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WIPP Pyramid Building plugin

WIPP Pyramid Building plugin based on NIST WIPP Pyramid Building.

Reads multiple stitching vectors generated from MIST and creates one pyramid from tiled TIFF images per stitching vector.

Build the JAR

Requires Java 8 and Maven

mvn clean package

Docker distribution

This plugin is available on DockerHub from the WIPP organization

docker pull wipp/wipp-pyramid-plugin

Running the Docker container

docker run \
    -v "path/to/input/data/folder":/data/inputs \
    -v "path/to/output/folder":/data/outputs \
    wipp/wipp-pyramid-plugin \
    --inputImages /data/inputs/"inputCollectionTiledFolder" \ 
    --inputStitchingVector /data/inputs/"stitchingVectorFolder" \
    --depth 8U|16U \
    --blending overlay|max \
    --format deepzoom|tiff \
    --output /data/outputs