e8dd] ~> TaskHandler[id: 1569; name: POREC:to_pairs_file (658); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/58cc854ba89f4152d5df16c4cf9f91] ~> TaskHandler[id: 1570; name: POREC:to_pairs_file (659); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/7570684fa9f4a2c17c0b6d1ae4b9aa] ~> TaskHandler[id: 1571; name: POREC:to_pairs_file (660); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/387648dc71eed70cddd110e1e6d1b8] ~> TaskHandler[id: 1572; name: POREC:to_pairs_file (661); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bc4698a540b44c1d5d6a93d0d3a3c0] ~> TaskHandler[id: 1573; name: POREC:to_pairs_file (662); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/57000de50cd961bf04e952253b6a4b] ~> TaskHandler[id: 1574; name: POREC:to_pairs_file (663); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f3276c0495ecb1a8b37f1028ce75df] ~> TaskHandler[id: 1575; name: POREC:to_pairs_file (664); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/33857783f80318d9821b2732e8ebf6] ~> TaskHandler[id: 1576; name: POREC:to_pairs_file (665); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d54bd86781b26e6217da3b574c9dfe] .. remaining tasks omitted. Aug-18 16:18:55.593 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1566; name: POREC:to_pairs_file (655); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/424bf26f4e4686a08f5ff846a1db97] Aug-18 16:19:35.248 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1566; name: POREC:to_pairs_file (655); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/424bf26f4e4686a08f5ff846a1db97] Aug-18 16:19:35.281 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:19:35.281 [Task submitter] INFO nextflow.Session - [0f/dcf69b] Submitted process > POREC:to_pairs_file (656) Aug-18 16:21:10.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1567; name: POREC:to_pairs_file (656); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0f/dcf69bcbaac20bc67ed7ba2f77bdb4] Aug-18 16:21:10.565 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:21:10.565 [Task submitter] INFO nextflow.Session - [9b/c52691] Submitted process > POREC:to_pairs_file (657) Aug-18 16:22:45.144 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1568; name: POREC:to_pairs_file (657); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/c526916bada8595f06d05e36b8e8dd] Aug-18 16:22:45.190 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:22:45.190 [Task submitter] INFO nextflow.Session - [17/58cc85] Submitted process > POREC:to_pairs_file (658) Aug-18 16:23:02.212 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 248 -- tasks to be submitted are shown below ~> TaskHandler[id: 1570; name: POREC:to_pairs_file (659); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/7570684fa9f4a2c17c0b6d1ae4b9aa] ~> TaskHandler[id: 1571; name: POREC:to_pairs_file (660); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/387648dc71eed70cddd110e1e6d1b8] ~> TaskHandler[id: 1572; name: POREC:to_pairs_file (661); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bc4698a540b44c1d5d6a93d0d3a3c0] ~> TaskHandler[id: 1573; name: POREC:to_pairs_file (662); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/57000de50cd961bf04e952253b6a4b] ~> TaskHandler[id: 1574; name: POREC:to_pairs_file (663); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f3276c0495ecb1a8b37f1028ce75df] ~> TaskHandler[id: 1575; name: POREC:to_pairs_file (664); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/33857783f80318d9821b2732e8ebf6] ~> TaskHandler[id: 1576; name: POREC:to_pairs_file (665); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d54bd86781b26e6217da3b574c9dfe] ~> TaskHandler[id: 1577; name: POREC:to_pairs_file (666); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/51bbd80fdb7a61d0c1a319c89a8fbb] ~> TaskHandler[id: 1578; name: POREC:to_pairs_file (667); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/6bfa27a052c5cd4e2729f60b45a366] ~> TaskHandler[id: 1579; name: POREC:to_pairs_file (668); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/2e7006a49fbcb24fb2ff11cd73f565] .. remaining tasks omitted. Aug-18 16:23:55.663 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1569; name: POREC:to_pairs_file (658); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/58cc854ba89f4152d5df16c4cf9f91] Aug-18 16:24:19.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1569; name: POREC:to_pairs_file (658); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/58cc854ba89f4152d5df16c4cf9f91] Aug-18 16:24:19.703 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:24:19.703 [Task submitter] INFO nextflow.Session - [36/757068] Submitted process > POREC:to_pairs_file (659) Aug-18 16:25:53.123 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1570; name: POREC:to_pairs_file (659); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/36/7570684fa9f4a2c17c0b6d1ae4b9aa] Aug-18 16:25:53.176 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:25:53.176 [Task submitter] INFO nextflow.Session - [72/387648] Submitted process > POREC:to_pairs_file (660) Aug-18 16:27:26.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1571; name: POREC:to_pairs_file (660); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/387648dc71eed70cddd110e1e6d1b8] Aug-18 16:27:26.720 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:27:26.720 [Task submitter] INFO nextflow.Session - [a1/bc4698] Submitted process > POREC:to_pairs_file (661) Aug-18 16:28:02.769 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 245 -- tasks to be submitted are shown below ~> TaskHandler[id: 1573; name: POREC:to_pairs_file (662); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/57000de50cd961bf04e952253b6a4b] ~> TaskHandler[id: 1574; name: POREC:to_pairs_file (663); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f3276c0495ecb1a8b37f1028ce75df] ~> TaskHandler[id: 1575; name: POREC:to_pairs_file (664); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/33857783f80318d9821b2732e8ebf6] ~> TaskHandler[id: 1576; name: POREC:to_pairs_file (665); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d54bd86781b26e6217da3b574c9dfe] ~> TaskHandler[id: 1577; name: POREC:to_pairs_file (666); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/51bbd80fdb7a61d0c1a319c89a8fbb] ~> TaskHandler[id: 1578; name: POREC:to_pairs_file (667); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/6bfa27a052c5cd4e2729f60b45a366] ~> TaskHandler[id: 1579; name: POREC:to_pairs_file (668); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/2e7006a49fbcb24fb2ff11cd73f565] ~> TaskHandler[id: 1580; name: POREC:to_pairs_file (669); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/51cd0c97417b721d510fcf4a149eac] ~> TaskHandler[id: 1581; name: POREC:to_pairs_file (670); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/1dd28c225aae84396946ce199b3a6f] ~> TaskHandler[id: 1582; name: POREC:to_pairs_file (671); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/d1b27d45c655863a4a121059f34256] .. remaining tasks omitted. Aug-18 16:28:55.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1572; name: POREC:to_pairs_file (661); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bc4698a540b44c1d5d6a93d0d3a3c0] Aug-18 16:28:58.807 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1572; name: POREC:to_pairs_file (661); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a1/bc4698a540b44c1d5d6a93d0d3a3c0] Aug-18 16:28:58.850 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:28:58.850 [Task submitter] INFO nextflow.Session - [41/57000d] Submitted process > POREC:to_pairs_file (662) Aug-18 16:30:35.243 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1573; name: POREC:to_pairs_file (662); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/57000de50cd961bf04e952253b6a4b] Aug-18 16:30:35.264 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:30:35.264 [Task submitter] INFO nextflow.Session - [86/f3276c] Submitted process > POREC:to_pairs_file (663) Aug-18 16:32:12.436 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1574; name: POREC:to_pairs_file (663); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/86/f3276c0495ecb1a8b37f1028ce75df] Aug-18 16:32:12.439 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:32:12.440 [Task submitter] INFO nextflow.Session - [ad/338577] Submitted process > POREC:to_pairs_file (664) Aug-18 16:33:03.497 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 242 -- tasks to be submitted are shown below ~> TaskHandler[id: 1576; name: POREC:to_pairs_file (665); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d54bd86781b26e6217da3b574c9dfe] ~> TaskHandler[id: 1577; name: POREC:to_pairs_file (666); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/51bbd80fdb7a61d0c1a319c89a8fbb] ~> TaskHandler[id: 1578; name: POREC:to_pairs_file (667); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/6bfa27a052c5cd4e2729f60b45a366] ~> TaskHandler[id: 1579; name: POREC:to_pairs_file (668); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/2e7006a49fbcb24fb2ff11cd73f565] ~> TaskHandler[id: 1580; name: POREC:to_pairs_file (669); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/51cd0c97417b721d510fcf4a149eac] ~> TaskHandler[id: 1581; name: POREC:to_pairs_file (670); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/1dd28c225aae84396946ce199b3a6f] ~> TaskHandler[id: 1582; name: POREC:to_pairs_file (671); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/d1b27d45c655863a4a121059f34256] ~> TaskHandler[id: 1583; name: POREC:to_pairs_file (672); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/8b899c9a7d664caa10401018745af5] ~> TaskHandler[id: 1584; name: POREC:to_pairs_file (673); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/fcb522700c45e69401a16679a90fb5] ~> TaskHandler[id: 1585; name: POREC:to_pairs_file (674); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/4c971e37e73de61c29b27b2ee7573e] .. remaining tasks omitted. Aug-18 16:33:47.888 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1575; name: POREC:to_pairs_file (664); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ad/33857783f80318d9821b2732e8ebf6] Aug-18 16:33:47.894 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:33:47.894 [Task submitter] INFO nextflow.Session - [88/d54bd8] Submitted process > POREC:to_pairs_file (665) Aug-18 16:33:55.806 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1576; name: POREC:to_pairs_file (665); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d54bd86781b26e6217da3b574c9dfe] Aug-18 16:35:26.600 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1576; name: POREC:to_pairs_file (665); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/88/d54bd86781b26e6217da3b574c9dfe] Aug-18 16:35:26.621 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:35:26.621 [Task submitter] INFO nextflow.Session - [fa/51bbd8] Submitted process > POREC:to_pairs_file (666) Aug-18 16:37:00.687 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1577; name: POREC:to_pairs_file (666); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/51bbd80fdb7a61d0c1a319c89a8fbb] Aug-18 16:37:00.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:37:00.692 [Task submitter] INFO nextflow.Session - [25/6bfa27] Submitted process > POREC:to_pairs_file (667) Aug-18 16:38:03.765 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 239 -- tasks to be submitted are shown below ~> TaskHandler[id: 1579; name: POREC:to_pairs_file (668); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/2e7006a49fbcb24fb2ff11cd73f565] ~> TaskHandler[id: 1580; name: POREC:to_pairs_file (669); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/51cd0c97417b721d510fcf4a149eac] ~> TaskHandler[id: 1581; name: POREC:to_pairs_file (670); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/1dd28c225aae84396946ce199b3a6f] ~> TaskHandler[id: 1582; name: POREC:to_pairs_file (671); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/d1b27d45c655863a4a121059f34256] ~> TaskHandler[id: 1583; name: POREC:to_pairs_file (672); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/8b899c9a7d664caa10401018745af5] ~> TaskHandler[id: 1584; name: POREC:to_pairs_file (673); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/fcb522700c45e69401a16679a90fb5] ~> TaskHandler[id: 1585; name: POREC:to_pairs_file (674); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/4c971e37e73de61c29b27b2ee7573e] ~> TaskHandler[id: 1586; name: POREC:to_pairs_file (675); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b6c063698bc993636f2cdf27e6fd23] ~> TaskHandler[id: 1587; name: POREC:to_pairs_file (676); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/63ff26d948aeefb0d9132026298055] ~> TaskHandler[id: 1588; name: POREC:to_pairs_file (677); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/46ec8c75a39ca5ebb266d4c2b3b162] .. remaining tasks omitted. Aug-18 16:38:37.975 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1578; name: POREC:to_pairs_file (667); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/6bfa27a052c5cd4e2729f60b45a366] Aug-18 16:38:37.978 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:38:37.978 [Task submitter] INFO nextflow.Session - [cf/2e7006] Submitted process > POREC:to_pairs_file (668) Aug-18 16:38:55.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1579; name: POREC:to_pairs_file (668); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/2e7006a49fbcb24fb2ff11cd73f565] Aug-18 16:40:11.813 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1579; name: POREC:to_pairs_file (668); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/2e7006a49fbcb24fb2ff11cd73f565] Aug-18 16:40:11.818 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:40:11.834 [Task submitter] INFO nextflow.Session - [4e/51cd0c] Submitted process > POREC:to_pairs_file (669) Aug-18 16:41:46.027 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1580; name: POREC:to_pairs_file (669); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/51cd0c97417b721d510fcf4a149eac] Aug-18 16:41:46.048 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:41:46.048 [Task submitter] INFO nextflow.Session - [9b/1dd28c] Submitted process > POREC:to_pairs_file (670) Aug-18 16:43:04.132 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 236 -- tasks to be submitted are shown below ~> TaskHandler[id: 1582; name: POREC:to_pairs_file (671); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/d1b27d45c655863a4a121059f34256] ~> TaskHandler[id: 1583; name: POREC:to_pairs_file (672); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/8b899c9a7d664caa10401018745af5] ~> TaskHandler[id: 1584; name: POREC:to_pairs_file (673); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/fcb522700c45e69401a16679a90fb5] ~> TaskHandler[id: 1585; name: POREC:to_pairs_file (674); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/4c971e37e73de61c29b27b2ee7573e] ~> TaskHandler[id: 1586; name: POREC:to_pairs_file (675); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b6c063698bc993636f2cdf27e6fd23] ~> TaskHandler[id: 1587; name: POREC:to_pairs_file (676); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/63ff26d948aeefb0d9132026298055] ~> TaskHandler[id: 1588; name: POREC:to_pairs_file (677); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/46ec8c75a39ca5ebb266d4c2b3b162] ~> TaskHandler[id: 1589; name: POREC:to_pairs_file (678); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/8ae2816544e24c4767c7539378005f] ~> TaskHandler[id: 1590; name: POREC:to_pairs_file (679); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/ca740f3eda3a5c7d94c743d7273429] ~> TaskHandler[id: 1591; name: POREC:to_pairs_file (680); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/2484cd98464fd4cfefb8f9094061c4] .. remaining tasks omitted. Aug-18 16:43:20.751 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1581; name: POREC:to_pairs_file (670); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/1dd28c225aae84396946ce199b3a6f] Aug-18 16:43:20.783 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:43:20.783 [Task submitter] INFO nextflow.Session - [d3/d1b27d] Submitted process > POREC:to_pairs_file (671) Aug-18 16:43:56.001 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1582; name: POREC:to_pairs_file (671); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/d1b27d45c655863a4a121059f34256] Aug-18 16:44:55.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1582; name: POREC:to_pairs_file (671); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d3/d1b27d45c655863a4a121059f34256] Aug-18 16:44:55.960 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:44:55.969 [Task submitter] INFO nextflow.Session - [26/8b899c] Submitted process > POREC:to_pairs_file (672) Aug-18 16:46:31.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1583; name: POREC:to_pairs_file (672); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/26/8b899c9a7d664caa10401018745af5] Aug-18 16:46:31.610 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:46:31.610 [Task submitter] INFO nextflow.Session - [99/fcb522] Submitted process > POREC:to_pairs_file (673) Aug-18 16:48:04.738 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 233 -- tasks to be submitted are shown below ~> TaskHandler[id: 1585; name: POREC:to_pairs_file (674); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/4c971e37e73de61c29b27b2ee7573e] ~> TaskHandler[id: 1586; name: POREC:to_pairs_file (675); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b6c063698bc993636f2cdf27e6fd23] ~> TaskHandler[id: 1587; name: POREC:to_pairs_file (676); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/63ff26d948aeefb0d9132026298055] ~> TaskHandler[id: 1588; name: POREC:to_pairs_file (677); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/46ec8c75a39ca5ebb266d4c2b3b162] ~> TaskHandler[id: 1589; name: POREC:to_pairs_file (678); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/8ae2816544e24c4767c7539378005f] ~> TaskHandler[id: 1590; name: POREC:to_pairs_file (679); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/ca740f3eda3a5c7d94c743d7273429] ~> TaskHandler[id: 1591; name: POREC:to_pairs_file (680); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/2484cd98464fd4cfefb8f9094061c4] ~> TaskHandler[id: 1592; name: POREC:to_pairs_file (681); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/04ff19aefa8f87d57694cc382ede0e] ~> TaskHandler[id: 1593; name: POREC:to_pairs_file (682); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/6b2539e0b0928b695b49be2a11f54f] ~> TaskHandler[id: 1594; name: POREC:to_pairs_file (683); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/ac71afff15e73531498942a2be98c9] .. remaining tasks omitted. Aug-18 16:48:05.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1584; name: POREC:to_pairs_file (673); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/fcb522700c45e69401a16679a90fb5] Aug-18 16:48:05.125 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:48:05.125 [Task submitter] INFO nextflow.Session - [eb/4c971e] Submitted process > POREC:to_pairs_file (674) Aug-18 16:48:56.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1585; name: POREC:to_pairs_file (674); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/4c971e37e73de61c29b27b2ee7573e] Aug-18 16:49:39.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1585; name: POREC:to_pairs_file (674); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/4c971e37e73de61c29b27b2ee7573e] Aug-18 16:49:40.003 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:49:40.018 [Task submitter] INFO nextflow.Session - [a9/b6c063] Submitted process > POREC:to_pairs_file (675) Aug-18 16:51:12.574 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1586; name: POREC:to_pairs_file (675); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/b6c063698bc993636f2cdf27e6fd23] Aug-18 16:51:12.659 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:51:12.659 [Task submitter] INFO nextflow.Session - [da/63ff26] Submitted process > POREC:to_pairs_file (676) Aug-18 16:52:46.310 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1587; name: POREC:to_pairs_file (676); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/63ff26d948aeefb0d9132026298055] Aug-18 16:52:46.342 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:52:46.342 [Task submitter] INFO nextflow.Session - [3c/46ec8c] Submitted process > POREC:to_pairs_file (677) Aug-18 16:53:05.408 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 229 -- tasks to be submitted are shown below ~> TaskHandler[id: 1589; name: POREC:to_pairs_file (678); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/8ae2816544e24c4767c7539378005f] ~> TaskHandler[id: 1590; name: POREC:to_pairs_file (679); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/ca740f3eda3a5c7d94c743d7273429] ~> TaskHandler[id: 1591; name: POREC:to_pairs_file (680); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/2484cd98464fd4cfefb8f9094061c4] ~> TaskHandler[id: 1592; name: POREC:to_pairs_file (681); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/04ff19aefa8f87d57694cc382ede0e] ~> TaskHandler[id: 1593; name: POREC:to_pairs_file (682); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/6b2539e0b0928b695b49be2a11f54f] ~> TaskHandler[id: 1594; name: POREC:to_pairs_file (683); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/ac71afff15e73531498942a2be98c9] ~> TaskHandler[id: 1595; name: POREC:to_pairs_file (684); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/fce981d7a7d415b747a881d1f8b8f1] ~> TaskHandler[id: 1596; name: POREC:to_pairs_file (685); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/e0bedf04de71082b18858f161c1c88] ~> TaskHandler[id: 1597; name: POREC:to_pairs_file (686); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/fec3b3dfc2a9f0ba3d999544e52a05] ~> TaskHandler[id: 1598; name: POREC:to_pairs_file (687); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/cfeb02029618b22370833b8a836652] .. remaining tasks omitted. Aug-18 16:53:56.057 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1588; name: POREC:to_pairs_file (677); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/46ec8c75a39ca5ebb266d4c2b3b162] Aug-18 16:54:20.887 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1588; name: POREC:to_pairs_file (677); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/46ec8c75a39ca5ebb266d4c2b3b162] Aug-18 16:54:20.891 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:54:20.891 [Task submitter] INFO nextflow.Session - [21/8ae281] Submitted process > POREC:to_pairs_file (678) Aug-18 16:55:56.301 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1589; name: POREC:to_pairs_file (678); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/8ae2816544e24c4767c7539378005f] Aug-18 16:55:56.307 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:55:56.307 [Task submitter] INFO nextflow.Session - [6c/ca740f] Submitted process > POREC:to_pairs_file (679) Aug-18 16:57:31.526 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1590; name: POREC:to_pairs_file (679); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6c/ca740f3eda3a5c7d94c743d7273429] Aug-18 16:57:31.530 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:57:31.530 [Task submitter] INFO nextflow.Session - [f2/2484cd] Submitted process > POREC:to_pairs_file (680) Aug-18 16:58:05.574 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 226 -- tasks to be submitted are shown below ~> TaskHandler[id: 1592; name: POREC:to_pairs_file (681); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/04ff19aefa8f87d57694cc382ede0e] ~> TaskHandler[id: 1593; name: POREC:to_pairs_file (682); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/6b2539e0b0928b695b49be2a11f54f] ~> TaskHandler[id: 1594; name: POREC:to_pairs_file (683); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/ac71afff15e73531498942a2be98c9] ~> TaskHandler[id: 1595; name: POREC:to_pairs_file (684); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/fce981d7a7d415b747a881d1f8b8f1] ~> TaskHandler[id: 1596; name: POREC:to_pairs_file (685); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/e0bedf04de71082b18858f161c1c88] ~> TaskHandler[id: 1597; name: POREC:to_pairs_file (686); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/fec3b3dfc2a9f0ba3d999544e52a05] ~> TaskHandler[id: 1598; name: POREC:to_pairs_file (687); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/cfeb02029618b22370833b8a836652] ~> TaskHandler[id: 1599; name: POREC:to_pairs_file (688); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/79cbeb6f3ab9e361c06c1332bdd730] ~> TaskHandler[id: 1600; name: POREC:to_pairs_file (689); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/4b39a6759ca39be35534dc979c754a] ~> TaskHandler[id: 1601; name: POREC:to_pairs_file (690); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/0873101cacf393bce5e319a9bd8063] .. remaining tasks omitted. Aug-18 16:58:56.108 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1591; name: POREC:to_pairs_file (680); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/2484cd98464fd4cfefb8f9094061c4] Aug-18 16:59:07.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1591; name: POREC:to_pairs_file (680); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/2484cd98464fd4cfefb8f9094061c4] Aug-18 16:59:07.625 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 16:59:07.625 [Task submitter] INFO nextflow.Session - [eb/04ff19] Submitted process > POREC:to_pairs_file (681) Aug-18 17:00:42.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1592; name: POREC:to_pairs_file (681); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/04ff19aefa8f87d57694cc382ede0e] Aug-18 17:00:42.667 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:00:42.667 [Task submitter] INFO nextflow.Session - [6b/6b2539] Submitted process > POREC:to_pairs_file (682) Aug-18 17:02:17.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1593; name: POREC:to_pairs_file (682); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6b/6b2539e0b0928b695b49be2a11f54f] Aug-18 17:02:17.546 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:02:17.546 [Task submitter] INFO nextflow.Session - [a7/ac71af] Submitted process > POREC:to_pairs_file (683) Aug-18 17:03:05.604 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 223 -- tasks to be submitted are shown below ~> TaskHandler[id: 1595; name: POREC:to_pairs_file (684); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/fce981d7a7d415b747a881d1f8b8f1] ~> TaskHandler[id: 1596; name: POREC:to_pairs_file (685); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/e0bedf04de71082b18858f161c1c88] ~> TaskHandler[id: 1597; name: POREC:to_pairs_file (686); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/fec3b3dfc2a9f0ba3d999544e52a05] ~> TaskHandler[id: 1598; name: POREC:to_pairs_file (687); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/cfeb02029618b22370833b8a836652] ~> TaskHandler[id: 1599; name: POREC:to_pairs_file (688); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/79cbeb6f3ab9e361c06c1332bdd730] ~> TaskHandler[id: 1600; name: POREC:to_pairs_file (689); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/4b39a6759ca39be35534dc979c754a] ~> TaskHandler[id: 1601; name: POREC:to_pairs_file (690); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/0873101cacf393bce5e319a9bd8063] ~> TaskHandler[id: 1602; name: POREC:to_pairs_file (691); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/abba8876a70e91b323f3a3958e20af] ~> TaskHandler[id: 1603; name: POREC:to_pairs_file (692); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/e6af7f45265cf09d2b486a94c30dbd] ~> TaskHandler[id: 1604; name: POREC:to_pairs_file (693); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/a0c1885ec183aebd5621e6fd8fb83b] .. remaining tasks omitted. Aug-18 17:03:51.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1594; name: POREC:to_pairs_file (683); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a7/ac71afff15e73531498942a2be98c9] Aug-18 17:03:51.156 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:03:51.156 [Task submitter] INFO nextflow.Session - [3c/fce981] Submitted process > POREC:to_pairs_file (684) Aug-18 17:03:56.150 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1595; name: POREC:to_pairs_file (684); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/fce981d7a7d415b747a881d1f8b8f1] Aug-18 17:05:25.644 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1595; name: POREC:to_pairs_file (684); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/fce981d7a7d415b747a881d1f8b8f1] Aug-18 17:05:25.656 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:05:25.656 [Task submitter] INFO nextflow.Session - [d4/e0bedf] Submitted process > POREC:to_pairs_file (685) Aug-18 17:07:00.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1596; name: POREC:to_pairs_file (685); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d4/e0bedf04de71082b18858f161c1c88] Aug-18 17:07:00.630 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:07:00.630 [Task submitter] INFO nextflow.Session - [02/fec3b3] Submitted process > POREC:to_pairs_file (686) Aug-18 17:08:05.705 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 220 -- tasks to be submitted are shown below ~> TaskHandler[id: 1598; name: POREC:to_pairs_file (687); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/cfeb02029618b22370833b8a836652] ~> TaskHandler[id: 1599; name: POREC:to_pairs_file (688); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/79cbeb6f3ab9e361c06c1332bdd730] ~> TaskHandler[id: 1600; name: POREC:to_pairs_file (689); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/4b39a6759ca39be35534dc979c754a] ~> TaskHandler[id: 1601; name: POREC:to_pairs_file (690); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/0873101cacf393bce5e319a9bd8063] ~> TaskHandler[id: 1602; name: POREC:to_pairs_file (691); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/abba8876a70e91b323f3a3958e20af] ~> TaskHandler[id: 1603; name: POREC:to_pairs_file (692); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/e6af7f45265cf09d2b486a94c30dbd] ~> TaskHandler[id: 1604; name: POREC:to_pairs_file (693); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/a0c1885ec183aebd5621e6fd8fb83b] ~> TaskHandler[id: 1605; name: POREC:to_pairs_file (694); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/32ddcec83dc08b84f5bf7c7633e7d7] ~> TaskHandler[id: 1606; name: POREC:to_pairs_file (695); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/c3b7414eff20059d07531dcaaf3623] ~> TaskHandler[id: 1607; name: POREC:to_pairs_file (696); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/aae4e440359cbaeeba671f06808ce6] .. remaining tasks omitted. Aug-18 17:08:33.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1597; name: POREC:to_pairs_file (686); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/02/fec3b3dfc2a9f0ba3d999544e52a05] Aug-18 17:08:33.704 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:08:33.704 [Task submitter] INFO nextflow.Session - [8b/cfeb02] Submitted process > POREC:to_pairs_file (687) Aug-18 17:08:56.187 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1598; name: POREC:to_pairs_file (687); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/cfeb02029618b22370833b8a836652] Aug-18 17:10:08.062 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1598; name: POREC:to_pairs_file (687); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8b/cfeb02029618b22370833b8a836652] Aug-18 17:10:08.081 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:10:08.081 [Task submitter] INFO nextflow.Session - [99/79cbeb] Submitted process > POREC:to_pairs_file (688) Aug-18 17:11:41.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1599; name: POREC:to_pairs_file (688); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/79cbeb6f3ab9e361c06c1332bdd730] Aug-18 17:11:41.988 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:11:41.988 [Task submitter] INFO nextflow.Session - [17/4b39a6] Submitted process > POREC:to_pairs_file (689) Aug-18 17:13:06.076 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 217 -- tasks to be submitted are shown below ~> TaskHandler[id: 1601; name: POREC:to_pairs_file (690); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/0873101cacf393bce5e319a9bd8063] ~> TaskHandler[id: 1602; name: POREC:to_pairs_file (691); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/abba8876a70e91b323f3a3958e20af] ~> TaskHandler[id: 1603; name: POREC:to_pairs_file (692); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/e6af7f45265cf09d2b486a94c30dbd] ~> TaskHandler[id: 1604; name: POREC:to_pairs_file (693); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/a0c1885ec183aebd5621e6fd8fb83b] ~> TaskHandler[id: 1605; name: POREC:to_pairs_file (694); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/32ddcec83dc08b84f5bf7c7633e7d7] ~> TaskHandler[id: 1606; name: POREC:to_pairs_file (695); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/c3b7414eff20059d07531dcaaf3623] ~> TaskHandler[id: 1607; name: POREC:to_pairs_file (696); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/aae4e440359cbaeeba671f06808ce6] ~> TaskHandler[id: 1608; name: POREC:to_pairs_file (697); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/757c0270aa6cf82cc67c6176f36a0a] ~> TaskHandler[id: 1609; name: POREC:to_pairs_file (698); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/c4b35b1608fa24bc1a43189711613a] ~> TaskHandler[id: 1610; name: POREC:to_pairs_file (699); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/0d8d819127efa34d9193c34050344f] .. remaining tasks omitted. Aug-18 17:13:18.174 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1600; name: POREC:to_pairs_file (689); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/4b39a6759ca39be35534dc979c754a] Aug-18 17:13:18.223 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:13:18.223 [Task submitter] INFO nextflow.Session - [cf/087310] Submitted process > POREC:to_pairs_file (690) Aug-18 17:13:56.264 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1601; name: POREC:to_pairs_file (690); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/0873101cacf393bce5e319a9bd8063] Aug-18 17:14:52.145 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1601; name: POREC:to_pairs_file (690); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/0873101cacf393bce5e319a9bd8063] Aug-18 17:14:52.189 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:14:52.189 [Task submitter] INFO nextflow.Session - [14/abba88] Submitted process > POREC:to_pairs_file (691) Aug-18 17:16:24.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1602; name: POREC:to_pairs_file (691); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/abba8876a70e91b323f3a3958e20af] Aug-18 17:16:24.163 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:16:24.163 [Task submitter] INFO nextflow.Session - [12/e6af7f] Submitted process > POREC:to_pairs_file (692) Aug-18 17:17:55.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1603; name: POREC:to_pairs_file (692); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/12/e6af7f45265cf09d2b486a94c30dbd] Aug-18 17:17:55.472 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:17:55.472 [Task submitter] INFO nextflow.Session - [1d/a0c188] Submitted process > POREC:to_pairs_file (693) Aug-18 17:18:06.506 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 213 -- tasks to be submitted are shown below ~> TaskHandler[id: 1605; name: POREC:to_pairs_file (694); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/32ddcec83dc08b84f5bf7c7633e7d7] ~> TaskHandler[id: 1606; name: POREC:to_pairs_file (695); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/c3b7414eff20059d07531dcaaf3623] ~> TaskHandler[id: 1607; name: POREC:to_pairs_file (696); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/aae4e440359cbaeeba671f06808ce6] ~> TaskHandler[id: 1608; name: POREC:to_pairs_file (697); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/757c0270aa6cf82cc67c6176f36a0a] ~> TaskHandler[id: 1609; name: POREC:to_pairs_file (698); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/c4b35b1608fa24bc1a43189711613a] ~> TaskHandler[id: 1610; name: POREC:to_pairs_file (699); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/0d8d819127efa34d9193c34050344f] ~> TaskHandler[id: 1611; name: POREC:to_pairs_file (700); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/e2692ba4630640c19c5ec04cea549f] ~> TaskHandler[id: 1612; name: POREC:to_pairs_file (701); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/a6e4ee6543e69d635375c8a566caa8] ~> TaskHandler[id: 1613; name: POREC:to_pairs_file (702); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/c83dc33c915058128eeb4e4b41668e] ~> TaskHandler[id: 1614; name: POREC:to_pairs_file (703); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/c3d3ad51c597b4a16454614cc9651d] .. remaining tasks omitted. Aug-18 17:18:56.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1604; name: POREC:to_pairs_file (693); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/a0c1885ec183aebd5621e6fd8fb83b] Aug-18 17:19:28.004 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1604; name: POREC:to_pairs_file (693); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1d/a0c1885ec183aebd5621e6fd8fb83b] Aug-18 17:19:28.046 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:19:28.047 [Task submitter] INFO nextflow.Session - [60/32ddce] Submitted process > POREC:to_pairs_file (694) Aug-18 17:21:03.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1605; name: POREC:to_pairs_file (694); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/32ddcec83dc08b84f5bf7c7633e7d7] Aug-18 17:21:03.839 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:21:03.839 [Task submitter] INFO nextflow.Session - [6a/c3b741] Submitted process > POREC:to_pairs_file (695) Aug-18 17:22:36.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1606; name: POREC:to_pairs_file (695); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/c3b7414eff20059d07531dcaaf3623] Aug-18 17:22:36.887 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:22:36.887 [Task submitter] INFO nextflow.Session - [9a/aae4e4] Submitted process > POREC:to_pairs_file (696) Aug-18 17:23:06.918 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 210 -- tasks to be submitted are shown below ~> TaskHandler[id: 1608; name: POREC:to_pairs_file (697); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/757c0270aa6cf82cc67c6176f36a0a] ~> TaskHandler[id: 1609; name: POREC:to_pairs_file (698); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/c4b35b1608fa24bc1a43189711613a] ~> TaskHandler[id: 1610; name: POREC:to_pairs_file (699); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/0d8d819127efa34d9193c34050344f] ~> TaskHandler[id: 1611; name: POREC:to_pairs_file (700); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/e2692ba4630640c19c5ec04cea549f] ~> TaskHandler[id: 1612; name: POREC:to_pairs_file (701); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/a6e4ee6543e69d635375c8a566caa8] ~> TaskHandler[id: 1613; name: POREC:to_pairs_file (702); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/c83dc33c915058128eeb4e4b41668e] ~> TaskHandler[id: 1614; name: POREC:to_pairs_file (703); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/c3d3ad51c597b4a16454614cc9651d] ~> TaskHandler[id: 1615; name: POREC:to_pairs_file (704); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fff178bb48513f0161c354cc3f5b03] ~> TaskHandler[id: 1616; name: POREC:to_pairs_file (705); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/27e07b3a57ff1b00dbc89442f96ce2] ~> TaskHandler[id: 1617; name: POREC:to_pairs_file (706); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/1dbbe2b0249a1f9dd667c13dbcd2d6] .. remaining tasks omitted. Aug-18 17:23:56.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1607; name: POREC:to_pairs_file (696); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/aae4e440359cbaeeba671f06808ce6] Aug-18 17:24:10.124 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1607; name: POREC:to_pairs_file (696); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9a/aae4e440359cbaeeba671f06808ce6] Aug-18 17:24:10.154 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:24:10.154 [Task submitter] INFO nextflow.Session - [d1/757c02] Submitted process > POREC:to_pairs_file (697) Aug-18 17:25:42.601 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1608; name: POREC:to_pairs_file (697); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d1/757c0270aa6cf82cc67c6176f36a0a] Aug-18 17:25:42.639 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:25:42.639 [Task submitter] INFO nextflow.Session - [57/c4b35b] Submitted process > POREC:to_pairs_file (698) Aug-18 17:27:15.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1609; name: POREC:to_pairs_file (698); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/57/c4b35b1608fa24bc1a43189711613a] Aug-18 17:27:15.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:27:15.777 [Task submitter] INFO nextflow.Session - [3b/0d8d81] Submitted process > POREC:to_pairs_file (699) Aug-18 17:28:07.825 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 207 -- tasks to be submitted are shown below ~> TaskHandler[id: 1611; name: POREC:to_pairs_file (700); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/e2692ba4630640c19c5ec04cea549f] ~> TaskHandler[id: 1612; name: POREC:to_pairs_file (701); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/a6e4ee6543e69d635375c8a566caa8] ~> TaskHandler[id: 1613; name: POREC:to_pairs_file (702); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/c83dc33c915058128eeb4e4b41668e] ~> TaskHandler[id: 1614; name: POREC:to_pairs_file (703); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/c3d3ad51c597b4a16454614cc9651d] ~> TaskHandler[id: 1615; name: POREC:to_pairs_file (704); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fff178bb48513f0161c354cc3f5b03] ~> TaskHandler[id: 1616; name: POREC:to_pairs_file (705); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/27e07b3a57ff1b00dbc89442f96ce2] ~> TaskHandler[id: 1617; name: POREC:to_pairs_file (706); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/1dbbe2b0249a1f9dd667c13dbcd2d6] ~> TaskHandler[id: 1618; name: POREC:to_pairs_file (707); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/602e3174a94c2bc98a91675c4d8735] ~> TaskHandler[id: 1619; name: POREC:to_pairs_file (708); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/3d972aaf980568e4f27179655365b2] ~> TaskHandler[id: 1620; name: POREC:to_pairs_file (709); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/bbce13d1a33c826e30a91f6d3f1e1c] .. remaining tasks omitted. Aug-18 17:28:48.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1610; name: POREC:to_pairs_file (699); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3b/0d8d819127efa34d9193c34050344f] Aug-18 17:28:48.356 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:28:48.356 [Task submitter] INFO nextflow.Session - [e3/e2692b] Submitted process > POREC:to_pairs_file (700) Aug-18 17:28:56.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1611; name: POREC:to_pairs_file (700); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/e2692ba4630640c19c5ec04cea549f] Aug-18 17:30:21.697 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1611; name: POREC:to_pairs_file (700); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/e2692ba4630640c19c5ec04cea549f] Aug-18 17:30:21.706 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:30:21.706 [Task submitter] INFO nextflow.Session - [f9/a6e4ee] Submitted process > POREC:to_pairs_file (701) Aug-18 17:31:54.527 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1612; name: POREC:to_pairs_file (701); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/a6e4ee6543e69d635375c8a566caa8] Aug-18 17:31:54.532 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:31:54.532 [Task submitter] INFO nextflow.Session - [7b/c83dc3] Submitted process > POREC:to_pairs_file (702) Aug-18 17:33:08.610 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 204 -- tasks to be submitted are shown below ~> TaskHandler[id: 1614; name: POREC:to_pairs_file (703); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/c3d3ad51c597b4a16454614cc9651d] ~> TaskHandler[id: 1615; name: POREC:to_pairs_file (704); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fff178bb48513f0161c354cc3f5b03] ~> TaskHandler[id: 1616; name: POREC:to_pairs_file (705); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/27e07b3a57ff1b00dbc89442f96ce2] ~> TaskHandler[id: 1617; name: POREC:to_pairs_file (706); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/1dbbe2b0249a1f9dd667c13dbcd2d6] ~> TaskHandler[id: 1618; name: POREC:to_pairs_file (707); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/602e3174a94c2bc98a91675c4d8735] ~> TaskHandler[id: 1619; name: POREC:to_pairs_file (708); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/3d972aaf980568e4f27179655365b2] ~> TaskHandler[id: 1620; name: POREC:to_pairs_file (709); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/bbce13d1a33c826e30a91f6d3f1e1c] ~> TaskHandler[id: 1621; name: POREC:to_pairs_file (710); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/2832f21deecccd26802ae5ed76f96d] ~> TaskHandler[id: 1622; name: POREC:to_pairs_file (711); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5294895415c0b03dd9bebdfbef7793] ~> TaskHandler[id: 1623; name: POREC:to_pairs_file (712); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/17c2c1a67f48ce28bb060dfcd10a90] .. remaining tasks omitted. Aug-18 17:33:27.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1613; name: POREC:to_pairs_file (702); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/c83dc33c915058128eeb4e4b41668e] Aug-18 17:33:27.710 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:33:27.710 [Task submitter] INFO nextflow.Session - [44/c3d3ad] Submitted process > POREC:to_pairs_file (703) Aug-18 17:33:56.555 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1614; name: POREC:to_pairs_file (703); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/c3d3ad51c597b4a16454614cc9651d] Aug-18 17:35:44.877 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1614; name: POREC:to_pairs_file (703); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/44/c3d3ad51c597b4a16454614cc9651d] Aug-18 17:35:44.888 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:35:44.889 [Task submitter] INFO nextflow.Session - [95/fff178] Submitted process > POREC:to_pairs_file (704) Aug-18 17:37:17.131 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1615; name: POREC:to_pairs_file (704); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/fff178bb48513f0161c354cc3f5b03] Aug-18 17:37:17.173 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:37:17.173 [Task submitter] INFO nextflow.Session - [2f/27e07b] Submitted process > POREC:to_pairs_file (705) Aug-18 17:38:09.236 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 201 -- tasks to be submitted are shown below ~> TaskHandler[id: 1617; name: POREC:to_pairs_file (706); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/1dbbe2b0249a1f9dd667c13dbcd2d6] ~> TaskHandler[id: 1618; name: POREC:to_pairs_file (707); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/602e3174a94c2bc98a91675c4d8735] ~> TaskHandler[id: 1619; name: POREC:to_pairs_file (708); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/3d972aaf980568e4f27179655365b2] ~> TaskHandler[id: 1620; name: POREC:to_pairs_file (709); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/bbce13d1a33c826e30a91f6d3f1e1c] ~> TaskHandler[id: 1621; name: POREC:to_pairs_file (710); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/2832f21deecccd26802ae5ed76f96d] ~> TaskHandler[id: 1622; name: POREC:to_pairs_file (711); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5294895415c0b03dd9bebdfbef7793] ~> TaskHandler[id: 1623; name: POREC:to_pairs_file (712); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/17c2c1a67f48ce28bb060dfcd10a90] ~> TaskHandler[id: 1624; name: POREC:to_pairs_file (713); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/288059280019f8b8b3f378e1a0c098] ~> TaskHandler[id: 1625; name: POREC:to_pairs_file (714); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/891e0191f0ecd7bc568087327c1715] ~> TaskHandler[id: 1626; name: POREC:to_pairs_file (715); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/6acb43d18abca24e59eb2129e7fbcd] .. remaining tasks omitted. Aug-18 17:38:49.928 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1616; name: POREC:to_pairs_file (705); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/27e07b3a57ff1b00dbc89442f96ce2] Aug-18 17:38:49.934 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:38:49.934 [Task submitter] INFO nextflow.Session - [89/1dbbe2] Submitted process > POREC:to_pairs_file (706) Aug-18 17:38:56.636 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1617; name: POREC:to_pairs_file (706); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/1dbbe2b0249a1f9dd667c13dbcd2d6] Aug-18 17:40:19.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1617; name: POREC:to_pairs_file (706); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/89/1dbbe2b0249a1f9dd667c13dbcd2d6] Aug-18 17:40:19.661 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:40:19.662 [Task submitter] INFO nextflow.Session - [ac/602e31] Submitted process > POREC:to_pairs_file (707) Aug-18 17:41:50.149 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1618; name: POREC:to_pairs_file (707); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/602e3174a94c2bc98a91675c4d8735] Aug-18 17:41:50.185 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:41:50.185 [Task submitter] INFO nextflow.Session - [e8/3d972a] Submitted process > POREC:to_pairs_file (708) Aug-18 17:43:09.286 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 198 -- tasks to be submitted are shown below ~> TaskHandler[id: 1620; name: POREC:to_pairs_file (709); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/bbce13d1a33c826e30a91f6d3f1e1c] ~> TaskHandler[id: 1621; name: POREC:to_pairs_file (710); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/2832f21deecccd26802ae5ed76f96d] ~> TaskHandler[id: 1622; name: POREC:to_pairs_file (711); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5294895415c0b03dd9bebdfbef7793] ~> TaskHandler[id: 1623; name: POREC:to_pairs_file (712); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/17c2c1a67f48ce28bb060dfcd10a90] ~> TaskHandler[id: 1624; name: POREC:to_pairs_file (713); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/288059280019f8b8b3f378e1a0c098] ~> TaskHandler[id: 1625; name: POREC:to_pairs_file (714); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/891e0191f0ecd7bc568087327c1715] ~> TaskHandler[id: 1626; name: POREC:to_pairs_file (715); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/6acb43d18abca24e59eb2129e7fbcd] ~> TaskHandler[id: 1627; name: POREC:to_pairs_file (716); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/4e46d4437de138ac2f893764dadb03] ~> TaskHandler[id: 1628; name: POREC:to_pairs_file (717); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/51f8a02868902814cd57c58457d17c] ~> TaskHandler[id: 1629; name: POREC:to_pairs_file (718); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/7c43a285c7111d3bf12be66b9727c9] .. remaining tasks omitted. Aug-18 17:43:21.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1619; name: POREC:to_pairs_file (708); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e8/3d972aaf980568e4f27179655365b2] Aug-18 17:43:21.664 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:43:21.664 [Task submitter] INFO nextflow.Session - [14/bbce13] Submitted process > POREC:to_pairs_file (709) Aug-18 17:43:56.691 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1620; name: POREC:to_pairs_file (709); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/bbce13d1a33c826e30a91f6d3f1e1c] Aug-18 17:44:52.033 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1620; name: POREC:to_pairs_file (709); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/bbce13d1a33c826e30a91f6d3f1e1c] Aug-18 17:44:52.040 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:44:52.040 [Task submitter] INFO nextflow.Session - [3c/2832f2] Submitted process > POREC:to_pairs_file (710) Aug-18 17:46:24.781 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1621; name: POREC:to_pairs_file (710); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3c/2832f21deecccd26802ae5ed76f96d] Aug-18 17:46:24.788 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:46:24.789 [Task submitter] INFO nextflow.Session - [e5/529489] Submitted process > POREC:to_pairs_file (711) Aug-18 17:47:59.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1622; name: POREC:to_pairs_file (711); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e5/5294895415c0b03dd9bebdfbef7793] Aug-18 17:47:59.060 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:47:59.060 [Task submitter] INFO nextflow.Session - [5c/17c2c1] Submitted process > POREC:to_pairs_file (712) Aug-18 17:48:10.071 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 194 -- tasks to be submitted are shown below ~> TaskHandler[id: 1624; name: POREC:to_pairs_file (713); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/288059280019f8b8b3f378e1a0c098] ~> TaskHandler[id: 1625; name: POREC:to_pairs_file (714); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/891e0191f0ecd7bc568087327c1715] ~> TaskHandler[id: 1626; name: POREC:to_pairs_file (715); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/6acb43d18abca24e59eb2129e7fbcd] ~> TaskHandler[id: 1627; name: POREC:to_pairs_file (716); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/4e46d4437de138ac2f893764dadb03] ~> TaskHandler[id: 1628; name: POREC:to_pairs_file (717); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/51f8a02868902814cd57c58457d17c] ~> TaskHandler[id: 1629; name: POREC:to_pairs_file (718); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/7c43a285c7111d3bf12be66b9727c9] ~> TaskHandler[id: 1630; name: POREC:to_pairs_file (719); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fb2a10655367acb00c7f7c0288980c] ~> TaskHandler[id: 1631; name: POREC:to_pairs_file (720); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e7dbd128b836845fb42107bfb3603e] ~> TaskHandler[id: 1632; name: POREC:to_pairs_file (721); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/bbc34df3ff7859a2b9aa23a81cfd68] ~> TaskHandler[id: 1633; name: POREC:to_pairs_file (722); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/dddedce28f5ec2ab0d0914f0678dda] .. remaining tasks omitted. Aug-18 17:48:56.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1623; name: POREC:to_pairs_file (712); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/17c2c1a67f48ce28bb060dfcd10a90] Aug-18 17:49:31.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1623; name: POREC:to_pairs_file (712); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/17c2c1a67f48ce28bb060dfcd10a90] Aug-18 17:49:31.355 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:49:31.355 [Task submitter] INFO nextflow.Session - [cb/288059] Submitted process > POREC:to_pairs_file (713) Aug-18 17:51:05.621 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1624; name: POREC:to_pairs_file (713); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cb/288059280019f8b8b3f378e1a0c098] Aug-18 17:51:05.643 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:51:05.644 [Task submitter] INFO nextflow.Session - [f9/891e01] Submitted process > POREC:to_pairs_file (714) Aug-18 17:52:37.708 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1625; name: POREC:to_pairs_file (714); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f9/891e0191f0ecd7bc568087327c1715] Aug-18 17:52:37.727 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:52:37.727 [Task submitter] INFO nextflow.Session - [f7/6acb43] Submitted process > POREC:to_pairs_file (715) Aug-18 17:53:10.755 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 191 -- tasks to be submitted are shown below ~> TaskHandler[id: 1627; name: POREC:to_pairs_file (716); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/4e46d4437de138ac2f893764dadb03] ~> TaskHandler[id: 1628; name: POREC:to_pairs_file (717); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/51f8a02868902814cd57c58457d17c] ~> TaskHandler[id: 1629; name: POREC:to_pairs_file (718); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/7c43a285c7111d3bf12be66b9727c9] ~> TaskHandler[id: 1630; name: POREC:to_pairs_file (719); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fb2a10655367acb00c7f7c0288980c] ~> TaskHandler[id: 1631; name: POREC:to_pairs_file (720); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e7dbd128b836845fb42107bfb3603e] ~> TaskHandler[id: 1632; name: POREC:to_pairs_file (721); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/bbc34df3ff7859a2b9aa23a81cfd68] ~> TaskHandler[id: 1633; name: POREC:to_pairs_file (722); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/dddedce28f5ec2ab0d0914f0678dda] ~> TaskHandler[id: 1634; name: POREC:to_pairs_file (723); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/409cf2f1a80bbafe25ccbf608722a6] ~> TaskHandler[id: 1635; name: POREC:to_pairs_file (724); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/f2fb7b7698bcba53c1691d902cc391] ~> TaskHandler[id: 1636; name: POREC:to_pairs_file (725); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/ac6ccddd0e6c746f09b886e2c33206] .. remaining tasks omitted. Aug-18 17:53:56.716 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1626; name: POREC:to_pairs_file (715); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/6acb43d18abca24e59eb2129e7fbcd] Aug-18 17:54:10.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1626; name: POREC:to_pairs_file (715); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f7/6acb43d18abca24e59eb2129e7fbcd] Aug-18 17:54:10.889 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:54:10.889 [Task submitter] INFO nextflow.Session - [87/4e46d4] Submitted process > POREC:to_pairs_file (716) Aug-18 17:55:41.140 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1627; name: POREC:to_pairs_file (716); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/4e46d4437de138ac2f893764dadb03] Aug-18 17:55:41.171 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:55:41.171 [Task submitter] INFO nextflow.Session - [62/51f8a0] Submitted process > POREC:to_pairs_file (717) Aug-18 17:57:13.382 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1628; name: POREC:to_pairs_file (717); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/62/51f8a02868902814cd57c58457d17c] Aug-18 17:57:13.419 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:57:13.419 [Task submitter] INFO nextflow.Session - [5d/7c43a2] Submitted process > POREC:to_pairs_file (718) Aug-18 17:58:11.470 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 188 -- tasks to be submitted are shown below ~> TaskHandler[id: 1630; name: POREC:to_pairs_file (719); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fb2a10655367acb00c7f7c0288980c] ~> TaskHandler[id: 1631; name: POREC:to_pairs_file (720); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e7dbd128b836845fb42107bfb3603e] ~> TaskHandler[id: 1632; name: POREC:to_pairs_file (721); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/bbc34df3ff7859a2b9aa23a81cfd68] ~> TaskHandler[id: 1633; name: POREC:to_pairs_file (722); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/dddedce28f5ec2ab0d0914f0678dda] ~> TaskHandler[id: 1634; name: POREC:to_pairs_file (723); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/409cf2f1a80bbafe25ccbf608722a6] ~> TaskHandler[id: 1635; name: POREC:to_pairs_file (724); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/f2fb7b7698bcba53c1691d902cc391] ~> TaskHandler[id: 1636; name: POREC:to_pairs_file (725); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/ac6ccddd0e6c746f09b886e2c33206] ~> TaskHandler[id: 1637; name: POREC:to_pairs_file (726); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/982910880e06328bb29373928dcab5] ~> TaskHandler[id: 1638; name: POREC:to_pairs_file (727); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/2744aa4ebe110167a413b2290f8149] ~> TaskHandler[id: 1639; name: POREC:to_pairs_file (728); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/403da6f5f0b05770d98e0129d07a7a] .. remaining tasks omitted. Aug-18 17:58:46.165 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1629; name: POREC:to_pairs_file (718); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/7c43a285c7111d3bf12be66b9727c9] Aug-18 17:58:46.187 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 17:58:46.187 [Task submitter] INFO nextflow.Session - [22/fb2a10] Submitted process > POREC:to_pairs_file (719) Aug-18 17:58:56.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1630; name: POREC:to_pairs_file (719); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fb2a10655367acb00c7f7c0288980c] Aug-18 18:00:13.775 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1630; name: POREC:to_pairs_file (719); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/fb2a10655367acb00c7f7c0288980c] Aug-18 18:00:13.833 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:00:13.833 [Task submitter] INFO nextflow.Session - [06/e7dbd1] Submitted process > POREC:to_pairs_file (720) Aug-18 18:01:43.057 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1631; name: POREC:to_pairs_file (720); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/e7dbd128b836845fb42107bfb3603e] Aug-18 18:01:43.084 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:01:43.084 [Task submitter] INFO nextflow.Session - [c2/bbc34d] Submitted process > POREC:to_pairs_file (721) Aug-18 18:03:12.147 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 185 -- tasks to be submitted are shown below ~> TaskHandler[id: 1633; name: POREC:to_pairs_file (722); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/dddedce28f5ec2ab0d0914f0678dda] ~> TaskHandler[id: 1634; name: POREC:to_pairs_file (723); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/409cf2f1a80bbafe25ccbf608722a6] ~> TaskHandler[id: 1635; name: POREC:to_pairs_file (724); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/f2fb7b7698bcba53c1691d902cc391] ~> TaskHandler[id: 1636; name: POREC:to_pairs_file (725); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/ac6ccddd0e6c746f09b886e2c33206] ~> TaskHandler[id: 1637; name: POREC:to_pairs_file (726); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/982910880e06328bb29373928dcab5] ~> TaskHandler[id: 1638; name: POREC:to_pairs_file (727); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/2744aa4ebe110167a413b2290f8149] ~> TaskHandler[id: 1639; name: POREC:to_pairs_file (728); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/403da6f5f0b05770d98e0129d07a7a] ~> TaskHandler[id: 1640; name: POREC:to_pairs_file (729); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/5f9f27d113b15497850db86630d71a] ~> TaskHandler[id: 1641; name: POREC:to_pairs_file (730); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/daba570c789d651766393a31147cc8] ~> TaskHandler[id: 1642; name: POREC:to_pairs_file (731); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/893b008ddf4e6c0e40cee1c811a248] .. remaining tasks omitted. Aug-18 18:03:56.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1632; name: POREC:to_pairs_file (721); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/bbc34df3ff7859a2b9aa23a81cfd68] Aug-18 18:03:58.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1632; name: POREC:to_pairs_file (721); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/bbc34df3ff7859a2b9aa23a81cfd68] Aug-18 18:03:58.697 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:03:58.697 [Task submitter] INFO nextflow.Session - [be/dddedc] Submitted process > POREC:to_pairs_file (722) Aug-18 18:05:32.644 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1633; name: POREC:to_pairs_file (722); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/be/dddedce28f5ec2ab0d0914f0678dda] Aug-18 18:05:32.649 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:05:32.649 [Task submitter] INFO nextflow.Session - [1b/409cf2] Submitted process > POREC:to_pairs_file (723) Aug-18 18:07:05.180 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1634; name: POREC:to_pairs_file (723); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/409cf2f1a80bbafe25ccbf608722a6] Aug-18 18:07:05.185 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:07:05.185 [Task submitter] INFO nextflow.Session - [1b/f2fb7b] Submitted process > POREC:to_pairs_file (724) Aug-18 18:08:12.241 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 182 -- tasks to be submitted are shown below ~> TaskHandler[id: 1636; name: POREC:to_pairs_file (725); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/ac6ccddd0e6c746f09b886e2c33206] ~> TaskHandler[id: 1637; name: POREC:to_pairs_file (726); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/982910880e06328bb29373928dcab5] ~> TaskHandler[id: 1638; name: POREC:to_pairs_file (727); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/2744aa4ebe110167a413b2290f8149] ~> TaskHandler[id: 1639; name: POREC:to_pairs_file (728); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/403da6f5f0b05770d98e0129d07a7a] ~> TaskHandler[id: 1640; name: POREC:to_pairs_file (729); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/5f9f27d113b15497850db86630d71a] ~> TaskHandler[id: 1641; name: POREC:to_pairs_file (730); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/daba570c789d651766393a31147cc8] ~> TaskHandler[id: 1642; name: POREC:to_pairs_file (731); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/893b008ddf4e6c0e40cee1c811a248] ~> TaskHandler[id: 1643; name: POREC:to_pairs_file (732); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/69d0296453b8877696be16ecbe7f6d] ~> TaskHandler[id: 1644; name: POREC:to_pairs_file (733); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/ac18441d47f68b6717878655de4279] ~> TaskHandler[id: 1645; name: POREC:to_pairs_file (734); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/61ecc2d2b7f9830b7b28d630ce0ce4] .. remaining tasks omitted. Aug-18 18:08:37.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1635; name: POREC:to_pairs_file (724); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/f2fb7b7698bcba53c1691d902cc391] Aug-18 18:08:37.385 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:08:37.403 [Task submitter] INFO nextflow.Session - [c6/ac6ccd] Submitted process > POREC:to_pairs_file (725) Aug-18 18:08:56.836 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1636; name: POREC:to_pairs_file (725); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/ac6ccddd0e6c746f09b886e2c33206] Aug-18 18:10:10.674 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1636; name: POREC:to_pairs_file (725); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c6/ac6ccddd0e6c746f09b886e2c33206] Aug-18 18:10:10.723 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:10:10.723 [Task submitter] INFO nextflow.Session - [e2/982910] Submitted process > POREC:to_pairs_file (726) Aug-18 18:11:42.330 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1637; name: POREC:to_pairs_file (726); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/982910880e06328bb29373928dcab5] Aug-18 18:11:42.334 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:11:42.334 [Task submitter] INFO nextflow.Session - [af/2744aa] Submitted process > POREC:to_pairs_file (727) Aug-18 18:13:12.396 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 179 -- tasks to be submitted are shown below ~> TaskHandler[id: 1639; name: POREC:to_pairs_file (728); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/403da6f5f0b05770d98e0129d07a7a] ~> TaskHandler[id: 1640; name: POREC:to_pairs_file (729); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/5f9f27d113b15497850db86630d71a] ~> TaskHandler[id: 1641; name: POREC:to_pairs_file (730); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/daba570c789d651766393a31147cc8] ~> TaskHandler[id: 1642; name: POREC:to_pairs_file (731); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/893b008ddf4e6c0e40cee1c811a248] ~> TaskHandler[id: 1643; name: POREC:to_pairs_file (732); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/69d0296453b8877696be16ecbe7f6d] ~> TaskHandler[id: 1644; name: POREC:to_pairs_file (733); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/ac18441d47f68b6717878655de4279] ~> TaskHandler[id: 1645; name: POREC:to_pairs_file (734); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/61ecc2d2b7f9830b7b28d630ce0ce4] ~> TaskHandler[id: 1646; name: POREC:to_pairs_file (735); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/3a683fbb67160d1de29b36ce99f481] ~> TaskHandler[id: 1647; name: POREC:to_pairs_file (736); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/3360dc71591d4b00ce5f1f66bbbe65] ~> TaskHandler[id: 1648; name: POREC:to_pairs_file (737); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/db4ab5bf5cf6842c961949faceefa6] .. remaining tasks omitted. Aug-18 18:13:15.597 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1638; name: POREC:to_pairs_file (727); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/af/2744aa4ebe110167a413b2290f8149] Aug-18 18:13:15.637 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:13:15.644 [Task submitter] INFO nextflow.Session - [43/403da6] Submitted process > POREC:to_pairs_file (728) Aug-18 18:13:56.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1639; name: POREC:to_pairs_file (728); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/403da6f5f0b05770d98e0129d07a7a] Aug-18 18:14:47.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1639; name: POREC:to_pairs_file (728); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/43/403da6f5f0b05770d98e0129d07a7a] Aug-18 18:14:47.596 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:14:47.596 [Task submitter] INFO nextflow.Session - [11/5f9f27] Submitted process > POREC:to_pairs_file (729) Aug-18 18:16:19.295 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1640; name: POREC:to_pairs_file (729); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/11/5f9f27d113b15497850db86630d71a] Aug-18 18:16:19.319 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:16:19.319 [Task submitter] INFO nextflow.Session - [0e/daba57] Submitted process > POREC:to_pairs_file (730) Aug-18 18:17:51.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1641; name: POREC:to_pairs_file (730); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0e/daba570c789d651766393a31147cc8] Aug-18 18:17:51.583 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:17:51.583 [Task submitter] INFO nextflow.Session - [f1/893b00] Submitted process > POREC:to_pairs_file (731) Aug-18 18:18:12.605 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 175 -- tasks to be submitted are shown below ~> TaskHandler[id: 1643; name: POREC:to_pairs_file (732); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/69d0296453b8877696be16ecbe7f6d] ~> TaskHandler[id: 1644; name: POREC:to_pairs_file (733); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/ac18441d47f68b6717878655de4279] ~> TaskHandler[id: 1645; name: POREC:to_pairs_file (734); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/61ecc2d2b7f9830b7b28d630ce0ce4] ~> TaskHandler[id: 1646; name: POREC:to_pairs_file (735); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/3a683fbb67160d1de29b36ce99f481] ~> TaskHandler[id: 1647; name: POREC:to_pairs_file (736); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/3360dc71591d4b00ce5f1f66bbbe65] ~> TaskHandler[id: 1648; name: POREC:to_pairs_file (737); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/db4ab5bf5cf6842c961949faceefa6] ~> TaskHandler[id: 1649; name: POREC:to_pairs_file (738); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/45d14d3d641884c322d56e3aac0b24] ~> TaskHandler[id: 1650; name: POREC:to_pairs_file (739); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/fce6f875927cb072a9d9427eb0be63] ~> TaskHandler[id: 1651; name: POREC:to_pairs_file (740); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/8480bd8c05b0cf074c71d56e368da5] ~> TaskHandler[id: 1652; name: POREC:to_pairs_file (741); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/eb5137ff7bd91ad8a0b6820559375a] .. remaining tasks omitted. Aug-18 18:18:56.935 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1642; name: POREC:to_pairs_file (731); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/893b008ddf4e6c0e40cee1c811a248] Aug-18 18:19:24.526 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1642; name: POREC:to_pairs_file (731); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/893b008ddf4e6c0e40cee1c811a248] Aug-18 18:19:24.530 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:19:24.530 [Task submitter] INFO nextflow.Session - [14/69d029] Submitted process > POREC:to_pairs_file (732) Aug-18 18:20:56.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1643; name: POREC:to_pairs_file (732); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/69d0296453b8877696be16ecbe7f6d] Aug-18 18:20:56.408 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:20:56.408 [Task submitter] INFO nextflow.Session - [48/ac1844] Submitted process > POREC:to_pairs_file (733) Aug-18 18:22:27.107 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1644; name: POREC:to_pairs_file (733); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/48/ac18441d47f68b6717878655de4279] Aug-18 18:22:27.112 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:22:27.112 [Task submitter] INFO nextflow.Session - [5f/61ecc2] Submitted process > POREC:to_pairs_file (734) Aug-18 18:23:13.150 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 172 -- tasks to be submitted are shown below ~> TaskHandler[id: 1646; name: POREC:to_pairs_file (735); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/3a683fbb67160d1de29b36ce99f481] ~> TaskHandler[id: 1647; name: POREC:to_pairs_file (736); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/3360dc71591d4b00ce5f1f66bbbe65] ~> TaskHandler[id: 1648; name: POREC:to_pairs_file (737); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/db4ab5bf5cf6842c961949faceefa6] ~> TaskHandler[id: 1649; name: POREC:to_pairs_file (738); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/45d14d3d641884c322d56e3aac0b24] ~> TaskHandler[id: 1650; name: POREC:to_pairs_file (739); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/fce6f875927cb072a9d9427eb0be63] ~> TaskHandler[id: 1651; name: POREC:to_pairs_file (740); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/8480bd8c05b0cf074c71d56e368da5] ~> TaskHandler[id: 1652; name: POREC:to_pairs_file (741); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/eb5137ff7bd91ad8a0b6820559375a] ~> TaskHandler[id: 1653; name: POREC:to_pairs_file (742); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/a8e01841338b24e4f4013ea3d01f74] ~> TaskHandler[id: 1654; name: POREC:to_pairs_file (743); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/73c799700bf731fb609f66a8c75c7b] ~> TaskHandler[id: 1655; name: POREC:to_pairs_file (744); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/697ddd8ca7cd9b29a888c39254c4d2] .. remaining tasks omitted. Aug-18 18:23:56.992 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1645; name: POREC:to_pairs_file (734); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/61ecc2d2b7f9830b7b28d630ce0ce4] Aug-18 18:24:00.382 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1645; name: POREC:to_pairs_file (734); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5f/61ecc2d2b7f9830b7b28d630ce0ce4] Aug-18 18:24:00.386 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:24:00.386 [Task submitter] INFO nextflow.Session - [77/3a683f] Submitted process > POREC:to_pairs_file (735) Aug-18 18:25:32.207 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1646; name: POREC:to_pairs_file (735); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/77/3a683fbb67160d1de29b36ce99f481] Aug-18 18:25:32.210 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:25:32.210 [Task submitter] INFO nextflow.Session - [b5/3360dc] Submitted process > POREC:to_pairs_file (736) Aug-18 18:27:05.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1647; name: POREC:to_pairs_file (736); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/3360dc71591d4b00ce5f1f66bbbe65] Aug-18 18:27:05.644 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:27:05.644 [Task submitter] INFO nextflow.Session - [31/db4ab5] Submitted process > POREC:to_pairs_file (737) Aug-18 18:28:13.710 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 169 -- tasks to be submitted are shown below ~> TaskHandler[id: 1649; name: POREC:to_pairs_file (738); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/45d14d3d641884c322d56e3aac0b24] ~> TaskHandler[id: 1650; name: POREC:to_pairs_file (739); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/fce6f875927cb072a9d9427eb0be63] ~> TaskHandler[id: 1651; name: POREC:to_pairs_file (740); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/8480bd8c05b0cf074c71d56e368da5] ~> TaskHandler[id: 1652; name: POREC:to_pairs_file (741); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/eb5137ff7bd91ad8a0b6820559375a] ~> TaskHandler[id: 1653; name: POREC:to_pairs_file (742); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/a8e01841338b24e4f4013ea3d01f74] ~> TaskHandler[id: 1654; name: POREC:to_pairs_file (743); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/73c799700bf731fb609f66a8c75c7b] ~> TaskHandler[id: 1655; name: POREC:to_pairs_file (744); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/697ddd8ca7cd9b29a888c39254c4d2] ~> TaskHandler[id: 1656; name: POREC:to_pairs_file (745); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/9619a1fbbc6545d52bf72b358b8cfc] ~> TaskHandler[id: 1657; name: POREC:to_pairs_file (746); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/19058652b0ed40f42e89a760938640] ~> TaskHandler[id: 1658; name: POREC:to_pairs_file (747); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/85d3739475394cf0420afe3d9de744] .. remaining tasks omitted. Aug-18 18:28:37.746 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1648; name: POREC:to_pairs_file (737); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/31/db4ab5bf5cf6842c961949faceefa6] Aug-18 18:28:37.750 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:28:37.750 [Task submitter] INFO nextflow.Session - [5e/e20ae6] Submitted process > POREC:to_pairs_file (837) Aug-18 18:28:57.076 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1748; name: POREC:to_pairs_file (837); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/e20ae6f0856236577ca7e12b1b4681] Aug-18 18:30:10.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1748; name: POREC:to_pairs_file (837); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5e/e20ae6f0856236577ca7e12b1b4681] Aug-18 18:30:10.206 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:30:10.207 [Task submitter] INFO nextflow.Session - [09/45d14d] Submitted process > POREC:to_pairs_file (738) Aug-18 18:31:43.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1649; name: POREC:to_pairs_file (738); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/45d14d3d641884c322d56e3aac0b24] Aug-18 18:31:43.466 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:31:43.466 [Task submitter] INFO nextflow.Session - [74/fce6f8] Submitted process > POREC:to_pairs_file (739) Aug-18 18:33:14.532 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 166 -- tasks to be submitted are shown below ~> TaskHandler[id: 1651; name: POREC:to_pairs_file (740); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/8480bd8c05b0cf074c71d56e368da5] ~> TaskHandler[id: 1652; name: POREC:to_pairs_file (741); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/eb5137ff7bd91ad8a0b6820559375a] ~> TaskHandler[id: 1653; name: POREC:to_pairs_file (742); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/a8e01841338b24e4f4013ea3d01f74] ~> TaskHandler[id: 1654; name: POREC:to_pairs_file (743); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/73c799700bf731fb609f66a8c75c7b] ~> TaskHandler[id: 1655; name: POREC:to_pairs_file (744); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/697ddd8ca7cd9b29a888c39254c4d2] ~> TaskHandler[id: 1656; name: POREC:to_pairs_file (745); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/9619a1fbbc6545d52bf72b358b8cfc] ~> TaskHandler[id: 1657; name: POREC:to_pairs_file (746); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/19058652b0ed40f42e89a760938640] ~> TaskHandler[id: 1658; name: POREC:to_pairs_file (747); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/85d3739475394cf0420afe3d9de744] ~> TaskHandler[id: 1659; name: POREC:to_pairs_file (748); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/629356f198c15f888c806377874f90] ~> TaskHandler[id: 1660; name: POREC:to_pairs_file (749); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/2936bb32e587a6544383b6aa2c2eae] .. remaining tasks omitted. Aug-18 18:33:15.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1650; name: POREC:to_pairs_file (739); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/74/fce6f875927cb072a9d9427eb0be63] Aug-18 18:33:15.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:33:15.871 [Task submitter] INFO nextflow.Session - [6a/8480bd] Submitted process > POREC:to_pairs_file (740) Aug-18 18:33:57.095 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1651; name: POREC:to_pairs_file (740); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/8480bd8c05b0cf074c71d56e368da5] Aug-18 18:34:47.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1651; name: POREC:to_pairs_file (740); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6a/8480bd8c05b0cf074c71d56e368da5] Aug-18 18:34:47.368 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:34:47.368 [Task submitter] INFO nextflow.Session - [c2/eb5137] Submitted process > POREC:to_pairs_file (741) Aug-18 18:36:20.412 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1652; name: POREC:to_pairs_file (741); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/eb5137ff7bd91ad8a0b6820559375a] Aug-18 18:36:20.448 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:36:20.448 [Task submitter] INFO nextflow.Session - [f5/a8e018] Submitted process > POREC:to_pairs_file (742) Aug-18 18:37:54.045 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1653; name: POREC:to_pairs_file (742); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f5/a8e01841338b24e4f4013ea3d01f74] Aug-18 18:37:54.049 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:37:54.049 [Task submitter] INFO nextflow.Session - [60/73c799] Submitted process > POREC:to_pairs_file (743) Aug-18 18:38:15.069 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 162 -- tasks to be submitted are shown below ~> TaskHandler[id: 1655; name: POREC:to_pairs_file (744); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/697ddd8ca7cd9b29a888c39254c4d2] ~> TaskHandler[id: 1656; name: POREC:to_pairs_file (745); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/9619a1fbbc6545d52bf72b358b8cfc] ~> TaskHandler[id: 1657; name: POREC:to_pairs_file (746); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/19058652b0ed40f42e89a760938640] ~> TaskHandler[id: 1658; name: POREC:to_pairs_file (747); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/85d3739475394cf0420afe3d9de744] ~> TaskHandler[id: 1659; name: POREC:to_pairs_file (748); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/629356f198c15f888c806377874f90] ~> TaskHandler[id: 1660; name: POREC:to_pairs_file (749); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/2936bb32e587a6544383b6aa2c2eae] ~> TaskHandler[id: 1661; name: POREC:to_pairs_file (750); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/7f22d020cada5b0b91d38f30dc590c] ~> TaskHandler[id: 1662; name: POREC:to_pairs_file (751); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/98f135dbc52195d516983ab0c2abbd] ~> TaskHandler[id: 1663; name: POREC:to_pairs_file (752); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/fbdb6c0f49b74ae92648c5f649df38] ~> TaskHandler[id: 1664; name: POREC:to_pairs_file (753); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4c78c867f703acaeb6f6adc7add37f] .. remaining tasks omitted. Aug-18 18:38:57.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1654; name: POREC:to_pairs_file (743); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/73c799700bf731fb609f66a8c75c7b] Aug-18 18:39:26.173 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1654; name: POREC:to_pairs_file (743); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/60/73c799700bf731fb609f66a8c75c7b] Aug-18 18:39:26.178 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:39:26.178 [Task submitter] INFO nextflow.Session - [bf/697ddd] Submitted process > POREC:to_pairs_file (744) Aug-18 18:41:02.004 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1655; name: POREC:to_pairs_file (744); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/697ddd8ca7cd9b29a888c39254c4d2] Aug-18 18:41:02.008 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:41:02.008 [Task submitter] INFO nextflow.Session - [25/9619a1] Submitted process > POREC:to_pairs_file (745) Aug-18 18:42:33.592 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1656; name: POREC:to_pairs_file (745); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/25/9619a1fbbc6545d52bf72b358b8cfc] Aug-18 18:42:33.630 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:42:33.630 [Task submitter] INFO nextflow.Session - [9f/190586] Submitted process > POREC:to_pairs_file (746) Aug-18 18:43:15.666 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 159 -- tasks to be submitted are shown below ~> TaskHandler[id: 1658; name: POREC:to_pairs_file (747); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/85d3739475394cf0420afe3d9de744] ~> TaskHandler[id: 1659; name: POREC:to_pairs_file (748); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/629356f198c15f888c806377874f90] ~> TaskHandler[id: 1660; name: POREC:to_pairs_file (749); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/2936bb32e587a6544383b6aa2c2eae] ~> TaskHandler[id: 1661; name: POREC:to_pairs_file (750); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/7f22d020cada5b0b91d38f30dc590c] ~> TaskHandler[id: 1662; name: POREC:to_pairs_file (751); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/98f135dbc52195d516983ab0c2abbd] ~> TaskHandler[id: 1663; name: POREC:to_pairs_file (752); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/fbdb6c0f49b74ae92648c5f649df38] ~> TaskHandler[id: 1664; name: POREC:to_pairs_file (753); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4c78c867f703acaeb6f6adc7add37f] ~> TaskHandler[id: 1665; name: POREC:to_pairs_file (754); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/ddcc50ac106904db2cddb69a14349d] ~> TaskHandler[id: 1666; name: POREC:to_pairs_file (755); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4a44f53356421e995c50d27ef1cd3e] ~> TaskHandler[id: 1667; name: POREC:to_pairs_file (756); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/04a74949c8e0b4f1539e11a6f006b6] .. remaining tasks omitted. Aug-18 18:43:57.205 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1657; name: POREC:to_pairs_file (746); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/19058652b0ed40f42e89a760938640] Aug-18 18:44:06.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1657; name: POREC:to_pairs_file (746); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9f/19058652b0ed40f42e89a760938640] Aug-18 18:44:06.845 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:44:06.846 [Task submitter] INFO nextflow.Session - [59/85d373] Submitted process > POREC:to_pairs_file (747) Aug-18 18:45:41.457 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1658; name: POREC:to_pairs_file (747); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/85d3739475394cf0420afe3d9de744] Aug-18 18:45:41.462 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:45:41.462 [Task submitter] INFO nextflow.Session - [cd/629356] Submitted process > POREC:to_pairs_file (748) Aug-18 18:47:15.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1659; name: POREC:to_pairs_file (748); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/629356f198c15f888c806377874f90] Aug-18 18:47:15.828 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:47:15.828 [Task submitter] INFO nextflow.Session - [d6/2936bb] Submitted process > POREC:to_pairs_file (749) Aug-18 18:48:15.871 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 156 -- tasks to be submitted are shown below ~> TaskHandler[id: 1661; name: POREC:to_pairs_file (750); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/7f22d020cada5b0b91d38f30dc590c] ~> TaskHandler[id: 1662; name: POREC:to_pairs_file (751); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/98f135dbc52195d516983ab0c2abbd] ~> TaskHandler[id: 1663; name: POREC:to_pairs_file (752); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/fbdb6c0f49b74ae92648c5f649df38] ~> TaskHandler[id: 1664; name: POREC:to_pairs_file (753); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4c78c867f703acaeb6f6adc7add37f] ~> TaskHandler[id: 1665; name: POREC:to_pairs_file (754); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/ddcc50ac106904db2cddb69a14349d] ~> TaskHandler[id: 1666; name: POREC:to_pairs_file (755); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4a44f53356421e995c50d27ef1cd3e] ~> TaskHandler[id: 1667; name: POREC:to_pairs_file (756); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/04a74949c8e0b4f1539e11a6f006b6] ~> TaskHandler[id: 1668; name: POREC:to_pairs_file (757); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/8c666c1f8800f8a2305c212bebd821] ~> TaskHandler[id: 1669; name: POREC:to_pairs_file (758); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/dca3aa8015d28db279d99eec7faf06] ~> TaskHandler[id: 1670; name: POREC:to_pairs_file (759); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/a95d6fe70cc5cfad5048e9bdccbbc6] .. remaining tasks omitted. Aug-18 18:48:51.787 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1660; name: POREC:to_pairs_file (749); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d6/2936bb32e587a6544383b6aa2c2eae] Aug-18 18:48:51.793 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:48:51.794 [Task submitter] INFO nextflow.Session - [7b/7f22d0] Submitted process > POREC:to_pairs_file (750) Aug-18 18:48:57.241 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1661; name: POREC:to_pairs_file (750); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/7f22d020cada5b0b91d38f30dc590c] Aug-18 18:50:23.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1661; name: POREC:to_pairs_file (750); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7b/7f22d020cada5b0b91d38f30dc590c] Aug-18 18:50:23.814 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:50:23.814 [Task submitter] INFO nextflow.Session - [9b/98f135] Submitted process > POREC:to_pairs_file (751) Aug-18 18:51:56.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1662; name: POREC:to_pairs_file (751); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/98f135dbc52195d516983ab0c2abbd] Aug-18 18:51:56.198 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:51:56.198 [Task submitter] INFO nextflow.Session - [c3/fbdb6c] Submitted process > POREC:to_pairs_file (752) Aug-18 18:53:16.249 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 153 -- tasks to be submitted are shown below ~> TaskHandler[id: 1664; name: POREC:to_pairs_file (753); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4c78c867f703acaeb6f6adc7add37f] ~> TaskHandler[id: 1665; name: POREC:to_pairs_file (754); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/ddcc50ac106904db2cddb69a14349d] ~> TaskHandler[id: 1666; name: POREC:to_pairs_file (755); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4a44f53356421e995c50d27ef1cd3e] ~> TaskHandler[id: 1667; name: POREC:to_pairs_file (756); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/04a74949c8e0b4f1539e11a6f006b6] ~> TaskHandler[id: 1668; name: POREC:to_pairs_file (757); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/8c666c1f8800f8a2305c212bebd821] ~> TaskHandler[id: 1669; name: POREC:to_pairs_file (758); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/dca3aa8015d28db279d99eec7faf06] ~> TaskHandler[id: 1670; name: POREC:to_pairs_file (759); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/a95d6fe70cc5cfad5048e9bdccbbc6] ~> TaskHandler[id: 1671; name: POREC:to_pairs_file (760); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/5e3eb5eeb01def034a09ca5926babf] ~> TaskHandler[id: 1672; name: POREC:to_pairs_file (761); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/cadb8cc039a4672acd16440ff4ada0] ~> TaskHandler[id: 1673; name: POREC:to_pairs_file (762); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/4a728732812521dffa40c4e5d90eb1] .. remaining tasks omitted. Aug-18 18:53:28.277 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1663; name: POREC:to_pairs_file (752); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/fbdb6c0f49b74ae92648c5f649df38] Aug-18 18:53:28.281 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:53:28.281 [Task submitter] INFO nextflow.Session - [27/4c78c8] Submitted process > POREC:to_pairs_file (753) Aug-18 18:53:57.252 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1664; name: POREC:to_pairs_file (753); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4c78c867f703acaeb6f6adc7add37f] Aug-18 18:55:01.604 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1664; name: POREC:to_pairs_file (753); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/4c78c867f703acaeb6f6adc7add37f] Aug-18 18:55:01.609 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:55:01.609 [Task submitter] INFO nextflow.Session - [8d/ddcc50] Submitted process > POREC:to_pairs_file (754) Aug-18 18:56:34.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1665; name: POREC:to_pairs_file (754); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/ddcc50ac106904db2cddb69a14349d] Aug-18 18:56:34.377 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:56:34.377 [Task submitter] INFO nextflow.Session - [ed/4a44f5] Submitted process > POREC:to_pairs_file (755) Aug-18 18:58:05.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1666; name: POREC:to_pairs_file (755); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4a44f53356421e995c50d27ef1cd3e] Aug-18 18:58:05.700 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:58:05.700 [Task submitter] INFO nextflow.Session - [b6/04a749] Submitted process > POREC:to_pairs_file (756) Aug-18 18:58:16.709 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 149 -- tasks to be submitted are shown below ~> TaskHandler[id: 1668; name: POREC:to_pairs_file (757); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/8c666c1f8800f8a2305c212bebd821] ~> TaskHandler[id: 1669; name: POREC:to_pairs_file (758); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/dca3aa8015d28db279d99eec7faf06] ~> TaskHandler[id: 1670; name: POREC:to_pairs_file (759); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/a95d6fe70cc5cfad5048e9bdccbbc6] ~> TaskHandler[id: 1671; name: POREC:to_pairs_file (760); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/5e3eb5eeb01def034a09ca5926babf] ~> TaskHandler[id: 1672; name: POREC:to_pairs_file (761); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/cadb8cc039a4672acd16440ff4ada0] ~> TaskHandler[id: 1673; name: POREC:to_pairs_file (762); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/4a728732812521dffa40c4e5d90eb1] ~> TaskHandler[id: 1674; name: POREC:to_pairs_file (763); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/1af82383185f9797b6a487c40428a5] ~> TaskHandler[id: 1675; name: POREC:to_pairs_file (764); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8b3b3505147e7b43fa90153029bfb8] ~> TaskHandler[id: 1676; name: POREC:to_pairs_file (765); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/892bc67e739f4cb77994209e521779] ~> TaskHandler[id: 1677; name: POREC:to_pairs_file (766); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/e0d3d3f87c5596089fbd21ed026300] .. remaining tasks omitted. Aug-18 18:58:57.330 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1667; name: POREC:to_pairs_file (756); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/04a74949c8e0b4f1539e11a6f006b6] Aug-18 18:59:37.863 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1667; name: POREC:to_pairs_file (756); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b6/04a74949c8e0b4f1539e11a6f006b6] Aug-18 18:59:37.868 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 18:59:37.868 [Task submitter] INFO nextflow.Session - [6e/8c666c] Submitted process > POREC:to_pairs_file (757) Aug-18 19:01:11.147 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1668; name: POREC:to_pairs_file (757); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/8c666c1f8800f8a2305c212bebd821] Aug-18 19:01:11.188 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:01:11.188 [Task submitter] INFO nextflow.Session - [65/dca3aa] Submitted process > POREC:to_pairs_file (758) Aug-18 19:02:44.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1669; name: POREC:to_pairs_file (758); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/dca3aa8015d28db279d99eec7faf06] Aug-18 19:02:44.749 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:02:44.749 [Task submitter] INFO nextflow.Session - [59/a95d6f] Submitted process > POREC:to_pairs_file (759) Aug-18 19:03:16.777 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 146 -- tasks to be submitted are shown below ~> TaskHandler[id: 1671; name: POREC:to_pairs_file (760); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/5e3eb5eeb01def034a09ca5926babf] ~> TaskHandler[id: 1672; name: POREC:to_pairs_file (761); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/cadb8cc039a4672acd16440ff4ada0] ~> TaskHandler[id: 1673; name: POREC:to_pairs_file (762); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/4a728732812521dffa40c4e5d90eb1] ~> TaskHandler[id: 1674; name: POREC:to_pairs_file (763); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/1af82383185f9797b6a487c40428a5] ~> TaskHandler[id: 1675; name: POREC:to_pairs_file (764); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8b3b3505147e7b43fa90153029bfb8] ~> TaskHandler[id: 1676; name: POREC:to_pairs_file (765); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/892bc67e739f4cb77994209e521779] ~> TaskHandler[id: 1677; name: POREC:to_pairs_file (766); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/e0d3d3f87c5596089fbd21ed026300] ~> TaskHandler[id: 1678; name: POREC:to_pairs_file (767); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/a18925be7e1f8b0fbdb536324a562c] ~> TaskHandler[id: 1679; name: POREC:to_pairs_file (768); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/f914b352765a16af848810b8435456] ~> TaskHandler[id: 1680; name: POREC:to_pairs_file (769); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/7ff083e54e10ffee08d079d5390ad0] .. remaining tasks omitted. Aug-18 19:03:57.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1670; name: POREC:to_pairs_file (759); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/a95d6fe70cc5cfad5048e9bdccbbc6] Aug-18 19:04:18.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1670; name: POREC:to_pairs_file (759); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/a95d6fe70cc5cfad5048e9bdccbbc6] Aug-18 19:04:18.335 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:04:18.335 [Task submitter] INFO nextflow.Session - [bb/5e3eb5] Submitted process > POREC:to_pairs_file (760) Aug-18 19:05:50.973 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1671; name: POREC:to_pairs_file (760); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/5e3eb5eeb01def034a09ca5926babf] Aug-18 19:05:50.991 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:05:50.991 [Task submitter] INFO nextflow.Session - [bf/cadb8c] Submitted process > POREC:to_pairs_file (761) Aug-18 19:07:26.278 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1672; name: POREC:to_pairs_file (761); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/cadb8cc039a4672acd16440ff4ada0] Aug-18 19:07:26.317 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:07:26.317 [Task submitter] INFO nextflow.Session - [08/4a7287] Submitted process > POREC:to_pairs_file (762) Aug-18 19:08:17.347 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 143 -- tasks to be submitted are shown below ~> TaskHandler[id: 1674; name: POREC:to_pairs_file (763); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/1af82383185f9797b6a487c40428a5] ~> TaskHandler[id: 1675; name: POREC:to_pairs_file (764); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8b3b3505147e7b43fa90153029bfb8] ~> TaskHandler[id: 1676; name: POREC:to_pairs_file (765); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/892bc67e739f4cb77994209e521779] ~> TaskHandler[id: 1677; name: POREC:to_pairs_file (766); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/e0d3d3f87c5596089fbd21ed026300] ~> TaskHandler[id: 1678; name: POREC:to_pairs_file (767); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/a18925be7e1f8b0fbdb536324a562c] ~> TaskHandler[id: 1679; name: POREC:to_pairs_file (768); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/f914b352765a16af848810b8435456] ~> TaskHandler[id: 1680; name: POREC:to_pairs_file (769); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/7ff083e54e10ffee08d079d5390ad0] ~> TaskHandler[id: 1681; name: POREC:to_pairs_file (770); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/bea2cf634b58eff226d59bd11ce8ae] ~> TaskHandler[id: 1682; name: POREC:to_pairs_file (771); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2434043a4bae96b91bd3cf215f116a] ~> TaskHandler[id: 1683; name: POREC:to_pairs_file (772); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24473b80724730e68071981f199438] .. remaining tasks omitted. Aug-18 19:08:57.395 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1673; name: POREC:to_pairs_file (762); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/4a728732812521dffa40c4e5d90eb1] Aug-18 19:08:58.346 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1673; name: POREC:to_pairs_file (762); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/08/4a728732812521dffa40c4e5d90eb1] Aug-18 19:08:58.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:08:58.379 [Task submitter] INFO nextflow.Session - [ee/1af823] Submitted process > POREC:to_pairs_file (763) Aug-18 19:10:30.427 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1674; name: POREC:to_pairs_file (763); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/1af82383185f9797b6a487c40428a5] Aug-18 19:10:30.432 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:10:30.432 [Task submitter] INFO nextflow.Session - [5c/8b3b35] Submitted process > POREC:to_pairs_file (764) Aug-18 19:12:02.828 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1675; name: POREC:to_pairs_file (764); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5c/8b3b3505147e7b43fa90153029bfb8] Aug-18 19:12:02.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:12:02.871 [Task submitter] INFO nextflow.Session - [db/892bc6] Submitted process > POREC:to_pairs_file (765) Aug-18 19:13:17.913 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 140 -- tasks to be submitted are shown below ~> TaskHandler[id: 1677; name: POREC:to_pairs_file (766); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/e0d3d3f87c5596089fbd21ed026300] ~> TaskHandler[id: 1678; name: POREC:to_pairs_file (767); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/a18925be7e1f8b0fbdb536324a562c] ~> TaskHandler[id: 1679; name: POREC:to_pairs_file (768); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/f914b352765a16af848810b8435456] ~> TaskHandler[id: 1680; name: POREC:to_pairs_file (769); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/7ff083e54e10ffee08d079d5390ad0] ~> TaskHandler[id: 1681; name: POREC:to_pairs_file (770); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/bea2cf634b58eff226d59bd11ce8ae] ~> TaskHandler[id: 1682; name: POREC:to_pairs_file (771); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2434043a4bae96b91bd3cf215f116a] ~> TaskHandler[id: 1683; name: POREC:to_pairs_file (772); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24473b80724730e68071981f199438] ~> TaskHandler[id: 1684; name: POREC:to_pairs_file (773); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/9db379b8f616213dd17cb5fb89c86d] ~> TaskHandler[id: 1685; name: POREC:to_pairs_file (774); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/5a353525d38c5f68d4251369b4025a] ~> TaskHandler[id: 1686; name: POREC:to_pairs_file (775); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/55eae46df222fc36c4865634cda7f9] .. remaining tasks omitted. Aug-18 19:13:35.696 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1676; name: POREC:to_pairs_file (765); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/892bc67e739f4cb77994209e521779] Aug-18 19:13:35.700 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:13:35.700 [Task submitter] INFO nextflow.Session - [5d/e0d3d3] Submitted process > POREC:to_pairs_file (766) Aug-18 19:13:57.440 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1677; name: POREC:to_pairs_file (766); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/e0d3d3f87c5596089fbd21ed026300] Aug-18 19:15:07.670 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1677; name: POREC:to_pairs_file (766); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/e0d3d3f87c5596089fbd21ed026300] Aug-18 19:15:07.687 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:15:07.687 [Task submitter] INFO nextflow.Session - [83/a18925] Submitted process > POREC:to_pairs_file (767) Aug-18 19:16:41.075 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1678; name: POREC:to_pairs_file (767); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/83/a18925be7e1f8b0fbdb536324a562c] Aug-18 19:16:41.080 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:16:41.080 [Task submitter] INFO nextflow.Session - [d0/f914b3] Submitted process > POREC:to_pairs_file (768) Aug-18 19:18:14.206 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1679; name: POREC:to_pairs_file (768); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/d0/f914b352765a16af848810b8435456] Aug-18 19:18:14.240 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:18:14.240 [Task submitter] INFO nextflow.Session - [54/7ff083] Submitted process > POREC:to_pairs_file (769) Aug-18 19:18:18.244 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 136 -- tasks to be submitted are shown below ~> TaskHandler[id: 1681; name: POREC:to_pairs_file (770); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/bea2cf634b58eff226d59bd11ce8ae] ~> TaskHandler[id: 1682; name: POREC:to_pairs_file (771); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2434043a4bae96b91bd3cf215f116a] ~> TaskHandler[id: 1683; name: POREC:to_pairs_file (772); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24473b80724730e68071981f199438] ~> TaskHandler[id: 1684; name: POREC:to_pairs_file (773); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/9db379b8f616213dd17cb5fb89c86d] ~> TaskHandler[id: 1685; name: POREC:to_pairs_file (774); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/5a353525d38c5f68d4251369b4025a] ~> TaskHandler[id: 1686; name: POREC:to_pairs_file (775); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/55eae46df222fc36c4865634cda7f9] ~> TaskHandler[id: 1687; name: POREC:to_pairs_file (776); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/c6e13d01ef77fbfc34de954342d26b] ~> TaskHandler[id: 1688; name: POREC:to_pairs_file (777); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/707befe3cd22d7ef4ffd3b919b916b] ~> TaskHandler[id: 1689; name: POREC:to_pairs_file (778); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/bf6d5d2e05b61b78d05f750317b3e0] ~> TaskHandler[id: 1690; name: POREC:to_pairs_file (779); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/c5b22a315fca307097f9256fc57a93] .. remaining tasks omitted. Aug-18 19:18:57.499 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1680; name: POREC:to_pairs_file (769); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/7ff083e54e10ffee08d079d5390ad0] Aug-18 19:19:47.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1680; name: POREC:to_pairs_file (769); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/54/7ff083e54e10ffee08d079d5390ad0] Aug-18 19:19:47.663 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:19:47.663 [Task submitter] INFO nextflow.Session - [24/bea2cf] Submitted process > POREC:to_pairs_file (770) Aug-18 19:21:18.259 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1681; name: POREC:to_pairs_file (770); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/24/bea2cf634b58eff226d59bd11ce8ae] Aug-18 19:21:18.298 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:21:18.298 [Task submitter] INFO nextflow.Session - [76/243404] Submitted process > POREC:to_pairs_file (771) Aug-18 19:22:52.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1682; name: POREC:to_pairs_file (771); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/76/2434043a4bae96b91bd3cf215f116a] Aug-18 19:22:52.111 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:22:52.111 [Task submitter] INFO nextflow.Session - [63/24473b] Submitted process > POREC:to_pairs_file (772) Aug-18 19:23:19.130 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 133 -- tasks to be submitted are shown below ~> TaskHandler[id: 1684; name: POREC:to_pairs_file (773); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/9db379b8f616213dd17cb5fb89c86d] ~> TaskHandler[id: 1685; name: POREC:to_pairs_file (774); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/5a353525d38c5f68d4251369b4025a] ~> TaskHandler[id: 1686; name: POREC:to_pairs_file (775); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/55eae46df222fc36c4865634cda7f9] ~> TaskHandler[id: 1687; name: POREC:to_pairs_file (776); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/c6e13d01ef77fbfc34de954342d26b] ~> TaskHandler[id: 1688; name: POREC:to_pairs_file (777); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/707befe3cd22d7ef4ffd3b919b916b] ~> TaskHandler[id: 1689; name: POREC:to_pairs_file (778); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/bf6d5d2e05b61b78d05f750317b3e0] ~> TaskHandler[id: 1690; name: POREC:to_pairs_file (779); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/c5b22a315fca307097f9256fc57a93] ~> TaskHandler[id: 1691; name: POREC:to_pairs_file (780); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/1c84cce41018e292d096c0a1c13adf] ~> TaskHandler[id: 1692; name: POREC:to_pairs_file (781); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ee8f1b8ec092e6224d79f4f7dad4cf] ~> TaskHandler[id: 1693; name: POREC:to_pairs_file (782); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/b74cc92925ab548d70051fd6e747c4] .. remaining tasks omitted. Aug-18 19:23:57.532 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1683; name: POREC:to_pairs_file (772); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24473b80724730e68071981f199438] Aug-18 19:24:23.797 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1683; name: POREC:to_pairs_file (772); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/63/24473b80724730e68071981f199438] Aug-18 19:24:23.829 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:24:23.829 [Task submitter] INFO nextflow.Session - [dc/9db379] Submitted process > POREC:to_pairs_file (773) Aug-18 19:25:57.262 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1684; name: POREC:to_pairs_file (773); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/dc/9db379b8f616213dd17cb5fb89c86d] Aug-18 19:25:57.358 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:25:57.358 [Task submitter] INFO nextflow.Session - [f2/5a3535] Submitted process > POREC:to_pairs_file (774) Aug-18 19:27:28.569 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1685; name: POREC:to_pairs_file (774); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/5a353525d38c5f68d4251369b4025a] Aug-18 19:27:28.576 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:27:28.577 [Task submitter] INFO nextflow.Session - [ca/55eae4] Submitted process > POREC:to_pairs_file (775) Aug-18 19:28:19.622 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 130 -- tasks to be submitted are shown below ~> TaskHandler[id: 1687; name: POREC:to_pairs_file (776); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/c6e13d01ef77fbfc34de954342d26b] ~> TaskHandler[id: 1688; name: POREC:to_pairs_file (777); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/707befe3cd22d7ef4ffd3b919b916b] ~> TaskHandler[id: 1689; name: POREC:to_pairs_file (778); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/bf6d5d2e05b61b78d05f750317b3e0] ~> TaskHandler[id: 1690; name: POREC:to_pairs_file (779); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/c5b22a315fca307097f9256fc57a93] ~> TaskHandler[id: 1691; name: POREC:to_pairs_file (780); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/1c84cce41018e292d096c0a1c13adf] ~> TaskHandler[id: 1692; name: POREC:to_pairs_file (781); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ee8f1b8ec092e6224d79f4f7dad4cf] ~> TaskHandler[id: 1693; name: POREC:to_pairs_file (782); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/b74cc92925ab548d70051fd6e747c4] ~> TaskHandler[id: 1694; name: POREC:to_pairs_file (783); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/ed377558bd5adfc6fb6dcb297d9639] ~> TaskHandler[id: 1695; name: POREC:to_pairs_file (784); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/eaf156cb6d333fa0c37dbcbda733a0] ~> TaskHandler[id: 1696; name: POREC:to_pairs_file (785); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/310a1deb81fb0eb4baaa6af52c20be] .. remaining tasks omitted. Aug-18 19:28:57.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1686; name: POREC:to_pairs_file (775); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/55eae46df222fc36c4865634cda7f9] Aug-18 19:28:59.616 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1686; name: POREC:to_pairs_file (775); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/55eae46df222fc36c4865634cda7f9] Aug-18 19:28:59.620 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:28:59.620 [Task submitter] INFO nextflow.Session - [1e/c6e13d] Submitted process > POREC:to_pairs_file (776) Aug-18 19:30:32.975 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1687; name: POREC:to_pairs_file (776); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1e/c6e13d01ef77fbfc34de954342d26b] Aug-18 19:30:33.010 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:30:33.010 [Task submitter] INFO nextflow.Session - [da/707bef] Submitted process > POREC:to_pairs_file (777) Aug-18 19:32:04.084 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1688; name: POREC:to_pairs_file (777); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/707befe3cd22d7ef4ffd3b919b916b] Aug-18 19:32:04.144 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:32:04.144 [Task submitter] INFO nextflow.Session - [b0/bf6d5d] Submitted process > POREC:to_pairs_file (778) Aug-18 19:33:20.204 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 127 -- tasks to be submitted are shown below ~> TaskHandler[id: 1690; name: POREC:to_pairs_file (779); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/c5b22a315fca307097f9256fc57a93] ~> TaskHandler[id: 1691; name: POREC:to_pairs_file (780); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/1c84cce41018e292d096c0a1c13adf] ~> TaskHandler[id: 1692; name: POREC:to_pairs_file (781); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ee8f1b8ec092e6224d79f4f7dad4cf] ~> TaskHandler[id: 1693; name: POREC:to_pairs_file (782); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/b74cc92925ab548d70051fd6e747c4] ~> TaskHandler[id: 1694; name: POREC:to_pairs_file (783); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/ed377558bd5adfc6fb6dcb297d9639] ~> TaskHandler[id: 1695; name: POREC:to_pairs_file (784); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/eaf156cb6d333fa0c37dbcbda733a0] ~> TaskHandler[id: 1696; name: POREC:to_pairs_file (785); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/310a1deb81fb0eb4baaa6af52c20be] ~> TaskHandler[id: 1697; name: POREC:to_pairs_file (786); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/6b6d2791cf08e0914c55893a029013] ~> TaskHandler[id: 1698; name: POREC:to_pairs_file (787); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/c4466296b21db2bbd949917d31d9d3] ~> TaskHandler[id: 1699; name: POREC:to_pairs_file (788); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/b03f86d066fc9f7b6753a1c492c17f] .. remaining tasks omitted. Aug-18 19:33:38.364 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1689; name: POREC:to_pairs_file (778); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/bf6d5d2e05b61b78d05f750317b3e0] Aug-18 19:33:38.395 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:33:38.395 [Task submitter] INFO nextflow.Session - [db/c5b22a] Submitted process > POREC:to_pairs_file (779) Aug-18 19:33:57.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1690; name: POREC:to_pairs_file (779); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/c5b22a315fca307097f9256fc57a93] Aug-18 19:35:12.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1690; name: POREC:to_pairs_file (779); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/db/c5b22a315fca307097f9256fc57a93] Aug-18 19:35:12.755 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:35:12.755 [Task submitter] INFO nextflow.Session - [55/1c84cc] Submitted process > POREC:to_pairs_file (780) Aug-18 19:36:48.143 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1691; name: POREC:to_pairs_file (780); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/55/1c84cce41018e292d096c0a1c13adf] Aug-18 19:36:48.178 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:36:48.178 [Task submitter] INFO nextflow.Session - [b3/ee8f1b] Submitted process > POREC:to_pairs_file (781) Aug-18 19:38:20.256 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 124 -- tasks to be submitted are shown below ~> TaskHandler[id: 1693; name: POREC:to_pairs_file (782); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/b74cc92925ab548d70051fd6e747c4] ~> TaskHandler[id: 1694; name: POREC:to_pairs_file (783); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/ed377558bd5adfc6fb6dcb297d9639] ~> TaskHandler[id: 1695; name: POREC:to_pairs_file (784); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/eaf156cb6d333fa0c37dbcbda733a0] ~> TaskHandler[id: 1696; name: POREC:to_pairs_file (785); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/310a1deb81fb0eb4baaa6af52c20be] ~> TaskHandler[id: 1697; name: POREC:to_pairs_file (786); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/6b6d2791cf08e0914c55893a029013] ~> TaskHandler[id: 1698; name: POREC:to_pairs_file (787); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/c4466296b21db2bbd949917d31d9d3] ~> TaskHandler[id: 1699; name: POREC:to_pairs_file (788); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/b03f86d066fc9f7b6753a1c492c17f] ~> TaskHandler[id: 1700; name: POREC:to_pairs_file (789); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/86b58b71913ccd98d77c0448083eda] ~> TaskHandler[id: 1701; name: POREC:to_pairs_file (790); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/1bb266b0f6cbd60e85b95b0ee18796] ~> TaskHandler[id: 1702; name: POREC:to_pairs_file (791); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/0bd03e99bf71dbf75019ec82263b02] .. remaining tasks omitted. Aug-18 19:38:21.756 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1692; name: POREC:to_pairs_file (781); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/ee8f1b8ec092e6224d79f4f7dad4cf] Aug-18 19:38:21.781 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:38:21.781 [Task submitter] INFO nextflow.Session - [21/b74cc9] Submitted process > POREC:to_pairs_file (782) Aug-18 19:38:57.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1693; name: POREC:to_pairs_file (782); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/b74cc92925ab548d70051fd6e747c4] Aug-18 19:39:55.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1693; name: POREC:to_pairs_file (782); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/b74cc92925ab548d70051fd6e747c4] Aug-18 19:39:55.274 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:39:55.274 [Task submitter] INFO nextflow.Session - [46/ed3775] Submitted process > POREC:to_pairs_file (783) Aug-18 19:41:29.199 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1694; name: POREC:to_pairs_file (783); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/ed377558bd5adfc6fb6dcb297d9639] Aug-18 19:41:29.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:41:29.234 [Task submitter] INFO nextflow.Session - [95/eaf156] Submitted process > POREC:to_pairs_file (784) Aug-18 19:43:02.348 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1695; name: POREC:to_pairs_file (784); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/95/eaf156cb6d333fa0c37dbcbda733a0] Aug-18 19:43:02.373 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:43:02.373 [Task submitter] INFO nextflow.Session - [35/310a1d] Submitted process > POREC:to_pairs_file (785) Aug-18 19:43:20.405 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 120 -- tasks to be submitted are shown below ~> TaskHandler[id: 1697; name: POREC:to_pairs_file (786); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/6b6d2791cf08e0914c55893a029013] ~> TaskHandler[id: 1698; name: POREC:to_pairs_file (787); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/c4466296b21db2bbd949917d31d9d3] ~> TaskHandler[id: 1699; name: POREC:to_pairs_file (788); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/b03f86d066fc9f7b6753a1c492c17f] ~> TaskHandler[id: 1700; name: POREC:to_pairs_file (789); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/86b58b71913ccd98d77c0448083eda] ~> TaskHandler[id: 1701; name: POREC:to_pairs_file (790); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/1bb266b0f6cbd60e85b95b0ee18796] ~> TaskHandler[id: 1702; name: POREC:to_pairs_file (791); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/0bd03e99bf71dbf75019ec82263b02] ~> TaskHandler[id: 1703; name: POREC:to_pairs_file (792); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/9b46eca0957cc00d3c2620a2602640] ~> TaskHandler[id: 1704; name: POREC:to_pairs_file (793); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/6235a637ff9482d0a2c5b4bcb66101] ~> TaskHandler[id: 1705; name: POREC:to_pairs_file (794); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/31714404b43e9eaceb93e70c2c4e81] ~> TaskHandler[id: 1706; name: POREC:to_pairs_file (795); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/5c946aeb9cc9d5549ffc2829a57726] .. remaining tasks omitted. Aug-18 19:43:57.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1696; name: POREC:to_pairs_file (785); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/310a1deb81fb0eb4baaa6af52c20be] Aug-18 19:44:36.227 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1696; name: POREC:to_pairs_file (785); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/35/310a1deb81fb0eb4baaa6af52c20be] Aug-18 19:44:36.264 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:44:36.264 [Task submitter] INFO nextflow.Session - [2a/6b6d27] Submitted process > POREC:to_pairs_file (786) Aug-18 19:46:09.357 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1697; name: POREC:to_pairs_file (786); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/6b6d2791cf08e0914c55893a029013] Aug-18 19:46:09.390 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:46:09.390 [Task submitter] INFO nextflow.Session - [32/c44662] Submitted process > POREC:to_pairs_file (787) Aug-18 19:47:42.897 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1698; name: POREC:to_pairs_file (787); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/32/c4466296b21db2bbd949917d31d9d3] Aug-18 19:47:42.936 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:47:42.936 [Task submitter] INFO nextflow.Session - [bd/b03f86] Submitted process > POREC:to_pairs_file (788) Aug-18 19:48:20.966 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 117 -- tasks to be submitted are shown below ~> TaskHandler[id: 1700; name: POREC:to_pairs_file (789); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/86b58b71913ccd98d77c0448083eda] ~> TaskHandler[id: 1701; name: POREC:to_pairs_file (790); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/1bb266b0f6cbd60e85b95b0ee18796] ~> TaskHandler[id: 1702; name: POREC:to_pairs_file (791); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/0bd03e99bf71dbf75019ec82263b02] ~> TaskHandler[id: 1703; name: POREC:to_pairs_file (792); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/9b46eca0957cc00d3c2620a2602640] ~> TaskHandler[id: 1704; name: POREC:to_pairs_file (793); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/6235a637ff9482d0a2c5b4bcb66101] ~> TaskHandler[id: 1705; name: POREC:to_pairs_file (794); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/31714404b43e9eaceb93e70c2c4e81] ~> TaskHandler[id: 1706; name: POREC:to_pairs_file (795); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/5c946aeb9cc9d5549ffc2829a57726] ~> TaskHandler[id: 1707; name: POREC:to_pairs_file (796); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/9e1e58b1f3f0b2c878d80531831cdd] ~> TaskHandler[id: 1708; name: POREC:to_pairs_file (797); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/18ed3f8f6669705fa39594b291ffea] ~> TaskHandler[id: 1709; name: POREC:to_pairs_file (798); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/bd751fae6067568dc249f841a00145] .. remaining tasks omitted. Aug-18 19:48:57.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1699; name: POREC:to_pairs_file (788); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/b03f86d066fc9f7b6753a1c492c17f] Aug-18 19:49:15.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1699; name: POREC:to_pairs_file (788); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bd/b03f86d066fc9f7b6753a1c492c17f] Aug-18 19:49:15.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:49:15.071 [Task submitter] INFO nextflow.Session - [17/86b58b] Submitted process > POREC:to_pairs_file (789) Aug-18 19:50:45.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1700; name: POREC:to_pairs_file (789); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/17/86b58b71913ccd98d77c0448083eda] Aug-18 19:50:45.945 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:50:45.945 [Task submitter] INFO nextflow.Session - [07/1bb266] Submitted process > POREC:to_pairs_file (790) Aug-18 19:52:18.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1701; name: POREC:to_pairs_file (790); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/1bb266b0f6cbd60e85b95b0ee18796] Aug-18 19:52:18.352 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:52:18.352 [Task submitter] INFO nextflow.Session - [bf/0bd03e] Submitted process > POREC:to_pairs_file (791) Aug-18 19:53:21.428 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 114 -- tasks to be submitted are shown below ~> TaskHandler[id: 1703; name: POREC:to_pairs_file (792); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/9b46eca0957cc00d3c2620a2602640] ~> TaskHandler[id: 1704; name: POREC:to_pairs_file (793); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/6235a637ff9482d0a2c5b4bcb66101] ~> TaskHandler[id: 1705; name: POREC:to_pairs_file (794); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/31714404b43e9eaceb93e70c2c4e81] ~> TaskHandler[id: 1706; name: POREC:to_pairs_file (795); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/5c946aeb9cc9d5549ffc2829a57726] ~> TaskHandler[id: 1707; name: POREC:to_pairs_file (796); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/9e1e58b1f3f0b2c878d80531831cdd] ~> TaskHandler[id: 1708; name: POREC:to_pairs_file (797); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/18ed3f8f6669705fa39594b291ffea] ~> TaskHandler[id: 1709; name: POREC:to_pairs_file (798); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/bd751fae6067568dc249f841a00145] ~> TaskHandler[id: 1710; name: POREC:to_pairs_file (799); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/102765244cb253fb55f7617b97eeb7] ~> TaskHandler[id: 1711; name: POREC:to_pairs_file (800); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6131ecfd9f59bb6e4602f4dd27c392] ~> TaskHandler[id: 1712; name: POREC:to_pairs_file (801); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/0fc0831cca5b1e4f508527527653d9] .. remaining tasks omitted. Aug-18 19:53:51.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1702; name: POREC:to_pairs_file (791); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bf/0bd03e99bf71dbf75019ec82263b02] Aug-18 19:53:51.690 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:53:51.690 [Task submitter] INFO nextflow.Session - [b0/9b46ec] Submitted process > POREC:to_pairs_file (792) Aug-18 19:53:57.838 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1703; name: POREC:to_pairs_file (792); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/9b46eca0957cc00d3c2620a2602640] Aug-18 19:55:24.836 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1703; name: POREC:to_pairs_file (792); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b0/9b46eca0957cc00d3c2620a2602640] Aug-18 19:55:24.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:55:24.871 [Task submitter] INFO nextflow.Session - [1f/6235a6] Submitted process > POREC:to_pairs_file (793) Aug-18 19:56:57.409 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1704; name: POREC:to_pairs_file (793); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1f/6235a637ff9482d0a2c5b4bcb66101] Aug-18 19:56:57.440 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:56:57.440 [Task submitter] INFO nextflow.Session - [c4/317144] Submitted process > POREC:to_pairs_file (794) Aug-18 19:58:21.488 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 111 -- tasks to be submitted are shown below ~> TaskHandler[id: 1706; name: POREC:to_pairs_file (795); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/5c946aeb9cc9d5549ffc2829a57726] ~> TaskHandler[id: 1707; name: POREC:to_pairs_file (796); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/9e1e58b1f3f0b2c878d80531831cdd] ~> TaskHandler[id: 1708; name: POREC:to_pairs_file (797); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/18ed3f8f6669705fa39594b291ffea] ~> TaskHandler[id: 1709; name: POREC:to_pairs_file (798); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/bd751fae6067568dc249f841a00145] ~> TaskHandler[id: 1710; name: POREC:to_pairs_file (799); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/102765244cb253fb55f7617b97eeb7] ~> TaskHandler[id: 1711; name: POREC:to_pairs_file (800); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6131ecfd9f59bb6e4602f4dd27c392] ~> TaskHandler[id: 1712; name: POREC:to_pairs_file (801); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/0fc0831cca5b1e4f508527527653d9] ~> TaskHandler[id: 1713; name: POREC:to_pairs_file (802); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/a112eeb48534d0a1c636097d197fb2] ~> TaskHandler[id: 1714; name: POREC:to_pairs_file (803); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/e57f6f9be633c5329e45a1c06f80f2] ~> TaskHandler[id: 1715; name: POREC:to_pairs_file (804); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/5817ab721bc9d7736013f736f265ab] .. remaining tasks omitted. Aug-18 19:58:30.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1705; name: POREC:to_pairs_file (794); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/31714404b43e9eaceb93e70c2c4e81] Aug-18 19:58:30.687 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 19:58:30.688 [Task submitter] INFO nextflow.Session - [56/5c946a] Submitted process > POREC:to_pairs_file (795) Aug-18 19:58:57.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1706; name: POREC:to_pairs_file (795); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/5c946aeb9cc9d5549ffc2829a57726] Aug-18 20:00:04.284 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1706; name: POREC:to_pairs_file (795); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/56/5c946aeb9cc9d5549ffc2829a57726] Aug-18 20:00:04.314 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:00:04.314 [Task submitter] INFO nextflow.Session - [51/9e1e58] Submitted process > POREC:to_pairs_file (796) Aug-18 20:01:34.708 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1707; name: POREC:to_pairs_file (796); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/9e1e58b1f3f0b2c878d80531831cdd] Aug-18 20:01:34.714 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:01:34.714 [Task submitter] INFO nextflow.Session - [c3/18ed3f] Submitted process > POREC:to_pairs_file (797) Aug-18 20:03:06.559 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1708; name: POREC:to_pairs_file (797); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c3/18ed3f8f6669705fa39594b291ffea] Aug-18 20:03:06.593 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:03:06.593 [Task submitter] INFO nextflow.Session - [cd/bd751f] Submitted process > POREC:to_pairs_file (798) Aug-18 20:03:21.627 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 107 -- tasks to be submitted are shown below ~> TaskHandler[id: 1710; name: POREC:to_pairs_file (799); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/102765244cb253fb55f7617b97eeb7] ~> TaskHandler[id: 1711; name: POREC:to_pairs_file (800); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6131ecfd9f59bb6e4602f4dd27c392] ~> TaskHandler[id: 1712; name: POREC:to_pairs_file (801); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/0fc0831cca5b1e4f508527527653d9] ~> TaskHandler[id: 1713; name: POREC:to_pairs_file (802); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/a112eeb48534d0a1c636097d197fb2] ~> TaskHandler[id: 1714; name: POREC:to_pairs_file (803); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/e57f6f9be633c5329e45a1c06f80f2] ~> TaskHandler[id: 1715; name: POREC:to_pairs_file (804); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/5817ab721bc9d7736013f736f265ab] ~> TaskHandler[id: 1716; name: POREC:to_pairs_file (805); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/503a70485a234284a2bb17ee347ae6] ~> TaskHandler[id: 1717; name: POREC:to_pairs_file (806); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/08926521d4cef168b185ad67ddd079] ~> TaskHandler[id: 1718; name: POREC:to_pairs_file (807); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/97b12a552509c09630b6ad150ceb97] ~> TaskHandler[id: 1719; name: POREC:to_pairs_file (808); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4644346ad390231554cd6d2eeedafe] .. remaining tasks omitted. Aug-18 20:03:57.920 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1709; name: POREC:to_pairs_file (798); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/bd751fae6067568dc249f841a00145] Aug-18 20:04:39.555 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1709; name: POREC:to_pairs_file (798); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cd/bd751fae6067568dc249f841a00145] Aug-18 20:04:39.591 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:04:39.591 [Task submitter] INFO nextflow.Session - [a5/102765] Submitted process > POREC:to_pairs_file (799) Aug-18 20:06:12.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1710; name: POREC:to_pairs_file (799); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/102765244cb253fb55f7617b97eeb7] Aug-18 20:06:12.481 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:06:12.481 [Task submitter] INFO nextflow.Session - [3a/6131ec] Submitted process > POREC:to_pairs_file (800) Aug-18 20:07:45.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1711; name: POREC:to_pairs_file (800); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3a/6131ecfd9f59bb6e4602f4dd27c392] Aug-18 20:07:45.109 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:07:45.109 [Task submitter] INFO nextflow.Session - [78/0fc083] Submitted process > POREC:to_pairs_file (801) Aug-18 20:08:22.131 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 104 -- tasks to be submitted are shown below ~> TaskHandler[id: 1713; name: POREC:to_pairs_file (802); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/a112eeb48534d0a1c636097d197fb2] ~> TaskHandler[id: 1714; name: POREC:to_pairs_file (803); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/e57f6f9be633c5329e45a1c06f80f2] ~> TaskHandler[id: 1715; name: POREC:to_pairs_file (804); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/5817ab721bc9d7736013f736f265ab] ~> TaskHandler[id: 1716; name: POREC:to_pairs_file (805); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/503a70485a234284a2bb17ee347ae6] ~> TaskHandler[id: 1717; name: POREC:to_pairs_file (806); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/08926521d4cef168b185ad67ddd079] ~> TaskHandler[id: 1718; name: POREC:to_pairs_file (807); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/97b12a552509c09630b6ad150ceb97] ~> TaskHandler[id: 1719; name: POREC:to_pairs_file (808); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4644346ad390231554cd6d2eeedafe] ~> TaskHandler[id: 1720; name: POREC:to_pairs_file (809); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/87660197cab7c7918454a04bcdf0e8] ~> TaskHandler[id: 1721; name: POREC:to_pairs_file (810); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/dbe701945e8e42903d4d7d94868fb8] ~> TaskHandler[id: 1722; name: POREC:to_pairs_file (811); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/5c65d6701157672e83fee860c8aab9] .. remaining tasks omitted. Aug-18 20:08:57.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1712; name: POREC:to_pairs_file (801); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/0fc0831cca5b1e4f508527527653d9] Aug-18 20:09:17.159 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1712; name: POREC:to_pairs_file (801); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/78/0fc0831cca5b1e4f508527527653d9] Aug-18 20:09:17.206 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:09:17.206 [Task submitter] INFO nextflow.Session - [30/a112ee] Submitted process > POREC:to_pairs_file (802) Aug-18 20:10:49.401 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1713; name: POREC:to_pairs_file (802); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/30/a112eeb48534d0a1c636097d197fb2] Aug-18 20:10:49.436 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:10:49.436 [Task submitter] INFO nextflow.Session - [04/e57f6f] Submitted process > POREC:to_pairs_file (803) Aug-18 20:12:22.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1714; name: POREC:to_pairs_file (803); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/04/e57f6f9be633c5329e45a1c06f80f2] Aug-18 20:12:22.113 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:12:22.113 [Task submitter] INFO nextflow.Session - [df/5817ab] Submitted process > POREC:to_pairs_file (804) Aug-18 20:13:22.146 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 101 -- tasks to be submitted are shown below ~> TaskHandler[id: 1716; name: POREC:to_pairs_file (805); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/503a70485a234284a2bb17ee347ae6] ~> TaskHandler[id: 1717; name: POREC:to_pairs_file (806); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/08926521d4cef168b185ad67ddd079] ~> TaskHandler[id: 1718; name: POREC:to_pairs_file (807); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/97b12a552509c09630b6ad150ceb97] ~> TaskHandler[id: 1719; name: POREC:to_pairs_file (808); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4644346ad390231554cd6d2eeedafe] ~> TaskHandler[id: 1720; name: POREC:to_pairs_file (809); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/87660197cab7c7918454a04bcdf0e8] ~> TaskHandler[id: 1721; name: POREC:to_pairs_file (810); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/dbe701945e8e42903d4d7d94868fb8] ~> TaskHandler[id: 1722; name: POREC:to_pairs_file (811); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/5c65d6701157672e83fee860c8aab9] ~> TaskHandler[id: 1723; name: POREC:to_pairs_file (812); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/fd1a8a370142a421d736419fe7ea19] ~> TaskHandler[id: 1724; name: POREC:to_pairs_file (813); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/e9dcf970329334972f1ec50cd7f910] ~> TaskHandler[id: 1725; name: POREC:to_pairs_file (814); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/b0cd5a8cf970af12a421fdfc81738c] .. remaining tasks omitted. Aug-18 20:13:58.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1715; name: POREC:to_pairs_file (804); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/5817ab721bc9d7736013f736f265ab] Aug-18 20:14:40.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1715; name: POREC:to_pairs_file (804); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/df/5817ab721bc9d7736013f736f265ab] Aug-18 20:14:40.623 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:14:40.623 [Task submitter] INFO nextflow.Session - [ca/503a70] Submitted process > POREC:to_pairs_file (805) Aug-18 20:16:14.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1716; name: POREC:to_pairs_file (805); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/503a70485a234284a2bb17ee347ae6] Aug-18 20:16:14.496 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:16:14.496 [Task submitter] INFO nextflow.Session - [fd/089265] Submitted process > POREC:to_pairs_file (806) Aug-18 20:17:47.262 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1717; name: POREC:to_pairs_file (806); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fd/08926521d4cef168b185ad67ddd079] Aug-18 20:17:47.267 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:17:47.267 [Task submitter] INFO nextflow.Session - [9b/97b12a] Submitted process > POREC:to_pairs_file (807) Aug-18 20:18:22.290 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 98 -- tasks to be submitted are shown below ~> TaskHandler[id: 1719; name: POREC:to_pairs_file (808); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4644346ad390231554cd6d2eeedafe] ~> TaskHandler[id: 1720; name: POREC:to_pairs_file (809); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/87660197cab7c7918454a04bcdf0e8] ~> TaskHandler[id: 1721; name: POREC:to_pairs_file (810); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/dbe701945e8e42903d4d7d94868fb8] ~> TaskHandler[id: 1722; name: POREC:to_pairs_file (811); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/5c65d6701157672e83fee860c8aab9] ~> TaskHandler[id: 1723; name: POREC:to_pairs_file (812); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/fd1a8a370142a421d736419fe7ea19] ~> TaskHandler[id: 1724; name: POREC:to_pairs_file (813); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/e9dcf970329334972f1ec50cd7f910] ~> TaskHandler[id: 1725; name: POREC:to_pairs_file (814); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/b0cd5a8cf970af12a421fdfc81738c] ~> TaskHandler[id: 1726; name: POREC:to_pairs_file (815); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/bfe2c15ca58ec7d89859fab314f0ec] ~> TaskHandler[id: 1727; name: POREC:to_pairs_file (816); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2109c7797d5027282bb9f4157e2f4a] ~> TaskHandler[id: 1728; name: POREC:to_pairs_file (817); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/cbe8d13ec36b2bcbae5eaff581fb54] .. remaining tasks omitted. Aug-18 20:18:58.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1718; name: POREC:to_pairs_file (807); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/97b12a552509c09630b6ad150ceb97] Aug-18 20:19:20.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1718; name: POREC:to_pairs_file (807); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/97b12a552509c09630b6ad150ceb97] Aug-18 20:19:20.105 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:19:20.105 [Task submitter] INFO nextflow.Session - [ed/464434] Submitted process > POREC:to_pairs_file (808) Aug-18 20:20:53.643 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1719; name: POREC:to_pairs_file (808); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ed/4644346ad390231554cd6d2eeedafe] Aug-18 20:20:53.648 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:20:53.648 [Task submitter] INFO nextflow.Session - [3d/876601] Submitted process > POREC:to_pairs_file (809) Aug-18 20:22:26.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1720; name: POREC:to_pairs_file (809); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/3d/87660197cab7c7918454a04bcdf0e8] Aug-18 20:22:26.282 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:22:26.282 [Task submitter] INFO nextflow.Session - [1b/dbe701] Submitted process > POREC:to_pairs_file (810) Aug-18 20:23:22.317 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 95 -- tasks to be submitted are shown below ~> TaskHandler[id: 1722; name: POREC:to_pairs_file (811); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/5c65d6701157672e83fee860c8aab9] ~> TaskHandler[id: 1723; name: POREC:to_pairs_file (812); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/fd1a8a370142a421d736419fe7ea19] ~> TaskHandler[id: 1724; name: POREC:to_pairs_file (813); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/e9dcf970329334972f1ec50cd7f910] ~> TaskHandler[id: 1725; name: POREC:to_pairs_file (814); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/b0cd5a8cf970af12a421fdfc81738c] ~> TaskHandler[id: 1726; name: POREC:to_pairs_file (815); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/bfe2c15ca58ec7d89859fab314f0ec] ~> TaskHandler[id: 1727; name: POREC:to_pairs_file (816); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2109c7797d5027282bb9f4157e2f4a] ~> TaskHandler[id: 1728; name: POREC:to_pairs_file (817); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/cbe8d13ec36b2bcbae5eaff581fb54] ~> TaskHandler[id: 1729; name: POREC:to_pairs_file (818); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/120d8a9b94518437babeeec5031c38] ~> TaskHandler[id: 1730; name: POREC:to_pairs_file (819); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/e0d27ca7016c45c450d1245e4f3998] ~> TaskHandler[id: 1731; name: POREC:to_pairs_file (820); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/35a5258267250cc6a070d196b96348] .. remaining tasks omitted. Aug-18 20:23:58.137 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1721; name: POREC:to_pairs_file (810); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/dbe701945e8e42903d4d7d94868fb8] Aug-18 20:24:00.348 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1721; name: POREC:to_pairs_file (810); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/dbe701945e8e42903d4d7d94868fb8] Aug-18 20:24:00.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:24:00.379 [Task submitter] INFO nextflow.Session - [09/5c65d6] Submitted process > POREC:to_pairs_file (811) Aug-18 20:25:31.808 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1722; name: POREC:to_pairs_file (811); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/09/5c65d6701157672e83fee860c8aab9] Aug-18 20:25:31.858 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:25:31.858 [Task submitter] INFO nextflow.Session - [23/fd1a8a] Submitted process > POREC:to_pairs_file (812) Aug-18 20:27:03.881 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1723; name: POREC:to_pairs_file (812); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/23/fd1a8a370142a421d736419fe7ea19] Aug-18 20:27:03.915 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:27:03.915 [Task submitter] INFO nextflow.Session - [f6/e9dcf9] Submitted process > POREC:to_pairs_file (813) Aug-18 20:28:22.973 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 92 -- tasks to be submitted are shown below ~> TaskHandler[id: 1725; name: POREC:to_pairs_file (814); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/b0cd5a8cf970af12a421fdfc81738c] ~> TaskHandler[id: 1726; name: POREC:to_pairs_file (815); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/bfe2c15ca58ec7d89859fab314f0ec] ~> TaskHandler[id: 1727; name: POREC:to_pairs_file (816); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2109c7797d5027282bb9f4157e2f4a] ~> TaskHandler[id: 1728; name: POREC:to_pairs_file (817); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/cbe8d13ec36b2bcbae5eaff581fb54] ~> TaskHandler[id: 1729; name: POREC:to_pairs_file (818); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/120d8a9b94518437babeeec5031c38] ~> TaskHandler[id: 1730; name: POREC:to_pairs_file (819); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/e0d27ca7016c45c450d1245e4f3998] ~> TaskHandler[id: 1731; name: POREC:to_pairs_file (820); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/35a5258267250cc6a070d196b96348] ~> TaskHandler[id: 1732; name: POREC:to_pairs_file (821); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/a52c2e9adb173e682cf8e4eab36c8a] ~> TaskHandler[id: 1733; name: POREC:to_pairs_file (822); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/d23bbfe0e0415127a13685bc8f4ac3] ~> TaskHandler[id: 1734; name: POREC:to_pairs_file (823); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/92faf163862b65faa189fc1726defc] .. remaining tasks omitted. Aug-18 20:28:36.061 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1724; name: POREC:to_pairs_file (813); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/e9dcf970329334972f1ec50cd7f910] Aug-18 20:28:36.096 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:28:36.096 [Task submitter] INFO nextflow.Session - [46/b0cd5a] Submitted process > POREC:to_pairs_file (814) Aug-18 20:28:58.173 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1725; name: POREC:to_pairs_file (814); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/b0cd5a8cf970af12a421fdfc81738c] Aug-18 20:30:09.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1725; name: POREC:to_pairs_file (814); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/46/b0cd5a8cf970af12a421fdfc81738c] Aug-18 20:30:09.284 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:30:09.284 [Task submitter] INFO nextflow.Session - [ff/bfe2c1] Submitted process > POREC:to_pairs_file (815) Aug-18 20:31:39.971 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1726; name: POREC:to_pairs_file (815); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/bfe2c15ca58ec7d89859fab314f0ec] Aug-18 20:31:40.009 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:31:40.009 [Task submitter] INFO nextflow.Session - [9b/2109c7] Submitted process > POREC:to_pairs_file (816) Aug-18 20:33:11.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1727; name: POREC:to_pairs_file (816); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9b/2109c7797d5027282bb9f4157e2f4a] Aug-18 20:33:11.556 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:33:11.571 [Task submitter] INFO nextflow.Session - [e3/cbe8d1] Submitted process > POREC:to_pairs_file (817) Aug-18 20:33:23.581 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 88 -- tasks to be submitted are shown below ~> TaskHandler[id: 1729; name: POREC:to_pairs_file (818); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/120d8a9b94518437babeeec5031c38] ~> TaskHandler[id: 1730; name: POREC:to_pairs_file (819); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/e0d27ca7016c45c450d1245e4f3998] ~> TaskHandler[id: 1731; name: POREC:to_pairs_file (820); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/35a5258267250cc6a070d196b96348] ~> TaskHandler[id: 1732; name: POREC:to_pairs_file (821); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/a52c2e9adb173e682cf8e4eab36c8a] ~> TaskHandler[id: 1733; name: POREC:to_pairs_file (822); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/d23bbfe0e0415127a13685bc8f4ac3] ~> TaskHandler[id: 1734; name: POREC:to_pairs_file (823); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/92faf163862b65faa189fc1726defc] ~> TaskHandler[id: 1735; name: POREC:to_pairs_file (824); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/5f96f5b525353f04cfe2c73e3e2619] ~> TaskHandler[id: 1736; name: POREC:to_pairs_file (825); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/321940fe9b54901b9df8e684343e18] ~> TaskHandler[id: 1737; name: POREC:to_pairs_file (826); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/f72bb395fbad28b46b74b0802e0f12] ~> TaskHandler[id: 1738; name: POREC:to_pairs_file (827); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7b9256ccbcf65d6df0e91a5ec2f1c7] .. remaining tasks omitted. Aug-18 20:33:58.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1728; name: POREC:to_pairs_file (817); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/cbe8d13ec36b2bcbae5eaff581fb54] Aug-18 20:34:42.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1728; name: POREC:to_pairs_file (817); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e3/cbe8d13ec36b2bcbae5eaff581fb54] Aug-18 20:34:42.528 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:34:42.528 [Task submitter] INFO nextflow.Session - [ee/120d8a] Submitted process > POREC:to_pairs_file (818) Aug-18 20:36:15.176 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1729; name: POREC:to_pairs_file (818); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ee/120d8a9b94518437babeeec5031c38] Aug-18 20:36:15.225 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:36:15.225 [Task submitter] INFO nextflow.Session - [7a/e0d27c] Submitted process > POREC:to_pairs_file (819) Aug-18 20:37:46.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1730; name: POREC:to_pairs_file (819); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/e0d27ca7016c45c450d1245e4f3998] Aug-18 20:37:46.275 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:37:46.288 [Task submitter] INFO nextflow.Session - [99/35a525] Submitted process > POREC:to_pairs_file (820) Aug-18 20:38:24.308 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 85 -- tasks to be submitted are shown below ~> TaskHandler[id: 1732; name: POREC:to_pairs_file (821); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/a52c2e9adb173e682cf8e4eab36c8a] ~> TaskHandler[id: 1733; name: POREC:to_pairs_file (822); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/d23bbfe0e0415127a13685bc8f4ac3] ~> TaskHandler[id: 1734; name: POREC:to_pairs_file (823); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/92faf163862b65faa189fc1726defc] ~> TaskHandler[id: 1735; name: POREC:to_pairs_file (824); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/5f96f5b525353f04cfe2c73e3e2619] ~> TaskHandler[id: 1736; name: POREC:to_pairs_file (825); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/321940fe9b54901b9df8e684343e18] ~> TaskHandler[id: 1737; name: POREC:to_pairs_file (826); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/f72bb395fbad28b46b74b0802e0f12] ~> TaskHandler[id: 1738; name: POREC:to_pairs_file (827); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7b9256ccbcf65d6df0e91a5ec2f1c7] ~> TaskHandler[id: 1739; name: POREC:to_pairs_file (828); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/823a8ccfc9994c1b3bc43ab1696b9d] ~> TaskHandler[id: 1740; name: POREC:to_pairs_file (829); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/54c40f1cdb62bf2fe4a97040716b13] ~> TaskHandler[id: 1741; name: POREC:to_pairs_file (830); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/fa0b097c60bf1adab1e23b6ef2a710] .. remaining tasks omitted. Aug-18 20:38:58.343 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1731; name: POREC:to_pairs_file (820); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/35a5258267250cc6a070d196b96348] Aug-18 20:39:21.014 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1731; name: POREC:to_pairs_file (820); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/35a5258267250cc6a070d196b96348] Aug-18 20:39:21.053 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:39:21.053 [Task submitter] INFO nextflow.Session - [f2/a52c2e] Submitted process > POREC:to_pairs_file (821) Aug-18 20:40:55.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1732; name: POREC:to_pairs_file (821); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f2/a52c2e9adb173e682cf8e4eab36c8a] Aug-18 20:40:55.821 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:40:55.821 [Task submitter] INFO nextflow.Session - [51/d23bbf] Submitted process > POREC:to_pairs_file (822) Aug-18 20:42:29.848 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1733; name: POREC:to_pairs_file (822); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/51/d23bbfe0e0415127a13685bc8f4ac3] Aug-18 20:42:29.861 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:42:29.861 [Task submitter] INFO nextflow.Session - [a9/92faf1] Submitted process > POREC:to_pairs_file (823) Aug-18 20:43:24.907 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 82 -- tasks to be submitted are shown below ~> TaskHandler[id: 1735; name: POREC:to_pairs_file (824); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/5f96f5b525353f04cfe2c73e3e2619] ~> TaskHandler[id: 1736; name: POREC:to_pairs_file (825); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/321940fe9b54901b9df8e684343e18] ~> TaskHandler[id: 1737; name: POREC:to_pairs_file (826); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/f72bb395fbad28b46b74b0802e0f12] ~> TaskHandler[id: 1738; name: POREC:to_pairs_file (827); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7b9256ccbcf65d6df0e91a5ec2f1c7] ~> TaskHandler[id: 1739; name: POREC:to_pairs_file (828); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/823a8ccfc9994c1b3bc43ab1696b9d] ~> TaskHandler[id: 1740; name: POREC:to_pairs_file (829); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/54c40f1cdb62bf2fe4a97040716b13] ~> TaskHandler[id: 1741; name: POREC:to_pairs_file (830); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/fa0b097c60bf1adab1e23b6ef2a710] ~> TaskHandler[id: 1742; name: POREC:to_pairs_file (831); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/a24eb20351a052a317a302796081c7] ~> TaskHandler[id: 1743; name: POREC:to_pairs_file (832); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/94461d9ba3444db3f9e5122352d55b] ~> TaskHandler[id: 1744; name: POREC:to_pairs_file (833); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/0c2553826e9f29a8254bd8a0f1705f] .. remaining tasks omitted. Aug-18 20:43:58.396 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1734; name: POREC:to_pairs_file (823); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/92faf163862b65faa189fc1726defc] Aug-18 20:44:03.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1734; name: POREC:to_pairs_file (823); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a9/92faf163862b65faa189fc1726defc] Aug-18 20:44:03.284 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:44:03.285 [Task submitter] INFO nextflow.Session - [e2/5f96f5] Submitted process > POREC:to_pairs_file (824) Aug-18 20:45:35.938 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1735; name: POREC:to_pairs_file (824); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e2/5f96f5b525353f04cfe2c73e3e2619] Aug-18 20:45:35.942 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:45:35.942 [Task submitter] INFO nextflow.Session - [52/321940] Submitted process > POREC:to_pairs_file (825) Aug-18 20:47:08.551 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1736; name: POREC:to_pairs_file (825); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/52/321940fe9b54901b9df8e684343e18] Aug-18 20:47:08.556 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:47:08.556 [Task submitter] INFO nextflow.Session - [16/f72bb3] Submitted process > POREC:to_pairs_file (826) Aug-18 20:48:25.625 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 79 -- tasks to be submitted are shown below ~> TaskHandler[id: 1738; name: POREC:to_pairs_file (827); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7b9256ccbcf65d6df0e91a5ec2f1c7] ~> TaskHandler[id: 1739; name: POREC:to_pairs_file (828); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/823a8ccfc9994c1b3bc43ab1696b9d] ~> TaskHandler[id: 1740; name: POREC:to_pairs_file (829); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/54c40f1cdb62bf2fe4a97040716b13] ~> TaskHandler[id: 1741; name: POREC:to_pairs_file (830); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/fa0b097c60bf1adab1e23b6ef2a710] ~> TaskHandler[id: 1742; name: POREC:to_pairs_file (831); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/a24eb20351a052a317a302796081c7] ~> TaskHandler[id: 1743; name: POREC:to_pairs_file (832); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/94461d9ba3444db3f9e5122352d55b] ~> TaskHandler[id: 1744; name: POREC:to_pairs_file (833); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/0c2553826e9f29a8254bd8a0f1705f] ~> TaskHandler[id: 1745; name: POREC:to_pairs_file (834); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a862b27c5dd235b7e3eebca217260a] ~> TaskHandler[id: 1746; name: POREC:to_pairs_file (835); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/decd6ec509d73460d6dfdd54dda4b6] ~> TaskHandler[id: 1747; name: POREC:to_pairs_file (836); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/c97640895bb28f9c2c90fbad0f929d] .. remaining tasks omitted. Aug-18 20:48:41.743 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1737; name: POREC:to_pairs_file (826); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/16/f72bb395fbad28b46b74b0802e0f12] Aug-18 20:48:41.748 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:48:41.748 [Task submitter] INFO nextflow.Session - [b3/7b9256] Submitted process > POREC:to_pairs_file (827) Aug-18 20:48:58.464 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1738; name: POREC:to_pairs_file (827); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7b9256ccbcf65d6df0e91a5ec2f1c7] Aug-18 20:51:02.712 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1738; name: POREC:to_pairs_file (827); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/7b9256ccbcf65d6df0e91a5ec2f1c7] Aug-18 20:51:02.717 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:51:02.717 [Task submitter] INFO nextflow.Session - [21/823a8c] Submitted process > POREC:to_pairs_file (828) Aug-18 20:52:39.156 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1739; name: POREC:to_pairs_file (828); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/21/823a8ccfc9994c1b3bc43ab1696b9d] Aug-18 20:52:39.162 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:52:39.162 [Task submitter] INFO nextflow.Session - [06/54c40f] Submitted process > POREC:to_pairs_file (829) Aug-18 20:53:26.204 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 76 -- tasks to be submitted are shown below ~> TaskHandler[id: 1741; name: POREC:to_pairs_file (830); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/fa0b097c60bf1adab1e23b6ef2a710] ~> TaskHandler[id: 1742; name: POREC:to_pairs_file (831); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/a24eb20351a052a317a302796081c7] ~> TaskHandler[id: 1743; name: POREC:to_pairs_file (832); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/94461d9ba3444db3f9e5122352d55b] ~> TaskHandler[id: 1744; name: POREC:to_pairs_file (833); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/0c2553826e9f29a8254bd8a0f1705f] ~> TaskHandler[id: 1745; name: POREC:to_pairs_file (834); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a862b27c5dd235b7e3eebca217260a] ~> TaskHandler[id: 1746; name: POREC:to_pairs_file (835); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/decd6ec509d73460d6dfdd54dda4b6] ~> TaskHandler[id: 1747; name: POREC:to_pairs_file (836); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/c97640895bb28f9c2c90fbad0f929d] ~> TaskHandler[id: 1749; name: POREC:to_pairs_file (838); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/41b589b1d2cd04e70c6cda4aa9b310] ~> TaskHandler[id: 1750; name: POREC:to_pairs_file (839); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/0d27f7ea0b18b4e6aa1d368dfc87b5] ~> TaskHandler[id: 1751; name: POREC:to_pairs_file (840); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/9fa096c8f2a10425df97c525f9d11f] .. remaining tasks omitted. Aug-18 20:53:58.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1740; name: POREC:to_pairs_file (829); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/54c40f1cdb62bf2fe4a97040716b13] Aug-18 20:54:13.349 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1740; name: POREC:to_pairs_file (829); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/06/54c40f1cdb62bf2fe4a97040716b13] Aug-18 20:54:13.388 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:54:13.388 [Task submitter] INFO nextflow.Session - [8e/fa0b09] Submitted process > POREC:to_pairs_file (830) Aug-18 20:55:48.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1741; name: POREC:to_pairs_file (830); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8e/fa0b097c60bf1adab1e23b6ef2a710] Aug-18 20:55:48.465 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:55:48.465 [Task submitter] INFO nextflow.Session - [18/a24eb2] Submitted process > POREC:to_pairs_file (831) Aug-18 20:57:21.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1742; name: POREC:to_pairs_file (831); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/a24eb20351a052a317a302796081c7] Aug-18 20:57:21.139 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:57:21.139 [Task submitter] INFO nextflow.Session - [0b/94461d] Submitted process > POREC:to_pairs_file (832) Aug-18 20:58:27.178 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 73 -- tasks to be submitted are shown below ~> TaskHandler[id: 1744; name: POREC:to_pairs_file (833); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/0c2553826e9f29a8254bd8a0f1705f] ~> TaskHandler[id: 1745; name: POREC:to_pairs_file (834); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a862b27c5dd235b7e3eebca217260a] ~> TaskHandler[id: 1746; name: POREC:to_pairs_file (835); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/decd6ec509d73460d6dfdd54dda4b6] ~> TaskHandler[id: 1747; name: POREC:to_pairs_file (836); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/c97640895bb28f9c2c90fbad0f929d] ~> TaskHandler[id: 1749; name: POREC:to_pairs_file (838); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/41b589b1d2cd04e70c6cda4aa9b310] ~> TaskHandler[id: 1750; name: POREC:to_pairs_file (839); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/0d27f7ea0b18b4e6aa1d368dfc87b5] ~> TaskHandler[id: 1751; name: POREC:to_pairs_file (840); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/9fa096c8f2a10425df97c525f9d11f] ~> TaskHandler[id: 1752; name: POREC:to_pairs_file (841); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/9f4be608ed0a7ba3048bf02f7d436f] ~> TaskHandler[id: 1753; name: POREC:to_pairs_file (842); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/3a14e04485baff83813902106914fb] ~> TaskHandler[id: 1754; name: POREC:to_pairs_file (843); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/bc62f2af0d7736d57d03cd128e7c8f] .. remaining tasks omitted. Aug-18 20:58:53.695 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1743; name: POREC:to_pairs_file (832); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/0b/94461d9ba3444db3f9e5122352d55b] Aug-18 20:58:53.699 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 20:58:53.699 [Task submitter] INFO nextflow.Session - [69/0c2553] Submitted process > POREC:to_pairs_file (833) Aug-18 20:58:58.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1744; name: POREC:to_pairs_file (833); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/0c2553826e9f29a8254bd8a0f1705f] Aug-18 21:00:27.573 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1744; name: POREC:to_pairs_file (833); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/69/0c2553826e9f29a8254bd8a0f1705f] Aug-18 21:00:27.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:00:27.579 [Task submitter] INFO nextflow.Session - [4d/a862b2] Submitted process > POREC:to_pairs_file (834) Aug-18 21:02:01.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1745; name: POREC:to_pairs_file (834); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4d/a862b27c5dd235b7e3eebca217260a] Aug-18 21:02:01.721 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:02:01.721 [Task submitter] INFO nextflow.Session - [99/decd6e] Submitted process > POREC:to_pairs_file (835) Aug-18 21:03:27.758 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 70 -- tasks to be submitted are shown below ~> TaskHandler[id: 1747; name: POREC:to_pairs_file (836); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/c97640895bb28f9c2c90fbad0f929d] ~> TaskHandler[id: 1749; name: POREC:to_pairs_file (838); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/41b589b1d2cd04e70c6cda4aa9b310] ~> TaskHandler[id: 1750; name: POREC:to_pairs_file (839); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/0d27f7ea0b18b4e6aa1d368dfc87b5] ~> TaskHandler[id: 1751; name: POREC:to_pairs_file (840); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/9fa096c8f2a10425df97c525f9d11f] ~> TaskHandler[id: 1752; name: POREC:to_pairs_file (841); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/9f4be608ed0a7ba3048bf02f7d436f] ~> TaskHandler[id: 1753; name: POREC:to_pairs_file (842); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/3a14e04485baff83813902106914fb] ~> TaskHandler[id: 1754; name: POREC:to_pairs_file (843); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/bc62f2af0d7736d57d03cd128e7c8f] ~> TaskHandler[id: 1755; name: POREC:to_pairs_file (844); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/36154761376aca28937ec2a3ed507f] ~> TaskHandler[id: 1756; name: POREC:to_pairs_file (845); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/5b1ce9693d0bce358911904fda65b4] ~> TaskHandler[id: 1757; name: POREC:to_pairs_file (846); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ce804358d4b1ef248e184a4041d930] .. remaining tasks omitted. Aug-18 21:03:37.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1746; name: POREC:to_pairs_file (835); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/99/decd6ec509d73460d6dfdd54dda4b6] Aug-18 21:03:37.482 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:03:37.482 [Task submitter] INFO nextflow.Session - [a0/c97640] Submitted process > POREC:to_pairs_file (836) Aug-18 21:03:58.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1747; name: POREC:to_pairs_file (836); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/c97640895bb28f9c2c90fbad0f929d] Aug-18 21:05:10.541 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1747; name: POREC:to_pairs_file (836); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a0/c97640895bb28f9c2c90fbad0f929d] Aug-18 21:05:10.570 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:05:10.570 [Task submitter] INFO nextflow.Session - [8d/41b589] Submitted process > POREC:to_pairs_file (838) Aug-18 21:06:44.641 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1749; name: POREC:to_pairs_file (838); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/8d/41b589b1d2cd04e70c6cda4aa9b310] Aug-18 21:06:44.649 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:06:44.649 [Task submitter] INFO nextflow.Session - [da/0d27f7] Submitted process > POREC:to_pairs_file (839) Aug-18 21:08:18.631 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1750; name: POREC:to_pairs_file (839); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/da/0d27f7ea0b18b4e6aa1d368dfc87b5] Aug-18 21:08:18.682 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:08:18.682 [Task submitter] INFO nextflow.Session - [65/9fa096] Submitted process > POREC:to_pairs_file (840) Aug-18 21:08:28.692 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 66 -- tasks to be submitted are shown below ~> TaskHandler[id: 1752; name: POREC:to_pairs_file (841); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/9f4be608ed0a7ba3048bf02f7d436f] ~> TaskHandler[id: 1753; name: POREC:to_pairs_file (842); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/3a14e04485baff83813902106914fb] ~> TaskHandler[id: 1754; name: POREC:to_pairs_file (843); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/bc62f2af0d7736d57d03cd128e7c8f] ~> TaskHandler[id: 1755; name: POREC:to_pairs_file (844); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/36154761376aca28937ec2a3ed507f] ~> TaskHandler[id: 1756; name: POREC:to_pairs_file (845); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/5b1ce9693d0bce358911904fda65b4] ~> TaskHandler[id: 1757; name: POREC:to_pairs_file (846); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ce804358d4b1ef248e184a4041d930] ~> TaskHandler[id: 1758; name: POREC:to_pairs_file (847); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/65d452d6962cd439c19ca6528bda64] ~> TaskHandler[id: 1759; name: POREC:to_pairs_file (848); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/a772feb3201eb330f351154e3025ba] ~> TaskHandler[id: 1760; name: POREC:to_pairs_file (849); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/e22384c12a79bab49a6d7ca3deda80] ~> TaskHandler[id: 1761; name: POREC:to_pairs_file (850); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/190af9848607f51e4426df06c2ad5d] .. remaining tasks omitted. Aug-18 21:08:58.718 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1751; name: POREC:to_pairs_file (840); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/9fa096c8f2a10425df97c525f9d11f] Aug-18 21:09:52.444 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1751; name: POREC:to_pairs_file (840); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/65/9fa096c8f2a10425df97c525f9d11f] Aug-18 21:09:52.479 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:09:52.479 [Task submitter] INFO nextflow.Session - [1b/9f4be6] Submitted process > POREC:to_pairs_file (841) Aug-18 21:11:26.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1752; name: POREC:to_pairs_file (841); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1b/9f4be608ed0a7ba3048bf02f7d436f] Aug-18 21:11:26.404 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:11:26.404 [Task submitter] INFO nextflow.Session - [7a/3a14e0] Submitted process > POREC:to_pairs_file (842) Aug-18 21:13:02.697 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1753; name: POREC:to_pairs_file (842); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7a/3a14e04485baff83813902106914fb] Aug-18 21:13:02.718 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:13:02.718 [Task submitter] INFO nextflow.Session - [ac/bc62f2] Submitted process > POREC:to_pairs_file (843) Aug-18 21:13:28.733 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 63 -- tasks to be submitted are shown below ~> TaskHandler[id: 1755; name: POREC:to_pairs_file (844); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/36154761376aca28937ec2a3ed507f] ~> TaskHandler[id: 1756; name: POREC:to_pairs_file (845); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/5b1ce9693d0bce358911904fda65b4] ~> TaskHandler[id: 1757; name: POREC:to_pairs_file (846); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ce804358d4b1ef248e184a4041d930] ~> TaskHandler[id: 1758; name: POREC:to_pairs_file (847); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/65d452d6962cd439c19ca6528bda64] ~> TaskHandler[id: 1759; name: POREC:to_pairs_file (848); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/a772feb3201eb330f351154e3025ba] ~> TaskHandler[id: 1760; name: POREC:to_pairs_file (849); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/e22384c12a79bab49a6d7ca3deda80] ~> TaskHandler[id: 1761; name: POREC:to_pairs_file (850); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/190af9848607f51e4426df06c2ad5d] ~> TaskHandler[id: 1762; name: POREC:to_pairs_file (851); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/52af5880cfc02644c3859fa4b64422] ~> TaskHandler[id: 1763; name: POREC:to_pairs_file (852); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/a0877c6180de4c7716a0f5c819ed02] ~> TaskHandler[id: 1764; name: POREC:to_pairs_file (853); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/d7aaf42982cfbd75362220fd5b9017] .. remaining tasks omitted. Aug-18 21:13:58.724 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1754; name: POREC:to_pairs_file (843); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/bc62f2af0d7736d57d03cd128e7c8f] Aug-18 21:14:34.887 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1754; name: POREC:to_pairs_file (843); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ac/bc62f2af0d7736d57d03cd128e7c8f] Aug-18 21:14:34.917 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:14:34.917 [Task submitter] INFO nextflow.Session - [4f/361547] Submitted process > POREC:to_pairs_file (844) Aug-18 21:16:07.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1755; name: POREC:to_pairs_file (844); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/36154761376aca28937ec2a3ed507f] Aug-18 21:16:07.847 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:16:07.847 [Task submitter] INFO nextflow.Session - [4f/5b1ce9] Submitted process > POREC:to_pairs_file (845) Aug-18 21:17:39.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1756; name: POREC:to_pairs_file (845); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4f/5b1ce9693d0bce358911904fda65b4] Aug-18 21:17:40.063 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:17:40.063 [Task submitter] INFO nextflow.Session - [aa/ce8043] Submitted process > POREC:to_pairs_file (846) Aug-18 21:18:29.095 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 60 -- tasks to be submitted are shown below ~> TaskHandler[id: 1758; name: POREC:to_pairs_file (847); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/65d452d6962cd439c19ca6528bda64] ~> TaskHandler[id: 1759; name: POREC:to_pairs_file (848); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/a772feb3201eb330f351154e3025ba] ~> TaskHandler[id: 1760; name: POREC:to_pairs_file (849); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/e22384c12a79bab49a6d7ca3deda80] ~> TaskHandler[id: 1761; name: POREC:to_pairs_file (850); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/190af9848607f51e4426df06c2ad5d] ~> TaskHandler[id: 1762; name: POREC:to_pairs_file (851); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/52af5880cfc02644c3859fa4b64422] ~> TaskHandler[id: 1763; name: POREC:to_pairs_file (852); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/a0877c6180de4c7716a0f5c819ed02] ~> TaskHandler[id: 1764; name: POREC:to_pairs_file (853); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/d7aaf42982cfbd75362220fd5b9017] ~> TaskHandler[id: 1765; name: POREC:to_pairs_file (854); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/2144a8364cf7542d255f6655550281] ~> TaskHandler[id: 1766; name: POREC:to_pairs_file (855); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/666cd38fa557c0a70570b804921498] ~> TaskHandler[id: 1767; name: POREC:to_pairs_file (856); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/36f456b70f7bcbf7ecece7bbead018] .. remaining tasks omitted. Aug-18 21:18:58.728 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1757; name: POREC:to_pairs_file (846); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ce804358d4b1ef248e184a4041d930] Aug-18 21:19:10.885 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1757; name: POREC:to_pairs_file (846); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/ce804358d4b1ef248e184a4041d930] Aug-18 21:19:10.889 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:19:10.889 [Task submitter] INFO nextflow.Session - [59/65d452] Submitted process > POREC:to_pairs_file (847) Aug-18 21:20:44.029 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1758; name: POREC:to_pairs_file (847); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/65d452d6962cd439c19ca6528bda64] Aug-18 21:20:44.035 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:20:44.035 [Task submitter] INFO nextflow.Session - [72/a772fe] Submitted process > POREC:to_pairs_file (848) Aug-18 21:22:12.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1759; name: POREC:to_pairs_file (848); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/a772feb3201eb330f351154e3025ba] Aug-18 21:22:12.082 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:22:12.082 [Task submitter] INFO nextflow.Session - [b5/e22384] Submitted process > POREC:to_pairs_file (849) Aug-18 21:23:29.111 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 57 -- tasks to be submitted are shown below ~> TaskHandler[id: 1761; name: POREC:to_pairs_file (850); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/190af9848607f51e4426df06c2ad5d] ~> TaskHandler[id: 1762; name: POREC:to_pairs_file (851); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/52af5880cfc02644c3859fa4b64422] ~> TaskHandler[id: 1763; name: POREC:to_pairs_file (852); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/a0877c6180de4c7716a0f5c819ed02] ~> TaskHandler[id: 1764; name: POREC:to_pairs_file (853); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/d7aaf42982cfbd75362220fd5b9017] ~> TaskHandler[id: 1765; name: POREC:to_pairs_file (854); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/2144a8364cf7542d255f6655550281] ~> TaskHandler[id: 1766; name: POREC:to_pairs_file (855); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/666cd38fa557c0a70570b804921498] ~> TaskHandler[id: 1767; name: POREC:to_pairs_file (856); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/36f456b70f7bcbf7ecece7bbead018] ~> TaskHandler[id: 1768; name: POREC:to_pairs_file (857); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/3f7e4bc8ab86bcfc842fc67df80c76] ~> TaskHandler[id: 1769; name: POREC:to_pairs_file (858); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/6cc791cf2538fb3d69e026da51acdc] ~> TaskHandler[id: 1770; name: POREC:to_pairs_file (859); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/322ae4ea0455deb04571561a76338c] .. remaining tasks omitted. Aug-18 21:23:41.666 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1760; name: POREC:to_pairs_file (849); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b5/e22384c12a79bab49a6d7ca3deda80] Aug-18 21:23:41.671 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:23:41.671 [Task submitter] INFO nextflow.Session - [72/190af9] Submitted process > POREC:to_pairs_file (850) Aug-18 21:23:58.759 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1761; name: POREC:to_pairs_file (850); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/190af9848607f51e4426df06c2ad5d] Aug-18 21:25:11.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1761; name: POREC:to_pairs_file (850); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/72/190af9848607f51e4426df06c2ad5d] Aug-18 21:25:11.834 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:25:11.834 [Task submitter] INFO nextflow.Session - [59/52af58] Submitted process > POREC:to_pairs_file (851) Aug-18 21:26:47.240 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1762; name: POREC:to_pairs_file (851); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/59/52af5880cfc02644c3859fa4b64422] Aug-18 21:26:47.255 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:26:47.255 [Task submitter] INFO nextflow.Session - [22/a0877c] Submitted process > POREC:to_pairs_file (852) Aug-18 21:28:21.047 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1763; name: POREC:to_pairs_file (852); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/22/a0877c6180de4c7716a0f5c819ed02] Aug-18 21:28:21.094 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:28:21.094 [Task submitter] INFO nextflow.Session - [73/d7aaf4] Submitted process > POREC:to_pairs_file (853) Aug-18 21:28:30.100 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 53 -- tasks to be submitted are shown below ~> TaskHandler[id: 1765; name: POREC:to_pairs_file (854); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/2144a8364cf7542d255f6655550281] ~> TaskHandler[id: 1766; name: POREC:to_pairs_file (855); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/666cd38fa557c0a70570b804921498] ~> TaskHandler[id: 1767; name: POREC:to_pairs_file (856); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/36f456b70f7bcbf7ecece7bbead018] ~> TaskHandler[id: 1768; name: POREC:to_pairs_file (857); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/3f7e4bc8ab86bcfc842fc67df80c76] ~> TaskHandler[id: 1769; name: POREC:to_pairs_file (858); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/6cc791cf2538fb3d69e026da51acdc] ~> TaskHandler[id: 1770; name: POREC:to_pairs_file (859); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/322ae4ea0455deb04571561a76338c] ~> TaskHandler[id: 1771; name: POREC:to_pairs_file (860); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/b63a33a4ca0e0db93dce6de85c9af0] ~> TaskHandler[id: 1772; name: POREC:to_pairs_file (861); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/950615e4030631be3b5ac676cd7972] ~> TaskHandler[id: 1773; name: POREC:to_pairs_file (862); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/b97e96da1d63d1d5fb0c92530e1a5b] ~> TaskHandler[id: 1774; name: POREC:to_pairs_file (863); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/560281b6d28c0f89272359ecc6c476] .. remaining tasks omitted. Aug-18 21:28:58.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1764; name: POREC:to_pairs_file (853); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/d7aaf42982cfbd75362220fd5b9017] Aug-18 21:29:54.266 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1764; name: POREC:to_pairs_file (853); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/d7aaf42982cfbd75362220fd5b9017] Aug-18 21:29:54.303 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:29:54.303 [Task submitter] INFO nextflow.Session - [20/2144a8] Submitted process > POREC:to_pairs_file (854) Aug-18 21:31:26.301 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1765; name: POREC:to_pairs_file (854); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/20/2144a8364cf7542d255f6655550281] Aug-18 21:31:26.334 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:31:26.349 [Task submitter] INFO nextflow.Session - [70/666cd3] Submitted process > POREC:to_pairs_file (855) Aug-18 21:32:59.114 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1766; name: POREC:to_pairs_file (855); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/70/666cd38fa557c0a70570b804921498] Aug-18 21:32:59.118 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:32:59.118 [Task submitter] INFO nextflow.Session - [c4/36f456] Submitted process > POREC:to_pairs_file (856) Aug-18 21:33:30.135 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 50 -- tasks to be submitted are shown below ~> TaskHandler[id: 1768; name: POREC:to_pairs_file (857); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/3f7e4bc8ab86bcfc842fc67df80c76] ~> TaskHandler[id: 1769; name: POREC:to_pairs_file (858); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/6cc791cf2538fb3d69e026da51acdc] ~> TaskHandler[id: 1770; name: POREC:to_pairs_file (859); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/322ae4ea0455deb04571561a76338c] ~> TaskHandler[id: 1771; name: POREC:to_pairs_file (860); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/b63a33a4ca0e0db93dce6de85c9af0] ~> TaskHandler[id: 1772; name: POREC:to_pairs_file (861); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/950615e4030631be3b5ac676cd7972] ~> TaskHandler[id: 1773; name: POREC:to_pairs_file (862); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/b97e96da1d63d1d5fb0c92530e1a5b] ~> TaskHandler[id: 1774; name: POREC:to_pairs_file (863); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/560281b6d28c0f89272359ecc6c476] ~> TaskHandler[id: 1775; name: POREC:to_pairs_file (864); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/eddb28ce99b8be07f45b3665c599fe] ~> TaskHandler[id: 1776; name: POREC:to_pairs_file (865); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/d229e45c7d514c5e0428908ea40007] ~> TaskHandler[id: 1777; name: POREC:to_pairs_file (866); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/e4ddd8cbd7c7bb62320a243513171e] .. remaining tasks omitted. Aug-18 21:33:58.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1767; name: POREC:to_pairs_file (856); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/36f456b70f7bcbf7ecece7bbead018] Aug-18 21:34:30.923 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1767; name: POREC:to_pairs_file (856); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c4/36f456b70f7bcbf7ecece7bbead018] Aug-18 21:34:30.961 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:34:30.961 [Task submitter] INFO nextflow.Session - [e0/3f7e4b] Submitted process > POREC:to_pairs_file (857) Aug-18 21:36:02.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1768; name: POREC:to_pairs_file (857); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e0/3f7e4bc8ab86bcfc842fc67df80c76] Aug-18 21:36:02.828 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:36:02.846 [Task submitter] INFO nextflow.Session - [a5/6cc791] Submitted process > POREC:to_pairs_file (858) Aug-18 21:37:34.679 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1769; name: POREC:to_pairs_file (858); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/6cc791cf2538fb3d69e026da51acdc] Aug-18 21:37:34.683 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:37:34.683 [Task submitter] INFO nextflow.Session - [87/322ae4] Submitted process > POREC:to_pairs_file (859) Aug-18 21:38:30.713 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 47 -- tasks to be submitted are shown below ~> TaskHandler[id: 1771; name: POREC:to_pairs_file (860); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/b63a33a4ca0e0db93dce6de85c9af0] ~> TaskHandler[id: 1772; name: POREC:to_pairs_file (861); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/950615e4030631be3b5ac676cd7972] ~> TaskHandler[id: 1773; name: POREC:to_pairs_file (862); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/b97e96da1d63d1d5fb0c92530e1a5b] ~> TaskHandler[id: 1774; name: POREC:to_pairs_file (863); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/560281b6d28c0f89272359ecc6c476] ~> TaskHandler[id: 1775; name: POREC:to_pairs_file (864); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/eddb28ce99b8be07f45b3665c599fe] ~> TaskHandler[id: 1776; name: POREC:to_pairs_file (865); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/d229e45c7d514c5e0428908ea40007] ~> TaskHandler[id: 1777; name: POREC:to_pairs_file (866); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/e4ddd8cbd7c7bb62320a243513171e] ~> TaskHandler[id: 1778; name: POREC:to_pairs_file (867); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/99d75234b503873bdb3df18027d610] ~> TaskHandler[id: 1779; name: POREC:to_pairs_file (868); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/2132414d208c6517ae3aea13b84497] ~> TaskHandler[id: 1780; name: POREC:to_pairs_file (869); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/6e299dd8c2137ddd4d24acdf8dff8f] .. remaining tasks omitted. Aug-18 21:38:58.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1770; name: POREC:to_pairs_file (859); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/322ae4ea0455deb04571561a76338c] Aug-18 21:39:11.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1770; name: POREC:to_pairs_file (859); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/87/322ae4ea0455deb04571561a76338c] Aug-18 21:39:11.198 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:39:11.198 [Task submitter] INFO nextflow.Session - [14/b63a33] Submitted process > POREC:to_pairs_file (860) Aug-18 21:40:45.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1771; name: POREC:to_pairs_file (860); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/b63a33a4ca0e0db93dce6de85c9af0] Aug-18 21:40:45.841 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:40:45.859 [Task submitter] INFO nextflow.Session - [94/950615] Submitted process > POREC:to_pairs_file (861) Aug-18 21:42:17.401 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1772; name: POREC:to_pairs_file (861); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/94/950615e4030631be3b5ac676cd7972] Aug-18 21:42:17.406 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:42:17.406 [Task submitter] INFO nextflow.Session - [a8/b97e96] Submitted process > POREC:to_pairs_file (862) Aug-18 21:43:31.441 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 44 -- tasks to be submitted are shown below ~> TaskHandler[id: 1774; name: POREC:to_pairs_file (863); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/560281b6d28c0f89272359ecc6c476] ~> TaskHandler[id: 1775; name: POREC:to_pairs_file (864); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/eddb28ce99b8be07f45b3665c599fe] ~> TaskHandler[id: 1776; name: POREC:to_pairs_file (865); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/d229e45c7d514c5e0428908ea40007] ~> TaskHandler[id: 1777; name: POREC:to_pairs_file (866); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/e4ddd8cbd7c7bb62320a243513171e] ~> TaskHandler[id: 1778; name: POREC:to_pairs_file (867); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/99d75234b503873bdb3df18027d610] ~> TaskHandler[id: 1779; name: POREC:to_pairs_file (868); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/2132414d208c6517ae3aea13b84497] ~> TaskHandler[id: 1780; name: POREC:to_pairs_file (869); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/6e299dd8c2137ddd4d24acdf8dff8f] ~> TaskHandler[id: 1781; name: POREC:to_pairs_file (870); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/9bb372608a79366913d98de3875200] ~> TaskHandler[id: 1782; name: POREC:to_pairs_file (871); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/54a29c3e69fcb5d68cd7cee69769ff] ~> TaskHandler[id: 1783; name: POREC:to_pairs_file (872); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/e05bd897d3e271b0867d1c0ff0f31e] .. remaining tasks omitted. Aug-18 21:43:50.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1773; name: POREC:to_pairs_file (862); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/b97e96da1d63d1d5fb0c92530e1a5b] Aug-18 21:43:50.319 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:43:50.320 [Task submitter] INFO nextflow.Session - [fc/560281] Submitted process > POREC:to_pairs_file (863) Aug-18 21:43:58.979 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1774; name: POREC:to_pairs_file (863); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/560281b6d28c0f89272359ecc6c476] Aug-18 21:45:25.671 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1774; name: POREC:to_pairs_file (863); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fc/560281b6d28c0f89272359ecc6c476] Aug-18 21:45:25.676 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:45:25.676 [Task submitter] INFO nextflow.Session - [14/eddb28] Submitted process > POREC:to_pairs_file (864) Aug-18 21:46:57.920 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1775; name: POREC:to_pairs_file (864); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/14/eddb28ce99b8be07f45b3665c599fe] Aug-18 21:46:57.925 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:46:57.925 [Task submitter] INFO nextflow.Session - [42/d229e4] Submitted process > POREC:to_pairs_file (865) Aug-18 21:48:29.265 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1776; name: POREC:to_pairs_file (865); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/42/d229e45c7d514c5e0428908ea40007] Aug-18 21:48:29.270 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:48:29.270 [Task submitter] INFO nextflow.Session - [9d/e4ddd8] Submitted process > POREC:to_pairs_file (866) Aug-18 21:48:32.277 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 40 -- tasks to be submitted are shown below ~> TaskHandler[id: 1778; name: POREC:to_pairs_file (867); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/99d75234b503873bdb3df18027d610] ~> TaskHandler[id: 1779; name: POREC:to_pairs_file (868); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/2132414d208c6517ae3aea13b84497] ~> TaskHandler[id: 1780; name: POREC:to_pairs_file (869); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/6e299dd8c2137ddd4d24acdf8dff8f] ~> TaskHandler[id: 1781; name: POREC:to_pairs_file (870); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/9bb372608a79366913d98de3875200] ~> TaskHandler[id: 1782; name: POREC:to_pairs_file (871); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/54a29c3e69fcb5d68cd7cee69769ff] ~> TaskHandler[id: 1783; name: POREC:to_pairs_file (872); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/e05bd897d3e271b0867d1c0ff0f31e] ~> TaskHandler[id: 1784; name: POREC:to_pairs_file (873); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/010420a9d7151ce0e97b2fe8f5cd57] ~> TaskHandler[id: 1785; name: POREC:to_pairs_file (874); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/54f447478dec278740453720c273c8] ~> TaskHandler[id: 1786; name: POREC:to_pairs_file (875); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/e8f9ac91e74de0f844d8a18d0eae14] ~> TaskHandler[id: 1787; name: POREC:to_pairs_file (876); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/3575902c4aa202f281ef105b468aa3] .. remaining tasks omitted. Aug-18 21:48:59.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1777; name: POREC:to_pairs_file (866); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/e4ddd8cbd7c7bb62320a243513171e] Aug-18 21:49:59.691 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1777; name: POREC:to_pairs_file (866); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/9d/e4ddd8cbd7c7bb62320a243513171e] Aug-18 21:49:59.696 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:49:59.696 [Task submitter] INFO nextflow.Session - [2f/99d752] Submitted process > POREC:to_pairs_file (867) Aug-18 21:51:34.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1778; name: POREC:to_pairs_file (867); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2f/99d75234b503873bdb3df18027d610] Aug-18 21:51:34.115 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:51:34.115 [Task submitter] INFO nextflow.Session - [4e/213241] Submitted process > POREC:to_pairs_file (868) Aug-18 21:53:05.397 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1779; name: POREC:to_pairs_file (868); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4e/2132414d208c6517ae3aea13b84497] Aug-18 21:53:05.409 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:53:05.409 [Task submitter] INFO nextflow.Session - [27/6e299d] Submitted process > POREC:to_pairs_file (869) Aug-18 21:53:32.427 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 37 -- tasks to be submitted are shown below ~> TaskHandler[id: 1781; name: POREC:to_pairs_file (870); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/9bb372608a79366913d98de3875200] ~> TaskHandler[id: 1782; name: POREC:to_pairs_file (871); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/54a29c3e69fcb5d68cd7cee69769ff] ~> TaskHandler[id: 1783; name: POREC:to_pairs_file (872); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/e05bd897d3e271b0867d1c0ff0f31e] ~> TaskHandler[id: 1784; name: POREC:to_pairs_file (873); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/010420a9d7151ce0e97b2fe8f5cd57] ~> TaskHandler[id: 1785; name: POREC:to_pairs_file (874); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/54f447478dec278740453720c273c8] ~> TaskHandler[id: 1786; name: POREC:to_pairs_file (875); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/e8f9ac91e74de0f844d8a18d0eae14] ~> TaskHandler[id: 1787; name: POREC:to_pairs_file (876); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/3575902c4aa202f281ef105b468aa3] ~> TaskHandler[id: 1788; name: POREC:to_pairs_file (877); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/94a6cd00bfd14839cc8c6c4b7e8ed6] ~> TaskHandler[id: 1789; name: POREC:to_pairs_file (878); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/639cd1bb4d10f052fe834b85255b4e] ~> TaskHandler[id: 1790; name: POREC:to_pairs_file (879); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/506d2f1c67360d7e417b0a6ff4c7b1] .. remaining tasks omitted. Aug-18 21:53:59.059 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1780; name: POREC:to_pairs_file (869); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/6e299dd8c2137ddd4d24acdf8dff8f] Aug-18 21:54:38.058 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1780; name: POREC:to_pairs_file (869); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/27/6e299dd8c2137ddd4d24acdf8dff8f] Aug-18 21:54:38.066 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:54:38.066 [Task submitter] INFO nextflow.Session - [ca/9bb372] Submitted process > POREC:to_pairs_file (870) Aug-18 21:56:08.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1781; name: POREC:to_pairs_file (870); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ca/9bb372608a79366913d98de3875200] Aug-18 21:56:08.935 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:56:08.935 [Task submitter] INFO nextflow.Session - [28/54a29c] Submitted process > POREC:to_pairs_file (871) Aug-18 21:57:41.398 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1782; name: POREC:to_pairs_file (871); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/28/54a29c3e69fcb5d68cd7cee69769ff] Aug-18 21:57:41.403 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:57:41.403 [Task submitter] INFO nextflow.Session - [ce/e05bd8] Submitted process > POREC:to_pairs_file (872) Aug-18 21:58:33.427 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 34 -- tasks to be submitted are shown below ~> TaskHandler[id: 1784; name: POREC:to_pairs_file (873); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/010420a9d7151ce0e97b2fe8f5cd57] ~> TaskHandler[id: 1785; name: POREC:to_pairs_file (874); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/54f447478dec278740453720c273c8] ~> TaskHandler[id: 1786; name: POREC:to_pairs_file (875); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/e8f9ac91e74de0f844d8a18d0eae14] ~> TaskHandler[id: 1787; name: POREC:to_pairs_file (876); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/3575902c4aa202f281ef105b468aa3] ~> TaskHandler[id: 1788; name: POREC:to_pairs_file (877); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/94a6cd00bfd14839cc8c6c4b7e8ed6] ~> TaskHandler[id: 1789; name: POREC:to_pairs_file (878); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/639cd1bb4d10f052fe834b85255b4e] ~> TaskHandler[id: 1790; name: POREC:to_pairs_file (879); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/506d2f1c67360d7e417b0a6ff4c7b1] ~> TaskHandler[id: 1791; name: POREC:to_pairs_file (880); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/150095e948d9530bc71340da532c05] ~> TaskHandler[id: 1792; name: POREC:to_pairs_file (881); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/94a9b3cc2cf2f374ae8d39fcfdeddd] ~> TaskHandler[id: 1793; name: POREC:to_pairs_file (882); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/4062461ca1d98f167f6e4e1175204f] .. remaining tasks omitted. Aug-18 21:58:59.096 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1783; name: POREC:to_pairs_file (872); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/e05bd897d3e271b0867d1c0ff0f31e] Aug-18 21:59:12.492 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1783; name: POREC:to_pairs_file (872); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ce/e05bd897d3e271b0867d1c0ff0f31e] Aug-18 21:59:12.498 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 21:59:12.498 [Task submitter] INFO nextflow.Session - [1c/010420] Submitted process > POREC:to_pairs_file (873) Aug-18 22:00:41.133 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1784; name: POREC:to_pairs_file (873); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/1c/010420a9d7151ce0e97b2fe8f5cd57] Aug-18 22:00:41.156 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:00:41.156 [Task submitter] INFO nextflow.Session - [f6/54f447] Submitted process > POREC:to_pairs_file (874) Aug-18 22:02:13.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1785; name: POREC:to_pairs_file (874); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/54f447478dec278740453720c273c8] Aug-18 22:02:13.573 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:02:13.574 [Task submitter] INFO nextflow.Session - [bb/e8f9ac] Submitted process > POREC:to_pairs_file (875) Aug-18 22:03:33.598 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 31 -- tasks to be submitted are shown below ~> TaskHandler[id: 1787; name: POREC:to_pairs_file (876); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/3575902c4aa202f281ef105b468aa3] ~> TaskHandler[id: 1788; name: POREC:to_pairs_file (877); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/94a6cd00bfd14839cc8c6c4b7e8ed6] ~> TaskHandler[id: 1789; name: POREC:to_pairs_file (878); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/639cd1bb4d10f052fe834b85255b4e] ~> TaskHandler[id: 1790; name: POREC:to_pairs_file (879); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/506d2f1c67360d7e417b0a6ff4c7b1] ~> TaskHandler[id: 1791; name: POREC:to_pairs_file (880); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/150095e948d9530bc71340da532c05] ~> TaskHandler[id: 1792; name: POREC:to_pairs_file (881); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/94a9b3cc2cf2f374ae8d39fcfdeddd] ~> TaskHandler[id: 1793; name: POREC:to_pairs_file (882); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/4062461ca1d98f167f6e4e1175204f] ~> TaskHandler[id: 1794; name: POREC:to_pairs_file (883); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/d8cf5482cfd9529442f8b0440cda20] ~> TaskHandler[id: 1795; name: POREC:to_pairs_file (884); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/cf66107085f34e5d8872a7b5453540] ~> TaskHandler[id: 1796; name: POREC:to_pairs_file (885); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/3a59a56b10f08031b6ef48d4b5ddc9] .. remaining tasks omitted. Aug-18 22:03:42.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1786; name: POREC:to_pairs_file (875); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bb/e8f9ac91e74de0f844d8a18d0eae14] Aug-18 22:03:42.657 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:03:42.657 [Task submitter] INFO nextflow.Session - [03/357590] Submitted process > POREC:to_pairs_file (876) Aug-18 22:03:59.169 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1787; name: POREC:to_pairs_file (876); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/3575902c4aa202f281ef105b468aa3] Aug-18 22:05:14.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1787; name: POREC:to_pairs_file (876); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/03/3575902c4aa202f281ef105b468aa3] Aug-18 22:05:14.133 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:05:14.133 [Task submitter] INFO nextflow.Session - [eb/94a6cd] Submitted process > POREC:to_pairs_file (877) Aug-18 22:06:44.755 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1788; name: POREC:to_pairs_file (877); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/eb/94a6cd00bfd14839cc8c6c4b7e8ed6] Aug-18 22:06:44.761 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:06:44.761 [Task submitter] INFO nextflow.Session - [a6/639cd1] Submitted process > POREC:to_pairs_file (878) Aug-18 22:08:13.683 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1789; name: POREC:to_pairs_file (878); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a6/639cd1bb4d10f052fe834b85255b4e] Aug-18 22:08:13.689 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:08:13.690 [Task submitter] INFO nextflow.Session - [e9/506d2f] Submitted process > POREC:to_pairs_file (879) Aug-18 22:08:33.696 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 27 -- tasks to be submitted are shown below ~> TaskHandler[id: 1791; name: POREC:to_pairs_file (880); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/150095e948d9530bc71340da532c05] ~> TaskHandler[id: 1792; name: POREC:to_pairs_file (881); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/94a9b3cc2cf2f374ae8d39fcfdeddd] ~> TaskHandler[id: 1793; name: POREC:to_pairs_file (882); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/4062461ca1d98f167f6e4e1175204f] ~> TaskHandler[id: 1794; name: POREC:to_pairs_file (883); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/d8cf5482cfd9529442f8b0440cda20] ~> TaskHandler[id: 1795; name: POREC:to_pairs_file (884); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/cf66107085f34e5d8872a7b5453540] ~> TaskHandler[id: 1796; name: POREC:to_pairs_file (885); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/3a59a56b10f08031b6ef48d4b5ddc9] ~> TaskHandler[id: 1797; name: POREC:to_pairs_file (886); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/97038097974e8c788a4ece083e9ba4] ~> TaskHandler[id: 1798; name: POREC:to_pairs_file (887); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/d74cfb5eb295d21027327da0ed7c79] ~> TaskHandler[id: 1799; name: POREC:to_pairs_file (888); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/786a19af795a5ab600313b90b6a26d] ~> TaskHandler[id: 1800; name: POREC:to_pairs_file (889); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/c78861457b64a2a4afa044f7bddf92] .. remaining tasks omitted. Aug-18 22:08:59.241 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1790; name: POREC:to_pairs_file (879); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/506d2f1c67360d7e417b0a6ff4c7b1] Aug-18 22:09:42.251 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1790; name: POREC:to_pairs_file (879); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e9/506d2f1c67360d7e417b0a6ff4c7b1] Aug-18 22:09:42.260 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:09:42.260 [Task submitter] INFO nextflow.Session - [07/150095] Submitted process > POREC:to_pairs_file (880) Aug-18 22:11:09.134 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1791; name: POREC:to_pairs_file (880); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/07/150095e948d9530bc71340da532c05] Aug-18 22:11:09.145 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:11:09.145 [Task submitter] INFO nextflow.Session - [66/94a9b3] Submitted process > POREC:to_pairs_file (881) Aug-18 22:12:37.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1792; name: POREC:to_pairs_file (881); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/66/94a9b3cc2cf2f374ae8d39fcfdeddd] Aug-18 22:12:37.084 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:12:37.084 [Task submitter] INFO nextflow.Session - [a3/406246] Submitted process > POREC:to_pairs_file (882) Aug-18 22:13:34.103 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 24 -- tasks to be submitted are shown below ~> TaskHandler[id: 1794; name: POREC:to_pairs_file (883); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/d8cf5482cfd9529442f8b0440cda20] ~> TaskHandler[id: 1795; name: POREC:to_pairs_file (884); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/cf66107085f34e5d8872a7b5453540] ~> TaskHandler[id: 1796; name: POREC:to_pairs_file (885); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/3a59a56b10f08031b6ef48d4b5ddc9] ~> TaskHandler[id: 1797; name: POREC:to_pairs_file (886); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/97038097974e8c788a4ece083e9ba4] ~> TaskHandler[id: 1798; name: POREC:to_pairs_file (887); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/d74cfb5eb295d21027327da0ed7c79] ~> TaskHandler[id: 1799; name: POREC:to_pairs_file (888); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/786a19af795a5ab600313b90b6a26d] ~> TaskHandler[id: 1800; name: POREC:to_pairs_file (889); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/c78861457b64a2a4afa044f7bddf92] ~> TaskHandler[id: 1801; name: POREC:to_pairs_file (890); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a515af78b444e75facb0602b533352] ~> TaskHandler[id: 1802; name: POREC:to_pairs_file (891); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/023910534a812225171be8b0b60852] ~> TaskHandler[id: 1803; name: POREC:to_pairs_file (892); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/b2d923da22d0e8b480f6188b717d14] .. remaining tasks omitted. Aug-18 22:13:59.278 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1793; name: POREC:to_pairs_file (882); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/4062461ca1d98f167f6e4e1175204f] Aug-18 22:14:04.278 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1793; name: POREC:to_pairs_file (882); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a3/4062461ca1d98f167f6e4e1175204f] Aug-18 22:14:04.284 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:14:04.285 [Task submitter] INFO nextflow.Session - [fa/d8cf54] Submitted process > POREC:to_pairs_file (883) Aug-18 22:15:33.598 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1794; name: POREC:to_pairs_file (883); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/fa/d8cf5482cfd9529442f8b0440cda20] Aug-18 22:15:33.614 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:15:33.614 [Task submitter] INFO nextflow.Session - [7d/cf6610] Submitted process > POREC:to_pairs_file (884) Aug-18 22:17:02.039 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1795; name: POREC:to_pairs_file (884); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/7d/cf66107085f34e5d8872a7b5453540] Aug-18 22:17:02.047 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:17:02.047 [Task submitter] INFO nextflow.Session - [cf/3a59a5] Submitted process > POREC:to_pairs_file (885) Aug-18 22:18:29.443 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1796; name: POREC:to_pairs_file (885); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/cf/3a59a56b10f08031b6ef48d4b5ddc9] Aug-18 22:18:29.448 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:18:29.448 [Task submitter] INFO nextflow.Session - [75/970380] Submitted process > POREC:to_pairs_file (886) Aug-18 22:18:34.450 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 20 -- tasks to be submitted are shown below ~> TaskHandler[id: 1798; name: POREC:to_pairs_file (887); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/d74cfb5eb295d21027327da0ed7c79] ~> TaskHandler[id: 1799; name: POREC:to_pairs_file (888); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/786a19af795a5ab600313b90b6a26d] ~> TaskHandler[id: 1800; name: POREC:to_pairs_file (889); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/c78861457b64a2a4afa044f7bddf92] ~> TaskHandler[id: 1801; name: POREC:to_pairs_file (890); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a515af78b444e75facb0602b533352] ~> TaskHandler[id: 1802; name: POREC:to_pairs_file (891); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/023910534a812225171be8b0b60852] ~> TaskHandler[id: 1803; name: POREC:to_pairs_file (892); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/b2d923da22d0e8b480f6188b717d14] ~> TaskHandler[id: 1804; name: POREC:to_pairs_file (893); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/58820b820c318b64db8fb9e5bf16ab] ~> TaskHandler[id: 1805; name: POREC:to_pairs_file (894); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/f670ee52cb78936b0be52a09e474d6] ~> TaskHandler[id: 1806; name: POREC:to_pairs_file (895); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/097ae820e4dd635ccbd4531119eab6] ~> TaskHandler[id: 1807; name: POREC:to_pairs_file (896); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/4fa2b966ae00441adc0babe8b8406f] .. remaining tasks omitted. Aug-18 22:18:59.281 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1797; name: POREC:to_pairs_file (886); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/97038097974e8c788a4ece083e9ba4] Aug-18 22:19:57.041 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1797; name: POREC:to_pairs_file (886); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/75/97038097974e8c788a4ece083e9ba4] Aug-18 22:19:57.047 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:19:57.047 [Task submitter] INFO nextflow.Session - [ff/d74cfb] Submitted process > POREC:to_pairs_file (887) Aug-18 22:21:23.575 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1798; name: POREC:to_pairs_file (887); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ff/d74cfb5eb295d21027327da0ed7c79] Aug-18 22:21:23.583 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:21:23.583 [Task submitter] INFO nextflow.Session - [c9/786a19] Submitted process > POREC:to_pairs_file (888) Aug-18 22:22:50.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1799; name: POREC:to_pairs_file (888); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c9/786a19af795a5ab600313b90b6a26d] Aug-18 22:22:50.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:22:50.062 [Task submitter] INFO nextflow.Session - [bc/c78861] Submitted process > POREC:to_pairs_file (889) Aug-18 22:23:35.077 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 17 -- tasks to be submitted are shown below ~> TaskHandler[id: 1801; name: POREC:to_pairs_file (890); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a515af78b444e75facb0602b533352] ~> TaskHandler[id: 1802; name: POREC:to_pairs_file (891); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/023910534a812225171be8b0b60852] ~> TaskHandler[id: 1803; name: POREC:to_pairs_file (892); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/b2d923da22d0e8b480f6188b717d14] ~> TaskHandler[id: 1804; name: POREC:to_pairs_file (893); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/58820b820c318b64db8fb9e5bf16ab] ~> TaskHandler[id: 1805; name: POREC:to_pairs_file (894); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/f670ee52cb78936b0be52a09e474d6] ~> TaskHandler[id: 1806; name: POREC:to_pairs_file (895); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/097ae820e4dd635ccbd4531119eab6] ~> TaskHandler[id: 1807; name: POREC:to_pairs_file (896); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/4fa2b966ae00441adc0babe8b8406f] ~> TaskHandler[id: 1808; name: POREC:to_pairs_file (897); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/73d7ff4cc785d3a8b5528ccc315fe7] ~> TaskHandler[id: 1809; name: POREC:to_pairs_file (898); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/a3bb69688682a26bd4d034e7300ef0] ~> TaskHandler[id: 1810; name: POREC:to_pairs_file (899); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c6ed5fca9fcfef2eaf93c57dc5fd74] .. remaining tasks omitted. Aug-18 22:23:59.349 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1800; name: POREC:to_pairs_file (889); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/c78861457b64a2a4afa044f7bddf92] Aug-18 22:24:17.612 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1800; name: POREC:to_pairs_file (889); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/bc/c78861457b64a2a4afa044f7bddf92] Aug-18 22:24:17.619 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:24:17.619 [Task submitter] INFO nextflow.Session - [ea/a515af] Submitted process > POREC:to_pairs_file (890) Aug-18 22:25:44.094 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1801; name: POREC:to_pairs_file (890); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ea/a515af78b444e75facb0602b533352] Aug-18 22:25:44.100 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:25:44.100 [Task submitter] INFO nextflow.Session - [73/023910] Submitted process > POREC:to_pairs_file (891) Aug-18 22:27:11.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1802; name: POREC:to_pairs_file (891); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/73/023910534a812225171be8b0b60852] Aug-18 22:27:11.788 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:27:11.789 [Task submitter] INFO nextflow.Session - [4a/b2d923] Submitted process > POREC:to_pairs_file (892) Aug-18 22:28:35.806 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 14 -- tasks to be submitted are shown below ~> TaskHandler[id: 1804; name: POREC:to_pairs_file (893); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/58820b820c318b64db8fb9e5bf16ab] ~> TaskHandler[id: 1805; name: POREC:to_pairs_file (894); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/f670ee52cb78936b0be52a09e474d6] ~> TaskHandler[id: 1806; name: POREC:to_pairs_file (895); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/097ae820e4dd635ccbd4531119eab6] ~> TaskHandler[id: 1807; name: POREC:to_pairs_file (896); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/4fa2b966ae00441adc0babe8b8406f] ~> TaskHandler[id: 1808; name: POREC:to_pairs_file (897); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/73d7ff4cc785d3a8b5528ccc315fe7] ~> TaskHandler[id: 1809; name: POREC:to_pairs_file (898); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/a3bb69688682a26bd4d034e7300ef0] ~> TaskHandler[id: 1810; name: POREC:to_pairs_file (899); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c6ed5fca9fcfef2eaf93c57dc5fd74] ~> TaskHandler[id: 1811; name: POREC:to_pairs_file (900); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/c007e9f789c91697194b1323b1852d] ~> TaskHandler[id: 1812; name: POREC:to_pairs_file (901); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/e7140503b04873e5ca271ee9329f20] ~> TaskHandler[id: 1813; name: POREC:to_pairs_file (902); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/0cecdae2d00281b506f8990f2d9fbb] .. remaining tasks omitted. Aug-18 22:28:39.730 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1803; name: POREC:to_pairs_file (892); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/4a/b2d923da22d0e8b480f6188b717d14] Aug-18 22:28:39.750 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:28:39.750 [Task submitter] INFO nextflow.Session - [aa/58820b] Submitted process > POREC:to_pairs_file (893) Aug-18 22:28:59.448 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1804; name: POREC:to_pairs_file (893); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/58820b820c318b64db8fb9e5bf16ab] Aug-18 22:30:06.971 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1804; name: POREC:to_pairs_file (893); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/aa/58820b820c318b64db8fb9e5bf16ab] Aug-18 22:30:06.976 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:30:06.976 [Task submitter] INFO nextflow.Session - [18/f670ee] Submitted process > POREC:to_pairs_file (894) Aug-18 22:31:35.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1805; name: POREC:to_pairs_file (894); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/f670ee52cb78936b0be52a09e474d6] Aug-18 22:31:35.619 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:31:35.619 [Task submitter] INFO nextflow.Session - [6e/097ae8] Submitted process > POREC:to_pairs_file (895) Aug-18 22:33:02.806 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1806; name: POREC:to_pairs_file (895); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/097ae820e4dd635ccbd4531119eab6] Aug-18 22:33:02.812 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:33:02.812 [Task submitter] INFO nextflow.Session - [c8/4fa2b9] Submitted process > POREC:to_pairs_file (896) Aug-18 22:33:35.818 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 10 -- tasks to be submitted are shown below ~> TaskHandler[id: 1808; name: POREC:to_pairs_file (897); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/73d7ff4cc785d3a8b5528ccc315fe7] ~> TaskHandler[id: 1809; name: POREC:to_pairs_file (898); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/a3bb69688682a26bd4d034e7300ef0] ~> TaskHandler[id: 1810; name: POREC:to_pairs_file (899); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c6ed5fca9fcfef2eaf93c57dc5fd74] ~> TaskHandler[id: 1811; name: POREC:to_pairs_file (900); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/c007e9f789c91697194b1323b1852d] ~> TaskHandler[id: 1812; name: POREC:to_pairs_file (901); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/e7140503b04873e5ca271ee9329f20] ~> TaskHandler[id: 1813; name: POREC:to_pairs_file (902); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/0cecdae2d00281b506f8990f2d9fbb] ~> TaskHandler[id: 1817; name: POREC:get_filtered_out_bam (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/540f3e371183cf576657d49432faa5] ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] Aug-18 22:33:59.476 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1807; name: POREC:to_pairs_file (896); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/4fa2b966ae00441adc0babe8b8406f] Aug-18 22:34:30.154 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1807; name: POREC:to_pairs_file (896); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c8/4fa2b966ae00441adc0babe8b8406f] Aug-18 22:34:30.162 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:34:30.162 [Task submitter] INFO nextflow.Session - [5d/73d7ff] Submitted process > POREC:to_pairs_file (897) Aug-18 22:35:58.289 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1808; name: POREC:to_pairs_file (897); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/73d7ff4cc785d3a8b5528ccc315fe7] Aug-18 22:35:58.295 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:35:58.295 [Task submitter] INFO nextflow.Session - [e7/a3bb69] Submitted process > POREC:to_pairs_file (898) Aug-18 22:37:27.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1809; name: POREC:to_pairs_file (898); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/e7/a3bb69688682a26bd4d034e7300ef0] Aug-18 22:37:27.196 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:37:27.196 [Task submitter] INFO nextflow.Session - [18/c6ed5f] Submitted process > POREC:to_pairs_file (899) Aug-18 22:38:36.210 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 7 -- tasks to be submitted are shown below ~> TaskHandler[id: 1811; name: POREC:to_pairs_file (900); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/c007e9f789c91697194b1323b1852d] ~> TaskHandler[id: 1812; name: POREC:to_pairs_file (901); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/e7140503b04873e5ca271ee9329f20] ~> TaskHandler[id: 1813; name: POREC:to_pairs_file (902); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/0cecdae2d00281b506f8990f2d9fbb] ~> TaskHandler[id: 1817; name: POREC:get_filtered_out_bam (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/540f3e371183cf576657d49432faa5] ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] Aug-18 22:38:54.854 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1810; name: POREC:to_pairs_file (899); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/18/c6ed5fca9fcfef2eaf93c57dc5fd74] Aug-18 22:38:54.868 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:38:54.868 [Task submitter] INFO nextflow.Session - [6e/c007e9] Submitted process > POREC:to_pairs_file (900) Aug-18 22:38:59.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1811; name: POREC:to_pairs_file (900); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/c007e9f789c91697194b1323b1852d] Aug-18 22:40:21.929 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1811; name: POREC:to_pairs_file (900); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/6e/c007e9f789c91697194b1323b1852d] Aug-18 22:40:21.936 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:40:21.936 [Task submitter] INFO nextflow.Session - [f6/e71405] Submitted process > POREC:to_pairs_file (901) Aug-18 22:41:50.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1812; name: POREC:to_pairs_file (901); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f6/e7140503b04873e5ca271ee9329f20] Aug-18 22:41:50.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:41:50.234 [Task submitter] INFO nextflow.Session - [5d/0cecda] Submitted process > POREC:to_pairs_file (902) Aug-18 22:43:18.122 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1813; name: POREC:to_pairs_file (902); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/5d/0cecdae2d00281b506f8990f2d9fbb] Aug-18 22:43:18.183 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:43:18.183 [Task submitter] INFO nextflow.Session - [a8/540f3e] Submitted process > POREC:get_filtered_out_bam (1) Aug-18 22:43:37.189 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 5 -- tasks to be submitted are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 22:43:59.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1817; name: POREC:get_filtered_out_bam (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/540f3e371183cf576657d49432faa5] Aug-18 22:48:37.274 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 5 -- tasks to be submitted are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 22:48:59.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1817; name: POREC:get_filtered_out_bam (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/540f3e371183cf576657d49432faa5] Aug-18 22:53:18.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1817; name: POREC:get_filtered_out_bam (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a8/540f3e371183cf576657d49432faa5] Aug-18 22:53:18.249 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-18 22:53:18.250 [Task submitter] INFO nextflow.Session - [2a/f47d28] Submitted process > POREC:merge_coordsorted_bams (1) Aug-18 22:53:38.256 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 22:53:59.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 22:58:38.310 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 22:58:59.670 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:03:38.393 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:03:59.718 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:08:38.453 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:08:59.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:13:38.511 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:13:59.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:18:38.558 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:18:59.826 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:23:38.608 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:23:59.881 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:28:38.693 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:28:59.888 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:33:38.758 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:33:59.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:38:38.864 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:39:00.011 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:43:38.931 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:44:00.082 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:48:39.005 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:49:00.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:53:39.070 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:54:00.163 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-18 23:58:39.142 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-18 23:59:00.256 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:03:39.216 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:04:00.357 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:08:39.292 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:09:00.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:13:39.366 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:14:00.449 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:18:39.441 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:19:00.491 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:23:39.521 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:24:00.584 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:28:39.618 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:29:00.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:33:39.727 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:34:00.679 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:38:39.794 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:39:00.724 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:43:39.856 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:44:00.798 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:48:39.922 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:49:00.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:53:39.978 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:54:00.918 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 00:58:40.045 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 00:59:00.950 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:03:40.109 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:04:01.004 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:08:40.174 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:09:01.029 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:13:40.239 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:14:01.111 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:18:40.310 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:19:01.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:23:40.368 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:24:01.242 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:28:40.440 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:29:01.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:33:40.517 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:34:01.338 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:38:40.585 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:39:01.363 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:43:40.654 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:44:01.443 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:48:40.712 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:49:01.481 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:53:40.809 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:54:01.550 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 01:58:40.926 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 01:59:01.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:03:40.984 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:04:01.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:08:41.056 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:09:01.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:13:41.121 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:14:01.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:18:41.185 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:19:01.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:23:41.248 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:24:01.788 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:28:41.313 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:29:01.797 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:33:41.397 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:34:01.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:38:41.530 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:39:01.920 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:43:41.602 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:44:01.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:48:41.708 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:49:01.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:53:41.789 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:54:01.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 02:58:41.890 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 02:59:02.039 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:03:42.000 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:04:02.083 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:08:42.090 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:09:02.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:13:42.149 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:14:02.150 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:18:42.238 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:19:02.200 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:23:42.355 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:24:02.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:28:42.460 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:29:02.291 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:33:42.538 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:34:02.370 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:38:42.611 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:39:02.418 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:43:42.708 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:44:02.482 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:48:42.793 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:49:02.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:53:42.891 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:54:02.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 03:58:42.964 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 03:59:02.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:03:43.104 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:04:02.589 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:08:43.207 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:09:02.600 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:13:43.265 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:14:02.687 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:18:43.336 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:19:02.712 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:23:43.403 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:24:02.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:28:43.475 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:29:02.804 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:33:43.527 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:34:02.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:38:43.576 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:39:02.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:43:43.634 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:44:02.980 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:48:43.734 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:49:03.020 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:53:43.811 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:54:03.049 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 04:58:43.909 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 04:59:03.130 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:03:43.985 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:04:03.159 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:08:44.061 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:09:03.186 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:13:44.181 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:14:03.198 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:18:44.265 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:19:03.287 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:23:44.355 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:24:03.346 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:28:44.454 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:29:03.406 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:33:44.515 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:34:03.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:38:44.581 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:39:03.516 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:43:44.649 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:44:03.564 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:48:44.741 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:49:03.656 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:53:44.884 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:54:03.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 05:58:44.968 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 05:59:03.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:03:45.036 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:04:03.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:08:45.133 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:09:03.875 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:13:45.268 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:14:03.916 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:18:45.400 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:19:03.958 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:23:45.542 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:24:03.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:28:45.648 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:29:04.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:33:45.782 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:34:04.099 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:38:45.915 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:39:04.124 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:43:46.001 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:44:04.188 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:48:46.078 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:49:04.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:53:46.158 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:54:04.352 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 06:58:46.243 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 06:59:04.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:03:46.321 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:04:04.518 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:08:46.399 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:09:04.616 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:13:46.493 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:14:04.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:18:46.595 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:19:04.782 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:23:46.721 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:24:04.871 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:28:46.832 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:29:04.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:33:46.934 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:34:05.045 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:38:47.034 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:39:05.113 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:43:47.141 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:44:05.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:48:47.215 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:49:05.222 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:53:47.310 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:54:05.279 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 07:58:47.445 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 07:59:05.373 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:03:47.548 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:04:05.420 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:08:47.611 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:09:05.453 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:13:47.696 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:14:05.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:18:47.806 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:19:05.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:23:47.890 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:24:05.664 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:28:47.974 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:29:05.743 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:33:48.058 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:34:05.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:38:48.168 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:39:05.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:43:48.329 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:44:05.854 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:48:48.486 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:49:05.916 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:53:48.583 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:54:05.983 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 08:58:48.670 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 08:59:06.024 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:03:48.748 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:04:06.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:08:48.826 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:09:06.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:13:48.926 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:14:06.210 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:18:49.027 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:19:06.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:23:49.138 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:24:06.350 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:28:49.207 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:29:06.436 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:33:49.315 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:34:06.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:38:49.377 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:39:06.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:43:49.462 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:44:06.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:48:49.537 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:49:06.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:53:49.630 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:54:06.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 09:58:49.694 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 09:59:06.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:03:49.758 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:04:06.829 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:08:49.830 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:09:06.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:13:49.938 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:14:06.911 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:18:50.041 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:19:06.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:23:50.108 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:24:06.925 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:28:50.212 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:29:06.966 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:33:50.298 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:34:06.991 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:38:50.375 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:39:07.073 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:43:50.452 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:44:07.098 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:48:50.520 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:49:07.184 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:53:50.624 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:54:07.277 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 10:58:50.708 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 10:59:07.281 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:03:50.779 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:04:07.378 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:08:50.889 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:09:07.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:13:50.967 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:14:07.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:18:51.050 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:19:07.519 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:23:51.120 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:24:07.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:28:51.249 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:29:07.647 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:33:51.319 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:34:07.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:38:51.394 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:39:07.738 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:43:51.464 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:44:07.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:48:51.568 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:49:07.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:53:51.672 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:54:07.902 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 11:58:51.735 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 11:59:07.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:03:51.820 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:04:08.073 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:08:51.930 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:09:08.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:13:52.121 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:14:08.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:18:52.254 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:19:08.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:23:52.365 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:24:08.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:28:52.461 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:29:08.414 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:33:52.609 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:34:08.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:38:52.691 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:39:08.549 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:43:52.780 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:44:08.592 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:48:52.863 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:49:08.636 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:53:52.931 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:54:08.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 12:58:52.996 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 12:59:08.782 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:03:53.069 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:04:08.838 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:08:53.137 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:09:08.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:13:53.230 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:14:08.973 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:18:53.301 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:19:09.011 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:23:53.384 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:24:09.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:28:53.464 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:29:09.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:33:53.546 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:34:09.183 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:38:53.660 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:39:09.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:43:53.739 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:44:09.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:48:53.800 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:49:09.336 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:53:53.883 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:54:09.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 13:58:53.960 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 13:59:09.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:03:54.039 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:04:09.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:08:54.103 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:09:09.549 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:13:54.188 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:14:09.593 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:18:54.281 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:19:09.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:23:54.360 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:24:09.708 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:28:54.424 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:29:09.728 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:33:54.492 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:34:09.793 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:38:54.563 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:39:09.813 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:43:54.706 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:44:09.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:48:54.787 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:49:09.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:53:54.883 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:54:09.871 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 14:58:54.958 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 14:59:09.898 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:03:55.029 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:04:09.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:08:55.108 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:09:09.964 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:13:55.184 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:14:09.969 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:18:55.266 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:19:10.042 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:23:55.330 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:24:10.048 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:28:55.404 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:29:10.065 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:33:55.521 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:34:10.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:38:55.682 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:39:10.211 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:43:55.753 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:44:10.250 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:48:55.878 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:49:10.257 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:53:55.959 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:54:10.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 15:58:56.042 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 15:59:10.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:03:56.127 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:04:10.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:08:56.204 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:09:10.486 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:13:56.265 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:14:10.568 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:18:56.362 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:19:10.595 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:23:56.476 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:24:10.604 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:28:56.584 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:29:10.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:33:56.668 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:34:10.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:38:56.753 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:39:10.762 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:43:56.817 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:44:10.823 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:48:56.879 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:49:10.885 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:53:56.956 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:54:10.932 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 16:58:57.030 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 16:59:11.029 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:03:57.101 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:04:11.095 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:08:57.161 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:09:11.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:13:57.230 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:14:11.166 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:18:57.347 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:19:11.230 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:23:57.459 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:24:11.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:28:57.538 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:29:11.381 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:33:57.625 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:34:11.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:38:57.695 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:39:11.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:43:57.777 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:44:11.464 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:48:57.855 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:49:11.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:53:57.979 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:54:11.583 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 17:58:58.030 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 17:59:11.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:03:58.143 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:04:11.597 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:08:58.232 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:09:11.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:13:58.320 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:14:11.666 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:18:58.498 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:19:11.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:23:58.674 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:24:11.785 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:28:58.784 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:29:11.861 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:33:58.841 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:34:11.914 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:38:58.934 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:39:11.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:43:59.032 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:44:11.924 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:48:59.140 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:49:11.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:53:59.212 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:54:11.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 18:58:59.402 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 18:59:12.002 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:03:59.467 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:04:12.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:08:59.567 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:09:12.136 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:13:59.615 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:14:12.207 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:18:59.673 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:19:12.288 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:23:59.864 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:24:12.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:29:00.083 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:29:12.414 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:34:00.319 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:34:12.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:39:00.431 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:39:12.516 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:44:00.521 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:44:12.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:49:00.666 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:49:12.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:54:00.770 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:54:12.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 19:59:00.902 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 19:59:12.686 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:04:01.023 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:04:12.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:09:01.126 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:09:12.787 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:14:01.209 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:14:12.822 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:19:01.300 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:19:12.891 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:24:01.366 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:24:12.952 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:29:01.435 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:29:12.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:34:01.509 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:34:13.012 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:39:01.610 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:39:13.032 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:44:01.677 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:44:13.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:49:01.760 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:49:13.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:54:01.853 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:54:13.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 20:59:01.928 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 20:59:13.262 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:04:02.003 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:04:13.308 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:09:02.087 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:09:13.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:14:02.173 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:14:13.437 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:19:02.246 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:19:13.486 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:24:02.365 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:24:13.541 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:29:02.430 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:29:13.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:34:02.483 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:34:13.695 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:39:02.545 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:39:13.785 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:44:02.680 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:44:13.792 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:49:02.790 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:49:13.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:54:02.903 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:54:13.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 21:59:02.975 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 21:59:13.902 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:04:03.050 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:04:13.922 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:09:03.131 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:09:13.927 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:14:03.230 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:14:13.939 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:19:03.319 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:19:14.012 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:24:03.415 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:24:14.087 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:29:03.497 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:29:14.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:34:03.571 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:34:14.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:39:03.635 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:39:14.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:44:03.707 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:44:14.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:49:03.796 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:49:14.352 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:54:03.868 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:54:14.443 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 22:59:03.968 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 22:59:14.454 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:04:04.027 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:04:14.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:09:04.095 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:09:14.521 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:14:04.173 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:14:14.556 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:19:04.254 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:19:14.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:24:04.334 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:24:14.575 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:29:04.450 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:29:14.607 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:34:04.590 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:34:14.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:39:04.686 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:39:14.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:44:04.743 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:44:14.764 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:49:04.818 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:49:14.826 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:54:04.875 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:54:14.878 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-19 23:59:04.938 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-19 23:59:14.908 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:04:05.009 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:04:14.942 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:09:05.103 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:09:14.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:14:05.201 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:14:15.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:19:05.282 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:19:15.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:24:05.381 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:24:15.047 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:29:05.460 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:29:15.076 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:34:05.549 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:34:15.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:39:05.659 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:39:15.121 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:44:05.752 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:44:15.163 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:49:05.834 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:49:15.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:54:05.908 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:54:15.228 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 00:59:05.989 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 00:59:15.274 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:04:06.067 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:04:15.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:09:06.143 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:09:15.330 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:14:06.236 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:14:15.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:19:06.308 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:19:15.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:24:06.404 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:24:15.439 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:29:06.494 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:29:15.521 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:34:06.569 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:34:15.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:39:06.659 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:39:15.555 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:44:06.718 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:44:15.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:49:06.820 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:49:15.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:54:06.889 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:54:15.672 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 01:59:06.961 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 01:59:15.707 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:04:07.039 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:04:15.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:09:07.143 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:09:15.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:14:07.242 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:14:15.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:19:07.308 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:19:15.901 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:24:07.391 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:24:15.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:29:07.473 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:29:16.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:34:07.568 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:34:16.077 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:39:07.627 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:39:16.118 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:44:07.694 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:44:16.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:49:07.760 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:49:16.195 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:54:07.827 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:54:16.226 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 02:59:07.900 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 02:59:16.249 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:04:07.982 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:04:16.315 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:09:08.071 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:09:16.365 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:14:08.173 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:14:16.414 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:19:08.238 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:19:16.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:24:08.306 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:24:16.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:29:08.380 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:29:16.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:34:08.483 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:34:16.567 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:39:08.571 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:39:16.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:44:08.650 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:44:16.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:49:08.718 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:49:16.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:54:08.802 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:54:16.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 03:59:08.892 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 03:59:16.691 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:04:08.973 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:04:16.723 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:09:09.071 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:09:16.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:14:09.141 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:14:16.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:19:09.227 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:19:16.773 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:24:09.300 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:24:16.812 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:29:09.376 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:29:16.846 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:34:09.480 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:34:16.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:39:09.573 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:39:16.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:44:09.655 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:44:16.968 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:49:09.720 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:49:17.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:54:09.816 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:54:17.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 04:59:09.896 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 04:59:17.183 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:04:10.020 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:04:17.275 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:09:10.110 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:09:17.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:14:10.199 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:14:17.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:19:10.439 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:19:17.412 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:24:10.556 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:24:17.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:29:10.602 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:29:17.497 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:34:10.656 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:34:17.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:39:10.816 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:39:17.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:44:10.903 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:44:17.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:49:10.963 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:49:17.665 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:54:11.026 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:54:17.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 05:59:11.128 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 05:59:17.778 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:04:11.192 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:04:17.809 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:09:11.265 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:09:17.903 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:14:11.325 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:14:17.958 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:19:11.387 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:19:17.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:24:11.474 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:24:18.041 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:29:11.669 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:29:18.077 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:34:11.931 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:34:18.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:39:12.047 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:39:18.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:44:12.125 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:44:18.234 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:49:12.441 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:49:18.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:54:12.530 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:54:18.348 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 06:59:12.584 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 06:59:18.424 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:04:12.751 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:04:18.491 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:09:12.927 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:09:18.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:14:13.048 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:14:18.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:19:13.104 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:19:18.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:24:13.149 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:24:18.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:29:13.202 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:29:18.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:34:13.373 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:34:18.854 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:39:13.633 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:39:18.878 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:44:13.691 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:44:18.927 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:49:13.781 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:49:18.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:54:13.938 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:54:19.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 07:59:14.411 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 07:59:19.115 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:04:14.646 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:04:19.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:09:14.706 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:09:19.266 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:14:15.086 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:14:19.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:19:15.493 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:19:19.301 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:24:15.714 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:24:19.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:29:15.776 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:29:19.348 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:34:15.831 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:34:19.385 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:39:15.966 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:39:19.438 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:44:16.436 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:44:19.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:49:16.553 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:49:19.500 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:54:16.608 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:54:19.522 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 08:59:16.674 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 08:59:19.603 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:04:16.771 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:04:19.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:09:16.868 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:09:19.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:14:16.974 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:14:19.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:19:17.073 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:19:19.727 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:24:17.145 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:24:19.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:29:17.217 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:29:19.809 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:34:17.278 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:34:19.814 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:39:17.347 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:39:19.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:44:17.412 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:44:19.918 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:49:17.492 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:49:19.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:54:17.641 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:54:19.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 09:59:17.721 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 09:59:20.057 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:04:17.796 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:04:20.101 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:09:17.977 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:09:20.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:14:18.049 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:14:20.255 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:19:18.131 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:19:20.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:24:18.203 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:24:20.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:29:18.375 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:29:20.453 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:34:18.473 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:34:20.487 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:39:18.541 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:39:20.585 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:41:08.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1814; name: POREC:merge_coordsorted_bams (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/2a/f47d28f986cd04376f4b2299a75966] Aug-20 10:41:08.404 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-20 10:41:08.404 [Task submitter] INFO nextflow.Session - [f1/4021c7] Submitted process > POREC:merge_paired_end_bams (1) Aug-20 10:44:19.472 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 3 -- tasks to be submitted are shown below ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:44:20.610 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] Aug-20 10:45:58.583 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1815; name: POREC:merge_paired_end_bams (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/f1/4021c72619d73aa61359e1e4cd25b5] Aug-20 10:45:58.663 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-20 10:45:58.663 [Task submitter] INFO nextflow.Session - [41/0cc86f] Submitted process > POREC:merge_namesorted_bams (1) Aug-20 10:49:19.704 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 2 -- tasks to be submitted are shown below ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:49:20.654 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] Aug-20 10:52:20.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1816; name: POREC:merge_namesorted_bams (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/41/0cc86f7a7fc76384b1dd9bd580b0ca] Aug-20 10:52:20.598 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-20 10:52:20.598 [Task submitter] INFO nextflow.Session - [ae/1a2d4f] Submitted process > POREC:merge_pairs (1) Aug-20 10:54:20.631 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:54:20.686 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] Aug-20 10:59:20.691 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 10:59:20.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] Aug-20 11:02:22.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1819; name: POREC:merge_pairs (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/ae/1a2d4fff1fef91ed3aaf86af5fc260] Aug-20 11:02:23.067 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-20 11:02:23.067 [Task submitter] INFO nextflow.Session - [c2/461c7d] Submitted process > POREC:merge_pairs_stats (1) Aug-20 11:02:49.161 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1818; name: POREC:merge_pairs_stats (1); status: COMPLETED; exit: 0; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/c2/461c7d5a27f65f2fefe1f5082591bb] Aug-20 11:02:49.172 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-20 11:02:49.172 [Task submitter] INFO nextflow.Session - [b3/cbc440] Submitted process > POREC:prepare_hic (1) Aug-20 11:04:20.788 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:04:21.233 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:09:20.793 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:09:21.341 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:14:20.885 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:14:21.421 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:19:20.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:19:21.504 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:24:21.018 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:24:21.613 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:29:21.087 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:29:21.711 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:34:21.087 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:34:21.838 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:39:21.183 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:39:21.930 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:44:21.270 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:44:22.081 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:49:21.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:49:22.168 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:54:21.389 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:54:22.314 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 11:59:21.392 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 11:59:22.440 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:04:21.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:04:22.527 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:09:21.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:09:22.592 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:14:21.523 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:14:22.681 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:19:21.607 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:19:22.732 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:24:21.670 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:24:22.785 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:29:21.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:29:22.842 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:34:21.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:34:22.916 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:39:21.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:39:22.961 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:44:21.892 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:44:23.010 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:49:21.971 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: RUNNING; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:49:23.164 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 1821; name: POREC:pair_stats_report (1); status: NEW; exit: -; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/a5/65a3c8c05975fdef858bed2bc02278] Aug-20 12:49:37.792 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1820; name: POREC:prepare_hic (1); status: COMPLETED; exit: 127; error: -; workDir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6] Aug-20 12:49:37.837 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Aug-20 12:49:37.837 [Task submitter] INFO nextflow.Session - [a5/65a3c8] Submitted process > POREC:pair_stats_report (1) Aug-20 12:49:37.841 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=POREC:prepare_hic (1); work-dir=/public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6 error [nextflow.exception.ProcessFailedException]: Process `POREC:prepare_hic (1)` terminated with an error exit status (127) Aug-20 12:49:38.100 [Task monitor] ERROR nextflow.processor.TaskProcessor - Error executing process > 'POREC:prepare_hic (1)' Caused by: Process `POREC:prepare_hic (1)` terminated with an error exit status (127) Command executed: cut -f1,2 fasta.fai > sizes.genome pairtools flip input.pairs.gz -c sizes.genome > flipped.pairs.tmp pairtools sort flipped.pairs.tmp > sorted.pairs.tmp pairtools dedup --chunksize 100000 sorted.pairs.tmp > dedup.pairs.tmp java -jar /home/epi2melabs/juicer_tools_1.22.01.jar pre dedup.pairs.tmp "null.hic" sizes.genome rm -rf "*.pairs.tmp" Command exit status: 127 Command output: (empty) Command error: .command.sh: line 6: java: command not found Work dir: /public/home/yqming/Work_plate/Cotton_data/Pore_data/work/b3/cbc440b8048ee9a1097a1867d67ce6 Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out` Aug-20 12:49:38.121 [Task monitor] DEBUG nextflow.Session - Session aborted -- Cause: Process `POREC:prepare_hic (1)` terminated with an error exit status (127) Aug-20 12:49:38.269 [main] DEBUG nextflow.Session - Session await > all processes finished Aug-20 12:49:38.269 [main] DEBUG nextflow.Session - Session await > all barriers passed Aug-20 12:49:38.283 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop Aug-20 12:49:38.301 [main] WARN n.processor.TaskPollingMonitor - Killing running tasks (1) Aug-20 12:49:38.318 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=1819; failedCount=1; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=1; runningCount=-1; retriesCount=0; abortedCount=1; succeedDuration=108d 3h 59m 45s; failedDuration=2d 5h 24m 16s; cachedDuration=0ms;loadCpus=-30; loadMemory=0; peakRunning=2; peakCpus=35; peakMemory=122 GB; ] Aug-20 12:49:38.319 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file Aug-20 12:49:38.410 [main] DEBUG nextflow.trace.ReportObserver - Workflow completed -- rendering execution report Aug-20 12:49:39.809 [main] DEBUG nextflow.trace.TimelineObserver - Workflow completed -- rendering execution timeline Aug-20 12:49:40.126 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done Aug-20 12:49:40.150 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye