Cys.sqlite is a single file database containing comprehensive coverage of cysteine disulfide bonds in the protein databank. This repository contains the code used to build and update Cys.sqlite along with example scripts/queries. This repository is designed to facilitate the use and evolution of Cys.sqlite. The original (2018-12-22) and most recent version of the database can be downloaded from the following links:
- 2018-12-22: https://trc.nist.gov/jcim_cys.sqlite.gz
- Current: https://trc.nist.gov/cys.sqlite.gz
The original version corresponds to that used in the associated publication, titled Cys.sqlite: A structured-information approach to the comprehensive analysis of cysteine disulfide bonds in the Protein Databank. Please cite the original article if Cys.sqlite or the code included here is useful to your research efforts.
Updates of Cys.sqlite will be carried out weekly on Wednesdays, the day RCSB.org releases new entries.
Demian Riccardi
NIST Applied Chemicals & Materials Division
Boulder, CO 80305