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IngoScholtes committed May 10, 2017
1 parent f5710f6 commit 84fa2cbb3af9b9280f848fbad79b33ed5e7fc78c
Showing with 807 additions and 23 deletions.
  1. +661 −0 LICENSE.txt
  2. +3 −0 README.md
  3. +1 −0 pathpy.pyproj
  4. +20 −3 pathpy/DAG.py
  5. +20 −3 pathpy/HigherOrderNetwork.py
  6. +20 −3 pathpy/Log.py
  7. +20 −3 pathpy/MarkovSequence.py
  8. +20 −3 pathpy/MultiOrderModel.py
  9. +20 −3 pathpy/Paths.py
  10. +20 −3 pathpy/TemporalNetwork.py
  11. +2 −2 setup.py

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@@ -57,7 +57,10 @@ The research behind this data analysis framework was funded by the Swiss State S
[Ingo Scholtes](http://www.ingoscholtes.net) (project lead, development)
Roman Cattaneo (development)
Nicolas Wider (testing)
Luca Verginer (test suite integration)
# Copyright
`pathpy` is licensed under the [GNU Affero General Public License](https://choosealicense.com/licenses/agpl-3.0/).
(c) Copyright ETH Zürich, Chair of Systems Design, 2015-2017
@@ -59,6 +59,7 @@
<ItemGroup>
<Content Include=".gitignore" />
<Content Include="DESCRIPTION.rst" />
<Content Include="LICENSE.txt" />
<Content Include="README.md" />
<Content Include="tests\README.md" />
<Content Include="tests\test_data\edge_frequency.edge" />
@@ -1,9 +1,26 @@
# -*- coding: utf-8 -*-
"""
Created on Tue Sep 20 12:06:00 2016
@author: Ingo Scholtes
pathpy is an OpenSource python package for the analysis of sequential data on pathways and temporal networks using higher- and multi order graphical models
(c) Copyright ETH Zurich, Chair of Systems Design, 2015-2017
Copyright (C) 2016-2017 Ingo Scholtes, ETH Zürich
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published
by the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Contact the developer:
E-mail: ischoltes@ethz.ch
Web: http://www.ingoscholtes.net
"""
import collections as _co
@@ -1,9 +1,26 @@
# -*- coding: utf-8 -*-
"""
Created on Tue Sep 20 12:06:00 2016
@author: Ingo Scholtes
pathpy is an OpenSource python package for the analysis of sequential data on pathways and temporal networks using higher- and multi order graphical models
(c) Copyright ETH Zurich, Chair of Systems Design, 2015-2017
Copyright (C) 2016-2017 Ingo Scholtes, ETH Zürich
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published
by the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Contact the developer:
E-mail: ischoltes@ethz.ch
Web: http://www.ingoscholtes.net
"""
import collections as _co
@@ -1,9 +1,26 @@
# -*- coding: utf-8 -*-
"""
Created on Thu Aug 19 11:12:39 2015
@author: Ingo Scholtes
pathpy is an OpenSource python package for the analysis of sequential data on pathways and temporal networks using higher- and multi order graphical models
(c) Copyright ETH Zurich, Chair of Systems Design, 2015-2017
Copyright (C) 2016-2017 Ingo Scholtes, ETH Zürich
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published
by the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Contact the developer:
E-mail: ischoltes@ethz.ch
Web: http://www.ingoscholtes.net
"""
import enum
@@ -1,9 +1,26 @@
# -*- coding: utf-8 -*-
"""
Created on Tue Sep 20 12:06:00 2016
@author: Ingo Scholtes
pathpy is an OpenSource python package for the analysis of sequential data on pathways and temporal networks using higher- and multi order graphical models
(c) Copyright ETH Zurich, Chair of Systems Design, 2015-2017
Copyright (C) 2016-2017 Ingo Scholtes, ETH Zürich
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published
by the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Contact the developer:
E-mail: ischoltes@ethz.ch
Web: http://www.ingoscholtes.net
"""
import numpy as _np
@@ -1,9 +1,26 @@
# -*- coding: utf-8 -*-
"""
Created on Tue Sep 20 12:06:00 2016
@author: Ingo Scholtes
pathpy is an OpenSource python package for the analysis of sequential data on pathways and temporal networks using higher- and multi order graphical models
(c) Copyright ETH Zurich, Chair of Systems Design, 2015-2017
Copyright (C) 2016-2017 Ingo Scholtes, ETH Zürich
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published
by the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Contact the developer:
E-mail: ischoltes@ethz.ch
Web: http://www.ingoscholtes.net
"""
import numpy as _np
@@ -1,9 +1,26 @@
# -*- coding: utf-8 -*-
"""
Created on Tue Sep 20 12:06:00 2016
@author: Ingo Scholtes
pathpy is an OpenSource python package for the analysis of sequential data on pathways and temporal networks using higher- and multi order graphical models
(c) Copyright ETH Zurich, Chair of Systems Design, 2015-2016
Copyright (C) 2016-2017 Ingo Scholtes, ETH Zürich
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published
by the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Contact the developer:
E-mail: ischoltes@ethz.ch
Web: http://www.ingoscholtes.net
"""
import numpy as _np
@@ -1,9 +1,26 @@
# -*- coding: utf-8 -*-
"""
Created on Thu Feb 19 11:49:39 2015
@author: Ingo Scholtes, Roman Cattaneo
pathpy is an OpenSource python package for the analysis of sequential data on pathways and temporal networks using higher- and multi order graphical models
(c) Copyright ETH Zürich, Chair of Systems Design, 2015-2017
Copyright (C) 2016-2017 Ingo Scholtes, ETH Zürich
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published
by the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Contact the developer:
E-mail: ischoltes@ethz.ch
Web: http://www.ingoscholtes.net
"""
import numpy as _np
import sys as _sys
@@ -40,7 +40,7 @@
author_email='ischoltes@ethz.ch',
# Choose your license
license='MIT',
license='AGPL-3.0+',
# See https://pypi.python.org/pypi?%3Aaction=list_classifiers
classifiers=[
@@ -55,7 +55,7 @@
'Topic :: Scientific/Engineering :: Information Analysis',
# Pick your license as you wish (should match "license" above)
'License :: OSI Approved :: MIT License',
'License :: OSI Approved :: AGPL-3.0+ License',
# Specify the Python versions you support here. In particular, ensure
# that you indicate whether you support Python 2, Python 3 or both.

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